Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058167.t1 | XP_003591857.2 | 96.2 | 320 | 12 | 0 | 1 | 320 | 1 | 320 | 2.10E-173 | 618.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058167.t1 | Q8GXG1 | 80.0 | 325 | 60 | 1 | 1 | 320 | 1 | 325 | 2.0e-148 | 526.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058167.t1 | G7I4Z5 | 96.2 | 320 | 12 | 0 | 1 | 320 | 1 | 320 | 1.5e-173 | 618.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene058167 | MS.gene033041 | PPI |
| MS.gene044475 | MS.gene058167 | PPI |
| MS.gene063515 | MS.gene058167 | PPI |
| MS.gene03345 | MS.gene058167 | PPI |
| MS.gene033042 | MS.gene058167 | PPI |
| MS.gene038824 | MS.gene058167 | PPI |
| MS.gene038825 | MS.gene058167 | PPI |
| MS.gene044476 | MS.gene058167 | PPI |
| MS.gene063514 | MS.gene058167 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058167.t1 | MTR_1g094030 | 96.250 | 320 | 12 | 0 | 1 | 320 | 1 | 320 | 0.0 | 630 |
| MS.gene058167.t1 | MTR_3g102370 | 86.646 | 322 | 41 | 1 | 1 | 320 | 1 | 322 | 0.0 | 577 |
| MS.gene058167.t1 | MTR_1g018760 | 82.154 | 325 | 53 | 1 | 1 | 320 | 1 | 325 | 0.0 | 548 |
| MS.gene058167.t1 | MTR_4g109900 | 56.656 | 323 | 130 | 2 | 2 | 319 | 1 | 318 | 2.23e-126 | 364 |
| MS.gene058167.t1 | MTR_4g109920 | 56.698 | 321 | 134 | 3 | 2 | 319 | 1 | 319 | 3.29e-123 | 356 |
| MS.gene058167.t1 | MTR_8g031580 | 28.664 | 307 | 170 | 8 | 6 | 275 | 23 | 317 | 1.77e-23 | 99.4 |
| MS.gene058167.t1 | MTR_8g031580 | 28.664 | 307 | 170 | 8 | 6 | 275 | 23 | 317 | 4.24e-23 | 99.0 |
| MS.gene058167.t1 | MTR_3g008180 | 28.889 | 270 | 162 | 11 | 75 | 319 | 85 | 349 | 2.15e-16 | 79.3 |
| MS.gene058167.t1 | MTR_3g008180 | 28.968 | 252 | 149 | 11 | 93 | 319 | 4 | 250 | 4.50e-13 | 68.6 |
| MS.gene058167.t1 | MTR_8g031580 | 27.074 | 229 | 120 | 7 | 85 | 276 | 1 | 219 | 1.84e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058167.t1 | AT3G16150 | 80.000 | 325 | 60 | 1 | 1 | 320 | 1 | 325 | 0.0 | 536 |
| MS.gene058167.t1 | AT5G08100 | 56.250 | 320 | 131 | 3 | 1 | 319 | 1 | 312 | 2.10e-123 | 356 |
| MS.gene058167.t1 | AT5G08100 | 55.833 | 240 | 98 | 2 | 80 | 319 | 1 | 232 | 2.93e-90 | 269 |
| MS.gene058167.t1 | AT4G00590 | 25.974 | 308 | 193 | 6 | 6 | 280 | 15 | 320 | 4.10e-19 | 87.8 |
| MS.gene058167.t1 | AT5G61540 | 26.316 | 285 | 165 | 9 | 69 | 319 | 82 | 355 | 1.16e-16 | 80.1 |
| MS.gene058167.t1 | AT4G00590 | 25.503 | 298 | 192 | 6 | 6 | 280 | 15 | 305 | 1.08e-15 | 77.4 |
| MS.gene058167.t1 | AT5G61540 | 26.437 | 261 | 147 | 9 | 93 | 319 | 4 | 253 | 4.02e-14 | 71.6 |
| MS.gene058167.t1 | AT5G61540 | 26.437 | 261 | 147 | 9 | 93 | 319 | 4 | 253 | 4.02e-14 | 71.6 |
Find 95 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCATACCTAGGCTTCTC+TGG | 0.212343 | 1.4:-73506343 | MS.gene058167:CDS |
| AGAAGATGTGGTGCTGTTTC+TGG | 0.252401 | 1.4:-73506424 | MS.gene058167:CDS |
| CTTACTTATTGTCTTAATAT+TGG | 0.263069 | 1.4:-73508442 | MS.gene058167:CDS |
| TTCAGCATACCAACATTATC+AGG | 0.310050 | 1.4:+73506152 | None:intergenic |
| GGCTCAAGGATGTGAAAATA+TGG | 0.311037 | 1.4:-73505537 | MS.gene058167:CDS |
| GAAGTTGTTTGGCTTCTTCC+TGG | 0.311187 | 1.4:+73508464 | None:intergenic |
| GTCATGGAATACAAAGGTTT+TGG | 0.317632 | 1.4:-73505700 | MS.gene058167:CDS |
| AATTGTAATGGGATGTTTAG+AGG | 0.341877 | 1.4:-73505577 | MS.gene058167:CDS |
| ACAATAAGTAAGAAGTTGTT+TGG | 0.346443 | 1.4:+73508453 | None:intergenic |
| CGACTTGATGAAGGGTTTGC+TGG | 0.352010 | 1.4:-73505643 | MS.gene058167:CDS |
| GCTTATGGATTTAATTGTAA+TGG | 0.364204 | 1.4:-73505589 | MS.gene058167:CDS |
