Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060213.t1 | XP_003596322.1 | 96.3 | 460 | 17 | 0 | 10 | 469 | 1 | 460 | 5.50E-247 | 863.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060213.t1 | F4KGE8 | 27.6 | 416 | 251 | 9 | 82 | 465 | 161 | 558 | 2.5e-38 | 161.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060213.t1 | G7ITF5 | 96.3 | 460 | 17 | 0 | 10 | 469 | 1 | 460 | 4.0e-247 | 863.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene058720 | MS.gene060213 | 0.826525 | 2.59E-54 | -1.69E-46 |
MS.gene060213 | MS.gene070339 | 0.817418 | 3.33E-52 | -1.69E-46 |
MS.gene060213 | MS.gene72170 | 0.813825 | 2.10E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene060213 | MS.gene059205 | PPI |
MS.gene060213 | MS.gene27831 | PPI |
MS.gene060213 | MS.gene058492 | PPI |
MS.gene060213 | MS.gene48940 | PPI |
MS.gene060213 | MS.gene45832 | PPI |
MS.gene060213 | MS.gene48223 | PPI |
MS.gene060213 | MS.gene023604 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060213.t1 | MTR_2g075910 | 98.696 | 460 | 6 | 0 | 10 | 469 | 1 | 460 | 0.0 | 941 |
MS.gene060213.t1 | MTR_8g059485 | 59.870 | 461 | 156 | 10 | 10 | 464 | 1 | 438 | 2.39e-180 | 512 |
MS.gene060213.t1 | MTR_8g059485 | 59.870 | 461 | 156 | 10 | 10 | 464 | 10 | 447 | 9.85e-180 | 511 |
MS.gene060213.t1 | MTR_8g087400 | 45.572 | 463 | 237 | 7 | 10 | 462 | 1 | 458 | 6.98e-128 | 379 |
MS.gene060213.t1 | MTR_4g025420 | 41.538 | 390 | 210 | 5 | 80 | 462 | 34 | 412 | 4.38e-99 | 304 |
MS.gene060213.t1 | MTR_0178s0030 | 31.990 | 397 | 245 | 5 | 78 | 462 | 139 | 522 | 6.77e-59 | 202 |
MS.gene060213.t1 | MTR_5g075180 | 31.990 | 397 | 232 | 8 | 73 | 464 | 78 | 441 | 5.23e-51 | 179 |
MS.gene060213.t1 | MTR_3g462150 | 30.446 | 404 | 248 | 10 | 82 | 466 | 92 | 481 | 5.96e-50 | 177 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060213.t1 | AT1G53380 | 52.288 | 459 | 204 | 7 | 10 | 462 | 1 | 450 | 5.73e-168 | 481 |
MS.gene060213.t1 | AT1G53380 | 52.288 | 459 | 204 | 7 | 10 | 462 | 1 | 450 | 5.73e-168 | 481 |
MS.gene060213.t1 | AT1G53380 | 52.288 | 459 | 204 | 7 | 10 | 462 | 1 | 450 | 5.73e-168 | 481 |
MS.gene060213.t1 | AT1G53380 | 52.288 | 459 | 204 | 7 | 10 | 462 | 1 | 450 | 5.73e-168 | 481 |
MS.gene060213.t1 | AT1G53380 | 52.288 | 459 | 204 | 7 | 10 | 462 | 1 | 450 | 5.73e-168 | 481 |
MS.gene060213.t1 | AT3G14870 | 50.318 | 471 | 216 | 5 | 10 | 467 | 2 | 467 | 5.98e-165 | 474 |
MS.gene060213.t1 | AT3G14870 | 50.212 | 472 | 217 | 5 | 9 | 467 | 4 | 470 | 6.21e-165 | 474 |
