Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23184.t1 | AET02191.1 | 98.1 | 368 | 7 | 0 | 1 | 368 | 32 | 399 | 1.80E-192 | 681.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23184.t1 | P40941 | 74.8 | 385 | 77 | 3 | 4 | 368 | 1 | 385 | 1.9e-158 | 560.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23184.t1 | G7LDP4 | 98.1 | 368 | 7 | 0 | 1 | 368 | 32 | 399 | 1.3e-192 | 681.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049400 | MS.gene23184 | 0.833288 | 5.81E-56 | -1.69E-46 |
| MS.gene049757 | MS.gene23184 | -0.81434 | 1.62E-51 | -1.69E-46 |
| MS.gene050133 | MS.gene23184 | 0.885316 | 9.03E-72 | -1.69E-46 |
| MS.gene050426 | MS.gene23184 | 0.827143 | 1.84E-54 | -1.69E-46 |
| MS.gene050553 | MS.gene23184 | -0.810423 | 1.16E-50 | -1.69E-46 |
| MS.gene051552 | MS.gene23184 | 0.824039 | 1.00E-53 | -1.69E-46 |
| MS.gene052469 | MS.gene23184 | -0.808751 | 2.65E-50 | -1.69E-46 |
| MS.gene052540 | MS.gene23184 | 0.805069 | 1.59E-49 | -1.69E-46 |
| MS.gene054107 | MS.gene23184 | -0.800236 | 1.58E-48 | -1.69E-46 |
| MS.gene05556 | MS.gene23184 | -0.829308 | 5.53E-55 | -1.69E-46 |
| MS.gene057081 | MS.gene23184 | 0.820825 | 5.59E-53 | -1.69E-46 |
| MS.gene057494 | MS.gene23184 | 0.816634 | 5.00E-52 | -1.69E-46 |
| MS.gene058235 | MS.gene23184 | 0.809321 | 2.01E-50 | -1.69E-46 |
| MS.gene058418 | MS.gene23184 | 0.821381 | 4.16E-53 | -1.69E-46 |
| MS.gene059717 | MS.gene23184 | -0.820253 | 7.56E-53 | -1.69E-46 |
| MS.gene059868 | MS.gene23184 | -0.851191 | 1.04E-60 | -1.69E-46 |
| MS.gene060087 | MS.gene23184 | 0.818382 | 2.02E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 117 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGTGCTAAGTCCTTGTTTA+AGG | 0.144348 | 8.2:-62539051 | MS.gene23184:CDS |
| TAATCATCTCATCCTGGTTT+TGG | 0.193782 | 8.2:+62540526 | None:intergenic |
| TTGAAGCCAGTTCTCCTTAC+TGG | 0.211857 | 8.2:-62539753 | MS.gene23184:CDS |
| TTCTTTGCTAGCTTTGGTCT+TGG | 0.283922 | 8.2:-62539209 | MS.gene23184:CDS |
| GGCTTTGAACTTTGCATTCA+AGG | 0.320951 | 8.2:-62540096 | MS.gene23184:CDS |
| GCGGGAGCTGCAACAAAGAT+AGG | 0.324862 | 8.2:+62540648 | None:intergenic |
| CTTCTCCTAACTGTGTCAAT+TGG | 0.336850 | 8.2:+62539149 | None:intergenic |
| CCTCGTTCTTGAGGATTTGT+TGG | 0.337740 | 8.2:+62539072 | None:intergenic |
| GATAGTTTCTTTGCTAGCTT+TGG | 0.347055 | 8.2:-62539215 | MS.gene23184:CDS |
| GCATTACATGCTGGCATCAT+TGG | 0.360534 | 8.2:+62540687 | None:intergenic |
| GCAACATTCTGAACAAGATT+AGG | 0.362542 | 8.2:+62540780 | None:intergenic |
| ACAAGGATGGTTACTGGAAA+TGG | 0.366913 | 8.2:-62540040 | MS.gene23184:CDS |
| AGAAGGACAAGGATGGTTAC+TGG | 0.382727 | 8.2:-62540046 | MS.gene23184:CDS |
| CTTTGTTGTTGACTTTCTCA+TGG | 0.384159 | 8.2:-62540613 | MS.gene23184:CDS |
| CAAAAGCTTAATTCGTTCAA+TGG | 0.387505 | 8.2:+62540551 | None:intergenic |
| CTGGCAACTGATGGTATTGC+TGG | 0.388315 | 8.2:-62539852 | MS.gene23184:CDS |
| ATGTACCAAAGGAGGTCATT+TGG | 0.389033 | 8.2:-62540738 | MS.gene23184:CDS |
| CTCCGTGCCGTCGCTGGTGC+TGG | 0.395301 | 8.2:-62539011 | MS.gene23184:CDS |
| TTGGCCTCAGGAGGTGCTGC+TGG | 0.402435 | 8.2:-62540005 | MS.gene23184:CDS |
