Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58786.t1 | XP_003609491.2 | 96.4 | 252 | 7 | 1 | 1 | 250 | 1 | 252 | 5.30E-140 | 506.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58786.t1 | A0A396IEQ3 | 96.4 | 252 | 7 | 1 | 1 | 250 | 1 | 252 | 3.8e-140 | 506.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene58786.t1 | TF | PLATZ |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049265 | MS.gene58786 | 0.801646 | 8.16E-49 | -1.69E-46 |
| MS.gene04926 | MS.gene58786 | 0.824693 | 7.03E-54 | -1.69E-46 |
| MS.gene04932 | MS.gene58786 | 0.840098 | 1.07E-57 | -1.69E-46 |
| MS.gene049488 | MS.gene58786 | -0.802527 | 5.38E-49 | -1.69E-46 |
| MS.gene049611 | MS.gene58786 | 0.808275 | 3.35E-50 | -1.69E-46 |
| MS.gene050133 | MS.gene58786 | 0.808529 | 2.96E-50 | -1.69E-46 |
| MS.gene050380 | MS.gene58786 | 0.800926 | 1.15E-48 | -1.69E-46 |
| MS.gene050710 | MS.gene58786 | 0.817063 | 4.00E-52 | -1.69E-46 |
| MS.gene050720 | MS.gene58786 | 0.829948 | 3.87E-55 | -1.69E-46 |
| MS.gene050809 | MS.gene58786 | 0.829169 | 5.98E-55 | -1.69E-46 |
| MS.gene050868 | MS.gene58786 | -0.805985 | 1.02E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene58786 | -0.805181 | 1.51E-49 | -1.69E-46 |
| MS.gene05104 | MS.gene58786 | 0.815091 | 1.10E-51 | -1.69E-46 |
| MS.gene051385 | MS.gene58786 | 0.828463 | 8.86E-55 | -1.69E-46 |
| MS.gene051439 | MS.gene58786 | 0.801753 | 7.76E-49 | -1.69E-46 |
| MS.gene051552 | MS.gene58786 | 0.833766 | 4.42E-56 | -1.69E-46 |
| MS.gene051838 | MS.gene58786 | -0.80938 | 1.95E-50 | -1.69E-46 |
| MS.gene051907 | MS.gene58786 | 0.809015 | 2.33E-50 | -1.69E-46 |
| MS.gene051996 | MS.gene58786 | 0.855658 | 5.44E-62 | -1.69E-46 |
| MS.gene052211 | MS.gene58786 | 0.817996 | 2.47E-52 | -1.69E-46 |
| MS.gene052223 | MS.gene58786 | 0.828339 | 9.50E-55 | -1.69E-46 |
| MS.gene05234 | MS.gene58786 | 0.800503 | 1.40E-48 | -1.69E-46 |
| MS.gene05240 | MS.gene58786 | 0.848022 | 7.99E-60 | -1.69E-46 |
| MS.gene052606 | MS.gene58786 | 0.821476 | 3.96E-53 | -1.69E-46 |
| MS.gene052702 | MS.gene58786 | 0.806355 | 8.56E-50 | -1.69E-46 |
| MS.gene053406 | MS.gene58786 | 0.826236 | 3.03E-54 | -1.69E-46 |
| MS.gene054107 | MS.gene58786 | -0.800439 | 1.44E-48 | -1.69E-46 |
| MS.gene054147 | MS.gene58786 | 0.848933 | 4.47E-60 | -1.69E-46 |
| MS.gene054277 | MS.gene58786 | 0.818089 | 2.35E-52 | -1.69E-46 |
| MS.gene054290 | MS.gene58786 | 0.820421 | 6.92E-53 | -1.69E-46 |
| MS.gene054706 | MS.gene58786 | 0.818339 | 2.06E-52 | -1.69E-46 |
| MS.gene054742 | MS.gene58786 | 0.89489 | 1.61E-75 | -1.69E-46 |
| MS.gene055158 | MS.gene58786 | 0.803194 | 3.92E-49 | -1.69E-46 |
| MS.gene055159 | MS.gene58786 | 0.823957 | 1.05E-53 | -1.69E-46 |