MS.gene060213.t1 | AT3G14870 | 50.318 | 471 | 216 | 5 | 10 | 467 | 1 | 466 | 8.19e-165 | 473 |
MS.gene060213.t1 | AT3G14870 | 50.318 | 471 | 216 | 5 | 10 | 467 | 1 | 466 | 8.19e-165 | 473 |
MS.gene060213.t1 | AT3G14870 | 50.318 | 471 | 216 | 5 | 10 | 467 | 1 | 466 | 8.19e-165 | 473 |
MS.gene060213.t1 | AT1G29300 | 41.841 | 478 | 234 | 9 | 10 | 466 | 1 | 455 | 5.49e-111 | 336 |
MS.gene060213.t1 | AT2G45260 | 39.667 | 421 | 238 | 4 | 52 | 462 | 4 | 418 | 3.09e-102 | 312 |
MS.gene060213.t1 | AT3G60680 | 32.727 | 385 | 243 | 4 | 83 | 462 | 120 | 493 | 1.32e-60 | 206 |
MS.gene060213.t1 | AT4G34080 | 37.143 | 280 | 169 | 2 | 71 | 343 | 2 | 281 | 9.52e-56 | 187 |
MS.gene060213.t1 | AT2G30380 | 32.540 | 378 | 212 | 4 | 85 | 462 | 76 | 410 | 1.70e-53 | 185 |
MS.gene060213.t1 | AT4G33320 | 35.315 | 286 | 177 | 3 | 71 | 348 | 2 | 287 | 1.22e-49 | 171 |
MS.gene060213.t1 | AT5G58960 | 28.606 | 416 | 247 | 9 | 82 | 465 | 86 | 483 | 7.03e-47 | 169 |
MS.gene060213.t1 | AT5G58960 | 28.606 | 416 | 247 | 9 | 82 | 465 | 86 | 483 | 7.03e-47 | 169 |
MS.gene060213.t1 | AT5G58960 | 28.606 | 416 | 247 | 9 | 82 | 465 | 161 | 558 | 2.84e-46 | 169 |
MS.gene060213.t1 | AT2G32130 | 44.355 | 124 | 69 | 0 | 82 | 205 | 34 | 157 | 1.35e-26 | 105 |
MS.gene060213.t1 | AT4G36100 | 46.078 | 102 | 52 | 1 | 71 | 169 | 2 | 103 | 1.28e-20 | 91.3 |
Find 49 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATAATGTTGTTCACTTATC+AGG | 0.152485 | 2.3:-20982477 | MS.gene060213:CDS |
TCATTTGGAAGATTGAAATT+AGG | 0.213794 | 2.3:+20982237 | None:intergenic |
GCTAGCATTTCAACCGTTAA+AGG | 0.254354 | 2.3:-20982843 | MS.gene060213:CDS |
TTACTGTTGTTCCTGGCTTT+AGG | 0.255240 | 2.3:-20981783 | MS.gene060213:CDS |
TCCATGTTTGTTTCATCCTT+TGG | 0.256313 | 2.3:+20982969 | None:intergenic |
CATTTGGAAGATTGAAATTA+GGG | 0.340570 | 2.3:+20982238 | None:intergenic |
ATGAAATGAGATCTGCAAAA+TGG | 0.347278 | 2.3:-20982377 | MS.gene060213:CDS |
TTCAGCATATGCACCTTTAA+CGG | 0.355170 | 2.3:+20982830 | None:intergenic |
AGCTGAATCGAAGGAGATAA+AGG | 0.360621 | 2.3:-20982661 | MS.gene060213:CDS |
TTCCTAGCTAATTTCTTGCT+TGG | 0.369258 | 2.3:+20983053 | None:intergenic |
AATTGCGCAAACGACGATCT+TGG | 0.395372 | 2.3:+20982117 | None:intergenic |
TCATCAGGAAGTGCCTCATT+TGG | 0.398030 | 2.3:+20982222 | None:intergenic |
GACGAAGGACAGTAGCAAAA+TGG | 0.407867 | 2.3:+20982442 | None:intergenic |
GTTTCTTAAAGAGAAGTTAG+TGG | 0.416336 | 2.3:-20982565 | MS.gene060213:CDS |
TCAGAAGCTTCAATTCCATC+AGG | 0.419938 | 2.3:+20982780 | None:intergenic |