| ACAGTCACCGATTCCCTTGT+AGG | 0.403293 | 8.2:+62540482 | None:intergenic |
| CGCTGGTTACGACAAGTTAC+AGG | 0.404370 | 8.2:-62538982 | MS.gene23184:CDS |
| AACATCCTCCGTGCCGTCGC+TGG | 0.404618 | 8.2:-62539017 | MS.gene23184:CDS |
| TGTACCAAAGGAGGTCATTT+GGG | 0.407077 | 8.2:-62540737 | MS.gene23184:CDS |
| GGTGCTAAGTCCTTGTTTAA+GGG | 0.416541 | 8.2:-62539050 | MS.gene23184:CDS |
| CTTACCCAATTGACACAGTT+AGG | 0.421944 | 8.2:-62539154 | MS.gene23184:CDS |
| CAACATTCTGAACAAGATTA+GGG | 0.422674 | 8.2:+62540781 | None:intergenic |
| GAAAGTCGCCATGGTTGATC+AGG | 0.424580 | 8.2:-62540811 | MS.gene23184:CDS |
| TTGCTAGCTTTGGTCTTGGA+TGG | 0.425017 | 8.2:-62539205 | MS.gene23184:CDS |
| TGGCTCATCACCAATGGTGC+AGG | 0.431380 | 8.2:-62539185 | MS.gene23184:CDS |
| TTCTCCTAACTGTGTCAATT+GGG | 0.432018 | 8.2:+62539150 | None:intergenic |
| GAAATGGTTTGCTGGAAACT+TGG | 0.433799 | 8.2:-62540024 | MS.gene23184:CDS |
| CAAGGGAGTAGACAAAGAAA+AGG | 0.433806 | 8.2:+62539973 | None:intergenic |
| AACTCCCAAATGACCTCCTT+TGG | 0.434011 | 8.2:+62540733 | None:intergenic |
| AAAAGCTTAATTCGTTCAAT+GGG | 0.436520 | 8.2:+62540552 | None:intergenic |
| AAGTCCTTGTTTAAGGGAGC+TGG | 0.439974 | 8.2:-62539044 | MS.gene23184:CDS |
| CTTTGCATCATTTGCTAGAC+GGG | 0.443087 | 8.2:+62539938 | None:intergenic |
| GGTTACTGGAAATGGTTTGC+TGG | 0.444417 | 8.2:-62540032 | MS.gene23184:CDS |
| ATCATTGGATACTGAAATGC+AGG | 0.450957 | 8.2:+62540702 | None:intergenic |
| AGAAGAATGATGATGACATC+TGG | 0.454405 | 8.2:-62539131 | MS.gene23184:CDS |
| AGAGATCCAGTAAGGAGAAC+TGG | 0.459442 | 8.2:+62539747 | None:intergenic |
| AAGCGAACAACGGCCGATGA+AGG | 0.465896 | 8.2:-62540456 | MS.gene23184:CDS |
| TCTCCTTACTGGATCTCTGC+AGG | 0.476142 | 8.2:-62539742 | MS.gene23184:intron |
| AGATGCTAGCCCTGCACCAT+TGG | 0.477482 | 8.2:+62539175 | None:intergenic |
| GTTGCAGCTCCCGCTGAGAA+AGG | 0.477911 | 8.2:-62540639 | MS.gene23184:CDS |
| CGGGAGCTGCAACAAAGATA+GGG | 0.484005 | 8.2:+62540649 | None:intergenic |
| TTGCGGTGTTACCTCTCCAT+AGG | 0.487772 | 8.2:+62540424 | None:intergenic |
| GTGTATCGTGGTCTCTACTT+TGG | 0.490767 | 8.2:-62539789 | MS.gene23184:CDS |
| CAGCTTTAATCATCTCATCC+TGG | 0.491287 | 8.2:+62540520 | None:intergenic |
| TTTGCTGGAAACTTGGCCTC+AGG | 0.497193 | 8.2:-62540017 | MS.gene23184:CDS |
| AGTAAGGAGAACTGGCTTCA+AGG | 0.497841 | 8.2:+62539755 | None:intergenic |
| GTTGTTGACTTTCTCATGGG+TGG | 0.497881 | 8.2:-62540609 | MS.gene23184:CDS |
| ATAACTCAACTAACCTGAGT+AGG | 0.498897 | 8.2:+62540384 | None:intergenic |
| TTTGTTGTTGACTTTCTCAT+GGG | 0.500591 | 8.2:-62540612 | MS.gene23184:CDS |
| GATGCAAAGGCTGCAAAGAA+AGG | 0.508474 | 8.2:-62539924 | MS.gene23184:CDS |
| CATCCGTTATTTCCCTACTC+AGG | 0.512437 | 8.2:-62540397 | MS.gene23184:intron |
| GCTGGTGCTGGTGTGCTCGC+TGG | 0.514183 | 8.2:-62538999 | MS.gene23184:CDS |
| ACAAAGTTTCCTTTCTCAGC+GGG | 0.514560 | 8.2:+62540630 | None:intergenic |
| CTCGGCAAGAAGTACGGATC+CGG | 0.520238 | 8.2:-62538951 | MS.gene23184:CDS |
| CAGAATGTTGCACGCCAGAC+CGG | 0.522629 | 8.2:-62540768 | MS.gene23184:CDS |
| TAACCTGAGTAGGGAAATAA+CGG | 0.524143 | 8.2:+62540394 | None:intergenic |
