Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32238.t1 | XP_024628351.1 | 96.2 | 450 | 17 | 0 | 1 | 450 | 1 | 450 | 3.00E-242 | 847.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32238.t1 | F4KGE8 | 30.5 | 407 | 238 | 14 | 63 | 436 | 161 | 555 | 6.5e-36 | 153.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32238.t1 | A0A072TQI5 | 96.2 | 450 | 17 | 0 | 1 | 450 | 1 | 450 | 2.2e-242 | 847.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene32238 | 0.867819 | 1.03E-65 | -1.69E-46 |
| MS.gene049419 | MS.gene32238 | -0.821843 | 3.25E-53 | -1.69E-46 |
| MS.gene049499 | MS.gene32238 | 0.812549 | 4.01E-51 | -1.69E-46 |
| MS.gene049983 | MS.gene32238 | 0.842447 | 2.57E-58 | -1.69E-46 |
| MS.gene050105 | MS.gene32238 | 0.837757 | 4.30E-57 | -1.69E-46 |
| MS.gene050654 | MS.gene32238 | 0.809954 | 1.47E-50 | -1.69E-46 |
| MS.gene051122 | MS.gene32238 | 0.847977 | 8.22E-60 | -1.69E-46 |
| MS.gene051368 | MS.gene32238 | 0.80243 | 5.63E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene32238 | 0.83387 | 4.16E-56 | -1.69E-46 |
| MS.gene051655 | MS.gene32238 | 0.80826 | 3.38E-50 | -1.69E-46 |
| MS.gene052493 | MS.gene32238 | 0.808931 | 2.43E-50 | -1.69E-46 |
| MS.gene052674 | MS.gene32238 | 0.840867 | 6.72E-58 | -1.69E-46 |
| MS.gene052675 | MS.gene32238 | 0.836457 | 9.25E-57 | -1.69E-46 |
| MS.gene052677 | MS.gene32238 | 0.831304 | 1.80E-55 | -1.69E-46 |
| MS.gene052954 | MS.gene32238 | 0.807937 | 3.96E-50 | -1.69E-46 |
| MS.gene053298 | MS.gene32238 | 0.823531 | 1.32E-53 | -1.69E-46 |
| MS.gene053726 | MS.gene32238 | 0.813636 | 2.32E-51 | -1.69E-46 |
| MS.gene053963 | MS.gene32238 | 0.808901 | 2.47E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene32238 | 0.857973 | 1.13E-62 | -1.69E-46 |
| MS.gene054892 | MS.gene32238 | 0.825922 | 3.60E-54 | -1.69E-46 |
| MS.gene054893 | MS.gene32238 | 0.82584 | 3.76E-54 | -1.69E-46 |
| MS.gene054957 | MS.gene32238 | 0.815612 | 8.46E-52 | -1.69E-46 |
| MS.gene055327 | MS.gene32238 | 0.80946 | 1.87E-50 | -1.69E-46 |
| MS.gene055864 | MS.gene32238 | 0.814374 | 1.59E-51 | -1.69E-46 |
| MS.gene056045 | MS.gene32238 | 0.812713 | 3.69E-51 | -1.69E-46 |
| MS.gene056779 | MS.gene32238 | 0.810697 | 1.01E-50 | -1.69E-46 |
| MS.gene057155 | MS.gene32238 | 0.847786 | 9.28E-60 | -1.69E-46 |
| MS.gene057208 | MS.gene32238 | 0.809312 | 2.01E-50 | -1.69E-46 |
| MS.gene058081 | MS.gene32238 | 0.813901 | 2.02E-51 | -1.69E-46 |
