Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38998.t1 | XP_024628351.1 | 96.9 | 450 | 14 | 0 | 1 | 450 | 1 | 450 | 1.20E-243 | 852 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38998.t1 | F4KGE8 | 30.5 | 407 | 238 | 14 | 63 | 436 | 161 | 555 | 8.5e-36 | 152.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38998.t1 | A0A072TQI5 | 96.9 | 450 | 14 | 0 | 1 | 450 | 1 | 450 | 8.8e-244 | 852.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene38998 | 0.855621 | 5.58E-62 | -1.69E-46 |
| MS.gene049983 | MS.gene38998 | 0.820317 | 7.31E-53 | -1.69E-46 |
| MS.gene050105 | MS.gene38998 | 0.820054 | 8.40E-53 | -1.69E-46 |
| MS.gene051122 | MS.gene38998 | 0.822177 | 2.72E-53 | -1.69E-46 |
| MS.gene051541 | MS.gene38998 | 0.812589 | 3.93E-51 | -1.69E-46 |
| MS.gene052493 | MS.gene38998 | 0.801092 | 1.06E-48 | -1.69E-46 |
| MS.gene052674 | MS.gene38998 | 0.812321 | 4.50E-51 | -1.69E-46 |
| MS.gene052675 | MS.gene38998 | 0.808341 | 3.25E-50 | -1.69E-46 |
| MS.gene052677 | MS.gene38998 | 0.808446 | 3.08E-50 | -1.69E-46 |
| MS.gene053298 | MS.gene38998 | 0.830744 | 2.47E-55 | -1.69E-46 |
| MS.gene053963 | MS.gene38998 | 0.818017 | 2.44E-52 | -1.69E-46 |
| MS.gene054479 | MS.gene38998 | 0.84656 | 2.01E-59 | -1.69E-46 |
| MS.gene054892 | MS.gene38998 | 0.819914 | 9.04E-53 | -1.69E-46 |
| MS.gene054893 | MS.gene38998 | 0.818823 | 1.60E-52 | -1.69E-46 |
| MS.gene054957 | MS.gene38998 | 0.814099 | 1.83E-51 | -1.69E-46 |
| MS.gene055327 | MS.gene38998 | 0.809844 | 1.55E-50 | -1.69E-46 |
| MS.gene056045 | MS.gene38998 | 0.801113 | 1.05E-48 | -1.69E-46 |
| MS.gene056779 | MS.gene38998 | 0.804979 | 1.67E-49 | -1.69E-46 |
| MS.gene057155 | MS.gene38998 | 0.828638 | 8.04E-55 | -1.69E-46 |
| MS.gene058223 | MS.gene38998 | -0.838102 | 3.51E-57 | -1.69E-46 |
| MS.gene058429 | MS.gene38998 | 0.819568 | 1.08E-52 | -1.69E-46 |
| MS.gene058897 | MS.gene38998 | 0.819961 | 8.82E-53 | -1.69E-46 |
| MS.gene059224 | MS.gene38998 | 0.804706 | 1.90E-49 | -1.69E-46 |
| MS.gene059686 | MS.gene38998 | 0.801899 | 7.24E-49 | -1.69E-46 |
| MS.gene060435 | MS.gene38998 | 0.823464 | 1.37E-53 | -1.69E-46 |
| MS.gene060850 | MS.gene38998 | 0.821036 | 5.00E-53 | -1.69E-46 |
| MS.gene060851 | MS.gene38998 | 0.84373 | 1.17E-58 | -1.69E-46 |
| MS.gene060852 | MS.gene38998 | 0.842122 | 3.14E-58 | -1.69E-46 |
| MS.gene060932 | MS.gene38998 | 0.802718 | 4.91E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene38998 | MS.gene27831 | PPI |
| MS.gene38998 | MS.gene058492 | PPI |
| MS.gene38998 | MS.gene48940 | PPI |
| MS.gene38998 | MS.gene45832 | PPI |
| MS.gene38998 | MS.gene48223 | PPI |