| CCTTTGCATCATTTGCTAGA+CGG | 0.524216 | 8.2:+62539937 | None:intergenic |
| TCTGAGCCCTACAAGGGAAT+CGG | 0.525862 | 8.2:-62540489 | MS.gene23184:CDS |
| GCTGGAAACTTGGCCTCAGG+AGG | 0.526095 | 8.2:-62540014 | MS.gene23184:CDS |
| AGATGTTGAAACCACGGTAC+AGG | 0.527359 | 8.2:+62539829 | None:intergenic |
| GTTGTTGCAGCATTACATGC+TGG | 0.527648 | 8.2:+62540678 | None:intergenic |
| TGGATACTGAAATGCAGGGT+TGG | 0.528389 | 8.2:+62540707 | None:intergenic |
| TAGACTTTCTGAGCCCTACA+AGG | 0.529188 | 8.2:-62540496 | MS.gene23184:CDS |
| ATGAAGGTATTGTCTCCCTA+TGG | 0.529311 | 8.2:-62540440 | MS.gene23184:CDS |
| GCAGGAGGAAGACAATTTGA+TGG | 0.533866 | 8.2:-62539900 | MS.gene23184:CDS |
| ATAATGCTCGGCAAGAAGTA+CGG | 0.537875 | 8.2:-62538957 | MS.gene23184:CDS |
| TGCGGTGTTACCTCTCCATA+GGG | 0.537902 | 8.2:+62540425 | None:intergenic |
| AAGGCTGCAAAGAAAGGTGC+AGG | 0.538988 | 8.2:-62539918 | MS.gene23184:CDS |
| CAGTCACCGATTCCCTTGTA+GGG | 0.546422 | 8.2:+62540483 | None:intergenic |
| ACTTAGCACCCTCGTTCTTG+AGG | 0.547097 | 8.2:+62539063 | None:intergenic |
| TAGGGAGACAATACCTTCAT+CGG | 0.549059 | 8.2:+62540443 | None:intergenic |
| GGTTTCAACATCTCTTGTGT+CGG | 0.553553 | 8.2:-62539819 | MS.gene23184:CDS |
| AAGGGAGTAGACAAAGAAAA+GGG | 0.554552 | 8.2:+62539974 | None:intergenic |
| TCGTTCAATGGGAGCTGCAG+CGG | 0.558742 | 8.2:+62540563 | None:intergenic |
| TAACTCAACTAACCTGAGTA+GGG | 0.561724 | 8.2:+62540385 | None:intergenic |
| GAAATAACGGATGACATTTG+CGG | 0.563798 | 8.2:+62540407 | None:intergenic |
| CAGGATGAGATGATTAAAGC+TGG | 0.564426 | 8.2:-62540519 | MS.gene23184:CDS |
| AACAAAGTTTCCTTTCTCAG+CGG | 0.567621 | 8.2:+62540629 | None:intergenic |
| CACCAGCACCAGCGACGGCA+CGG | 0.568903 | 8.2:+62539009 | None:intergenic |
| GAGCACACCAGCACCAGCGA+CGG | 0.570287 | 8.2:+62539004 | None:intergenic |
| GACGGGTACGAGCATAGTCA+AGG | 0.572808 | 8.2:+62539955 | None:intergenic |
| CTTGGATGGCTCATCACCAA+TGG | 0.573594 | 8.2:-62539191 | MS.gene23184:CDS |
| GGTACATAGAAAGACCGGTC+TGG | 0.575870 | 8.2:+62540754 | None:intergenic |
| AAGTTACAGGTCATAATGCT+CGG | 0.582137 | 8.2:-62538969 | MS.gene23184:CDS |
| GATTTGTTGGAATGCATCGA+AGG | 0.585302 | 8.2:+62539085 | None:intergenic |
| CATTCAAGGACTACTTCAAG+AGG | 0.587339 | 8.2:-62540082 | MS.gene23184:CDS |
| CCGGTCTTTCTATGTACCAA+AGG | 0.601233 | 8.2:-62540749 | MS.gene23184:CDS |
| CCGTCTAGCAAATGATGCAA+AGG | 0.603443 | 8.2:-62539937 | MS.gene23184:CDS |
| GGCTCATCACCAATGGTGCA+GGG | 0.604403 | 8.2:-62539184 | MS.gene23184:CDS |
| GAACCTGCAGAGATCCAGTA+AGG | 0.606430 | 8.2:+62539739 | None:intergenic |
| GGCAAGAAGTACGGATCCGG+TGG | 0.611623 | 8.2:-62538948 | MS.gene23184:CDS |
| AAGAAGACACTGGCAACTGA+TGG | 0.618722 | 8.2:-62539861 | MS.gene23184:CDS |
| AATTTCAAGAAGGACAAGGA+TGG | 0.620049 | 8.2:-62540053 | MS.gene23184:CDS |
| AGCACCAGCAGCACCTCCTG+AGG | 0.623751 | 8.2:+62540001 | None:intergenic |
| TTTCAATTTCAAGAAGGACA+AGG | 0.627092 | 8.2:-62540057 | MS.gene23184:CDS |
| CCTTTGGTACATAGAAAGAC+CGG | 0.627821 | 8.2:+62540749 | None:intergenic |
| ATTGTTCAGGAAAGTCGCCA+TGG | 0.629939 | 8.2:-62540820 | None:intergenic |