| MS.gene055240 | MS.gene58786 | 0.818429 | 1.97E-52 | -1.69E-46 |
| MS.gene056076 | MS.gene58786 | 0.800775 | 1.23E-48 | -1.69E-46 |
| MS.gene056330 | MS.gene58786 | 0.863809 | 1.91E-64 | -1.69E-46 |
| MS.gene056590 | MS.gene58786 | 0.820147 | 8.00E-53 | -1.69E-46 |
| MS.gene056591 | MS.gene58786 | 0.821804 | 3.32E-53 | -1.69E-46 |
| MS.gene056678 | MS.gene58786 | 0.805195 | 1.50E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene58786 | 0.859233 | 4.76E-63 | -1.69E-46 |
| MS.gene056688 | MS.gene58786 | 0.824109 | 9.64E-54 | -1.69E-46 |
| MS.gene056690 | MS.gene58786 | 0.802973 | 4.35E-49 | -1.69E-46 |
| MS.gene056748 | MS.gene58786 | 0.801365 | 9.32E-49 | -1.69E-46 |
| MS.gene056920 | MS.gene58786 | 0.868859 | 4.77E-66 | -1.69E-46 |
| MS.gene056922 | MS.gene58786 | 0.824035 | 1.00E-53 | -1.69E-46 |
| MS.gene056923 | MS.gene58786 | 0.80513 | 1.55E-49 | -1.69E-46 |
| MS.gene056924 | MS.gene58786 | 0.811168 | 8.01E-51 | -1.69E-46 |
| MS.gene057261 | MS.gene58786 | 0.811867 | 5.65E-51 | -1.69E-46 |
| MS.gene057494 | MS.gene58786 | 0.800251 | 1.57E-48 | -1.69E-46 |
| MS.gene057544 | MS.gene58786 | 0.826986 | 2.01E-54 | -1.69E-46 |
| MS.gene058158 | MS.gene58786 | 0.822847 | 1.90E-53 | -1.69E-46 |
| MS.gene058177 | MS.gene58786 | 0.824879 | 6.35E-54 | -1.69E-46 |
| MS.gene05837 | MS.gene58786 | -0.80056 | 1.36E-48 | -1.69E-46 |
| MS.gene058418 | MS.gene58786 | 0.838879 | 2.21E-57 | -1.69E-46 |
| MS.gene058444 | MS.gene58786 | -0.806022 | 1.01E-49 | -1.69E-46 |
| MS.gene058603 | MS.gene58786 | 0.803375 | 3.59E-49 | -1.69E-46 |
| MS.gene05926 | MS.gene58786 | 0.800877 | 1.17E-48 | -1.69E-46 |
| MS.gene059328 | MS.gene58786 | 0.809064 | 2.28E-50 | -1.69E-46 |
| MS.gene059891 | MS.gene58786 | 0.810024 | 1.42E-50 | -1.69E-46 |
| MS.gene059892 | MS.gene58786 | 0.809606 | 1.74E-50 | -1.69E-46 |
| MS.gene059922 | MS.gene58786 | 0.804986 | 1.66E-49 | -1.69E-46 |
| MS.gene060087 | MS.gene58786 | 0.874045 | 9.18E-68 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58786.t1 | MTR_4g116300 | 96.400 | 250 | 7 | 1 | 3 | 250 | 1 | 250 | 0.0 | 499 |
| MS.gene58786.t1 | MTR_4g094680 | 43.825 | 251 | 102 | 5 | 5 | 249 | 19 | 236 | 4.61e-61 | 192 |
| MS.gene58786.t1 | MTR_2g055210 | 41.434 | 251 | 131 | 6 | 5 | 249 | 99 | 339 | 1.37e-58 | 189 |
| MS.gene58786.t1 | MTR_2g036170 | 44.033 | 243 | 109 | 7 | 7 | 249 | 36 | 251 | 8.26e-54 | 174 |
| MS.gene58786.t1 | MTR_4g078170 | 34.156 | 243 | 110 | 5 | 8 | 249 | 15 | 208 | 4.52e-40 | 138 |
| MS.gene58786.t1 | MTR_5g007230 | 45.926 | 135 | 72 | 1 | 8 | 141 | 21 | 155 | 2.97e-39 | 135 |
| MS.gene58786.t1 | MTR_8g066820 | 48.462 | 130 | 66 | 1 | 5 | 133 | 30 | 159 | 2.21e-38 | 134 |