| MS.gene38998 | MS.gene023604 | PPI |
| MS.gene38998 | MS.gene059205 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38998.t1 | MTR_8g059485 | 97.556 | 450 | 11 | 0 | 1 | 450 | 1 | 450 | 0.0 | 902 |
| MS.gene38998.t1 | MTR_8g059485 | 97.556 | 450 | 11 | 0 | 1 | 450 | 10 | 459 | 0.0 | 901 |
| MS.gene38998.t1 | MTR_2g075910 | 60.744 | 484 | 145 | 13 | 1 | 453 | 1 | 470 | 0.0 | 531 |
| MS.gene38998.t1 | MTR_8g087400 | 43.103 | 464 | 232 | 8 | 1 | 437 | 1 | 459 | 3.97e-119 | 356 |
| MS.gene38998.t1 | MTR_4g025420 | 41.131 | 389 | 212 | 8 | 61 | 439 | 34 | 415 | 9.12e-89 | 276 |
| MS.gene38998.t1 | MTR_0178s0030 | 34.010 | 394 | 236 | 9 | 59 | 437 | 139 | 523 | 2.15e-60 | 206 |
| MS.gene38998.t1 | MTR_3g462150 | 30.488 | 410 | 251 | 11 | 52 | 436 | 77 | 477 | 2.73e-48 | 172 |
| MS.gene38998.t1 | MTR_5g075180 | 32.283 | 381 | 223 | 9 | 65 | 438 | 89 | 441 | 3.19e-47 | 169 |
| MS.gene38998.t1 | MTR_8g106210 | 24.915 | 293 | 186 | 10 | 167 | 447 | 197 | 467 | 2.52e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38998.t1 | AT1G53380 | 53.187 | 455 | 191 | 8 | 1 | 437 | 1 | 451 | 3.17e-164 | 471 |
| MS.gene38998.t1 | AT1G53380 | 53.187 | 455 | 191 | 8 | 1 | 437 | 1 | 451 | 3.17e-164 | 471 |
| MS.gene38998.t1 | AT1G53380 | 53.187 | 455 | 191 | 8 | 1 | 437 | 1 | 451 | 3.17e-164 | 471 |
| MS.gene38998.t1 | AT1G53380 | 53.187 | 455 | 191 | 8 | 1 | 437 | 1 | 451 | 3.17e-164 | 471 |
| MS.gene38998.t1 | AT1G53380 | 53.187 | 455 | 191 | 8 | 1 | 437 | 1 | 451 | 3.17e-164 | 471 |
| MS.gene38998.t1 | AT3G14870 | 51.489 | 470 | 195 | 11 | 1 | 441 | 5 | 470 | 9.43e-158 | 455 |
| MS.gene38998.t1 | AT3G14870 | 51.489 | 470 | 195 | 11 | 1 | 441 | 2 | 467 | 1.28e-157 | 454 |
| MS.gene38998.t1 | AT3G14870 | 51.489 | 470 | 195 | 11 | 1 | 441 | 1 | 466 | 1.95e-157 | 454 |
| MS.gene38998.t1 | AT3G14870 | 51.489 | 470 | 195 | 11 | 1 | 441 | 1 | 466 | 1.95e-157 | 454 |
| MS.gene38998.t1 | AT3G14870 | 51.489 | 470 | 195 | 11 | 1 | 441 | 1 | 466 | 1.95e-157 | 454 |
| MS.gene38998.t1 | AT1G29300 | 41.151 | 469 | 227 | 9 | 1 | 437 | 1 | 452 | 7.07e-110 | 332 |
| MS.gene38998.t1 | AT2G45260 | 39.846 | 389 | 214 | 8 | 63 | 437 | 37 | 419 | 3.83e-87 | 273 |
| MS.gene38998.t1 | AT3G60680 | 34.974 | 386 | 228 | 10 | 64 | 437 | 120 | 494 | 1.04e-60 | 206 |
| MS.gene38998.t1 | AT2G30380 | 34.127 | 378 | 203 | 9 | 66 | 438 | 76 | 412 | 1.78e-50 | 177 |
| MS.gene38998.t1 | AT4G34080 | 36.765 | 272 | 159 | 5 | 63 | 324 | 13 | 281 | 3.85e-48 | 167 |
| MS.gene38998.t1 | AT5G58960 | 31.436 | 404 | 238 | 13 | 63 | 436 | 86 | 480 | 6.93e-46 | 166 |