| CTTATGGATTTAATTGTAAT+GGG | 0.371148 | 1.4:-73505588 | MS.gene058167:CDS |
| TGGCGTTGTGGTGGGAGATT+AGG | 0.373934 | 1.4:+73508484 | None:intergenic |
| AGCAAGGGTGAAGTGGCTTA+TGG | 0.388811 | 1.4:-73505604 | MS.gene058167:CDS |
| TTGCTAGGGTGTGGATATTG+AGG | 0.391771 | 1.4:-73506195 | MS.gene058167:intron |
| CATGATGCTAGCCTCCATTT+CGG | 0.392833 | 1.4:+73506459 | None:intergenic |
| ACCACACACCCGACGGTCTC+TGG | 0.394019 | 1.4:+73505910 | None:intergenic |
| AGAGGTGTTGCTACTGAGAA+TGG | 0.394764 | 1.4:-73505559 | MS.gene058167:CDS |
| AGCAAAAGGAACAGCCGAAA+TGG | 0.413445 | 1.4:-73506473 | MS.gene058167:CDS |
| GGCAGAGAAAATGGTTGGTT+GGG | 0.429290 | 1.4:-73508539 | None:intergenic |
| TGTGCCGCTGCAACATCAAC+CGG | 0.444428 | 1.4:-73505868 | MS.gene058167:CDS |
| AGAAGAATTTGCGAGGGAAC+AGG | 0.446121 | 1.4:-73506317 | MS.gene058167:intron |
| GACCGTCGGGTGTGTGGTGG+TGG | 0.448465 | 1.4:-73505905 | MS.gene058167:CDS |
| CGAAGTCCACGGCCTCTTGA+AGG | 0.450589 | 1.4:+73505677 | None:intergenic |
| GGATCTGCTTTGACAGCAAA+AGG | 0.455548 | 1.4:-73506487 | MS.gene058167:CDS |
| AACAAAATGAGTGGTCGAAT+TGG | 0.461763 | 1.4:-73505835 | MS.gene058167:CDS |
| ATTGCTGTGCATGGTGGCGC+AGG | 0.462373 | 1.4:-73508514 | MS.gene058167:CDS |
| GGTTGGGCTATTGCTGTGCA+TGG | 0.462380 | 1.4:-73508523 | MS.gene058167:CDS |
| CTTCTTCCTGGCGTTGTGGT+GGG | 0.462522 | 1.4:+73508476 | None:intergenic |
| ATTGGTGACTCACCTATCAT+AGG | 0.464249 | 1.4:-73505817 | MS.gene058167:CDS |
| AAGAGTCCACTACAAATGAA+TGG | 0.464894 | 1.4:-73505955 | MS.gene058167:CDS |
| GGAGTCTCTTGCACTGGTGA+AGG | 0.465867 | 1.4:-73505766 | MS.gene058167:CDS |
| GAGTCTCTTGCACTGGTGAA+GGG | 0.467452 | 1.4:-73505765 | MS.gene058167:CDS |
| ATCAAACATCGACTTGATGA+AGG | 0.469254 | 1.4:-73505652 | MS.gene058167:CDS |
| ATTCATACCTAGGCTTCTCT+GGG | 0.470246 | 1.4:-73506342 | MS.gene058167:CDS |
| AAAGGAAGCAAACACAATTC+TGG | 0.470294 | 1.4:-73506123 | MS.gene058167:intron |
| GAGGTGTTGCTACTGAGAAT+GGG | 0.494569 | 1.4:-73505558 | MS.gene058167:CDS |
| GCTTCTTCCTGGCGTTGTGG+TGG | 0.496434 | 1.4:+73508475 | None:intergenic |
| ACAAGGCGAGCAAGTGAGAC+AGG | 0.496854 | 1.4:+73506382 | None:intergenic |
| AGAGTCCACTACAAATGAAT+GGG | 0.500649 | 1.4:-73505954 | MS.gene058167:CDS |
| CTCACTTGCTCGCCTTGTCA+TGG | 0.505877 | 1.4:-73506377 | MS.gene058167:CDS |
| GGGCAGAGAAAATGGTTGGT+TGG | 0.506049 | 1.4:-73508540 | None:intergenic |
| TAATCTCCCACCACAACGCC+AGG | 0.511047 | 1.4:-73508482 | MS.gene058167:CDS |
| TCTTATTGCTGTGTCTAGCA+AGG | 0.511218 | 1.4:-73505620 | MS.gene058167:CDS |
| TCTGGAGAATAAGCGCTTAG+TGG | 0.513544 | 1.4:+73505928 | None:intergenic |
| CTTATTCTCCAGAGACCGTC+GGG | 0.520348 | 1.4:-73505918 | MS.gene058167:CDS |
| GACATCGACAGCAGAACCAT+TGG | 0.526631 | 1.4:+73508402 | None:intergenic |
| GCGTGAGGTGGCAGCAGTCA+TGG | 0.527369 | 1.4:-73505716 | MS.gene058167:CDS |
| TCCAGAGACCGTCGGGTGTG+TGG | 0.528715 | 1.4:-73505911 | MS.gene058167:CDS |
| GTGTGTGGAGTCTCTTGCAC+TGG | 0.529919 | 1.4:-73505772 | MS.gene058167:CDS |
| GGCAGCCCATTCATTTGTAG+TGG | 0.541606 | 1.4:+73505949 | None:intergenic |
| ATATCTGCTCTCCGTTCCAA+TGG | 0.541714 | 1.4:-73508418 | MS.gene058167:CDS |
| AGTCTCTTGCACTGGTGAAG+GGG | 0.544027 | 1.4:-73505764 | MS.gene058167:CDS |
| GACTCACCTATCATAGGCGC+TGG | 0.545765 | 1.4:-73505811 | MS.gene058167:CDS |
| TGGCACTCTTGCGCGTGAGG+TGG | 0.551925 | 1.4:-73505728 | MS.gene058167:CDS |
| ACGTGGCACTCTTGCGCGTG+AGG | 0.552881 | 1.4:-73505731 | MS.gene058167:CDS |
| CGAAATGGAGGCTAGCATCA+TGG | 0.562007 | 1.4:-73506458 | MS.gene058167:CDS |
| CTCTTGCACTGGTGAAGGGG+AGG | 0.567376 | 1.4:-73505761 | MS.gene058167:CDS |