GTTGTTCCTGGCTTTAGGAT+TGG | 0.422713 | 2.3:-20981778 | MS.gene060213:CDS |
CGTCGTTTGCGCAATTCTGC+AGG | 0.425402 | 2.3:-20982110 | MS.gene060213:CDS |
TTGCTTGGTGTCACTGCTGA+AGG | 0.427239 | 2.3:+20983068 | None:intergenic |
TCAGAAGAAGAACCAGTTGT+TGG | 0.431414 | 2.3:-20981808 | MS.gene060213:CDS |
GAAACTCTCCACCACTCAAA+AGG | 0.448344 | 2.3:+20982019 | None:intergenic |
CGAGGTTACCGCGAAGAAGT+TGG | 0.455237 | 2.3:-20982622 | MS.gene060213:CDS |
TGCTCTTAGATGAAGAACTT+TGG | 0.458200 | 2.3:+20983025 | None:intergenic |
CGCGAAGAAGTTGGAATCAC+AGG | 0.476006 | 2.3:-20982613 | MS.gene060213:CDS |
AGCTTGAACCTCAAAAGAAA+AGG | 0.479323 | 2.3:+20981930 | None:intergenic |
CTGTGATTCCAACTTCTTCG+CGG | 0.496048 | 2.3:+20982614 | None:intergenic |
TCAATTCCATCAGGGTCAAA+AGG | 0.497708 | 2.3:+20982789 | None:intergenic |
ATAATGTTGTTCACTTATCA+GGG | 0.499714 | 2.3:-20982476 | MS.gene060213:CDS |
TAATTTCAATCTTCCAAATG+AGG | 0.502545 | 2.3:-20982235 | MS.gene060213:CDS |
GCTGCAAGTATCGCTTTCTC+TGG | 0.503251 | 2.3:+20982681 | None:intergenic |
ACAACAGTAAAACCAACAAC+TGG | 0.508318 | 2.3:+20981796 | None:intergenic |
TGCTACTGTCCTTCGTCACG+CGG | 0.517199 | 2.3:-20982436 | MS.gene060213:CDS |
TGAAATGAGATCTGCAAAAT+GGG | 0.517744 | 2.3:-20982376 | MS.gene060213:CDS |
GCTGAATCGAAGGAGATAAA+GGG | 0.526870 | 2.3:-20982660 | MS.gene060213:CDS |
TCGATCTAACCGCGTGACGA+AGG | 0.536856 | 2.3:+20982427 | None:intergenic |
CTTCTTCGCGGTAACCTCGT+AGG | 0.541450 | 2.3:+20982626 | None:intergenic |
GAGAAGAGATTGAATCAAAG+TGG | 0.546796 | 2.3:-20982516 | MS.gene060213:CDS |
TGGAAAAGACTACAATAACT+TGG | 0.552801 | 2.3:-20982950 | MS.gene060213:CDS |
TGATTTGATTCTTCTGCATG+AGG | 0.556670 | 2.3:+20981728 | None:intergenic |
CATGCAGAAGAATCAAATCA+AGG | 0.561559 | 2.3:-20981725 | None:intergenic |
TCCAAAGGATGAAACAAACA+TGG | 0.604906 | 2.3:-20982970 | MS.gene060213:CDS |
GATACTTGCAGCTGAATCGA+AGG | 0.610878 | 2.3:-20982670 | MS.gene060213:CDS |
CAGAAGCTTCAATTCCATCA+GGG | 0.612641 | 2.3:+20982781 | None:intergenic |
TATATCTGATACAAATCCAA+AGG | 0.615715 | 2.3:-20982985 | MS.gene060213:CDS |
GATCGATTCGAAACTTTGTG+AGG | 0.630009 | 2.3:-20982410 | MS.gene060213:CDS |
AGTATCGCTTTCTCTGGTGA+AGG | 0.630806 | 2.3:+20982687 | None:intergenic |
CACCAAGCAAGAAATTAGCT+AGG | 0.637970 | 2.3:-20983055 | MS.gene060213:CDS |
AGGACAGTAGCAAAATGGCT+AGG | 0.648797 | 2.3:+20982447 | None:intergenic |
TGATGCTATTGAACACAATG+TGG | 0.709156 | 2.3:-20982337 | MS.gene060213:CDS |