| MS.gene058223 | MS.gene32238 | -0.825745 | 3.96E-54 | -1.69E-46 |
| MS.gene058429 | MS.gene32238 | 0.84265 | 2.27E-58 | -1.69E-46 |
| MS.gene059224 | MS.gene32238 | 0.804561 | 2.04E-49 | -1.69E-46 |
| MS.gene059283 | MS.gene32238 | 0.803412 | 3.53E-49 | -1.69E-46 |
| MS.gene05952 | MS.gene32238 | 0.812911 | 3.34E-51 | -1.69E-46 |
| MS.gene060435 | MS.gene32238 | 0.843741 | 1.16E-58 | -1.69E-46 |
| MS.gene060850 | MS.gene32238 | 0.851379 | 9.22E-61 | -1.69E-46 |
| MS.gene060851 | MS.gene32238 | 0.862007 | 6.87E-64 | -1.69E-46 |
| MS.gene060852 | MS.gene32238 | 0.861206 | 1.21E-63 | -1.69E-46 |
| MS.gene060932 | MS.gene32238 | 0.825784 | 3.88E-54 | -1.69E-46 |
| MS.gene060935 | MS.gene32238 | 0.822592 | 2.18E-53 | -1.69E-46 |
| MS.gene060937 | MS.gene32238 | 0.838771 | 2.36E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene32238 | MS.gene058492 | PPI |
| MS.gene023604 | MS.gene32238 | PPI |
| MS.gene059205 | MS.gene32238 | PPI |
| MS.gene32238 | MS.gene48940 | PPI |
| MS.gene48223 | MS.gene32238 | PPI |
| MS.gene45832 | MS.gene32238 | PPI |
| MS.gene27831 | MS.gene32238 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32238.t1 | MTR_8g059485 | 96.889 | 450 | 14 | 0 | 1 | 450 | 10 | 459 | 0.0 | 896 |
| MS.gene32238.t1 | MTR_8g059485 | 96.889 | 450 | 14 | 0 | 1 | 450 | 1 | 450 | 0.0 | 896 |
| MS.gene32238.t1 | MTR_2g075910 | 60.744 | 484 | 145 | 13 | 1 | 453 | 1 | 470 | 0.0 | 533 |
| MS.gene32238.t1 | MTR_8g087400 | 43.319 | 464 | 231 | 8 | 1 | 437 | 1 | 459 | 1.69e-119 | 357 |
| MS.gene32238.t1 | MTR_4g025420 | 41.131 | 389 | 212 | 8 | 61 | 439 | 34 | 415 | 2.09e-88 | 276 |
| MS.gene32238.t1 | MTR_0178s0030 | 34.005 | 397 | 238 | 9 | 59 | 440 | 139 | 526 | 3.48e-60 | 205 |
| MS.gene32238.t1 | MTR_3g462150 | 30.488 | 410 | 251 | 11 | 52 | 436 | 77 | 477 | 2.09e-48 | 172 |
| MS.gene32238.t1 | MTR_5g075180 | 32.021 | 381 | 224 | 9 | 65 | 438 | 89 | 441 | 1.95e-46 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32238.t1 | AT1G53380 | 53.407 | 455 | 190 | 8 | 1 | 437 | 1 | 451 | 3.18e-165 | 473 |
| MS.gene32238.t1 | AT1G53380 | 53.407 | 455 | 190 | 8 | 1 | 437 | 1 | 451 | 3.18e-165 | 473 |
| MS.gene32238.t1 | AT1G53380 | 53.407 | 455 | 190 | 8 | 1 | 437 | 1 | 451 | 3.18e-165 | 473 |
| MS.gene32238.t1 | AT1G53380 | 53.407 | 455 | 190 | 8 | 1 | 437 | 1 | 451 | 3.18e-165 | 473 |
