Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059502.t1 | XP_003607898.1 | 97.8 | 180 | 4 | 0 | 2 | 181 | 3 | 182 | 1.30E-92 | 349 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059502.t1 | P42856 | 69.3 | 127 | 39 | 0 | 55 | 181 | 2 | 128 | 6.6e-48 | 191.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059502.t1 | Q2MGQ9 | 97.8 | 180 | 4 | 0 | 2 | 181 | 3 | 182 | 9.7e-93 | 349.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051525 | MS.gene059502 | 0.833562 | 4.97E-56 | -1.69E-46 |
| MS.gene052505 | MS.gene059502 | 0.801304 | 9.59E-49 | -1.69E-46 |
| MS.gene052982 | MS.gene059502 | 0.807224 | 5.61E-50 | -1.69E-46 |
| MS.gene053318 | MS.gene059502 | 0.811614 | 6.41E-51 | -1.69E-46 |
| MS.gene056877 | MS.gene059502 | 0.80812 | 3.62E-50 | -1.69E-46 |
| MS.gene058700 | MS.gene059502 | 0.820027 | 8.52E-53 | -1.69E-46 |
| MS.gene059498 | MS.gene059502 | 0.8208 | 5.66E-53 | -1.69E-46 |
| MS.gene059499 | MS.gene059502 | 0.989982 | 1.60E-180 | -1.69E-46 |
| MS.gene059501 | MS.gene059502 | 0.80688 | 6.63E-50 | -1.69E-46 |
| MS.gene059502 | MS.gene059504 | 0.864403 | 1.25E-64 | -1.69E-46 |
| MS.gene059502 | MS.gene065996 | 0.811652 | 6.29E-51 | -1.69E-46 |
| MS.gene059502 | MS.gene20025 | 0.801787 | 7.63E-49 | -1.69E-46 |
| MS.gene059502 | MS.gene27117 | 0.803398 | 3.55E-49 | -1.69E-46 |
| MS.gene059502 | MS.gene29833 | 0.821693 | 3.52E-53 | -1.69E-46 |
| MS.gene059502 | MS.gene43489 | 0.800883 | 1.17E-48 | -1.69E-46 |
| MS.gene059502 | MS.gene57947 | 0.807043 | 6.13E-50 | -1.69E-46 |
| MS.gene059502 | MS.gene88173 | 0.809204 | 2.12E-50 | -1.69E-46 |
| MS.gene059502 | MS.gene95706 | 0.821144 | 4.72E-53 | -1.69E-46 |
| MS.gene059502 | MS.gene96348 | 0.80075 | 1.24E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059502.t1 | MTR_4g084190 | 97.778 | 180 | 4 | 0 | 2 | 181 | 3 | 182 | 7.42e-131 | 364 |
| MS.gene059502.t1 | MTR_4g084190 | 93.617 | 188 | 4 | 1 | 2 | 181 | 3 | 190 | 1.02e-127 | 357 |
| MS.gene059502.t1 | MTR_4g084190 | 96.639 | 119 | 4 | 0 | 2 | 120 | 3 | 121 | 3.46e-80 | 234 |
| MS.gene059502.t1 | MTR_6g026810 | 64.964 | 137 | 48 | 0 | 45 | 181 | 17 | 153 | 4.04e-67 | 202 |
| MS.gene059502.t1 | MTR_7g088160 | 53.521 | 71 | 31 | 2 | 53 | 121 | 4 | 74 | 3.83e-17 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059502.t1 | AT1G31160 | 69.663 | 178 | 49 | 2 | 9 | 181 | 10 | 187 | 6.74e-75 | 223 |
| MS.gene059502.t1 | AT3G56490 | 65.926 | 135 | 44 | 1 | 47 | 181 | 15 | 147 | 8.36e-65 | 196 |
| MS.gene059502.t1 | AT1G31160 | 63.248 | 117 | 38 | 2 | 9 | 120 | 10 | 126 | 1.75e-31 | 111 |
Find 45 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAATCCATCTCTGAATTT+TGG | 0.116683 | 4.3:+27680426 | None:intergenic |
| TTCTTTCTCGGCTACTATTT+TGG | 0.146644 | 4.3:+27680125 | None:intergenic |
| CGGTTCCTTTCTCTCTTCTT+AGG | 0.195364 | 4.3:-27682150 | MS.gene059502:intron |