| TACGTTCCAGCGCCTATGAT+AGG | 0.569371 | 1.4:+73505805 | None:intergenic |
| CTTATTGCTGTGTCTAGCAA+GGG | 0.570797 | 1.4:-73505619 | MS.gene058167:CDS |
| CTTCTGCCCCAGAGAAGCCT+AGG | 0.570888 | 1.4:+73506335 | None:intergenic |
| TGTGTCTAGCAAGGGTGAAG+TGG | 0.572734 | 1.4:-73505611 | MS.gene058167:CDS |
| AAGTCCCCTCATTCATACCT+AGG | 0.579675 | 1.4:-73506352 | MS.gene058167:CDS |
| AGAAGCCTAGGTATGAATGA+GGG | 0.579780 | 1.4:+73506347 | None:intergenic |
| TGTGCATGGTGGCGCAGGTG+TGG | 0.580212 | 1.4:-73508509 | MS.gene058167:CDS |
| GAGAAGCCTAGGTATGAATG+AGG | 0.580849 | 1.4:+73506346 | None:intergenic |
| TGGTGGTGGACAGTGAAGGA+AGG | 0.585184 | 1.4:-73505891 | MS.gene058167:CDS |
| TTGGCTTCTTCCTGGCGTTG+TGG | 0.586140 | 1.4:+73508472 | None:intergenic |
| TTCATCACTCCTGATAATGT+TGG | 0.587952 | 1.4:-73506161 | MS.gene058167:CDS |
| TCAAACATCGACTTGATGAA+GGG | 0.593635 | 1.4:-73505651 | MS.gene058167:CDS |
| TGCTACTGAGAATGGGCTCA+AGG | 0.601739 | 1.4:-73505551 | MS.gene058167:CDS |
| AAAAGGAACAGCCGAAATGG+AGG | 0.605519 | 1.4:-73506470 | MS.gene058167:CDS |
| TCCTCCGGTTGATGTTGCAG+CGG | 0.606947 | 1.4:+73505864 | None:intergenic |
| CCTAGGGCAGAGAAAATGGT+TGG | 0.607033 | 1.4:-73508544 | None:intergenic |
| AGAGACCGTCGGGTGTGTGG+TGG | 0.610480 | 1.4:-73505908 | MS.gene058167:CDS |
| CCTCTGTTCAATTCTGCGCG+TGG | 0.612541 | 1.4:-73506508 | MS.gene058167:CDS |
| CTGGGGCAGAAGAATTTGCG+AGG | 0.617234 | 1.4:-73506324 | MS.gene058167:CDS |
| GAAGCCTAGGTATGAATGAG+GGG | 0.629698 | 1.4:+73506348 | None:intergenic |
| GCTTATTCTCCAGAGACCGT+CGG | 0.632910 | 1.4:-73505919 | MS.gene058167:CDS |
| ATGGAGGCTAGCATCATGGA+TGG | 0.640792 | 1.4:-73506454 | MS.gene058167:CDS |
| GTCCACCACCACACACCCGA+CGG | 0.644949 | 1.4:+73505903 | None:intergenic |
| CGACAGCAGAACCATTGGAA+CGG | 0.649930 | 1.4:+73508407 | None:intergenic |
| ATGTTTGATAACGAAGTCCA+CGG | 0.660912 | 1.4:+73505666 | None:intergenic |
| GCCGCTGCAACATCAACCGG+AGG | 0.665453 | 1.4:-73505865 | MS.gene058167:CDS |
| GGACTAATGAACAAAATGAG+TGG | 0.671746 | 1.4:-73505844 | MS.gene058167:CDS |
| TGGGGCAGAAGAATTTGCGA+GGG | 0.674968 | 1.4:-73506323 | MS.gene058167:CDS |
| TGTGTGGTGGTGGACAGTGA+AGG | 0.675693 | 1.4:-73505895 | MS.gene058167:CDS |
| TGGGCTATTGCTGTGCATGG+TGG | 0.681977 | 1.4:-73508520 | MS.gene058167:CDS |
| GATGGTACAAAGAGAAGATG+TGG | 0.684757 | 1.4:-73506436 | MS.gene058167:CDS |
| GAAGGGGAGGCTATCATACG+TGG | 0.685255 | 1.4:-73505748 | MS.gene058167:CDS |
| GCAGCAGTCATGGAATACAA+AGG | 0.690749 | 1.4:-73505706 | MS.gene058167:CDS |
| TGGTATGCTGAAACTTGCAA+AGG | 0.718250 | 1.4:-73506141 | MS.gene058167:CDS |
| TTCATACCTAGGCTTCTCTG+GGG | 0.724089 | 1.4:-73506341 | MS.gene058167:CDS |
| ACGTACGCATGTGAAGTGTG+TGG | 0.732488 | 1.4:-73505787 | MS.gene058167:CDS |
| CCACGCGCAGAATTGAACAG+AGG | 0.734037 | 1.4:+73506508 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTATAAAATTATTTCAATA+TGG | + | chr1.4:73505850-73505869 | None:intergenic | 10.0% |
| !!! | ATTATTTTTATCAATTTAGT+TGG | - | chr1.4:73506610-73506629 | MS.gene058167:intron | 10.0% |
| !!! | TGTTTAATATATTTCTTTTT+CGG | - | chr1.4:73506958-73506977 | MS.gene058167:intron | 10.0% |
| !! | AAGACAAATAAATATAACAT+AGG | - | chr1.4:73506766-73506785 | MS.gene058167:intron | 15.0% |
| !! | GTATAAATTATATCAACAAT+TGG | - | chr1.4:73507769-73507788 | MS.gene058167:intron | 15.0% |
| !!! | AACATGTATTTAATGATTTT+GGG | - | chr1.4:73507491-73507510 | MS.gene058167:intron | 15.0% |
| !!! | TAACATGTATTTAATGATTT+TGG | - | chr1.4:73507490-73507509 | MS.gene058167:intron | 15.0% |