| CACAAGAGATGTTGAAACCA+CGG | 0.637635 | 8.2:+62539823 | None:intergenic |
| GGGAGCTGCAACAAAGATAG+GGG | 0.642711 | 8.2:+62540650 | None:intergenic |
| CCAACAAATCCTCAAGAACG+AGG | 0.645399 | 8.2:-62539072 | MS.gene23184:CDS |
| GCTGCAAAGAAAGGTGCAGG+AGG | 0.645640 | 8.2:-62539915 | MS.gene23184:CDS |
| GGTATTGCTGGCCTGTACCG+TGG | 0.650837 | 8.2:-62539840 | MS.gene23184:CDS |
| AGACTTTCTGAGCCCTACAA+GGG | 0.654879 | 8.2:-62540495 | MS.gene23184:CDS |
| AGCACCAGCTCCCTTAAACA+AGG | 0.655144 | 8.2:+62539040 | None:intergenic |
| GTCGGAATCATTGTGTATCG+TGG | 0.657764 | 8.2:-62539801 | MS.gene23184:CDS |
| GGTATTGTCTCCCTATGGAG+AGG | 0.663367 | 8.2:-62540435 | MS.gene23184:CDS |
| ACGGGTACGAGCATAGTCAA+GGG | 0.668625 | 8.2:+62539956 | None:intergenic |
| GCGCTGAACCTGATCAACCA+TGG | 0.672127 | 8.2:+62540803 | None:intergenic |
| GTCTTTCTATGTACCAAAGG+AGG | 0.674751 | 8.2:-62540746 | MS.gene23184:CDS |
| CAACAAATCCTCAAGAACGA+GGG | 0.686427 | 8.2:-62539071 | MS.gene23184:CDS |
| CAGCACCAGCGACGGCACGG+AGG | 0.687741 | 8.2:+62539012 | None:intergenic |
| TGATGTCTACAAGAAGACAC+TGG | 0.694165 | 8.2:-62539871 | MS.gene23184:CDS |
| TCATTGGATACTGAAATGCA+GGG | 0.721142 | 8.2:+62540703 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAACTAAAAAATCAAAA+GGG | + | chr8.2:62539403-62539422 | None:intergenic | 15.0% |
| !! | GAAAGAACTAAAAAATCAAA+AGG | + | chr8.2:62539404-62539423 | None:intergenic | 20.0% |
| !! | TATAGAAATAGCTTATTCAT+AGG | - | chr8.2:62540343-62540362 | MS.gene23184:intron | 20.0% |
| !!! | TTTTTAGTTCTTTCAAATAG+AGG | - | chr8.2:62539410-62539429 | MS.gene23184:intron | 20.0% |
| ! | AAAAGCTTAATTCGTTCAAT+GGG | + | chr8.2:62539203-62539222 | None:intergenic | 25.0% |
| ! | ATAAAATGACACAAGAGATA+AGG | + | chr8.2:62540044-62540063 | None:intergenic | 25.0% |
| ! | TTTGTGATTCAAATTCTTCT+AGG | - | chr8.2:62539635-62539654 | MS.gene23184:intron | 25.0% |
| !!! | ATTCTAGTTCATATCAGTAT+TGG | - | chr8.2:62540109-62540128 | MS.gene23184:intron | 25.0% |
| !!! | CAACTTTTCTTGCTTTATTT+TGG | + | chr8.2:62540436-62540455 | None:intergenic | 25.0% |
| !!! | TCTTGCTTTATTTTGGTTTA+TGG | + | chr8.2:62540429-62540448 | None:intergenic | 25.0% |
| CAAAAGCTTAATTCGTTCAA+TGG | + | chr8.2:62539204-62539223 | None:intergenic | 30.0% | |
| CAACATTCTGAACAAGATTA+GGG | + | chr8.2:62538974-62538993 | None:intergenic | 30.0% | |
| CAAGCTTATAGACATGTTAT+CGG | + | chr8.2:62540226-62540245 | None:intergenic | 30.0% | |
| GAATACATATCAGCAAAGTT+AGG | + | chr8.2:62540093-62540112 | None:intergenic | 30.0% | |
| GTTAGTCGAACTAAAGAATT+TGG | + | chr8.2:62540071-62540090 | None:intergenic | 30.0% | |
| TTTCAATTTCAAGAAGGACA+AGG | - | chr8.2:62539695-62539714 | MS.gene23184:intron | 30.0% | |
| !! | ATCAGTATTGGTGTTATTGA+AGG | - | chr8.2:62540121-62540140 | MS.gene23184:intron | 30.0% |
| !! | CTTGTTTTCACAAAGAATCA+TGG | + | chr8.2:62540279-62540298 | None:intergenic | 30.0% |
| !! | TATGAAGTGTTGTCAAATAG+TGG | - | chr8.2:62539493-62539512 | MS.gene23184:intron | 30.0% |
| !! | TTTGTTGTTGACTTTCTCAT+GGG | - | chr8.2:62539140-62539159 | MS.gene23184:CDS | 30.0% |