| MS.gene32238.t1 | AT1G53380 | 53.407 | 455 | 190 | 8 | 1 | 437 | 1 | 451 | 3.18e-165 | 473 |
| MS.gene32238.t1 | AT3G14870 | 51.702 | 470 | 194 | 11 | 1 | 441 | 2 | 467 | 7.11e-159 | 458 |
| MS.gene32238.t1 | AT3G14870 | 51.702 | 470 | 194 | 11 | 1 | 441 | 5 | 470 | 7.78e-159 | 458 |
| MS.gene32238.t1 | AT3G14870 | 51.702 | 470 | 194 | 11 | 1 | 441 | 1 | 466 | 7.83e-159 | 457 |
| MS.gene32238.t1 | AT3G14870 | 51.702 | 470 | 194 | 11 | 1 | 441 | 1 | 466 | 7.83e-159 | 457 |
| MS.gene32238.t1 | AT3G14870 | 51.702 | 470 | 194 | 11 | 1 | 441 | 1 | 466 | 7.83e-159 | 457 |
| MS.gene32238.t1 | AT1G29300 | 41.365 | 469 | 226 | 9 | 1 | 437 | 1 | 452 | 1.21e-110 | 334 |
| MS.gene32238.t1 | AT2G45260 | 39.589 | 389 | 215 | 8 | 63 | 437 | 37 | 419 | 1.04e-86 | 271 |
| MS.gene32238.t1 | AT3G60680 | 34.715 | 386 | 229 | 10 | 64 | 437 | 120 | 494 | 9.98e-60 | 203 |
| MS.gene32238.t1 | AT2G30380 | 33.598 | 378 | 205 | 9 | 66 | 438 | 76 | 412 | 1.95e-49 | 174 |
| MS.gene32238.t1 | AT4G34080 | 36.397 | 272 | 160 | 5 | 63 | 324 | 13 | 281 | 1.12e-47 | 166 |
| MS.gene32238.t1 | AT5G58960 | 31.436 | 404 | 238 | 13 | 63 | 436 | 86 | 480 | 3.06e-46 | 167 |
| MS.gene32238.t1 | AT5G58960 | 31.436 | 404 | 238 | 13 | 63 | 436 | 86 | 480 | 3.06e-46 | 167 |
| MS.gene32238.t1 | AT5G58960 | 31.436 | 404 | 238 | 13 | 63 | 436 | 161 | 555 | 1.39e-45 | 167 |
| MS.gene32238.t1 | AT4G33320 | 33.784 | 296 | 172 | 7 | 45 | 329 | 5 | 287 | 5.70e-43 | 153 |
| MS.gene32238.t1 | AT2G32130 | 45.600 | 125 | 66 | 1 | 64 | 188 | 35 | 157 | 2.86e-25 | 101 |
| MS.gene32238.t1 | AT4G36100 | 41.935 | 93 | 49 | 2 | 63 | 152 | 13 | 103 | 5.20e-15 | 74.7 |
| MS.gene32238.t1 | AT1G12330 | 23.715 | 253 | 159 | 5 | 207 | 447 | 252 | 482 | 4.53e-11 | 65.1 |
Find 64 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAAGAAAATGTTGTTTAT+AGG | 0.198493 | 8.3:+48236385 | MS.gene32238:CDS |
| AAGATGGCAAAAGGTGATTT+TGG | 0.202616 | 8.3:-48236591 | None:intergenic |
| AAAGAATGATGCCTCCATTT+TGG | 0.219724 | 8.3:-48236646 | None:intergenic |
| GCTCTTCATCTTCTTCTTCA+TGG | 0.223159 | 8.3:-48235798 | None:intergenic |
| AATTGTTGCAGCCGAATTAA+AGG | 0.260563 | 8.3:+48236044 | MS.gene32238:CDS |
| TCATTGTGATTATCGAAATA+AGG | 0.260665 | 8.3:-48236477 | None:intergenic |
| CAAGCTGAAATATTTCAAAT+AGG | 0.264277 | 8.3:+48236789 | MS.gene32238:CDS |
| GTTCACTTCATTTGCTGAAA+TGG | 0.292950 | 8.3:+48236719 | MS.gene32238:CDS |