| MS.gene38998.t1 | AT5G58960 | 31.436 | 404 | 238 | 13 | 63 | 436 | 86 | 480 | 6.93e-46 | 166 |
| MS.gene38998.t1 | AT5G58960 | 31.436 | 404 | 238 | 13 | 63 | 436 | 161 | 555 | 2.44e-45 | 166 |
| MS.gene38998.t1 | AT4G33320 | 34.122 | 296 | 171 | 7 | 45 | 329 | 5 | 287 | 2.45e-43 | 154 |
| MS.gene38998.t1 | AT2G32130 | 45.238 | 126 | 67 | 1 | 63 | 188 | 34 | 157 | 3.32e-25 | 101 |
| MS.gene38998.t1 | AT4G36100 | 41.935 | 93 | 49 | 2 | 63 | 152 | 13 | 103 | 5.30e-15 | 74.7 |
Find 66 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAAGAAAATGTTGTTTAT+AGG | 0.198493 | 8.4:+48639525 | MS.gene38998:CDS |
| AAGATGGCAAAAGGTGATTT+TGG | 0.202616 | 8.4:-48639731 | None:intergenic |
| AAAGAATGATGCCTCCATTT+TGG | 0.219724 | 8.4:-48639786 | None:intergenic |
| GCTCTTCATCTTCTTCTTCA+TGG | 0.223159 | 8.4:-48638938 | None:intergenic |
| AATTGTTGCAGCCGAATTAA+AGG | 0.260563 | 8.4:+48639184 | MS.gene38998:CDS |
| TCATTGTGATTATCGAAATA+AGG | 0.260665 | 8.4:-48639617 | None:intergenic |
| CAAGCTGAAATATTTCAAAT+AGG | 0.264277 | 8.4:+48639929 | MS.gene38998:CDS |
| GTTCACTTCATTTGCTGAAA+TGG | 0.292950 | 8.4:+48639859 | MS.gene38998:CDS |
| AAAATGGAGGCATCATTCTT+TGG | 0.328174 | 8.4:+48639788 | MS.gene38998:CDS |
| GTTGCTTTCACTGTAGTTCC+AGG | 0.358020 | 8.4:+48640037 | MS.gene38998:CDS |
| GTTTCTTAAAGAGAAGTTAG+AGG | 0.364153 | 8.4:+48639289 | MS.gene38998:CDS |
| AAGCTGAAATATTTCAAATA+GGG | 0.377206 | 8.4:+48639930 | MS.gene38998:CDS |
| AGAATCGAAGTCGCTTCTTA+AGG | 0.377855 | 8.4:+48639253 | MS.gene38998:CDS |
| GAGACTAGTTCACTCCAAAA+TGG | 0.381698 | 8.4:+48639772 | MS.gene38998:CDS |
| TTATGACCGTGATGGAATTC+AGG | 0.383293 | 8.4:+48639061 | MS.gene38998:CDS |
| ACTCTTCAGCTCCTTTAATT+CGG | 0.393760 | 8.4:-48639195 | None:intergenic |
| TCGAAGCTTTGTGAAGTTGT+TGG | 0.425314 | 8.4:+48639448 | MS.gene38998:CDS |
| GAATTCCATCACGGTCATAA+GGG | 0.426429 | 8.4:-48639058 | None:intergenic |
| TGAATTCCATCACGGTCATA+AGG | 0.426822 | 8.4:-48639059 | None:intergenic |
| AATTCTTCTATAGATGGATT+CGG | 0.428552 | 8.4:+48638782 | None:intergenic |
| CATTGTGATTATCGAAATAA+GGG | 0.448793 | 8.4:-48639616 | None:intergenic |
| CTGAAATGGCTAAGAGGGTA+TGG | 0.458646 | 8.4:+48639873 | MS.gene38998:CDS |
| GACACCACACAAGAGTAAAC+TGG | 0.474231 | 8.4:+48638821 | MS.gene38998:CDS |
| GTGAACAAGTTGTTGTCATC+GGG | 0.477261 | 8.4:-48639842 | None:intergenic |
| ACTGGAGTTGCAGAAGTTGA+TGG | 0.478285 | 8.4:+48638882 | MS.gene38998:CDS |
| CATTTGCTGAAATGGCTAAG+AGG | 0.480109 | 8.4:+48639867 | MS.gene38998:CDS |
| ATAATAACCCATAAAATCGT+GGG | 0.489915 | 8.4:+48639221 | MS.gene38998:CDS |
| GTTTATGAGATGAGATCTGC+TGG | 0.490000 | 8.4:+48639470 | MS.gene38998:CDS |