| AAAAGTTTGAACTCAGACTC+GGG | + | chr8.2:62540474-62540493 | None:intergenic | 35.0% | |
| AAAGAATCATGGAGAGCTTA+TGG | + | chr8.2:62540268-62540287 | None:intergenic | 35.0% | |
| AACAAAGTTTCCTTTCTCAG+CGG | + | chr8.2:62539126-62539145 | None:intergenic | 35.0% | |
| AAGGGAGTAGACAAAGAAAA+GGG | + | chr8.2:62539781-62539800 | None:intergenic | 35.0% | |
| AAGTTACAGGTCATAATGCT+CGG | - | chr8.2:62540783-62540802 | MS.gene23184:CDS | 35.0% | |
| AATTTCAAGAAGGACAAGGA+TGG | - | chr8.2:62539699-62539718 | MS.gene23184:intron | 35.0% | |
| ATAACTCAACTAACCTGAGT+AGG | + | chr8.2:62539371-62539390 | None:intergenic | 35.0% | |
| ATCATTGGATACTGAAATGC+AGG | + | chr8.2:62539053-62539072 | None:intergenic | 35.0% | |
| CAAAAGTTTGAACTCAGACT+CGG | + | chr8.2:62540475-62540494 | None:intergenic | 35.0% | |
| CGATCTACAATTGACAACAA+TGG | - | chr8.2:62539558-62539577 | MS.gene23184:intron | 35.0% | |
| GCAACATTCTGAACAAGATT+AGG | + | chr8.2:62538975-62538994 | None:intergenic | 35.0% | |
| TAACCTGAGTAGGGAAATAA+CGG | + | chr8.2:62539361-62539380 | None:intergenic | 35.0% | |
| TAACTCAACTAACCTGAGTA+GGG | + | chr8.2:62539370-62539389 | None:intergenic | 35.0% | |
| TATTGTCTCTTGATCATTGC+AGG | - | chr8.2:62540515-62540534 | MS.gene23184:CDS | 35.0% | |
| TCATTGGATACTGAAATGCA+GGG | + | chr8.2:62539052-62539071 | None:intergenic | 35.0% | |
| TTCAGCTGTTTATCCAAACA+TGG | - | chr8.2:62540403-62540422 | MS.gene23184:CDS | 35.0% | |
| TTCTCCTAACTGTGTCAATT+GGG | + | chr8.2:62540605-62540624 | None:intergenic | 35.0% | |
| ! | AAGCACTTGTGAGACTATTT+TGG | - | chr8.2:62540183-62540202 | MS.gene23184:intron | 35.0% |
| ! | AGAAGAATGATGATGACATC+TGG | - | chr8.2:62540621-62540640 | MS.gene23184:CDS | 35.0% |
| ! | GAGGCTTTTCAATTTCAAGA+AGG | - | chr8.2:62539689-62539708 | MS.gene23184:intron | 35.0% |
| ! | GATAGTTTCTTTGCTAGCTT+TGG | - | chr8.2:62540537-62540556 | MS.gene23184:CDS | 35.0% |
| ! | TAAGCTTTTGATCCAAAACC+AGG | - | chr8.2:62539214-62539233 | MS.gene23184:CDS | 35.0% |
| ! | TAATCATCTCATCCTGGTTT+TGG | + | chr8.2:62539229-62539248 | None:intergenic | 35.0% |
| ! | TGTCTCTTCACAACTCTTTT+TGG | - | chr8.2:62539591-62539610 | MS.gene23184:intron | 35.0% |
| !! | CTTTGTTGTTGACTTTCTCA+TGG | - | chr8.2:62539139-62539158 | MS.gene23184:CDS | 35.0% |
| !! | GAAATAACGGATGACATTTG+CGG | + | chr8.2:62539348-62539367 | None:intergenic | 35.0% |
| !! | TGACTGTTTTAAGCGAACAA+CGG | - | chr8.2:62539286-62539305 | MS.gene23184:intron | 35.0% |
| !!! | TTTTGGTTTATGGCCATGTT+TGG | + | chr8.2:62540419-62540438 | None:intergenic | 35.0% |
| ACAAAGTTTCCTTTCTCAGC+GGG | + | chr8.2:62539125-62539144 | None:intergenic | 40.0% | |
| ACAAGGATGGTTACTGGAAA+TGG | - | chr8.2:62539712-62539731 | MS.gene23184:intron | 40.0% | |
| ATAATGCTCGGCAAGAAGTA+CGG | - | chr8.2:62540795-62540814 | MS.gene23184:CDS | 40.0% | |
| ATCATGGAGAGCTTATGGAA+TGG | + | chr8.2:62540263-62540282 | None:intergenic | 40.0% | |
| ATGTACCAAAGGAGGTCATT+TGG | - | chr8.2:62539014-62539033 | MS.gene23184:CDS | 40.0% | |
| CAACAAATCCTCAAGAACGA+GGG | - | chr8.2:62540681-62540700 | MS.gene23184:CDS | 40.0% | |