| AAAATGGAGGCATCATTCTT+TGG | 0.328174 | 8.3:+48236648 | MS.gene32238:CDS |
| GTTGCTTTCACTGTAGTTCC+AGG | 0.358020 | 8.3:+48236897 | MS.gene32238:CDS |
| GTTTCTTAAAGAGAAGTTAG+AGG | 0.364153 | 8.3:+48236149 | MS.gene32238:CDS |
| AAGCTGAAATATTTCAAATA+GGG | 0.377206 | 8.3:+48236790 | MS.gene32238:CDS |
| AGAATCGAAGTCGCTTCTTA+AGG | 0.377855 | 8.3:+48236113 | MS.gene32238:CDS |
| GAGACTAGTTCACTCCAAAA+TGG | 0.381698 | 8.3:+48236632 | MS.gene32238:CDS |
| TTATGACCGTGATGGAATTC+AGG | 0.383293 | 8.3:+48235921 | MS.gene32238:CDS |
| ACTCTTCAGCTCCTTTAATT+CGG | 0.393760 | 8.3:-48236055 | None:intergenic |
| CTTGATAATCTACACATCTC+AGG | 0.410680 | 8.3:+48236234 | MS.gene32238:CDS |
| TCGAAGCTTTGTGAAGTTGT+TGG | 0.425314 | 8.3:+48236308 | MS.gene32238:CDS |
| GAATTCCATCACGGTCATAA+GGG | 0.426429 | 8.3:-48235918 | None:intergenic |
| TGAATTCCATCACGGTCATA+AGG | 0.426822 | 8.3:-48235919 | None:intergenic |
| ATAATAACCCATAAAATTGT+GGG | 0.445312 | 8.3:+48236081 | MS.gene32238:CDS |
| CATTGTGATTATCGAAATAA+GGG | 0.448793 | 8.3:-48236476 | None:intergenic |
| CTGAAATGGCTAAGAGGGTA+TGG | 0.458646 | 8.3:+48236733 | MS.gene32238:CDS |
| TATAATAACCCATAAAATTG+TGG | 0.465583 | 8.3:+48236080 | MS.gene32238:CDS |
| GTTTATGAAATGAGATCTGC+TGG | 0.469447 | 8.3:+48236330 | MS.gene32238:CDS |
| GAGGTTCAATGAGTTAAAAT+CGG | 0.474076 | 8.3:+48236539 | MS.gene32238:CDS |
| ACTGGAGTTGCACAAGTTGA+TGG | 0.474543 | 8.3:+48235742 | MS.gene32238:CDS |
| GTGAACAAGTTGTTGTCATC+GGG | 0.477261 | 8.3:-48236702 | None:intergenic |
| TGAAATGAGATCTGCTGGTT+GGG | 0.479878 | 8.3:+48236335 | MS.gene32238:CDS |
| CATTTGCTGAAATGGCTAAG+AGG | 0.480109 | 8.3:+48236727 | MS.gene32238:CDS |
| TAGCTGAGTTAAAGCAATGT+TGG | 0.501226 | 8.3:+48235980 | MS.gene32238:CDS |
| TGCTGATAAATTAATAGTCT+CGG | 0.502363 | 8.3:+48235945 | MS.gene32238:CDS |
| ACCCAACAAAAGATGGCAAA+AGG | 0.514310 | 8.3:-48236600 | None:intergenic |
| ACAATTGCTCCCTCCGGTGA+AGG | 0.525485 | 8.3:-48236027 | None:intergenic |
| GCTGCAACAATTGCTCCCTC+CGG | 0.528419 | 8.3:-48236033 | None:intergenic |
| GACATGAAACAAAGGAATGT+TGG | 0.529644 | 8.3:+48236672 | MS.gene32238:CDS |
| ATTTGAAATATTTCAGCTTG+AGG | 0.530973 | 8.3:-48236786 | None:intergenic |
| ATTTGCTGAAATGGCTAAGA+GGG | 0.540204 | 8.3:+48236728 | MS.gene32238:CDS |
| GAAATATTTCAAATAGGGAA+AGG | 0.542615 | 8.3:+48236795 | MS.gene32238:CDS |
| AGTGAACAAGTTGTTGTCAT+CGG | 0.555601 | 8.3:-48236703 | None:intergenic |