| TGCTAGACATGGGGAGATAC+TGG | 0.286551 | 4.3:-27680166 | MS.gene059502:CDS |
| TTTGTTGCGCTGGCGCTAAA+AGG | 0.344972 | 4.3:+27680949 | None:intergenic |
| AGCATTAACAGCAGCTGCTT+TGG | 0.346160 | 4.3:+27680909 | None:intergenic |
| ATTTGACAAGATCATAAATA+AGG | 0.353101 | 4.3:-27680538 | MS.gene059502:CDS |
| AATTACCTGCGACTTTGAAT+AGG | 0.381269 | 4.3:+27681975 | None:intergenic |
| ATCAGCGATACCTTCTTTCT+CGG | 0.398686 | 4.3:+27680113 | None:intergenic |
| ACAGGCTCCGGTTCATGTTC+TGG | 0.408262 | 4.3:-27680454 | MS.gene059502:CDS |
| TTGTTCATTGTTTGTTGCGC+TGG | 0.410590 | 4.3:+27680939 | None:intergenic |
| AGAGATGGATTAACAGAACT+TGG | 0.427247 | 4.3:-27680417 | MS.gene059502:CDS |
| TAGGTGGGAGACAGATGAAT+TGG | 0.451270 | 4.3:-27679921 | MS.gene059502:CDS |
| TTGCAGGAACTACTCACAAT+TGG | 0.452153 | 4.3:-27682057 | MS.gene059502:intron |
| TCTTCATATACAATGCTTGA+AGG | 0.456414 | 4.3:+27680510 | None:intergenic |
| GGAATGACCAGAACATGAAC+CGG | 0.476627 | 4.3:+27680447 | None:intergenic |
| GGACATCAGTCCACAGGCTC+CGG | 0.500682 | 4.3:-27680466 | MS.gene059502:CDS |
| CATTGTATATGAAGATGAAA+AGG | 0.504283 | 4.3:-27680502 | MS.gene059502:CDS |
| TTCTTCCTATTCAAAGTCGC+AGG | 0.517238 | 4.3:-27681980 | MS.gene059502:intron |
| CATCTGCACTTGCATGTCCT+AGG | 0.526980 | 4.3:-27679940 | MS.gene059502:CDS |
| CTTCATATACAATGCTTGAA+GGG | 0.529749 | 4.3:+27680511 | None:intergenic |
| GTCATTCCAAAATTCAGAGA+TGG | 0.530580 | 4.3:-27680432 | MS.gene059502:CDS |
| GCTGCTGTTAATGCTGATAG+TGG | 0.535440 | 4.3:-27680901 | MS.gene059502:CDS |
| CTGCACTTGCATGTCCTAGG+TGG | 0.538200 | 4.3:-27679937 | MS.gene059502:CDS |
| TCTAGCAACCATGGCAGCTA+CGG | 0.539151 | 4.3:-27682170 | None:intergenic |
| GTTTAATGTTGATACATTGT+CGG | 0.541470 | 4.3:+27680874 | None:intergenic |
| TGTTACCTAAGAAGAGAGAA+AGG | 0.545840 | 4.3:+27682145 | None:intergenic |
| AAAATAGTAGCCGAGAAAGA+AGG | 0.558191 | 4.3:-27680123 | MS.gene059502:CDS |
| GAGAAAGAAGGTATCGCTGA+TGG | 0.560682 | 4.3:-27680111 | MS.gene059502:CDS |
| GAAAGGAACCGTAGCTGCCA+TGG | 0.563604 | 4.3:+27682162 | None:intergenic |
| GCTAGACATGGGGAGATACT+GGG | 0.568863 | 4.3:-27680165 | MS.gene059502:CDS |
| AGTGCAGATGATACACACTT+TGG | 0.574867 | 4.3:+27679953 | None:intergenic |
| AGACAGATGAATTGGCCACC+TGG | 0.582532 | 4.3:-27679913 | MS.gene059502:CDS |
| GAGATGGATTAACAGAACTT+GGG | 0.585175 | 4.3:-27680416 | MS.gene059502:CDS |
| TTGCAGGCTGATGCTAGACA+TGG | 0.589421 | 4.3:-27680177 | MS.gene059502:intron |
| TGCACTTGCATGTCCTAGGT+GGG | 0.590386 | 4.3:-27679936 | MS.gene059502:CDS |
| GCAAGGATTGACATTCAACC+AGG | 0.602800 | 4.3:+27679895 | None:intergenic |
| GACTGATGTCCCGAAAAGCT+AGG | 0.605770 | 4.3:+27680478 | None:intergenic |
| TGCAGGCTGATGCTAGACAT+GGG | 0.607182 | 4.3:-27680176 | MS.gene059502:intron |
| AATTCATCTGTCTCCCACCT+AGG | 0.607223 | 4.3:+27679923 | None:intergenic |