| MS.gene58786.t1 | MTR_5g030130 | 45.652 | 138 | 74 | 1 | 5 | 141 | 32 | 169 | 7.73e-37 | 130 |
| MS.gene58786.t1 | MTR_5g030130 | 47.727 | 132 | 68 | 1 | 5 | 135 | 32 | 163 | 1.63e-36 | 128 |
| MS.gene58786.t1 | MTR_7g102790 | 42.647 | 136 | 74 | 1 | 8 | 139 | 7 | 142 | 5.74e-33 | 119 |
| MS.gene58786.t1 | MTR_1g062160 | 42.188 | 128 | 72 | 2 | 8 | 133 | 7 | 134 | 2.11e-29 | 110 |
| MS.gene58786.t1 | MTR_2g084525 | 39.007 | 141 | 76 | 4 | 8 | 138 | 5 | 145 | 2.08e-24 | 97.8 |
| MS.gene58786.t1 | MTR_8g105930 | 32.704 | 159 | 80 | 4 | 1 | 133 | 1 | 158 | 2.67e-21 | 89.7 |
| MS.gene58786.t1 | MTR_2g084495 | 37.857 | 140 | 76 | 4 | 10 | 138 | 6 | 145 | 7.04e-21 | 88.2 |
| MS.gene58786.t1 | MTR_2g084510 | 34.752 | 141 | 82 | 4 | 8 | 138 | 4 | 144 | 4.83e-20 | 86.3 |
| MS.gene58786.t1 | MTR_2g060500 | 37.226 | 137 | 69 | 5 | 10 | 132 | 12 | 145 | 2.29e-18 | 79.3 |
| MS.gene58786.t1 | MTR_2g060540 | 37.857 | 140 | 70 | 6 | 10 | 135 | 12 | 148 | 4.04e-18 | 79.0 |
| MS.gene58786.t1 | MTR_8g097310 | 33.929 | 112 | 66 | 2 | 36 | 145 | 2 | 107 | 1.75e-14 | 69.3 |
| MS.gene58786.t1 | MTR_5g077740 | 31.868 | 91 | 59 | 2 | 7 | 95 | 22 | 111 | 4.63e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58786.t1 | AT2G12646 | 66.667 | 258 | 74 | 5 | 3 | 250 | 1 | 256 | 2.36e-117 | 336 |
| MS.gene58786.t1 | AT2G12646 | 66.667 | 258 | 74 | 5 | 3 | 250 | 1 | 256 | 2.36e-117 | 336 |
| MS.gene58786.t1 | AT2G12646 | 66.535 | 254 | 73 | 5 | 7 | 250 | 2 | 253 | 4.06e-115 | 330 |
| MS.gene58786.t1 | AT3G60670 | 45.455 | 253 | 112 | 4 | 8 | 249 | 7 | 244 | 2.92e-72 | 221 |
| MS.gene58786.t1 | AT1G31040 | 46.311 | 244 | 111 | 6 | 7 | 249 | 18 | 242 | 3.09e-61 | 193 |
| MS.gene58786.t1 | AT4G17900 | 32.669 | 251 | 108 | 5 | 5 | 249 | 31 | 226 | 6.57e-37 | 130 |
| MS.gene58786.t1 | AT4G17900 | 32.669 | 251 | 108 | 5 | 5 | 249 | 17 | 212 | 7.40e-37 | 129 |
| MS.gene58786.t1 | AT1G32700 | 48.485 | 132 | 67 | 1 | 8 | 138 | 12 | 143 | 1.15e-36 | 129 |
| MS.gene58786.t1 | AT1G76590 | 32.922 | 243 | 147 | 3 | 8 | 249 | 18 | 245 | 3.53e-35 | 126 |
| MS.gene58786.t1 | AT1G21000 | 34.375 | 256 | 129 | 6 | 8 | 249 | 13 | 243 | 6.86e-35 | 125 |
| MS.gene58786.t1 | AT1G21000 | 34.363 | 259 | 125 | 6 | 8 | 249 | 16 | 246 | 7.08e-35 | 125 |
| MS.gene58786.t1 | AT1G43000 | 43.077 | 130 | 73 | 1 | 8 | 136 | 16 | 145 | 1.07e-32 | 119 |
| MS.gene58786.t1 | AT1G43000 | 43.077 | 130 | 73 | 1 | 8 | 136 | 9 | 138 | 1.14e-32 | 119 |
| MS.gene58786.t1 | AT5G46710 | 41.985 | 131 | 74 | 2 | 5 | 133 | 25 | 155 | 6.32e-30 | 110 |
| MS.gene58786.t1 | AT5G46710 | 41.985 | 131 | 74 | 2 | 5 | 133 | 9 | 139 | 7.37e-30 | 111 |