| CAAGGGAGTAGACAAAGAAA+AGG | + | chr8.2:62539782-62539801 | None:intergenic | 40.0% | |
| CACAAGAGATGTTGAAACCA+CGG | + | chr8.2:62539932-62539951 | None:intergenic | 40.0% | |
| CAGGATGAGATGATTAAAGC+TGG | - | chr8.2:62539233-62539252 | MS.gene23184:intron | 40.0% | |
| CATTCAAGGACTACTTCAAG+AGG | - | chr8.2:62539670-62539689 | MS.gene23184:intron | 40.0% | |
| CCTTTGGTACATAGAAAGAC+CGG | + | chr8.2:62539006-62539025 | None:intergenic | 40.0% | |
| CTTACCCAATTGACACAGTT+AGG | - | chr8.2:62540598-62540617 | MS.gene23184:CDS | 40.0% | |
| CTTCTCCTAACTGTGTCAAT+TGG | + | chr8.2:62540606-62540625 | None:intergenic | 40.0% | |
| GGTTTCAACATCTCTTGTGT+CGG | - | chr8.2:62539933-62539952 | MS.gene23184:CDS | 40.0% | |
| GTCTTTCTATGTACCAAAGG+AGG | - | chr8.2:62539006-62539025 | MS.gene23184:CDS | 40.0% | |
| TAGGGAGACAATACCTTCAT+CGG | + | chr8.2:62539312-62539331 | None:intergenic | 40.0% | |
| TGATGTCTACAAGAAGACAC+TGG | - | chr8.2:62539881-62539900 | MS.gene23184:CDS | 40.0% | |
| TGTACCAAAGGAGGTCATTT+GGG | - | chr8.2:62539015-62539034 | MS.gene23184:CDS | 40.0% | |
| ! | CAGCTTTAATCATCTCATCC+TGG | + | chr8.2:62539235-62539254 | None:intergenic | 40.0% |
| ! | CCTTTGCATCATTTGCTAGA+CGG | + | chr8.2:62539818-62539837 | None:intergenic | 40.0% |
| ! | CTTTGCATCATTTGCTAGAC+GGG | + | chr8.2:62539817-62539836 | None:intergenic | 40.0% |
| ! | GGTGCTAAGTCCTTGTTTAA+GGG | - | chr8.2:62540702-62540721 | MS.gene23184:CDS | 40.0% |
| !! | ATGAAGGTATTGTCTCCCTA+TGG | - | chr8.2:62539312-62539331 | MS.gene23184:intron | 40.0% |
| !! | GAAATGGTTTGCTGGAAACT+TGG | - | chr8.2:62539728-62539747 | MS.gene23184:intron | 40.0% |
| !! | GAAGTGTTGTCAAATAGTGG+CGG | - | chr8.2:62539496-62539515 | MS.gene23184:intron | 40.0% |
| !! | GATTTGTTGGAATGCATCGA+AGG | + | chr8.2:62540670-62540689 | None:intergenic | 40.0% |
| !! | GGCTTTGAACTTTGCATTCA+AGG | - | chr8.2:62539656-62539675 | MS.gene23184:intron | 40.0% |
| !! | TTCTTTGCTAGCTTTGGTCT+TGG | - | chr8.2:62540543-62540562 | MS.gene23184:CDS | 40.0% |
| AACTCCCAAATGACCTCCTT+TGG | + | chr8.2:62539022-62539041 | None:intergenic | 45.0% | |
| AAGAAGACACTGGCAACTGA+TGG | - | chr8.2:62539891-62539910 | MS.gene23184:CDS | 45.0% | |
| AGAAGGACAAGGATGGTTAC+TGG | - | chr8.2:62539706-62539725 | MS.gene23184:intron | 45.0% | |
| AGACTTTCTGAGCCCTACAA+GGG | - | chr8.2:62539257-62539276 | MS.gene23184:intron | 45.0% | |
| AGAGATCCAGTAAGGAGAAC+TGG | + | chr8.2:62540008-62540027 | None:intergenic | 45.0% | |
| AGATGTTGAAACCACGGTAC+AGG | + | chr8.2:62539926-62539945 | None:intergenic | 45.0% | |
| CCAACAAATCCTCAAGAACG+AGG | - | chr8.2:62540680-62540699 | MS.gene23184:CDS | 45.0% | |
| CCGGTCTTTCTATGTACCAA+AGG | - | chr8.2:62539003-62539022 | MS.gene23184:CDS | 45.0% | |
| CCGTCTAGCAAATGATGCAA+AGG | - | chr8.2:62539815-62539834 | MS.gene23184:CDS | 45.0% | |
| CCTCGTTCTTGAGGATTTGT+TGG | + | chr8.2:62540683-62540702 | None:intergenic | 45.0% | |
| GATGCAAAGGCTGCAAAGAA+AGG | - | chr8.2:62539828-62539847 | MS.gene23184:CDS | 45.0% | |
| GCAGGAGGAAGACAATTTGA+TGG | - | chr8.2:62539852-62539871 | MS.gene23184:CDS | 45.0% | |