| AACAGAACAAGTTAATTGAA+AGG | 0.567554 | 8.3:+48236181 | MS.gene32238:CDS |
| GTATTTCACCCAACAAAAGA+TGG | 0.568758 | 8.3:-48236607 | None:intergenic |
| CTTCATGTAAAATCAATGAC+TGG | 0.569128 | 8.3:+48235724 | MS.gene32238:CDS |
| AGAGAAGATATAAAATGTGT+AGG | 0.571896 | 8.3:-48236264 | None:intergenic |
| ATGAAATGAGATCTGCTGGT+TGG | 0.574092 | 8.3:+48236334 | MS.gene32238:CDS |
| GTTAAAATCGGTGAATGCAA+AGG | 0.583587 | 8.3:+48236551 | MS.gene32238:CDS |
| ACATTGCTTTAACTCAGCTA+AGG | 0.585709 | 8.3:-48235977 | None:intergenic |
| TAGATTCTCTGATGTATACA+TGG | 0.592423 | 8.3:+48236821 | MS.gene32238:CDS |
| TATATCTTCTCTTCGCCACA+CGG | 0.595428 | 8.3:+48236275 | MS.gene32238:CDS |
| TTGATAATCTACACATCTCA+GGG | 0.598936 | 8.3:+48236235 | MS.gene32238:CDS |
| TCTTAAAGAGAAGTTAGAGG+AGG | 0.599840 | 8.3:+48236152 | MS.gene32238:CDS |
| AATTCCATCACGGTCATAAG+GGG | 0.601774 | 8.3:-48235917 | None:intergenic |
| CGAGCTAGTTTACTCTTGTG+TGG | 0.604460 | 8.3:-48235685 | None:intergenic |
| GAAAGGAGGTTAAATCAAAG+TGG | 0.604775 | 8.3:+48236198 | MS.gene32238:CDS |
| AGAACAAGTTAATTGAAAGG+AGG | 0.617633 | 8.3:+48236184 | MS.gene32238:CDS |
| GAATCCCCTTATGACCGTGA+TGG | 0.621817 | 8.3:+48235913 | MS.gene32238:CDS |
| ATAACTGTGAGAGGTAAACT+TGG | 0.648658 | 8.3:-48236950 | None:intergenic |
| TAATAACCCATAAAATTGTG+GGG | 0.649171 | 8.3:+48236082 | MS.gene32238:CDS |
| TCTTTGGTGACATGAAACAA+AGG | 0.654420 | 8.3:+48236664 | MS.gene32238:CDS |
| TTCGAATTGATTTAACCGTG+TGG | 0.660124 | 8.3:-48236290 | None:intergenic |
| TGTGATTATCGAAATAAGGG+AGG | 0.664917 | 8.3:-48236473 | None:intergenic |
| CAGCATCCTGAATTCCATCA+CGG | 0.672142 | 8.3:-48235927 | None:intergenic |
| ACTAGTTCACTCCAAAATGG+AGG | 0.674833 | 8.3:+48236635 | MS.gene32238:CDS |
| GTGGCTGTGATAACTGTGAG+AGG | 0.701707 | 8.3:-48236959 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAGAAAATGTTGTTTAT+AGG | + | chr8.3:48236385-48236404 | MS.gene32238:CDS | 15.0% |
| !! | AAGCTGAAATATTTCAAATA+GGG | + | chr8.3:48236790-48236809 | MS.gene32238:CDS | 20.0% |
| !! | ATAATAACCCATAAAATTGT+GGG | + | chr8.3:48236081-48236100 | MS.gene32238:CDS | 20.0% |
| !! | TATAATAACCCATAAAATTG+TGG | + | chr8.3:48236080-48236099 | MS.gene32238:CDS | 20.0% |
| !!! | AACAAAACACAATTTTTCTT+TGG | + | chr8.3:48236516-48236535 | MS.gene32238:CDS | 20.0% |
| !!! | AATTGTGTTTTGTTTTTATC+AGG | - | chr8.3:48236510-48236529 | None:intergenic | 20.0% |