| MS.gene58786.t1 | AT5G46710 | 41.985 | 131 | 74 | 2 | 5 | 133 | 25 | 155 | 9.49e-30 | 111 |
| MS.gene58786.t1 | AT2G01818 | 39.860 | 143 | 76 | 3 | 9 | 141 | 12 | 154 | 1.38e-28 | 108 |
| MS.gene58786.t1 | AT2G27930 | 41.844 | 141 | 71 | 3 | 6 | 135 | 2 | 142 | 3.48e-28 | 105 |
| MS.gene58786.t1 | AT2G27930 | 41.844 | 141 | 71 | 3 | 6 | 135 | 2 | 142 | 3.48e-28 | 105 |
| MS.gene58786.t1 | AT2G27930 | 41.429 | 140 | 71 | 3 | 6 | 134 | 2 | 141 | 8.87e-28 | 105 |
| MS.gene58786.t1 | AT2G27930 | 41.429 | 140 | 71 | 3 | 6 | 134 | 2 | 141 | 8.87e-28 | 105 |
| MS.gene58786.t1 | AT1G32700 | 49.020 | 102 | 51 | 1 | 38 | 138 | 3 | 104 | 2.33e-26 | 101 |
| MS.gene58786.t1 | AT2G27930 | 44.186 | 86 | 39 | 1 | 58 | 134 | 59 | 144 | 3.89e-17 | 77.4 |
| MS.gene58786.t1 | AT2G27930 | 44.186 | 86 | 39 | 1 | 58 | 134 | 59 | 144 | 3.89e-17 | 77.4 |
| MS.gene58786.t1 | AT2G01818 | 36.471 | 85 | 48 | 2 | 63 | 141 | 6 | 90 | 2.36e-12 | 63.5 |
Find 54 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTTTATTGCTATTATTAT+TGG | 0.112766 | 8.3:-9689492 | None:intergenic |
| CCAAGAGAGCAATGGATAAA+AGG | 0.296836 | 8.3:-9688690 | None:intergenic |
| CTTCCAACCATGCAGGCTTT+TGG | 0.312977 | 8.3:-9688164 | None:intergenic |
| TATACAGAAAAGTTCTTTGT+TGG | 0.345795 | 8.3:+9688192 | MS.gene58786:CDS |
| AAGACCTTTCACCCTACTTA+AGG | 0.378382 | 8.3:+9689255 | MS.gene58786:CDS |
| GATCCAATGAGTTCATATTC+AGG | 0.387250 | 8.3:+9689374 | MS.gene58786:CDS |
| TAAAGTTTCTGATGAAGATA+TGG | 0.401550 | 8.3:+9689508 | MS.gene58786:CDS |
| GATAGTCAGGACTTAATTGT+AGG | 0.404339 | 8.3:-9689289 | None:intergenic |
| AGTATGATTAGTAGAAGAAA+AGG | 0.404960 | 8.3:+9689536 | MS.gene58786:CDS |
| AGCAATGGATAAAAGGTTCT+TGG | 0.405041 | 8.3:-9688683 | None:intergenic |
| TTATCATGATGTTCTTAGAT+TGG | 0.410755 | 8.3:+9688344 | MS.gene58786:CDS |
| TTCCTGATCCTTTGAATTGG+CGG | 0.427487 | 8.3:-9688632 | None:intergenic |
| TGGCATGCACAGAAATTGTT+AGG | 0.429624 | 8.3:+9689426 | MS.gene58786:CDS |
| TCATATTCAGGATCATCATC+AGG | 0.433500 | 8.3:+9689386 | MS.gene58786:CDS |
| TCTTGTGGAATTAGATAGTC+AGG | 0.440473 | 8.3:-9689302 | None:intergenic |
| AGTTTCCTGATCCTTTGAAT+TGG | 0.442272 | 8.3:-9688635 | None:intergenic |
| AAGTATGTGTGCAAAATTCA+TGG | 0.453257 | 8.3:+9689469 | MS.gene58786:CDS |
| CTTCTTGATGAACACCACTT+TGG | 0.453482 | 8.3:-9688598 | None:intergenic |
| TTTGGCACTATTGATAGTAT+AGG | 0.459040 | 8.3:-9688580 | None:intergenic |
| AACCGCCAATTCAAAGGATC+AGG | 0.462617 | 8.3:+9688630 | MS.gene58786:CDS |
| GATCCTGAATATGAACTCAT+TGG | 0.472047 | 8.3:-9689377 | None:intergenic |
| AGTCTTCATATATATGATCA+TGG | 0.477545 | 8.3:+9688029 | None:intergenic |
| AAACCAAAAGCCTGCATGGT+TGG | 0.480103 | 8.3:+9688161 | MS.gene58786:CDS |