| !!! | TAAGCAAAAAACATTTTTTT+AGG | - | chr1.4:73506183-73506202 | MS.gene058167:CDS | 15.0% |
| !!! | TTTTTGCTTACTATTTTTTA+AGG | - | chr1.4:73505961-73505980 | MS.gene058167:CDS | 15.0% |
| !! | AAAAACTAAGTAACATGAAT+AGG | + | chr1.4:73506410-73506429 | None:intergenic | 20.0% |
| !! | AAAACTAAGTAACATGAATA+GGG | + | chr1.4:73506409-73506428 | None:intergenic | 20.0% |
| !! | AACAAAAATCAATTTCTAAG+AGG | + | chr1.4:73506850-73506869 | None:intergenic | 20.0% |
| !! | ATAACTAGTACAAACAAAAA+CGG | + | chr1.4:73505938-73505957 | None:intergenic | 20.0% |
| !! | CAAAAAAATTTAGCAAAAGA+TGG | - | chr1.4:73506096-73506115 | MS.gene058167:intron | 20.0% |
| !! | CTTACTTATTGTCTTAATAT+TGG | - | chr1.4:73505618-73505637 | MS.gene058167:CDS | 20.0% |
| !! | CTTATGGATTTAATTGTAAT+GGG | - | chr1.4:73508472-73508491 | MS.gene058167:CDS | 20.0% |
| !! | TCATAGGCTAATTTAATATT+AGG | - | chr1.4:73507291-73507310 | MS.gene058167:intron | 20.0% |
| !! | TTATTGTGTAAGTTATGTTA+TGG | - | chr1.4:73506334-73506353 | MS.gene058167:CDS | 20.0% |
| !!! | AAACTCAGTATTACAATTTT+AGG | - | chr1.4:73506011-73506030 | MS.gene058167:intron | 20.0% |
| !!! | ACATGTATTTAATGATTTTG+GGG | - | chr1.4:73507492-73507511 | MS.gene058167:intron | 20.0% |
| !!! | ATACATGTTATTGTTATTCA+TGG | + | chr1.4:73507480-73507499 | None:intergenic | 20.0% |
| !!! | GAAATAATTTTATACATGCT+TGG | - | chr1.4:73505854-73505873 | MS.gene058167:CDS | 20.0% |
| !!! | GGTTTAGTACATTTTATATT+TGG | + | chr1.4:73506805-73506824 | None:intergenic | 20.0% |
| !!! | GTTTAAAAATTTGACTTCTT+AGG | - | chr1.4:73506698-73506717 | MS.gene058167:intron | 20.0% |
| !!! | TAGTTTTTCAACTCAATTTA+TGG | - | chr1.4:73506422-73506441 | MS.gene058167:CDS | 20.0% |
| !!! | TCTTAGAAATTGATTTTTGT+TGG | - | chr1.4:73506849-73506868 | MS.gene058167:intron | 20.0% |
| !!! | TTTTGATTAATGAATGTGTT+TGG | - | chr1.4:73508032-73508051 | MS.gene058167:intron | 20.0% |
| !!! | TTTTTGTTTATAAATGTGAC+CGG | - | chr1.4:73506282-73506301 | MS.gene058167:intron | 20.0% |
| !!! | TTTTTGTTTGTACTAGTTAT+AGG | - | chr1.4:73505938-73505957 | MS.gene058167:CDS | 20.0% |
| ! | AATTTATGGATGAGTTACTT+GGG | - | chr1.4:73506436-73506455 | MS.gene058167:CDS | 25.0% |
| ! | ACAATAAGTAAGAAGTTGTT+TGG | + | chr1.4:73505610-73505629 | None:intergenic | 25.0% |
| ! | GCTTATGGATTTAATTGTAA+TGG | - | chr1.4:73508471-73508490 | MS.gene058167:CDS | 25.0% |
| ! | TGTATAAATGCATACTTCTT+TGG | - | chr1.4:73507793-73507812 | MS.gene058167:intron | 25.0% |
| ! | TTTCTTGATATGTCATTCAT+AGG | - | chr1.4:73507275-73507294 | MS.gene058167:intron | 25.0% |
| !! | AATTACTTGTTACACATTCA+AGG | + | chr1.4:73507841-73507860 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATAAATGTGAC+CGG | + | chr1.4:73506173-73506192 | None:intergenic | 25.0% |
| !!! | AACAAGTAATTGTTTTTGCT+AGG | - | chr1.4:73507850-73507869 | MS.gene058167:intron | 25.0% |
| !!! | ACAAGTAATTGTTTTTGCTA+GGG | - | chr1.4:73507851-73507870 | MS.gene058167:intron | 25.0% |
| !!! | TTATCGAGTTTACTTTTAAG+AGG | + | chr1.4:73506984-73507003 | None:intergenic | 25.0% |
| AATCCACAGTTTAATTACTG+CGG | + | chr1.4:73508006-73508025 | None:intergenic | 30.0% | |
| AATTTATGATATACTCCCTC+CGG | + | chr1.4:73506304-73506323 | None:intergenic | 30.0% | |
| ACTAAACCGCTTATATGTTT+AGG | - | chr1.4:73506817-73506836 | MS.gene058167:intron | 30.0% | |
| CAATTTATGGATGAGTTACT+TGG | - | chr1.4:73506435-73506454 | MS.gene058167:CDS | 30.0% | |
| CATTGAATGACTAATGTATC+CGG | + | chr1.4:73506247-73506266 | None:intergenic | 30.0% | |
| TGATTAATGAATGTGTTTGG+TGG | - | chr1.4:73508035-73508054 | MS.gene058167:intron | 30.0% | |