| !!! | ACAAAACACAATTTTTCTTT+GGG | + | chr8.3:48236517-48236536 | MS.gene32238:CDS | 20.0% |
| ! | AACAGAACAAGTTAATTGAA+AGG | + | chr8.3:48236181-48236200 | MS.gene32238:CDS | 25.0% |
| ! | AGAGAAGATATAAAATGTGT+AGG | - | chr8.3:48236267-48236286 | None:intergenic | 25.0% |
| ! | CAAGCTGAAATATTTCAAAT+AGG | + | chr8.3:48236789-48236808 | MS.gene32238:CDS | 25.0% |
| ! | CATTGTGATTATCGAAATAA+GGG | - | chr8.3:48236479-48236498 | None:intergenic | 25.0% |
| ! | GAAATATTTCAAATAGGGAA+AGG | + | chr8.3:48236795-48236814 | MS.gene32238:CDS | 25.0% |
| ! | TAATAACCCATAAAATTGTG+GGG | + | chr8.3:48236082-48236101 | MS.gene32238:CDS | 25.0% |
| ! | TCATTGTGATTATCGAAATA+AGG | - | chr8.3:48236480-48236499 | None:intergenic | 25.0% |
| ! | TGCTGATAAATTAATAGTCT+CGG | + | chr8.3:48235945-48235964 | MS.gene32238:CDS | 25.0% |
| !! | ATTTGAAATATTTCAGCTTG+AGG | - | chr8.3:48236789-48236808 | None:intergenic | 25.0% |
| AGAACAAGTTAATTGAAAGG+AGG | + | chr8.3:48236184-48236203 | MS.gene32238:CDS | 30.0% | |
| CTTCATGTAAAATCAATGAC+TGG | + | chr8.3:48235724-48235743 | MS.gene32238:CDS | 30.0% | |
| GAGGTTCAATGAGTTAAAAT+CGG | + | chr8.3:48236539-48236558 | MS.gene32238:CDS | 30.0% | |
| GTTTCTTAAAGAGAAGTTAG+AGG | + | chr8.3:48236149-48236168 | MS.gene32238:CDS | 30.0% | |
| TAGATTCTCTGATGTATACA+TGG | + | chr8.3:48236821-48236840 | MS.gene32238:CDS | 30.0% | |
| TGAAGAGCTTAAGAAAAAAG+TGG | + | chr8.3:48235813-48235832 | MS.gene32238:CDS | 30.0% | |
| ! | AAACACAATTTTTCTTTGGG+AGG | + | chr8.3:48236520-48236539 | MS.gene32238:CDS | 30.0% |
| ! | GTTTTACCAATCTTAAAACC+TGG | - | chr8.3:48236918-48236937 | None:intergenic | 30.0% |
| ! | TTGATAATCTACACATCTCA+GGG | + | chr8.3:48236235-48236254 | MS.gene32238:CDS | 30.0% |
| !! | AATTGAGTCTTTTGTTTGCA+GGG | + | chr8.3:48236431-48236450 | MS.gene32238:CDS | 30.0% |
| !! | ATTCAATTTTGATCCTTCAC+CGG | + | chr8.3:48236014-48236033 | MS.gene32238:CDS | 30.0% |
| AATTGTTGCAGCCGAATTAA+AGG | + | chr8.3:48236044-48236063 | MS.gene32238:CDS | 35.0% | |
| ACATTGCTTTAACTCAGCTA+AGG | - | chr8.3:48235980-48235999 | None:intergenic | 35.0% | |
| ACTCTTCAGCTCCTTTAATT+CGG | - | chr8.3:48236058-48236077 | None:intergenic | 35.0% | |
| AGTGAACAAGTTGTTGTCAT+CGG | - | chr8.3:48236706-48236725 | None:intergenic | 35.0% | |
| ATAACTGTGAGAGGTAAACT+TGG | - | chr8.3:48236953-48236972 | None:intergenic | 35.0% | |
| GAAAGGAGGTTAAATCAAAG+TGG | + | chr8.3:48236198-48236217 | MS.gene32238:CDS | 35.0% | |