| GGTCTTGCATATCCTTAAGT+AGG | 0.485067 | 8.3:-9689267 | None:intergenic |
| ATTGTTAGGAAGAGAAGAAG+TGG | 0.501836 | 8.3:+9689440 | MS.gene58786:CDS |
| CCATTGCTCTCTTGGATGCA+AGG | 0.504085 | 8.3:+9688698 | MS.gene58786:CDS |
| CTATCTAATTCCACAAGAGA+TGG | 0.516025 | 8.3:+9689307 | MS.gene58786:CDS |
| TATCTAATTCCACAAGAGAT+GGG | 0.519713 | 8.3:+9689308 | MS.gene58786:CDS |
| AATGACAAGGTCAACAATTG+TGG | 0.532726 | 8.3:+9689343 | MS.gene58786:CDS |
| CCTCAAAACCGCCAATTCAA+AGG | 0.532742 | 8.3:+9688624 | MS.gene58786:CDS |
| GTCTTGCATATCCTTAAGTA+GGG | 0.540564 | 8.3:-9689266 | None:intergenic |
| AGGCGGTGGTAGCGATGAGA+TGG | 0.543611 | 8.3:-9688300 | None:intergenic |
| AATGGATAAAAGGTTCTTGG+AGG | 0.548499 | 8.3:-9688680 | None:intergenic |
| ATAGTCAGGACTTAATTGTA+GGG | 0.550330 | 8.3:-9689288 | None:intergenic |
| TAAAGAGCTTCCAACCATGC+AGG | 0.552228 | 8.3:-9688171 | None:intergenic |
| TAACAAAGAGGAGATCTATG+AGG | 0.552341 | 8.3:-9689563 | None:intergenic |
| TATAGACTGCACCAATGTCC+AGG | 0.557416 | 8.3:+9688383 | MS.gene58786:CDS |
| TACTATCAATAGTGCCAAAG+TGG | 0.558364 | 8.3:+9688584 | MS.gene58786:CDS |
| ATCTAATTCCACAAGAGATG+GGG | 0.572263 | 8.3:+9689309 | MS.gene58786:CDS |
| TTAGGAAGAGAAGAAGTGGA+TGG | 0.575841 | 8.3:+9689444 | MS.gene58786:CDS |
| AGGGAAACCAAAAGCCTGCA+TGG | 0.579853 | 8.3:+9688157 | MS.gene58786:intron |
| CATAACGACGAACTTGAAGA+AGG | 0.581891 | 8.3:-9688320 | None:intergenic |
| AACAAAGAGGAGATCTATGA+GGG | 0.605762 | 8.3:-9689562 | None:intergenic |
| GCTAACACTAATTAACAAAG+AGG | 0.610407 | 8.3:-9689575 | None:intergenic |
| ATATCCTTAAGTAGGGTGAA+AGG | 0.612227 | 8.3:-9689259 | None:intergenic |
| CCTTGCATCCAAGAGAGCAA+TGG | 0.619111 | 8.3:-9688698 | None:intergenic |
| CGATGAGATGGAAAGCAATG+AGG | 0.624526 | 8.3:-9688288 | None:intergenic |
| CATATTCAGGATCATCATCA+GGG | 0.632732 | 8.3:+9689387 | MS.gene58786:CDS |
| AGGGTCAGAGAATATGAGCA+TGG | 0.657131 | 8.3:+9689406 | MS.gene58786:CDS |
| TCTAATTCCACAAGAGATGG+GGG | 0.658047 | 8.3:+9689310 | MS.gene58786:CDS |
| GACGAACTTGAAGAAGGCGG+TGG | 0.658588 | 8.3:-9688314 | None:intergenic |
| ATGTATATGTACCTGGACAT+TGG | 0.663071 | 8.3:-9688394 | None:intergenic |
| GGGATGAATTAGAAATGACA+AGG | 0.706223 | 8.3:+9689330 | MS.gene58786:CDS |
| AACGACGAACTTGAAGAAGG+CGG | 0.734968 | 8.3:-9688317 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTATACATAGTATTA+TGG | + | chr8.3:9688728-9688747 | MS.gene58786:intron | 10.0% |
| !! | TCAAAATTCTTATATATTGA+TGG | + | chr8.3:9688090-9688109 | MS.gene58786:intron | 15.0% |
| !! | TGAATTACATAAGATTTAAT+TGG | - | chr8.3:9688502-9688521 | None:intergenic | 15.0% |
| !! | TTGGTTAAAATGATTTAATT+TGG | + | chr8.3:9688121-9688140 | MS.gene58786:intron | 15.0% |