| ! | AATTGTAATGGGATGTTTAG+AGG | - | chr1.4:73508483-73508502 | MS.gene058167:CDS | 30.0% |
| ! | CGTGAAGGTTTAATGTTTTT+CGG | + | chr1.4:73505915-73505934 | None:intergenic | 30.0% |
| !! | ACAAAAGCGCTTAAACATAA+CGG | + | chr1.4:73506885-73506904 | None:intergenic | 30.0% |
| !! | ATCACGATACAAGTTTGTTA+AGG | + | chr1.4:73505723-73505742 | None:intergenic | 30.0% |
| !! | GAAATTGATTTTTGTTGGCT+TGG | - | chr1.4:73506854-73506873 | MS.gene058167:intron | 30.0% |
| AAAGGAAGCAAACACAATTC+TGG | - | chr1.4:73507937-73507956 | MS.gene058167:intron | 35.0% | |
| AACAAAATGAGTGGTCGAAT+TGG | - | chr1.4:73508225-73508244 | MS.gene058167:intron | 35.0% | |
| AAGAGTCCACTACAAATGAA+TGG | - | chr1.4:73508105-73508124 | MS.gene058167:intron | 35.0% | |
| AGAGTCCACTACAAATGAAT+GGG | - | chr1.4:73508106-73508125 | MS.gene058167:intron | 35.0% | |
| ATCTGACCTATAAATGTGAC+CGG | - | chr1.4:73506225-73506244 | MS.gene058167:intron | 35.0% | |
| ATGTATCCGGTCACATTTAT+AGG | + | chr1.4:73506234-73506253 | None:intergenic | 35.0% | |
| CCAGTATCTGAATTCTACAT+AGG | - | chr1.4:73507341-73507360 | MS.gene058167:intron | 35.0% | |
| CCTATGTAGAATTCAGATAC+TGG | + | chr1.4:73507344-73507363 | None:intergenic | 35.0% | |
| GGACTAATGAACAAAATGAG+TGG | - | chr1.4:73508216-73508235 | MS.gene058167:intron | 35.0% | |
| GTTGTCAAACTCAATGTTCT+AGG | + | chr1.4:73507380-73507399 | None:intergenic | 35.0% | |
| TACACATTCAAGGACCAAAA+TGG | + | chr1.4:73507831-73507850 | None:intergenic | 35.0% | |
| TGTTTATAAATGTGACCGGA+GGG | - | chr1.4:73506286-73506305 | MS.gene058167:intron | 35.0% | |
| TTACCGCAGTAATTAAACTG+TGG | - | chr1.4:73508000-73508019 | MS.gene058167:intron | 35.0% | |
| TTCAGCATACCAACATTATC+AGG | + | chr1.4:73507911-73507930 | None:intergenic | 35.0% | |
| TTCATATGTTATACTCCCTC+CGG | - | chr1.4:73506151-73506170 | MS.gene058167:CDS | 35.0% | |
| TTGTTTATAAATGTGACCGG+AGG | - | chr1.4:73506285-73506304 | MS.gene058167:intron | 35.0% | |
| TTTGTTAAGGTGAGAGAGAT+TGG | + | chr1.4:73505710-73505729 | None:intergenic | 35.0% | |
| ! | AAGTGAGACAGGATTTTTCA+CGG | + | chr1.4:73507670-73507689 | None:intergenic | 35.0% |
| ! | CATTTTGTTCATTAGTCCTC+CGG | + | chr1.4:73508214-73508233 | None:intergenic | 35.0% |
| ! | GTCATGGAATACAAAGGTTT+TGG | - | chr1.4:73508360-73508379 | MS.gene058167:intron | 35.0% |
| ! | TATGGTAAGATGTTTTGCAG+TGG | - | chr1.4:73506352-73506371 | MS.gene058167:CDS | 35.0% |
| ! | TTCATCACTCCTGATAATGT+TGG | - | chr1.4:73507899-73507918 | MS.gene058167:intron | 35.0% |
| !! | ATCAAACATCGACTTGATGA+AGG | - | chr1.4:73508408-73508427 | MS.gene058167:CDS | 35.0% |
| !! | ATGTTTGATAACGAAGTCCA+CGG | + | chr1.4:73508397-73508416 | None:intergenic | 35.0% |
| !! | TCAAACATCGACTTGATGAA+GGG | - | chr1.4:73508409-73508428 | MS.gene058167:CDS | 35.0% |
| !!! | CTCTTTTCTTTTTCAGCTGT+TGG | + | chr1.4:73508090-73508109 | None:intergenic | 35.0% |
| !!! | TAATTGTTTTTGCTAGGGTG+TGG | - | chr1.4:73507856-73507875 | MS.gene058167:intron | 35.0% |
| !!! | TTTTTAAGGTCGTCAAACTC+TGG | - | chr1.4:73505975-73505994 | MS.gene058167:CDS | 35.0% |
| AGAAGCCTAGGTATGAATGA+GGG | + | chr1.4:73507716-73507735 | None:intergenic | 40.0% | |
| ATTCATACCTAGGCTTCTCT+GGG | - | chr1.4:73507718-73507737 | MS.gene058167:intron | 40.0% | |
| CCATTGACATCCCTTGATTA+CGG | + | chr1.4:73506477-73506496 | None:intergenic | 40.0% | |
| CGTAATCAAGGGATGTCAAT+GGG | - | chr1.4:73506475-73506494 | MS.gene058167:CDS | 40.0% | |
| CTTATTGCTGTGTCTAGCAA+GGG | - | chr1.4:73508441-73508460 | MS.gene058167:CDS | 40.0% | |
| GAGGATGAGGAACAATTTGA+TGG | + | chr1.4:73506530-73506549 | None:intergenic | 40.0% | |