| GACATGAAACAAAGGAATGT+TGG | + | chr8.3:48236672-48236691 | MS.gene32238:CDS | 35.0% | |
| GTATTTCACCCAACAAAAGA+TGG | - | chr8.3:48236610-48236629 | None:intergenic | 35.0% | |
| GTTAAAATCGGTGAATGCAA+AGG | + | chr8.3:48236551-48236570 | MS.gene32238:CDS | 35.0% | |
| GTTTATGAAATGAGATCTGC+TGG | + | chr8.3:48236330-48236349 | MS.gene32238:CDS | 35.0% | |
| TAGCTGAGTTAAAGCAATGT+TGG | + | chr8.3:48235980-48235999 | MS.gene32238:CDS | 35.0% | |
| TCTTAAAGAGAAGTTAGAGG+AGG | + | chr8.3:48236152-48236171 | MS.gene32238:CDS | 35.0% | |
| TGTGATTATCGAAATAAGGG+AGG | - | chr8.3:48236476-48236495 | None:intergenic | 35.0% | |
| ! | AAAGAATGATGCCTCCATTT+TGG | - | chr8.3:48236649-48236668 | None:intergenic | 35.0% |
| ! | AAGATGGCAAAAGGTGATTT+TGG | - | chr8.3:48236594-48236613 | None:intergenic | 35.0% |
| ! | ACCTTTTGCCATCTTTTGTT+GGG | + | chr8.3:48236599-48236618 | MS.gene32238:CDS | 35.0% |
| ! | ACTTCTTCCCCACAATTTTA+TGG | - | chr8.3:48236092-48236111 | None:intergenic | 35.0% |
| ! | ATTTGCTGAAATGGCTAAGA+GGG | + | chr8.3:48236728-48236747 | MS.gene32238:CDS | 35.0% |
| ! | CTTCTTCCCCACAATTTTAT+GGG | - | chr8.3:48236091-48236110 | None:intergenic | 35.0% |
| ! | CTTGATAATCTACACATCTC+AGG | + | chr8.3:48236234-48236253 | MS.gene32238:CDS | 35.0% |
| ! | GTTCACTTCATTTGCTGAAA+TGG | + | chr8.3:48236719-48236738 | MS.gene32238:CDS | 35.0% |
| ! | TCTTTGGTGACATGAAACAA+AGG | + | chr8.3:48236664-48236683 | MS.gene32238:CDS | 35.0% |
| ! | TTCGAATTGATTTAACCGTG+TGG | - | chr8.3:48236293-48236312 | None:intergenic | 35.0% |
| ! | TTTCTTTTCACTTGAGCTTG+TGG | - | chr8.3:48236981-48237000 | None:intergenic | 35.0% |
| !! | AAAATGGAGGCATCATTCTT+TGG | + | chr8.3:48236648-48236667 | MS.gene32238:CDS | 35.0% |
| !! | CAATTGAGTCTTTTGTTTGC+AGG | + | chr8.3:48236430-48236449 | MS.gene32238:CDS | 35.0% |
| !!! | GTAGTTCCAGGTTTTAAGAT+TGG | + | chr8.3:48236909-48236928 | MS.gene32238:CDS | 35.0% |
| AATTCCATCACGGTCATAAG+GGG | - | chr8.3:48235920-48235939 | None:intergenic | 40.0% | |
| ACCCAACAAAAGATGGCAAA+AGG | - | chr8.3:48236603-48236622 | None:intergenic | 40.0% | |
| ACTAGTTCACTCCAAAATGG+AGG | + | chr8.3:48236635-48236654 | MS.gene32238:CDS | 40.0% | |
| AGAATCGAAGTCGCTTCTTA+AGG | + | chr8.3:48236113-48236132 | MS.gene32238:CDS | 40.0% | |
| ATGAAATGAGATCTGCTGGT+TGG | + | chr8.3:48236334-48236353 | MS.gene32238:CDS | 40.0% | |