| !!! | AACTTTATTGCTATTATTAT+TGG | - | chr8.3:9689495-9689514 | None:intergenic | 15.0% |
| !!! | AATTTGGTAATTGTTAATAT+AGG | + | chr8.3:9688137-9688156 | MS.gene58786:intron | 15.0% |
| !!! | ATTTGGTAATTGTTAATATA+GGG | + | chr8.3:9688138-9688157 | MS.gene58786:intron | 15.0% |
| !!! | TACATATTTTTTTTATGAGA+AGG | - | chr8.3:9689014-9689033 | None:intergenic | 15.0% |
| !!! | TTTTAATTTCTGATTGAAAA+AGG | + | chr8.3:9688534-9688553 | MS.gene58786:intron | 15.0% |
| !! | AAAAAGACTTAAGAAAACAA+AGG | - | chr8.3:9688067-9688086 | None:intergenic | 20.0% |
| !! | AAAAGACTTAAGAAAACAAA+GGG | - | chr8.3:9688066-9688085 | None:intergenic | 20.0% |
| !! | AAATCTTATGTAATTCAACA+TGG | + | chr8.3:9688505-9688524 | MS.gene58786:intron | 20.0% |
| !! | AACTCATTGAATTAAATGAT+TGG | + | chr8.3:9688840-9688859 | MS.gene58786:intron | 20.0% |
| !! | ATGAGCATAAATGAATTTAA+TGG | - | chr8.3:9689082-9689101 | None:intergenic | 20.0% |
| !! | ATGGTTTATACATAGAATTA+TGG | + | chr8.3:9688747-9688766 | MS.gene58786:intron | 20.0% |
| !!! | ATATGCTTAATTTGATCATA+TGG | + | chr8.3:9689192-9689211 | MS.gene58786:intron | 20.0% |
| ! | AATTGAGCACATATATTGAT+TGG | + | chr8.3:9688907-9688926 | MS.gene58786:intron | 25.0% |
| ! | AGTATGATTAGTAGAAGAAA+AGG | + | chr8.3:9689536-9689555 | MS.gene58786:CDS | 25.0% |
| ! | CATATGGAGTATATATTTGT+AGG | + | chr8.3:9689208-9689227 | MS.gene58786:intron | 25.0% |
| ! | TAAAGTTTCTGATGAAGATA+TGG | + | chr8.3:9689508-9689527 | MS.gene58786:CDS | 25.0% |
| ! | TATACAGAAAAGTTCTTTGT+TGG | + | chr8.3:9688192-9688211 | MS.gene58786:CDS | 25.0% |
| ! | TTATCATGATGTTCTTAGAT+TGG | + | chr8.3:9688344-9688363 | MS.gene58786:CDS | 25.0% |
| !! | TTTGAATTATGTTGTTTACC+AGG | + | chr8.3:9688557-9688576 | MS.gene58786:intron | 25.0% |
| !!! | TATATTGATGGCTACAATTT+TGG | + | chr8.3:9688102-9688121 | MS.gene58786:intron | 25.0% |
| AAGTATGTGTGCAAAATTCA+TGG | + | chr8.3:9689469-9689488 | MS.gene58786:CDS | 30.0% | |
| ATAGTCAGGACTTAATTGTA+GGG | - | chr8.3:9689291-9689310 | None:intergenic | 30.0% | |
| ATGGAGTATATATTTGTAGG+TGG | + | chr8.3:9689211-9689230 | MS.gene58786:intron | 30.0% | |
| ATGTGACCGTTATAAATCAA+GGG | + | chr8.3:9688972-9688991 | MS.gene58786:intron | 30.0% | |
| ATTGAACATGTATATGTACC+TGG | - | chr8.3:9688404-9688423 | None:intergenic | 30.0% | |
| TATCTAATTCCACAAGAGAT+GGG | + | chr8.3:9689308-9689327 | MS.gene58786:CDS | 30.0% | |
| TATGTGACCGTTATAAATCA+AGG | + | chr8.3:9688971-9688990 | MS.gene58786:intron | 30.0% | |
| ! | TTTGGCACTATTGATAGTAT+AGG | - | chr8.3:9688583-9688602 | None:intergenic | 30.0% |
| !!! | CATTCTTTTTTGCATTCTCA+TGG | - | chr8.3:9688227-9688246 | None:intergenic | 30.0% |
| AACAAAGAGGAGATCTATGA+GGG | - | chr8.3:9689565-9689584 | None:intergenic | 35.0% | |