| TGAGATGAGATCTGCTGGTT+GGG | 0.495349 | 8.4:+48639475 | MS.gene38998:CDS |
| TGCTGATAAATTAATAGTCT+CGG | 0.502363 | 8.4:+48639085 | MS.gene38998:CDS |
| CTTGATAATCTACACATCTC+AGG | 0.509716 | 8.4:+48639374 | MS.gene38998:CDS |
| ACCCAACAAAAGATGGCAAA+AGG | 0.514310 | 8.4:-48639740 | None:intergenic |
| TAGCTGAGTTAAAGCAGTGT+TGG | 0.515094 | 8.4:+48639120 | MS.gene38998:CDS |
| CAGATTCTCTGATGTATACA+TGG | 0.519514 | 8.4:+48639961 | MS.gene38998:CDS |
| ATTCAATTTCGATCCTTCAC+CGG | 0.523812 | 8.4:+48639154 | MS.gene38998:CDS |
| ACAATTGCTCCCTCCGGTGA+AGG | 0.525485 | 8.4:-48639167 | None:intergenic |
| GCTGCAACAATTGCTCCCTC+CGG | 0.528419 | 8.4:-48639173 | None:intergenic |
| GACATGAAACAAAGGAATGT+TGG | 0.529644 | 8.4:+48639812 | MS.gene38998:CDS |
| ATTTGAAATATTTCAGCTTG+AGG | 0.530973 | 8.4:-48639926 | None:intergenic |
| ATTTGCTGAAATGGCTAAGA+GGG | 0.540204 | 8.4:+48639868 | MS.gene38998:CDS |
| TATAATAACCCATAAAATCG+TGG | 0.541558 | 8.4:+48639220 | MS.gene38998:CDS |
| GAAATATTTCAAATAGGGAA+AGG | 0.542615 | 8.4:+48639935 | MS.gene38998:CDS |
| AGTGAACAAGTTGTTGTCAT+CGG | 0.555601 | 8.4:-48639843 | None:intergenic |
| AACAGAACAAGTTAATTGAA+AGG | 0.567554 | 8.4:+48639321 | MS.gene38998:CDS |
| GTATTTCACCCAACAAAAGA+TGG | 0.568758 | 8.4:-48639747 | None:intergenic |
| CTTCGTGTAAAATCAATGAC+TGG | 0.569128 | 8.4:+48638864 | MS.gene38998:CDS |
| ATGAGATGAGATCTGCTGGT+TGG | 0.569372 | 8.4:+48639474 | MS.gene38998:CDS |
| AGAGCAGATATAAAATGTGT+AGG | 0.585231 | 8.4:-48639404 | None:intergenic |
| CAATTTCGATCCTTCACCGG+AGG | 0.591877 | 8.4:+48639157 | MS.gene38998:CDS |
| TCTTAAAGAGAAGTTAGAGG+AGG | 0.599840 | 8.4:+48639292 | MS.gene38998:CDS |
| AATTCCATCACGGTCATAAG+GGG | 0.601774 | 8.4:-48639057 | None:intergenic |
| GAAAGGAGGTTAAATCAAAG+TGG | 0.604775 | 8.4:+48639338 | MS.gene38998:CDS |
| AATTTCGATCCTTCACCGGA+GGG | 0.612988 | 8.4:+48639158 | MS.gene38998:CDS |
| ACACTGCTTTAACTCAGCTA+AGG | 0.616271 | 8.4:-48639117 | None:intergenic |
| AGAACAAGTTAATTGAAAGG+AGG | 0.617633 | 8.4:+48639324 | MS.gene38998:CDS |
| GTTAAAATCAGTGAATGCAA+AGG | 0.621096 | 8.4:+48639691 | MS.gene38998:CDS |
| GAATCCCCTTATGACCGTGA+TGG | 0.621817 | 8.4:+48639053 | MS.gene38998:CDS |
| TATATCTGCTCTTCGCCACG+CGG | 0.626205 | 8.4:+48639415 | MS.gene38998:CDS |
| CGAGCCAGTTTACTCTTGTG+TGG | 0.650973 | 8.4:-48638825 | None:intergenic |
| TCTTTGGTGACATGAAACAA+AGG | 0.654420 | 8.4:+48639804 | MS.gene38998:CDS |
| TGTGATTATCGAAATAAGGG+AGG | 0.664917 | 8.4:-48639613 | None:intergenic |
| TAATAACCCATAAAATCGTG+GGG | 0.666198 | 8.4:+48639222 | MS.gene38998:CDS |
| CAGCATCCTGAATTCCATCA+CGG | 0.672142 | 8.4:-48639067 | None:intergenic |