| AGAACATGAACCGGAGCCTG+TGG | 0.626518 | 4.3:+27680456 | None:intergenic |
| TGGATTAACAGAACTTGGGA+AGG | 0.640825 | 4.3:-27680412 | MS.gene059502:intron |
| TTTCGTGTTGTCATCAACAG+TGG | 0.675033 | 4.3:-27680087 | MS.gene059502:CDS |
| GCAGGCTGATGCTAGACATG+GGG | 0.678497 | 4.3:-27680175 | MS.gene059502:intron |
| AGGATTGACATTCAACCAGG+TGG | 0.710391 | 4.3:+27679898 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAATAAAATAGAATTATT+GGG | + | chr4.3:27681503-27681522 | None:intergenic | 10.0% |
| !! | TACACTAATTTATTATATAA+GGG | - | chr4.3:27681737-27681756 | MS.gene059502:intron | 10.0% |
| !! | ACACTAATTTATTATATAAG+GGG | - | chr4.3:27681738-27681757 | MS.gene059502:intron | 15.0% |
| !! | GAAGAATAAAATAGAATTAT+TGG | + | chr4.3:27681504-27681523 | None:intergenic | 15.0% |
| !! | GTACACTAATTTATTATATA+AGG | - | chr4.3:27681736-27681755 | MS.gene059502:intron | 15.0% |
| !! | GTGAATAAAATAATAAAAGT+TGG | - | chr4.3:27680182-27680201 | MS.gene059502:intron | 15.0% |
| !! | TATACTGAAATTTATTGTTA+TGG | + | chr4.3:27680397-27680416 | None:intergenic | 15.0% |
| !! | AAGAAGACAAAAAAGATAAT+GGG | + | chr4.3:27681023-27681042 | None:intergenic | 20.0% |
| !! | ATTTGACAAGATCATAAATA+AGG | - | chr4.3:27681531-27681550 | MS.gene059502:intron | 20.0% |
| !!! | AGATTTAAAGTTTAAATGCT+CGG | - | chr4.3:27681329-27681348 | MS.gene059502:intron | 20.0% |
| !!! | CTTCAAGTTAAAATAAGTTA+TGG | - | chr4.3:27680451-27680470 | MS.gene059502:CDS | 20.0% |
| !!! | TGAATTTTTTATGATCTGTA+AGG | - | chr4.3:27680131-27680150 | MS.gene059502:CDS | 20.0% |
| ! | AATAAGAAAAACGAGATTAG+TGG | + | chr4.3:27682088-27682107 | None:intergenic | 25.0% |
| ! | ATAAGAAAAACGAGATTAGT+GGG | + | chr4.3:27682087-27682106 | None:intergenic | 25.0% |
| ! | ATAAGATACCATACCATTAT+TGG | + | chr4.3:27682055-27682074 | None:intergenic | 25.0% |
| ! | CATTGTATATGAAGATGAAA+AGG | - | chr4.3:27681567-27681586 | MS.gene059502:intron | 25.0% |
| ! | GAAGAAGACAAAAAAGATAA+TGG | + | chr4.3:27681024-27681043 | None:intergenic | 25.0% |
| ! | GATTAGAAAAAAGAACATAC+AGG | + | chr4.3:27682016-27682035 | None:intergenic | 25.0% |
| ! | GTTTAATGTTGATACATTGT+CGG | + | chr4.3:27681198-27681217 | None:intergenic | 25.0% |
| ! | TATAACTTCAAAACAGATTC+TGG | + | chr4.3:27680988-27681007 | None:intergenic | 25.0% |
| ! | TCTATATGTACATTAACTCA+AGG | - | chr4.3:27681693-27681712 | MS.gene059502:intron | 25.0% |
| ! | TTAGTTCAAATGCGAAAAAT+TGG | - | chr4.3:27680603-27680622 | MS.gene059502:intron | 25.0% |
| !! | AAAGTAGCTAGAATTGATTT+CGG | + | chr4.3:27680536-27680555 | None:intergenic | 25.0% |
| !! | AATTTGTGTTGTTAATGAGA+TGG | - | chr4.3:27680157-27680176 | MS.gene059502:CDS | 25.0% |
| !! | ACAAAAAAGATCCTTTTCTA+AGG | + | chr4.3:27680882-27680901 | None:intergenic | 25.0% |
| !! | GTTGAACTTGAACAAATTTT+TGG | + | chr4.3:27680792-27680811 | None:intergenic | 25.0% |