| GAATTCCATCACGGTCATAA+GGG | - | chr8.3:48235921-48235940 | None:intergenic | 40.0% | |
| GCTCTTCATCTTCTTCTTCA+TGG | - | chr8.3:48235801-48235820 | None:intergenic | 40.0% | |
| GTGAACAAGTTGTTGTCATC+GGG | - | chr8.3:48236705-48236724 | None:intergenic | 40.0% | |
| TATATCTTCTCTTCGCCACA+CGG | + | chr8.3:48236275-48236294 | MS.gene32238:CDS | 40.0% | |
| TGAATTCCATCACGGTCATA+AGG | - | chr8.3:48235922-48235941 | None:intergenic | 40.0% | |
| ! | CACCTTTTGCCATCTTTTGT+TGG | + | chr8.3:48236598-48236617 | MS.gene32238:CDS | 40.0% |
| ! | CATTTGCTGAAATGGCTAAG+AGG | + | chr8.3:48236727-48236746 | MS.gene32238:CDS | 40.0% |
| ! | GAGACTAGTTCACTCCAAAA+TGG | + | chr8.3:48236632-48236651 | MS.gene32238:CDS | 40.0% |
| ! | TCGAAGCTTTGTGAAGTTGT+TGG | + | chr8.3:48236308-48236327 | MS.gene32238:CDS | 40.0% |
| ! | TGAAATGAGATCTGCTGGTT+GGG | + | chr8.3:48236335-48236354 | MS.gene32238:CDS | 40.0% |
| ! | TTATGACCGTGATGGAATTC+AGG | + | chr8.3:48235921-48235940 | MS.gene32238:CDS | 40.0% |
| !! | AATTTTGATCCTTCACCGGA+GGG | + | chr8.3:48236018-48236037 | MS.gene32238:CDS | 40.0% |
| CAGCATCCTGAATTCCATCA+CGG | - | chr8.3:48235930-48235949 | None:intergenic | 45.0% | |
| CTGAAATGGCTAAGAGGGTA+TGG | + | chr8.3:48236733-48236752 | MS.gene32238:CDS | 45.0% | |
| ! | ACTGGAGTTGCACAAGTTGA+TGG | + | chr8.3:48235742-48235761 | MS.gene32238:CDS | 45.0% |
| ! | CGAGCTAGTTTACTCTTGTG+TGG | - | chr8.3:48235688-48235707 | None:intergenic | 45.0% |
| ! | GTTGCTTTCACTGTAGTTCC+AGG | + | chr8.3:48236897-48236916 | MS.gene32238:CDS | 45.0% |
| !! | CAATTTTGATCCTTCACCGG+AGG | + | chr8.3:48236017-48236036 | MS.gene32238:CDS | 45.0% |
| GAATCCCCTTATGACCGTGA+TGG | + | chr8.3:48235913-48235932 | MS.gene32238:CDS | 50.0% | |
| GTGGCTGTGATAACTGTGAG+AGG | - | chr8.3:48236962-48236981 | None:intergenic | 50.0% | |
| ACAATTGCTCCCTCCGGTGA+AGG | - | chr8.3:48236030-48236049 | None:intergenic | 55.0% | |
| GCTGCAACAATTGCTCCCTC+CGG | - | chr8.3:48236036-48236055 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 48235655 | 48237016 | 48235655 | ID=MS.gene32238 |
| chr8.3 | mRNA | 48235655 | 48237016 | 48235655 | ID=MS.gene32238.t1;Parent=MS.gene32238 |
| chr8.3 | exon | 48235655 | 48237016 | 48235655 | ID=MS.gene32238.t1.exon1;Parent=MS.gene32238.t1 |
| chr8.3 | CDS | 48235655 | 48237016 | 48235655 | ID=cds.MS.gene32238.t1;Parent=MS.gene32238.t1 |
| Gene Sequence |
| Protein sequence |