| ACTAGTTCACTCCAAAATGG+AGG | 0.674833 | 8.4:+48639775 | MS.gene38998:CDS |
| GTGGCTGTAATAACTGTGAG+AGG | 0.692386 | 8.4:-48640099 | None:intergenic |
| TTCGAATTGATTTAACCGCG+TGG | 0.713873 | 8.4:-48639430 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAGAAAATGTTGTTTAT+AGG | + | chr8.4:48639525-48639544 | MS.gene38998:CDS | 15.0% |
| !! | AAGCTGAAATATTTCAAATA+GGG | + | chr8.4:48639930-48639949 | MS.gene38998:CDS | 20.0% |
| !!! | AACAAAACACAATTTTTCTT+TGG | + | chr8.4:48639656-48639675 | MS.gene38998:CDS | 20.0% |
| !!! | AATTGTGTTTTGTTTTTATC+AGG | - | chr8.4:48639650-48639669 | None:intergenic | 20.0% |
| !!! | ACAAAACACAATTTTTCTTT+GGG | + | chr8.4:48639657-48639676 | MS.gene38998:CDS | 20.0% |
| ! | AACAGAACAAGTTAATTGAA+AGG | + | chr8.4:48639321-48639340 | MS.gene38998:CDS | 25.0% |
| ! | ATAATAACCCATAAAATCGT+GGG | + | chr8.4:48639221-48639240 | MS.gene38998:CDS | 25.0% |
| ! | CAAGCTGAAATATTTCAAAT+AGG | + | chr8.4:48639929-48639948 | MS.gene38998:CDS | 25.0% |
| ! | CATTGTGATTATCGAAATAA+GGG | - | chr8.4:48639619-48639638 | None:intergenic | 25.0% |
| ! | GAAATATTTCAAATAGGGAA+AGG | + | chr8.4:48639935-48639954 | MS.gene38998:CDS | 25.0% |
| ! | TATAATAACCCATAAAATCG+TGG | + | chr8.4:48639220-48639239 | MS.gene38998:CDS | 25.0% |
| ! | TCATTGTGATTATCGAAATA+AGG | - | chr8.4:48639620-48639639 | None:intergenic | 25.0% |
| ! | TGCTGATAAATTAATAGTCT+CGG | + | chr8.4:48639085-48639104 | MS.gene38998:CDS | 25.0% |
| !! | ATTTGAAATATTTCAGCTTG+AGG | - | chr8.4:48639929-48639948 | None:intergenic | 25.0% |
| AGAACAAGTTAATTGAAAGG+AGG | + | chr8.4:48639324-48639343 | MS.gene38998:CDS | 30.0% | |
| AGAGCAGATATAAAATGTGT+AGG | - | chr8.4:48639407-48639426 | None:intergenic | 30.0% | |
| GTTAAAATCAGTGAATGCAA+AGG | + | chr8.4:48639691-48639710 | MS.gene38998:CDS | 30.0% | |
| GTTTCTTAAAGAGAAGTTAG+AGG | + | chr8.4:48639289-48639308 | MS.gene38998:CDS | 30.0% | |
| TAATAACCCATAAAATCGTG+GGG | + | chr8.4:48639222-48639241 | MS.gene38998:CDS | 30.0% | |
| TGAAGAGCTTAAGAAAAAAG+TGG | + | chr8.4:48638953-48638972 | MS.gene38998:CDS | 30.0% | |
| ! | AAACACAATTTTTCTTTGGG+AGG | + | chr8.4:48639660-48639679 | MS.gene38998:CDS | 30.0% |
| ! | GTTTTACCAATCTTAAAACC+TGG | - | chr8.4:48640058-48640077 | None:intergenic | 30.0% |
| !! | AATTGAGTCTTTTGTTTGCA+GGG | + | chr8.4:48639571-48639590 | MS.gene38998:CDS | 30.0% |
| AATTGTTGCAGCCGAATTAA+AGG | + | chr8.4:48639184-48639203 | MS.gene38998:CDS | 35.0% | |
| ACTCTTCAGCTCCTTTAATT+CGG | - | chr8.4:48639198-48639217 | None:intergenic | 35.0% | |
| AGTGAACAAGTTGTTGTCAT+CGG | - | chr8.4:48639846-48639865 | None:intergenic | 35.0% | |