| GATGGTACAAAGAGAAGATG+TGG | - | chr1.4:73507624-73507643 | MS.gene058167:intron | 40.0% | |
| GGCTCAAGGATGTGAAAATA+TGG | - | chr1.4:73508523-73508542 | MS.gene058167:CDS | 40.0% | |
| GTAATCAAGGGATGTCAATG+GGG | - | chr1.4:73506476-73506495 | MS.gene058167:CDS | 40.0% | |
| GTCGCACCTAAACATATAAG+CGG | + | chr1.4:73506826-73506845 | None:intergenic | 40.0% | |
| TACAAACAAAAACGGCGTGA+AGG | + | chr1.4:73505930-73505949 | None:intergenic | 40.0% | |
| TCTTATTGCTGTGTCTAGCA+AGG | - | chr1.4:73508440-73508459 | MS.gene058167:CDS | 40.0% | |
| TGCTTATAAATGTGACCGGA+GGG | + | chr1.4:73506169-73506188 | None:intergenic | 40.0% | |
| TGGTATGCTGAAACTTGCAA+AGG | - | chr1.4:73507919-73507938 | MS.gene058167:intron | 40.0% | |
| TTGCTTATAAATGTGACCGG+AGG | + | chr1.4:73506170-73506189 | None:intergenic | 40.0% | |
| ! | ATTGGTGACTCACCTATCAT+AGG | - | chr1.4:73508243-73508262 | MS.gene058167:intron | 40.0% |
| ! | TTTTTGACAGGTGAGAGAAC+TGG | - | chr1.4:73507521-73507540 | MS.gene058167:intron | 40.0% |
| !! | TTTGAAAGCGCCGTAATCAA+GGG | - | chr1.4:73506464-73506483 | MS.gene058167:CDS | 40.0% |
| !!! | TTGGGGTCTCTTTTTTTGAC+AGG | - | chr1.4:73507509-73507528 | MS.gene058167:intron | 40.0% |
| AAAAGGAACAGCCGAAATGG+AGG | - | chr1.4:73507590-73507609 | MS.gene058167:intron | 45.0% | |
| AAGTCCCCTCATTCATACCT+AGG | - | chr1.4:73507708-73507727 | MS.gene058167:intron | 45.0% | |
| AGAAGAATTTGCGAGGGAAC+AGG | - | chr1.4:73507743-73507762 | MS.gene058167:intron | 45.0% | |
| AGCAAAAGGAACAGCCGAAA+TGG | - | chr1.4:73507587-73507606 | MS.gene058167:intron | 45.0% | |
| ATATCTGCTCTCCGTTCCAA+TGG | - | chr1.4:73505642-73505661 | MS.gene058167:CDS | 45.0% | |
| CATTCAAGGACCAAAATGGC+TGG | + | chr1.4:73507827-73507846 | None:intergenic | 45.0% | |
| CATTCATACCTAGGCTTCTC+TGG | - | chr1.4:73507717-73507736 | MS.gene058167:intron | 45.0% | |
| CCGTAATCAAGGGATGTCAA+TGG | - | chr1.4:73506474-73506493 | MS.gene058167:CDS | 45.0% | |
| GAAGCCTAGGTATGAATGAG+GGG | + | chr1.4:73507715-73507734 | None:intergenic | 45.0% | |
| GAGAAGCCTAGGTATGAATG+AGG | + | chr1.4:73507717-73507736 | None:intergenic | 45.0% | |
| GCAGCAGTCATGGAATACAA+AGG | - | chr1.4:73508354-73508373 | MS.gene058167:intron | 45.0% | |
| GGATCTGCTTTGACAGCAAA+AGG | - | chr1.4:73507573-73507592 | MS.gene058167:intron | 45.0% | |
| TCTGGAGAATAAGCGCTTAG+TGG | + | chr1.4:73508135-73508154 | None:intergenic | 45.0% | |
| TTCATACCTAGGCTTCTCTG+GGG | - | chr1.4:73507719-73507738 | MS.gene058167:intron | 45.0% | |
| TTCATGTTGAAGAAGCTCCG+CGG | + | chr1.4:73506570-73506589 | None:intergenic | 45.0% | |
| TTGCTAGGGTGTGGATATTG+AGG | - | chr1.4:73507865-73507884 | MS.gene058167:intron | 45.0% | |
| ! | CATGATGCTAGCCTCCATTT+CGG | + | chr1.4:73507604-73507623 | None:intergenic | 45.0% |
| ! | GAAGTTGTTTGGCTTCTTCC+TGG | + | chr1.4:73505599-73505618 | None:intergenic | 45.0% |
| ! | TGAGACAGGATTTTTCACGG+TGG | + | chr1.4:73507667-73507686 | None:intergenic | 45.0% |
| !! | AGAAGATGTGGTGCTGTTTC+TGG | - | chr1.4:73507636-73507655 | MS.gene058167:intron | 45.0% |
| !! | AGAGGTGTTGCTACTGAGAA+TGG | - | chr1.4:73508501-73508520 | MS.gene058167:CDS | 45.0% |
| !! | CAAAGGTTTTGGCCTTCAAG+AGG | - | chr1.4:73508371-73508390 | MS.gene058167:intron | 45.0% |
| !! | GAGGTGTTGCTACTGAGAAT+GGG | - | chr1.4:73508502-73508521 | MS.gene058167:CDS | 45.0% |
| !! | GTTTGAAAGCGCCGTAATCA+AGG | - | chr1.4:73506463-73506482 | MS.gene058167:CDS | 45.0% |
| !! | AATGTTAAATTATTATTTAA+TGG | - | chr1.4:73507244-73507263 | MS.gene058167:intron | 5.0% |