GGGCGTCATTAAAACCTACG+AGG | 0.782632 | 2.3:-20982640 | MS.gene060213:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAGAAAAAATCAACAAAAT+TGG | - | chr2.3:20983741-20983760 | MS.gene060213:intron | 15.0% |
!! | ATATATAATTACTTGATTGA+TGG | - | chr2.3:20981983-20982002 | MS.gene060213:CDS | 15.0% |
!! | TATATAATTACTTGATTGAT+GGG | - | chr2.3:20981984-20982003 | MS.gene060213:CDS | 15.0% |
!! | TTCATCTATCTAAAAAAAAA+AGG | + | chr2.3:20982599-20982618 | None:intergenic | 15.0% |
!!! | TTTTATTCTGGTATAAAATA+AGG | - | chr2.3:20982153-20982172 | MS.gene060213:CDS | 15.0% |
!!! | CATAATGAAAGTATATAGAA+TGG | - | chr2.3:20982071-20982090 | MS.gene060213:CDS | 20.0% |
!!! | TAATGACAATATCTTTTACT+AGG | + | chr2.3:20982763-20982782 | None:intergenic | 20.0% |
!!! | TCATTCTATACTTTTTTAGA+TGG | - | chr2.3:20982839-20982858 | MS.gene060213:CDS | 20.0% |
!!! | TTGTGCATTATTTTTTATTC+TGG | - | chr2.3:20982141-20982160 | MS.gene060213:CDS | 20.0% |
! | AAAGGAATAATCAATCATGT+TGG | - | chr2.3:20981870-20981889 | MS.gene060213:CDS | 25.0% |
! | AAATAATGCACAACTTTGAA+TGG | + | chr2.3:20982134-20982153 | None:intergenic | 25.0% |
! | AGCAAAGGAATAAAAATTGA+AGG | + | chr2.3:20982332-20982351 | None:intergenic | 25.0% |
! | ATAATGTTGTTCACTTATCA+GGG | - | chr2.3:20983465-20983484 | MS.gene060213:intron | 25.0% |
! | ATACAATTCTTAACAAGCAA+AGG | + | chr2.3:20982255-20982274 | None:intergenic | 25.0% |
! | ATAGAATGAAAATCAGCAAA+TGG | + | chr2.3:20982828-20982847 | None:intergenic | 25.0% |
! | ATCATTAACCCTAGAAAATT+TGG | - | chr2.3:20981789-20981808 | MS.gene060213:CDS | 25.0% |
! | CATTTGGAAGATTGAAATTA+GGG | + | chr2.3:20983706-20983725 | None:intergenic | 25.0% |
! | TAATTTCAATCTTCCAAATG+AGG | - | chr2.3:20983706-20983725 | MS.gene060213:intron | 25.0% |
! | TATATCTGATACAAATCCAA+AGG | - | chr2.3:20982956-20982975 | MS.gene060213:CDS | 25.0% |
! | TCATTAACCCTAGAAAATTT+GGG | - | chr2.3:20981790-20981809 | MS.gene060213:CDS | 25.0% |
! | TCATTTGGAAGATTGAAATT+AGG | + | chr2.3:20983707-20983726 | None:intergenic | 25.0% |
!! | AAAAATGATGACTCCATTTT+TGG | + | chr2.3:20983881-20983900 | None:intergenic | 25.0% |
!! | ACTAATTTGTAATGTGAAAG+TGG | + | chr2.3:20981963-20981982 | None:intergenic | 25.0% |
!! | AGTTAAAACCCAAATTTTCT+AGG | + | chr2.3:20981801-20981820 | None:intergenic | 25.0% |
!! | GTTAAAACCCAAATTTTCTA+GGG | + | chr2.3:20981800-20981819 | None:intergenic | 25.0% |
!! | TTTAGTTTCATTATGCTTCA+AGG | + | chr2.3:20982027-20982046 | None:intergenic | 25.0% |
!!! | AAAATGGAGTCATCATTTTT+TGG | - | chr2.3:20983881-20983900 | MS.gene060213:intron | 25.0% |