| ATTCAATTTCGATCCTTCAC+CGG | + | chr8.4:48639154-48639173 | MS.gene38998:CDS | 35.0% | |
| CAGATTCTCTGATGTATACA+TGG | + | chr8.4:48639961-48639980 | MS.gene38998:CDS | 35.0% | |
| CTTCGTGTAAAATCAATGAC+TGG | + | chr8.4:48638864-48638883 | MS.gene38998:CDS | 35.0% | |
| GAAAGGAGGTTAAATCAAAG+TGG | + | chr8.4:48639338-48639357 | MS.gene38998:CDS | 35.0% | |
| GACATGAAACAAAGGAATGT+TGG | + | chr8.4:48639812-48639831 | MS.gene38998:CDS | 35.0% | |
| GTATTTCACCCAACAAAAGA+TGG | - | chr8.4:48639750-48639769 | None:intergenic | 35.0% | |
| TCTTAAAGAGAAGTTAGAGG+AGG | + | chr8.4:48639292-48639311 | MS.gene38998:CDS | 35.0% | |
| TGTGATTATCGAAATAAGGG+AGG | - | chr8.4:48639616-48639635 | None:intergenic | 35.0% | |
| ! | AAAGAATGATGCCTCCATTT+TGG | - | chr8.4:48639789-48639808 | None:intergenic | 35.0% |
| ! | AAGATGGCAAAAGGTGATTT+TGG | - | chr8.4:48639734-48639753 | None:intergenic | 35.0% |
| ! | ACCTTTTGCCATCTTTTGTT+GGG | + | chr8.4:48639739-48639758 | MS.gene38998:CDS | 35.0% |
| ! | ATTTGCTGAAATGGCTAAGA+GGG | + | chr8.4:48639868-48639887 | MS.gene38998:CDS | 35.0% |
| ! | CTTGATAATCTACACATCTC+AGG | + | chr8.4:48639374-48639393 | MS.gene38998:CDS | 35.0% |
| ! | GTTCACTTCATTTGCTGAAA+TGG | + | chr8.4:48639859-48639878 | MS.gene38998:CDS | 35.0% |
| ! | TCTTTGGTGACATGAAACAA+AGG | + | chr8.4:48639804-48639823 | MS.gene38998:CDS | 35.0% |
| ! | TTTCTTTTCACTTGAGCTTG+TGG | - | chr8.4:48640121-48640140 | None:intergenic | 35.0% |
| !! | AAAATGGAGGCATCATTCTT+TGG | + | chr8.4:48639788-48639807 | MS.gene38998:CDS | 35.0% |
| !! | CAATTGAGTCTTTTGTTTGC+AGG | + | chr8.4:48639570-48639589 | MS.gene38998:CDS | 35.0% |
| !!! | GTAGTTCCAGGTTTTAAGAT+TGG | + | chr8.4:48640049-48640068 | MS.gene38998:CDS | 35.0% |
| AATTCCATCACGGTCATAAG+GGG | - | chr8.4:48639060-48639079 | None:intergenic | 40.0% | |
| ACACTGCTTTAACTCAGCTA+AGG | - | chr8.4:48639120-48639139 | None:intergenic | 40.0% | |
| ACCCAACAAAAGATGGCAAA+AGG | - | chr8.4:48639743-48639762 | None:intergenic | 40.0% | |
| ACTAGTTCACTCCAAAATGG+AGG | + | chr8.4:48639775-48639794 | MS.gene38998:CDS | 40.0% | |
| AGAATCGAAGTCGCTTCTTA+AGG | + | chr8.4:48639253-48639272 | MS.gene38998:CDS | 40.0% | |
| GAATTCCATCACGGTCATAA+GGG | - | chr8.4:48639061-48639080 | None:intergenic | 40.0% | |
| GCTCTTCATCTTCTTCTTCA+TGG | - | chr8.4:48638941-48638960 | None:intergenic | 40.0% | |
| GTGAACAAGTTGTTGTCATC+GGG | - | chr8.4:48639845-48639864 | None:intergenic | 40.0% | |
| GTTTATGAGATGAGATCTGC+TGG | + | chr8.4:48639470-48639489 | MS.gene38998:CDS | 40.0% | |
| TAGCTGAGTTAAAGCAGTGT+TGG | + | chr8.4:48639120-48639139 | MS.gene38998:CDS | 40.0% | |