| ACGTACGCATGTGAAGTGTG+TGG | - | chr1.4:73508273-73508292 | MS.gene058167:intron | 50.0% | |
| AGCAAGGGTGAAGTGGCTTA+TGG | - | chr1.4:73508456-73508475 | MS.gene058167:CDS | 50.0% | |
| ATCAAGGGATGTCAATGGGG+TGG | - | chr1.4:73506479-73506498 | MS.gene058167:CDS | 50.0% | |
| ATGGAGGCTAGCATCATGGA+TGG | - | chr1.4:73507606-73507625 | MS.gene058167:intron | 50.0% | |
| CGAAATGGAGGCTAGCATCA+TGG | - | chr1.4:73507602-73507621 | MS.gene058167:intron | 50.0% | |
| CGACAGCAGAACCATTGGAA+CGG | + | chr1.4:73505656-73505675 | None:intergenic | 50.0% | |
| CGACTTGATGAAGGGTTTGC+TGG | - | chr1.4:73508417-73508436 | MS.gene058167:CDS | 50.0% | |
| CTTATTCTCCAGAGACCGTC+GGG | - | chr1.4:73508142-73508161 | MS.gene058167:intron | 50.0% | |
| GACATCGACAGCAGAACCAT+TGG | + | chr1.4:73505661-73505680 | None:intergenic | 50.0% | |
| GCTTATTCTCCAGAGACCGT+CGG | - | chr1.4:73508141-73508160 | MS.gene058167:intron | 50.0% | |
| GGCAGCCCATTCATTTGTAG+TGG | + | chr1.4:73508114-73508133 | None:intergenic | 50.0% | |
| TACGTTCCAGCGCCTATGAT+AGG | + | chr1.4:73508258-73508277 | None:intergenic | 50.0% | |
| TCAAGGGATGTCAATGGGGT+GGG | - | chr1.4:73506480-73506499 | MS.gene058167:CDS | 50.0% | |
| TCATGTTGAAGAAGCTCCGC+GGG | + | chr1.4:73506569-73506588 | None:intergenic | 50.0% | |
| TGGGGCAGAAGAATTTGCGA+GGG | - | chr1.4:73507737-73507756 | MS.gene058167:intron | 50.0% | |
| TGTGTCTAGCAAGGGTGAAG+TGG | - | chr1.4:73508449-73508468 | MS.gene058167:CDS | 50.0% | |
| ! | AGTCTCTTGCACTGGTGAAG+GGG | - | chr1.4:73508296-73508315 | MS.gene058167:intron | 50.0% |
| ! | GAGGGGACTTTTCCATGACA+AGG | + | chr1.4:73507698-73507717 | None:intergenic | 50.0% |
| ! | GAGTCTCTTGCACTGGTGAA+GGG | - | chr1.4:73508295-73508314 | MS.gene058167:intron | 50.0% |
| ! | GGAGTAGTAGCCAGCCATTT+TGG | - | chr1.4:73507814-73507833 | MS.gene058167:intron | 50.0% |
| ! | TGCTACTGAGAATGGGCTCA+AGG | - | chr1.4:73508509-73508528 | MS.gene058167:CDS | 50.0% |
| ACAAGGCGAGCAAGTGAGAC+AGG | + | chr1.4:73507681-73507700 | None:intergenic | 55.0% | |
| CAAGGGATGTCAATGGGGTG+GGG | - | chr1.4:73506481-73506500 | MS.gene058167:CDS | 55.0% | |
| CATCGGAATCTGCGAGGATG+AGG | + | chr1.4:73506543-73506562 | None:intergenic | 55.0% | |
| CATGTTGAAGAAGCTCCGCG+GGG | + | chr1.4:73506568-73506587 | None:intergenic | 55.0% | |
| CCACGCGCAGAATTGAACAG+AGG | + | chr1.4:73507555-73507574 | None:intergenic | 55.0% | |
| CCTCTGTTCAATTCTGCGCG+TGG | - | chr1.4:73507552-73507571 | MS.gene058167:intron | 55.0% | |
| CTCACTTGCTCGCCTTGTCA+TGG | - | chr1.4:73507683-73507702 | MS.gene058167:intron | 55.0% | |
| CTGGGGCAGAAGAATTTGCG+AGG | - | chr1.4:73507736-73507755 | MS.gene058167:intron | 55.0% | |
| CTTCTTCCTGGCGTTGTGGT+GGG | + | chr1.4:73505587-73505606 | None:intergenic | 55.0% | |
| GAAGGGGAGGCTATCATACG+TGG | - | chr1.4:73508312-73508331 | MS.gene058167:intron | 55.0% | |
| GACTCACCTATCATAGGCGC+TGG | - | chr1.4:73508249-73508268 | MS.gene058167:intron | 55.0% | |
| GGTTGGGCTATTGCTGTGCA+TGG | - | chr1.4:73505537-73505556 | MS.gene058167:CDS | 55.0% | |
| GTGTGTGGAGTCTCTTGCAC+TGG | - | chr1.4:73508288-73508307 | MS.gene058167:intron | 55.0% | |
| TAATCTCCCACCACAACGCC+AGG | - | chr1.4:73505578-73505597 | MS.gene058167:CDS | 55.0% | |
| TGGGCTATTGCTGTGCATGG+TGG | - | chr1.4:73505540-73505559 | MS.gene058167:CDS | 55.0% | |
| TTGGCTTCTTCCTGGCGTTG+TGG | + | chr1.4:73505591-73505610 | None:intergenic | 55.0% | |
| ! | GGAGTCTCTTGCACTGGTGA+AGG | - | chr1.4:73508294-73508313 | MS.gene058167:intron | 55.0% |
| ! | TCCTCCGGTTGATGTTGCAG+CGG | + | chr1.4:73508199-73508218 | None:intergenic | 55.0% |