| GCATTACATGCTGGCATCAT+TGG | + | chr8.2:62539068-62539087 | None:intergenic | 45.0% | |
| GTCGGAATCATTGTGTATCG+TGG | - | chr8.2:62539951-62539970 | MS.gene23184:CDS | 45.0% | |
| GTGTATCGTGGTCTCTACTT+TGG | - | chr8.2:62539963-62539982 | MS.gene23184:CDS | 45.0% | |
| GTTGTTGCAGCATTACATGC+TGG | + | chr8.2:62539077-62539096 | None:intergenic | 45.0% | |
| TAGACTTTCTGAGCCCTACA+AGG | - | chr8.2:62539256-62539275 | MS.gene23184:intron | 45.0% | |
| TGGATACTGAAATGCAGGGT+TGG | + | chr8.2:62539048-62539067 | None:intergenic | 45.0% | |
| TTGAAGCCAGTTCTCCTTAC+TGG | - | chr8.2:62539999-62540018 | MS.gene23184:CDS | 45.0% | |
| ! | AAGTCCTTGTTTAAGGGAGC+TGG | - | chr8.2:62540708-62540727 | MS.gene23184:CDS | 45.0% |
| ! | AGTAAGGAGAACTGGCTTCA+AGG | + | chr8.2:62540000-62540019 | None:intergenic | 45.0% |
| ! | CATCCGTTATTTCCCTACTC+AGG | - | chr8.2:62539355-62539374 | MS.gene23184:intron | 45.0% |
| ! | GGGTGCTAAGTCCTTGTTTA+AGG | - | chr8.2:62540701-62540720 | MS.gene23184:CDS | 45.0% |
| ! | GGTTACTGGAAATGGTTTGC+TGG | - | chr8.2:62539720-62539739 | MS.gene23184:intron | 45.0% |
| !! | GTTGTTGACTTTCTCATGGG+TGG | - | chr8.2:62539143-62539162 | MS.gene23184:CDS | 45.0% |
| !! | TTGCTAGCTTTGGTCTTGGA+TGG | - | chr8.2:62540547-62540566 | MS.gene23184:CDS | 45.0% |
| ACGGGTACGAGCATAGTCAA+GGG | + | chr8.2:62539799-62539818 | None:intergenic | 50.0% | |
| ACTTAGCACCCTCGTTCTTG+AGG | + | chr8.2:62540692-62540711 | None:intergenic | 50.0% | |
| AGCACCAGCTCCCTTAAACA+AGG | + | chr8.2:62540715-62540734 | None:intergenic | 50.0% | |
| CGGGAGCTGCAACAAAGATA+GGG | + | chr8.2:62539106-62539125 | None:intergenic | 50.0% | |
| CTGGCAACTGATGGTATTGC+TGG | - | chr8.2:62539900-62539919 | MS.gene23184:CDS | 50.0% | |
| CTTGGATGGCTCATCACCAA+TGG | - | chr8.2:62540561-62540580 | MS.gene23184:CDS | 50.0% | |
| GAAAGTCGCCATGGTTGATC+AGG | - | chr8.2:62538941-62538960 | MS.gene23184:CDS | 50.0% | |
| GAACCTGCAGAGATCCAGTA+AGG | + | chr8.2:62540016-62540035 | None:intergenic | 50.0% | |
| GGGAGCTGCAACAAAGATAG+GGG | + | chr8.2:62539105-62539124 | None:intergenic | 50.0% | |
| GGTACATAGAAAGACCGGTC+TGG | + | chr8.2:62539001-62539020 | None:intergenic | 50.0% | |
| GGTATTGTCTCCCTATGGAG+AGG | - | chr8.2:62539317-62539336 | MS.gene23184:intron | 50.0% | |
| TCTCCTTACTGGATCTCTGC+AGG | - | chr8.2:62540010-62540029 | MS.gene23184:CDS | 50.0% | |
| TCTGAGCCCTACAAGGGAAT+CGG | - | chr8.2:62539263-62539282 | MS.gene23184:intron | 50.0% | |
| TGTCAAATAGTGGCGGCACT+GGG | - | chr8.2:62539503-62539522 | MS.gene23184:intron | 50.0% | |
| TTGTCAAATAGTGGCGGCAC+TGG | - | chr8.2:62539502-62539521 | MS.gene23184:intron | 50.0% | |
| TTTGCTGGAAACTTGGCCTC+AGG | - | chr8.2:62539735-62539754 | MS.gene23184:intron | 50.0% | |
| ! | AAGGCTGCAAAGAAAGGTGC+AGG | - | chr8.2:62539834-62539853 | MS.gene23184:CDS | 50.0% |
| ! | CGCTGGTTACGACAAGTTAC+AGG | - | chr8.2:62540770-62540789 | MS.gene23184:CDS | 50.0% |
| !! | ACAGTCACCGATTCCCTTGT+AGG | + | chr8.2:62539273-62539292 | None:intergenic | 50.0% |
| !! | CAGTCACCGATTCCCTTGTA+GGG | + | chr8.2:62539272-62539291 | None:intergenic | 50.0% |