| TGAATTCCATCACGGTCATA+AGG | - | chr8.4:48639062-48639081 | None:intergenic | 40.0% | |
| ! | ACTTCTTCCCCACGATTTTA+TGG | - | chr8.4:48639232-48639251 | None:intergenic | 40.0% |
| ! | CACCTTTTGCCATCTTTTGT+TGG | + | chr8.4:48639738-48639757 | MS.gene38998:CDS | 40.0% |
| ! | CATTTGCTGAAATGGCTAAG+AGG | + | chr8.4:48639867-48639886 | MS.gene38998:CDS | 40.0% |
| ! | CTTCTTCCCCACGATTTTAT+GGG | - | chr8.4:48639231-48639250 | None:intergenic | 40.0% |
| ! | GAGACTAGTTCACTCCAAAA+TGG | + | chr8.4:48639772-48639791 | MS.gene38998:CDS | 40.0% |
| ! | TCGAAGCTTTGTGAAGTTGT+TGG | + | chr8.4:48639448-48639467 | MS.gene38998:CDS | 40.0% |
| ! | TTATGACCGTGATGGAATTC+AGG | + | chr8.4:48639061-48639080 | MS.gene38998:CDS | 40.0% |
| ! | TTCGAATTGATTTAACCGCG+TGG | - | chr8.4:48639433-48639452 | None:intergenic | 40.0% |
| AATTTCGATCCTTCACCGGA+GGG | + | chr8.4:48639158-48639177 | MS.gene38998:CDS | 45.0% | |
| ACTGGAGTTGCAGAAGTTGA+TGG | + | chr8.4:48638882-48638901 | MS.gene38998:CDS | 45.0% | |
| ATGAGATGAGATCTGCTGGT+TGG | + | chr8.4:48639474-48639493 | MS.gene38998:CDS | 45.0% | |
| CAGCATCCTGAATTCCATCA+CGG | - | chr8.4:48639070-48639089 | None:intergenic | 45.0% | |
| CTGAAATGGCTAAGAGGGTA+TGG | + | chr8.4:48639873-48639892 | MS.gene38998:CDS | 45.0% | |
| GACACCACACAAGAGTAAAC+TGG | + | chr8.4:48638821-48638840 | MS.gene38998:CDS | 45.0% | |
| GTGGCTGTAATAACTGTGAG+AGG | - | chr8.4:48640102-48640121 | None:intergenic | 45.0% | |
| ! | GTTGCTTTCACTGTAGTTCC+AGG | + | chr8.4:48640037-48640056 | MS.gene38998:CDS | 45.0% |
| ! | TGAGATGAGATCTGCTGGTT+GGG | + | chr8.4:48639475-48639494 | MS.gene38998:CDS | 45.0% |
| CAATTTCGATCCTTCACCGG+AGG | + | chr8.4:48639157-48639176 | MS.gene38998:CDS | 50.0% | |
| CGAGCCAGTTTACTCTTGTG+TGG | - | chr8.4:48638828-48638847 | None:intergenic | 50.0% | |
| GAATCCCCTTATGACCGTGA+TGG | + | chr8.4:48639053-48639072 | MS.gene38998:CDS | 50.0% | |
| TATATCTGCTCTTCGCCACG+CGG | + | chr8.4:48639415-48639434 | MS.gene38998:CDS | 50.0% | |
| ACAATTGCTCCCTCCGGTGA+AGG | - | chr8.4:48639170-48639189 | None:intergenic | 55.0% | |
| GCTGCAACAATTGCTCCCTC+CGG | - | chr8.4:48639176-48639195 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 48638795 | 48640156 | 48638795 | ID=MS.gene38998 |
| chr8.4 | mRNA | 48638795 | 48640156 | 48638795 | ID=MS.gene38998.t1;Parent=MS.gene38998 |
| chr8.4 | exon | 48638795 | 48640156 | 48638795 | ID=MS.gene38998.t1.exon1;Parent=MS.gene38998.t1 |
| chr8.4 | CDS | 48638795 | 48640156 | 48638795 | ID=cds.MS.gene38998.t1;Parent=MS.gene38998.t1 |
| Gene Sequence |
| Protein sequence |