!!! | AAATTTTTCAAGTGGGAAAA+GGG | - | chr2.3:20984035-20984054 | MS.gene060213:intron | 25.0% |
!!! | ATAGTGCTCTTTAATTTTTG+TGG | + | chr2.3:20982527-20982546 | None:intergenic | 25.0% |
!!! | CATGTTTTTTTACAAAGGAA+TGG | + | chr2.3:20981843-20981862 | None:intergenic | 25.0% |
!!! | GATGCAAAAAAATCACTTTT+TGG | + | chr2.3:20983947-20983966 | None:intergenic | 25.0% |
!!! | GGTTTTAACTGTTTTTTAGT+TGG | - | chr2.3:20981811-20981830 | MS.gene060213:CDS | 25.0% |
!!! | TGTTGATTTTTTCTATCATC+AGG | + | chr2.3:20983737-20983756 | None:intergenic | 25.0% |
AAAAAAACATGCAGAGAGAA+AGG | - | chr2.3:20981852-20981871 | MS.gene060213:CDS | 30.0% | |
AGGAATAAAAATTGAAGGAC+AGG | + | chr2.3:20982327-20982346 | None:intergenic | 30.0% | |
ATGAAATGAGATCTGCAAAA+TGG | - | chr2.3:20983564-20983583 | MS.gene060213:intron | 30.0% | |
GATAATGTTGTTCACTTATC+AGG | - | chr2.3:20983464-20983483 | MS.gene060213:intron | 30.0% | |
GTTTCTTAAAGAGAAGTTAG+TGG | - | chr2.3:20983376-20983395 | MS.gene060213:intron | 30.0% | |
TAGGGTTAATGATTACATGT+TGG | + | chr2.3:20981782-20981801 | None:intergenic | 30.0% | |
TGAAATGAGATCTGCAAAAT+GGG | - | chr2.3:20983565-20983584 | MS.gene060213:intron | 30.0% | |
TGGAAAAGACTACAATAACT+TGG | - | chr2.3:20982991-20983010 | MS.gene060213:CDS | 30.0% | |
! | TAGATTTTCTGATGTGTACA+TGG | - | chr2.3:20984060-20984079 | MS.gene060213:intron | 30.0% |
! | TTTTGCATCTTTTGCTGAAA+TGG | - | chr2.3:20983958-20983977 | MS.gene060213:intron | 30.0% |
!! | TTGTTTAGCCTTTTCTTTTG+AGG | - | chr2.3:20984003-20984022 | MS.gene060213:intron | 30.0% |
!!! | CAAGCTGAAATTTTTCAAGT+GGG | - | chr2.3:20984028-20984047 | MS.gene060213:intron | 30.0% |
!!! | CTCTGCATGTTTTTTTACAA+AGG | + | chr2.3:20981848-20981867 | None:intergenic | 30.0% |
!!! | GAAATTTTTCAAGTGGGAAA+AGG | - | chr2.3:20984034-20984053 | MS.gene060213:intron | 30.0% |
!!! | TCAAGCTGAAATTTTTCAAG+TGG | - | chr2.3:20984027-20984046 | MS.gene060213:intron | 30.0% |
ACAACAGTAAAACCAACAAC+TGG | + | chr2.3:20984148-20984167 | None:intergenic | 35.0% | |
AGCTTGAACCTCAAAAGAAA+AGG | + | chr2.3:20984014-20984033 | None:intergenic | 35.0% | |
CACGTACTAGAAAGAAAACA+AGG | + | chr2.3:20982100-20982119 | None:intergenic | 35.0% | |
GAGAAGAGATTGAATCAAAG+TGG | - | chr2.3:20983425-20983444 | MS.gene060213:intron | 35.0% | |
TCCAAAGGATGAAACAAACA+TGG | - | chr2.3:20982971-20982990 | MS.gene060213:CDS | 35.0% | |
TCCATGTTTGTTTCATCCTT+TGG | + | chr2.3:20982975-20982994 | None:intergenic | 35.0% | |