| !! | TGCGGTGTTACCTCTCCATA+GGG | + | chr8.2:62539330-62539349 | None:intergenic | 50.0% |
| !! | TTGCGGTGTTACCTCTCCAT+AGG | + | chr8.2:62539331-62539350 | None:intergenic | 50.0% |
| AAGCGAACAACGGCCGATGA+AGG | - | chr8.2:62539296-62539315 | MS.gene23184:intron | 55.0% | |
| AGATGCTAGCCCTGCACCAT+TGG | + | chr8.2:62540580-62540599 | None:intergenic | 55.0% | |
| CAGAATGTTGCACGCCAGAC+CGG | - | chr8.2:62538984-62539003 | MS.gene23184:CDS | 55.0% | |
| GACGGGTACGAGCATAGTCA+AGG | + | chr8.2:62539800-62539819 | None:intergenic | 55.0% | |
| GCGCTGAACCTGATCAACCA+TGG | + | chr8.2:62538952-62538971 | None:intergenic | 55.0% | |
| GCGGGAGCTGCAACAAAGAT+AGG | + | chr8.2:62539107-62539126 | None:intergenic | 55.0% | |
| GGCTCATCACCAATGGTGCA+GGG | - | chr8.2:62540568-62540587 | MS.gene23184:CDS | 55.0% | |
| TCGTTCAATGGGAGCTGCAG+CGG | + | chr8.2:62539192-62539211 | None:intergenic | 55.0% | |
| TGGCTCATCACCAATGGTGC+AGG | - | chr8.2:62540567-62540586 | MS.gene23184:CDS | 55.0% | |
| ! | CTCGGCAAGAAGTACGGATC+CGG | - | chr8.2:62540801-62540820 | MS.gene23184:CDS | 55.0% |
| ! | GCTGCAAAGAAAGGTGCAGG+AGG | - | chr8.2:62539837-62539856 | MS.gene23184:CDS | 55.0% |
| GCTGGAAACTTGGCCTCAGG+AGG | - | chr8.2:62539738-62539757 | MS.gene23184:intron | 60.0% | |
| GTTGCAGCTCCCGCTGAGAA+AGG | - | chr8.2:62539113-62539132 | MS.gene23184:CDS | 60.0% | |
| ! | GGCAAGAAGTACGGATCCGG+TGG | - | chr8.2:62540804-62540823 | MS.gene23184:CDS | 60.0% |
| ! | GGTATTGCTGGCCTGTACCG+TGG | - | chr8.2:62539912-62539931 | MS.gene23184:CDS | 60.0% |
| AACATCCTCCGTGCCGTCGC+TGG | - | chr8.2:62540735-62540754 | MS.gene23184:CDS | 65.0% | |
| AGCACCAGCAGCACCTCCTG+AGG | + | chr8.2:62539754-62539773 | None:intergenic | 65.0% | |
| GAGCACACCAGCACCAGCGA+CGG | + | chr8.2:62540751-62540770 | None:intergenic | 65.0% | |
| !! | TTGGCCTCAGGAGGTGCTGC+TGG | - | chr8.2:62539747-62539766 | MS.gene23184:CDS | 65.0% |
| CACCAGCACCAGCGACGGCA+CGG | + | chr8.2:62540746-62540765 | None:intergenic | 70.0% | |
| !! | GCTGGTGCTGGTGTGCTCGC+TGG | - | chr8.2:62540753-62540772 | MS.gene23184:CDS | 70.0% |
| CAGCACCAGCGACGGCACGG+AGG | + | chr8.2:62540743-62540762 | None:intergenic | 75.0% | |
| CTCCGTGCCGTCGCTGGTGC+TGG | - | chr8.2:62540741-62540760 | MS.gene23184:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 62538941 | 62540833 | 62538941 | ID=MS.gene23184 |
| chr8.2 | mRNA | 62538941 | 62540833 | 62538941 | ID=MS.gene23184.t1;Parent=MS.gene23184 |
| chr8.2 | exon | 62540398 | 62540833 | 62540398 | ID=MS.gene23184.t1.exon1;Parent=MS.gene23184.t1 |
| chr8.2 | CDS | 62540398 | 62540833 | 62540398 | ID=cds.MS.gene23184.t1;Parent=MS.gene23184.t1 |
| chr8.2 | exon | 62539743 | 62540117 | 62539743 | ID=MS.gene23184.t1.exon2;Parent=MS.gene23184.t1 |
| chr8.2 | CDS | 62539743 | 62540117 | 62539743 | ID=cds.MS.gene23184.t1;Parent=MS.gene23184.t1 |
| chr8.2 | exon | 62538941 | 62539237 | 62538941 | ID=MS.gene23184.t1.exon3;Parent=MS.gene23184.t1 |
| chr8.2 | CDS | 62538941 | 62539237 | 62538941 | ID=cds.MS.gene23184.t1;Parent=MS.gene23184.t1 |
| Gene Sequence |
| Protein sequence |