| ! | TGGCGTTGTGGTGGGAGATT+AGG | + | chr1.4:73505579-73505598 | None:intergenic | 55.0% |
| ! | TGTGCCGCTGCAACATCAAC+CGG | - | chr1.4:73508192-73508211 | MS.gene058167:intron | 55.0% |
| !! | TGGTGGTGGACAGTGAAGGA+AGG | - | chr1.4:73508169-73508188 | MS.gene058167:intron | 55.0% |
| !! | TGTGTGGTGGTGGACAGTGA+AGG | - | chr1.4:73508165-73508184 | MS.gene058167:intron | 55.0% |
| !! | TTTTGGCCTTCAAGAGGCCG+TGG | - | chr1.4:73508377-73508396 | MS.gene058167:intron | 55.0% |
| AGAAGCTCCGCGGGGATCAT+CGG | + | chr1.4:73506560-73506579 | None:intergenic | 60.0% | |
| CGAAGTCCACGGCCTCTTGA+AGG | + | chr1.4:73508386-73508405 | None:intergenic | 60.0% | |
| CTTCTGCCCCAGAGAAGCCT+AGG | + | chr1.4:73507728-73507747 | None:intergenic | 60.0% | |
| GATGTCAATGGGGTGGGGTG+GGG | - | chr1.4:73506486-73506505 | MS.gene058167:CDS | 60.0% | |
| GCAGATTCCGATGATCCCCG+CGG | - | chr1.4:73506550-73506569 | MS.gene058167:intron | 60.0% | |
| GCTTCTTCCTGGCGTTGTGG+TGG | + | chr1.4:73505588-73505607 | None:intergenic | 60.0% | |
| GGATGTCAATGGGGTGGGGT+GGG | - | chr1.4:73506485-73506504 | MS.gene058167:CDS | 60.0% | |
| GGGGATCATCGGAATCTGCG+AGG | + | chr1.4:73506549-73506568 | None:intergenic | 60.0% | |
| ! | ATTGCTGTGCATGGTGGCGC+AGG | - | chr1.4:73505546-73505565 | MS.gene058167:CDS | 60.0% |
| ! | CTCTTGCACTGGTGAAGGGG+AGG | - | chr1.4:73508299-73508318 | MS.gene058167:intron | 60.0% |
| AATGGGGTGGGGTGGGGATG+AGG | - | chr1.4:73506492-73506511 | MS.gene058167:CDS | 65.0% | |
| ACCACACACCCGACGGTCTC+TGG | + | chr1.4:73508153-73508172 | None:intergenic | 65.0% | |
| ACGTGGCACTCTTGCGCGTG+AGG | - | chr1.4:73508329-73508348 | MS.gene058167:intron | 65.0% | |
| AGAGACCGTCGGGTGTGTGG+TGG | - | chr1.4:73508152-73508171 | MS.gene058167:intron | 65.0% | |
| GCCGCTGCAACATCAACCGG+AGG | - | chr1.4:73508195-73508214 | MS.gene058167:intron | 65.0% | |
| GCGTGAGGTGGCAGCAGTCA+TGG | - | chr1.4:73508344-73508363 | MS.gene058167:intron | 65.0% | |
| GGGATGTCAATGGGGTGGGG+TGG | - | chr1.4:73506484-73506503 | MS.gene058167:CDS | 65.0% | |
| GTCCACCACCACACACCCGA+CGG | + | chr1.4:73508160-73508179 | None:intergenic | 65.0% | |
| TCCAGAGACCGTCGGGTGTG+TGG | - | chr1.4:73508149-73508168 | MS.gene058167:intron | 65.0% | |
| TGGCACTCTTGCGCGTGAGG+TGG | - | chr1.4:73508332-73508351 | MS.gene058167:intron | 65.0% | |
| ! | TGTGCATGGTGGCGCAGGTG+TGG | - | chr1.4:73505551-73505570 | MS.gene058167:CDS | 65.0% |
| GACCGTCGGGTGTGTGGTGG+TGG | - | chr1.4:73508155-73508174 | MS.gene058167:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 73505531 | 73508551 | 73505531 | ID=MS.gene058167 |
| chr1.4 | mRNA | 73505531 | 73508551 | 73505531 | ID=MS.gene058167.t1;Parent=MS.gene058167 |
| chr1.4 | exon | 73508390 | 73508551 | 73508390 | ID=MS.gene058167.t1.exon1;Parent=MS.gene058167.t1 |
| chr1.4 | CDS | 73508390 | 73508551 | 73508390 | ID=cds.MS.gene058167.t1;Parent=MS.gene058167.t1 |
| chr1.4 | exon | 73506318 | 73506551 | 73506318 | ID=MS.gene058167.t1.exon2;Parent=MS.gene058167.t1 |
| chr1.4 | CDS | 73506318 | 73506551 | 73506318 | ID=cds.MS.gene058167.t1;Parent=MS.gene058167.t1 |
| chr1.4 | exon | 73506124 | 73506210 | 73506124 | ID=MS.gene058167.t1.exon3;Parent=MS.gene058167.t1 |
| chr1.4 | CDS | 73506124 | 73506210 | 73506124 | ID=cds.MS.gene058167.t1;Parent=MS.gene058167.t1 |
| chr1.4 | exon | 73505531 | 73506010 | 73505531 | ID=MS.gene058167.t1.exon4;Parent=MS.gene058167.t1 |
| chr1.4 | CDS | 73505531 | 73506010 | 73505531 | ID=cds.MS.gene058167.t1;Parent=MS.gene058167.t1 |
| Gene Sequence |
| Protein sequence |