TGATGCTATTGAACACAATG+TGG | - | chr2.3:20983604-20983623 | MS.gene060213:intron | 35.0% | |
TGATTTGATTCTTCTGCATG+AGG | + | chr2.3:20984216-20984235 | None:intergenic | 35.0% | |
TGCTCTTAGATGAAGAACTT+TGG | + | chr2.3:20982919-20982938 | None:intergenic | 35.0% | |
TTCAGCATATGCACCTTTAA+CGG | + | chr2.3:20983114-20983133 | None:intergenic | 35.0% | |
TTCCTAGCTAATTTCTTGCT+TGG | + | chr2.3:20982891-20982910 | None:intergenic | 35.0% | |
TTGCTTTAACACATAGATCG+AGG | + | chr2.3:20982656-20982675 | None:intergenic | 35.0% | |
! | AAAAAGCATGCAAGAAGCAA+AGG | + | chr2.3:20982347-20982366 | None:intergenic | 35.0% |
! | GAGACTTGTTCATCCAAAAA+TGG | - | chr2.3:20983865-20983884 | MS.gene060213:intron | 35.0% |
! | TTTTGCTGAAATGGCTAAGA+GGG | - | chr2.3:20983967-20983986 | MS.gene060213:intron | 35.0% |
!! | CTTGTTTTCTTTCTAGTACG+TGG | - | chr2.3:20982098-20982117 | MS.gene060213:CDS | 35.0% |
!! | TTTTTGGCAACATGATTCAC+AGG | - | chr2.3:20983897-20983916 | MS.gene060213:intron | 35.0% |
AGCTGAATCGAAGGAGATAA+AGG | - | chr2.3:20983280-20983299 | MS.gene060213:intron | 40.0% | |
CACCAAGCAAGAAATTAGCT+AGG | - | chr2.3:20982886-20982905 | MS.gene060213:CDS | 40.0% | |
CAGAAGCTTCAATTCCATCA+GGG | + | chr2.3:20983163-20983182 | None:intergenic | 40.0% | |
GCTAGCATTTCAACCGTTAA+AGG | - | chr2.3:20983098-20983117 | MS.gene060213:intron | 40.0% | |
GCTGAATCGAAGGAGATAAA+GGG | - | chr2.3:20983281-20983300 | MS.gene060213:intron | 40.0% | |
TCAATTCCATCAGGGTCAAA+AGG | + | chr2.3:20983155-20983174 | None:intergenic | 40.0% | |
TCAGAAGAAGAACCAGTTGT+TGG | - | chr2.3:20984133-20984152 | MS.gene060213:intron | 40.0% | |
TCAGAAGCTTCAATTCCATC+AGG | + | chr2.3:20983164-20983183 | None:intergenic | 40.0% | |
! | ATTCACAGGAACCTTTTGAG+TGG | - | chr2.3:20983911-20983930 | MS.gene060213:intron | 40.0% |
! | CTTTTGCTGAAATGGCTAAG+AGG | - | chr2.3:20983966-20983985 | MS.gene060213:intron | 40.0% |
! | GTTTTACCAATCCTAAAGCC+AGG | + | chr2.3:20984172-20984191 | None:intergenic | 40.0% |
! | TTACTGTTGTTCCTGGCTTT+AGG | - | chr2.3:20984158-20984177 | MS.gene060213:intron | 40.0% |
!! | GATCGATTCGAAACTTTGTG+AGG | - | chr2.3:20983531-20983550 | MS.gene060213:intron | 40.0% |
!!! | GTTGGTTTTACTGTTGTTCC+TGG | - | chr2.3:20984151-20984170 | MS.gene060213:intron | 40.0% |
AATTGCGCAAACGACGATCT+TGG | + | chr2.3:20983827-20983846 | None:intergenic | 45.0% | |
AGGACAGTAGCAAAATGGCT+AGG | + | chr2.3:20983497-20983516 | None:intergenic | 45.0% | |
AGTATCGCTTTCTCTGGTGA+AGG | + | chr2.3:20983257-20983276 | None:intergenic | 45.0% | |