| AATGACAAGGTCAACAATTG+TGG | + | chr8.3:9689343-9689362 | MS.gene58786:CDS | 35.0% | |
| AATGGATAAAAGGTTCTTGG+AGG | - | chr8.3:9688683-9688702 | None:intergenic | 35.0% | |
| AGCAATGGATAAAAGGTTCT+TGG | - | chr8.3:9688686-9688705 | None:intergenic | 35.0% | |
| AGTTTCCTGATCCTTTGAAT+TGG | - | chr8.3:9688638-9688657 | None:intergenic | 35.0% | |
| ATATCCTTAAGTAGGGTGAA+AGG | - | chr8.3:9689262-9689281 | None:intergenic | 35.0% | |
| ATCTAATTCCACAAGAGATG+GGG | + | chr8.3:9689309-9689328 | MS.gene58786:CDS | 35.0% | |
| ATGTATATGTACCTGGACAT+TGG | - | chr8.3:9688397-9688416 | None:intergenic | 35.0% | |
| ATTGTTAGGAAGAGAAGAAG+TGG | + | chr8.3:9689440-9689459 | MS.gene58786:CDS | 35.0% | |
| CATATTCAGGATCATCATCA+GGG | + | chr8.3:9689387-9689406 | MS.gene58786:CDS | 35.0% | |
| CGGTATCCCTTGATTTATAA+CGG | - | chr8.3:9688981-9689000 | None:intergenic | 35.0% | |
| CTATCTAATTCCACAAGAGA+TGG | + | chr8.3:9689307-9689326 | MS.gene58786:CDS | 35.0% | |
| GATAGTCAGGACTTAATTGT+AGG | - | chr8.3:9689292-9689311 | None:intergenic | 35.0% | |
| GATCCAATGAGTTCATATTC+AGG | + | chr8.3:9689374-9689393 | MS.gene58786:CDS | 35.0% | |
| GATCCTGAATATGAACTCAT+TGG | - | chr8.3:9689380-9689399 | None:intergenic | 35.0% | |
| GGGATGAATTAGAAATGACA+AGG | + | chr8.3:9689330-9689349 | MS.gene58786:CDS | 35.0% | |
| GTCTTGCATATCCTTAAGTA+GGG | - | chr8.3:9689269-9689288 | None:intergenic | 35.0% | |
| TAACAAAGAGGAGATCTATG+AGG | - | chr8.3:9689566-9689585 | None:intergenic | 35.0% | |
| TACTATCAATAGTGCCAAAG+TGG | + | chr8.3:9688584-9688603 | MS.gene58786:CDS | 35.0% | |
| TATGAGAAGGAAACTGAACT+CGG | - | chr8.3:9689001-9689020 | None:intergenic | 35.0% | |
| TCATATTCAGGATCATCATC+AGG | + | chr8.3:9689386-9689405 | MS.gene58786:CDS | 35.0% | |
| TCTTGTGGAATTAGATAGTC+AGG | - | chr8.3:9689305-9689324 | None:intergenic | 35.0% | |
| AAGACCTTTCACCCTACTTA+AGG | + | chr8.3:9689255-9689274 | MS.gene58786:CDS | 40.0% | |
| CATAACGACGAACTTGAAGA+AGG | - | chr8.3:9688323-9688342 | None:intergenic | 40.0% | |
| CCAAGAGAGCAATGGATAAA+AGG | - | chr8.3:9688693-9688712 | None:intergenic | 40.0% | |
| CTTCTTGATGAACACCACTT+TGG | - | chr8.3:9688601-9688620 | None:intergenic | 40.0% | |
| GGTCTTGCATATCCTTAAGT+AGG | - | chr8.3:9689270-9689289 | None:intergenic | 40.0% | |
| TCTAATTCCACAAGAGATGG+GGG | + | chr8.3:9689310-9689329 | MS.gene58786:CDS | 40.0% | |
| TGGCATGCACAGAAATTGTT+AGG | + | chr8.3:9689426-9689445 | MS.gene58786:CDS | 40.0% | |
| TTAGGAAGAGAAGAAGTGGA+TGG | + | chr8.3:9689444-9689463 | MS.gene58786:CDS | 40.0% | |
| TTCCTGATCCTTTGAATTGG+CGG | - | chr8.3:9688635-9688654 | None:intergenic | 40.0% | |
| ! | CACTATTGATAGTATAGGCC+TGG | - | chr8.3:9688578-9688597 | None:intergenic | 40.0% |