ATCGAGGACTTCAGTAGTGA+AGG | + | chr2.3:20982640-20982659 | None:intergenic | 45.0% | |
CTGTGATTCCAACTTCTTCG+CGG | + | chr2.3:20983330-20983349 | None:intergenic | 45.0% | |
GAAACTCTCCACCACTCAAA+AGG | + | chr2.3:20983925-20983944 | None:intergenic | 45.0% | |
GACGAAGGACAGTAGCAAAA+TGG | + | chr2.3:20983502-20983521 | None:intergenic | 45.0% | |
GATACTTGCAGCTGAATCGA+AGG | - | chr2.3:20983271-20983290 | MS.gene060213:intron | 45.0% | |
TCGAGGACTTCAGTAGTGAA+GGG | + | chr2.3:20982639-20982658 | None:intergenic | 45.0% | |
!! | GTTGTTCCTGGCTTTAGGAT+TGG | - | chr2.3:20984163-20984182 | MS.gene060213:intron | 45.0% |
!! | TCATCAGGAAGTGCCTCATT+TGG | + | chr2.3:20983722-20983741 | None:intergenic | 45.0% |
!! | TTATGCTTCAAGGAGCGTTG+AGG | + | chr2.3:20982017-20982036 | None:intergenic | 45.0% |
CGCGAAGAAGTTGGAATCAC+AGG | - | chr2.3:20983328-20983347 | MS.gene060213:intron | 50.0% | |
GGGCGTCATTAAAACCTACG+AGG | - | chr2.3:20983301-20983320 | MS.gene060213:intron | 50.0% | |
! | CAGACACCTTTTGACCCTGA+TGG | - | chr2.3:20983146-20983165 | MS.gene060213:intron | 50.0% |
! | GCTGCAAGTATCGCTTTCTC+TGG | + | chr2.3:20983263-20983282 | None:intergenic | 50.0% |
!! | CACAGGAACCTTTTGAGTGG+TGG | - | chr2.3:20983914-20983933 | MS.gene060213:intron | 50.0% |
!! | TCAAGGAGCGTTGAGGCAAT+AGG | + | chr2.3:20982010-20982029 | None:intergenic | 50.0% |
!! | TTGCTTGGTGTCACTGCTGA+AGG | + | chr2.3:20982876-20982895 | None:intergenic | 50.0% |
CGAGGTTACCGCGAAGAAGT+TGG | - | chr2.3:20983319-20983338 | MS.gene060213:intron | 55.0% | |
CGTCGTTTGCGCAATTCTGC+AGG | - | chr2.3:20983831-20983850 | MS.gene060213:intron | 55.0% | |
CTTCTTCGCGGTAACCTCGT+AGG | + | chr2.3:20983318-20983337 | None:intergenic | 55.0% | |
TCGATCTAACCGCGTGACGA+AGG | + | chr2.3:20983517-20983536 | None:intergenic | 55.0% | |
TGCTACTGTCCTTCGTCACG+CGG | - | chr2.3:20983505-20983524 | MS.gene060213:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 20981726 | 20984237 | 20981726 | ID=MS.gene060213 |
chr2.3 | mRNA | 20981726 | 20984237 | 20981726 | ID=MS.gene060213.t1;Parent=MS.gene060213 |
chr2.3 | exon | 20984211 | 20984237 | 20984211 | ID=MS.gene060213.t1.exon1;Parent=MS.gene060213.t1 |
chr2.3 | CDS | 20984211 | 20984237 | 20984211 | ID=cds.MS.gene060213.t1;Parent=MS.gene060213.t1 |
chr2.3 | exon | 20981726 | 20983105 | 20981726 | ID=MS.gene060213.t1.exon2;Parent=MS.gene060213.t1 |
chr2.3 | CDS | 20981726 | 20983105 | 20981726 | ID=cds.MS.gene060213.t1;Parent=MS.gene060213.t1 |
Gene Sequence |
Protein sequence |