| ! | CCTTTTATCCATTGCTCTCT+TGG | + | chr8.3:9688690-9688709 | MS.gene58786:CDS | 40.0% |
| AAACCAAAAGCCTGCATGGT+TGG | + | chr8.3:9688161-9688180 | MS.gene58786:CDS | 45.0% | |
| AACCGCCAATTCAAAGGATC+AGG | + | chr8.3:9688630-9688649 | MS.gene58786:CDS | 45.0% | |
| AACGACGAACTTGAAGAAGG+CGG | - | chr8.3:9688320-9688339 | None:intergenic | 45.0% | |
| AATTCATCCCCCATCTCTTG+TGG | - | chr8.3:9689320-9689339 | None:intergenic | 45.0% | |
| AGGGTCAGAGAATATGAGCA+TGG | + | chr8.3:9689406-9689425 | MS.gene58786:CDS | 45.0% | |
| CCTCAAAACCGCCAATTCAA+AGG | + | chr8.3:9688624-9688643 | MS.gene58786:CDS | 45.0% | |
| CGATGAGATGGAAAGCAATG+AGG | - | chr8.3:9688291-9688310 | None:intergenic | 45.0% | |
| TAAAGAGCTTCCAACCATGC+AGG | - | chr8.3:9688174-9688193 | None:intergenic | 45.0% | |
| TATAGACTGCACCAATGTCC+AGG | + | chr8.3:9688383-9688402 | MS.gene58786:CDS | 45.0% | |
| ! | CCTTTGAATTGGCGGTTTTG+AGG | - | chr8.3:9688627-9688646 | None:intergenic | 45.0% |
| !! | TGAATTTAATTATATAAAAA+AGG | + | chr8.3:9689036-9689055 | MS.gene58786:intron | 5.0% |
| !!! | TTCTTTTTTTTTATTTTTTA+TGG | + | chr8.3:9688790-9688809 | MS.gene58786:intron | 5.0% |
| AGGGAAACCAAAAGCCTGCA+TGG | + | chr8.3:9688157-9688176 | MS.gene58786:intron | 50.0% | |
| CCATTGCTCTCTTGGATGCA+AGG | + | chr8.3:9688698-9688717 | MS.gene58786:CDS | 50.0% | |
| CCTTGCATCCAAGAGAGCAA+TGG | - | chr8.3:9688701-9688720 | None:intergenic | 50.0% | |
| ! | CTTCCAACCATGCAGGCTTT+TGG | - | chr8.3:9688167-9688186 | None:intergenic | 50.0% |
| GACGAACTTGAAGAAGGCGG+TGG | - | chr8.3:9688317-9688336 | None:intergenic | 55.0% | |
| ! | AGGCGGTGGTAGCGATGAGA+TGG | - | chr8.3:9688303-9688322 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 9688042 | 9689586 | 9688042 | ID=MS.gene58786 |
| chr8.3 | mRNA | 9688042 | 9689586 | 9688042 | ID=MS.gene58786.t1;Parent=MS.gene58786 |
| chr8.3 | exon | 9688042 | 9688050 | 9688042 | ID=MS.gene58786.t1.exon1;Parent=MS.gene58786.t1 |
| chr8.3 | CDS | 9688042 | 9688050 | 9688042 | ID=cds.MS.gene58786.t1;Parent=MS.gene58786.t1 |
| chr8.3 | exon | 9688159 | 9688404 | 9688159 | ID=MS.gene58786.t1.exon2;Parent=MS.gene58786.t1 |
| chr8.3 | CDS | 9688159 | 9688404 | 9688159 | ID=cds.MS.gene58786.t1;Parent=MS.gene58786.t1 |
| chr8.3 | exon | 9688579 | 9688719 | 9688579 | ID=MS.gene58786.t1.exon3;Parent=MS.gene58786.t1 |
| chr8.3 | CDS | 9688579 | 9688719 | 9688579 | ID=cds.MS.gene58786.t1;Parent=MS.gene58786.t1 |
| chr8.3 | exon | 9689230 | 9689586 | 9689230 | ID=MS.gene58786.t1.exon4;Parent=MS.gene58786.t1 |
| chr8.3 | CDS | 9689230 | 9689586 | 9689230 | ID=cds.MS.gene58786.t1;Parent=MS.gene58786.t1 |
| Gene Sequence |
| Protein sequence |