| !!! | CTATTTCTAATAATGTTGCT+TGG | - | chr4.3:27680848-27680867 | MS.gene059502:intron | 25.0% |
| !!! | GTTAGCTTTGAGTTATTAAT+GGG | - | chr4.3:27681812-27681831 | MS.gene059502:intron | 25.0% |
| !!! | TGGATAACCTTGTTTTTTAT+TGG | - | chr4.3:27680650-27680669 | MS.gene059502:intron | 25.0% |
| !!! | TGTTAGCTTTGAGTTATTAA+TGG | - | chr4.3:27681811-27681830 | MS.gene059502:intron | 25.0% |
| !!! | TTTATTGACTTAGTGTGAAT+TGG | - | chr4.3:27681062-27681081 | MS.gene059502:intron | 25.0% |
| !!! | TTTTTTGTCTTCTTCATGTT+TGG | - | chr4.3:27681029-27681048 | MS.gene059502:intron | 25.0% |
| AAAGAGAGAACCAATCTATT+TGG | - | chr4.3:27681400-27681419 | MS.gene059502:intron | 30.0% | |
| AACAAGGTAACAACTTACTT+TGG | + | chr4.3:27680717-27680736 | None:intergenic | 30.0% | |
| AACTTACTTTGGACAAACAA+AGG | + | chr4.3:27680706-27680725 | None:intergenic | 30.0% | |
| ACAATTTCCATTGCCAATAA+TGG | - | chr4.3:27682039-27682058 | MS.gene059502:CDS | 30.0% | |
| AGGTTATCCAAACATGAATT+AGG | + | chr4.3:27680640-27680659 | None:intergenic | 30.0% | |
| CAAAAAAAAACTGCATTTGC+AGG | - | chr4.3:27681876-27681895 | MS.gene059502:intron | 30.0% | |
| CTTCATATACAATGCTTGAA+GGG | + | chr4.3:27681561-27681580 | None:intergenic | 30.0% | |
| GTTTATGTTTGTGTGCATTT+AGG | - | chr4.3:27680357-27680376 | MS.gene059502:intron | 30.0% | |
| TCTTCATATACAATGCTTGA+AGG | + | chr4.3:27681562-27681581 | None:intergenic | 30.0% | |
| TTCCTTACATAGTAGTAACA+GGG | - | chr4.3:27681839-27681858 | MS.gene059502:intron | 30.0% | |
| TTGCATCATGTCTAATAACA+AGG | + | chr4.3:27680733-27680752 | None:intergenic | 30.0% | |
| TTTCCTTACATAGTAGTAAC+AGG | - | chr4.3:27681838-27681857 | MS.gene059502:intron | 30.0% | |
| TTTCTACCTTCCAAATAGAT+TGG | + | chr4.3:27681413-27681432 | None:intergenic | 30.0% | |
| ! | GTTAATCCATCTCTGAATTT+TGG | + | chr4.3:27681646-27681665 | None:intergenic | 30.0% |
| ! | TCTAATAATGTTGCTTGGAT+CGG | - | chr4.3:27680853-27680872 | MS.gene059502:intron | 30.0% |
| ! | TCTTGCTTTGTATAATTTGC+AGG | - | chr4.3:27679996-27680015 | MS.gene059502:intron | 30.0% |
| AAAAAAGAACATACAGGCAC+TGG | + | chr4.3:27682010-27682029 | None:intergenic | 35.0% | |
| AAAATAGTAGCCGAGAAAGA+AGG | - | chr4.3:27681946-27681965 | MS.gene059502:intron | 35.0% | |
| AAACATTCGACCAATGTTGA+AGG | - | chr4.3:27681440-27681459 | MS.gene059502:intron | 35.0% | |
| AATTACCTGCGACTTTGAAT+AGG | + | chr4.3:27680097-27680116 | None:intergenic | 35.0% | |
| AGAGAACCAATCTATTTGGA+AGG | - | chr4.3:27681404-27681423 | MS.gene059502:intron | 35.0% | |
| ATTAGACATGATGCAACTAC+TGG | - | chr4.3:27680737-27680756 | MS.gene059502:intron | 35.0% | |
| ATTGCATTTCAGTGCATGTT+TGG | - | chr4.3:27680254-27680273 | MS.gene059502:intron | 35.0% | |
| CAGAAAGATAAGCATTCAGT+GGG | + | chr4.3:27681220-27681239 | None:intergenic | 35.0% | |
| GTCATTCCAAAATTCAGAGA+TGG | - | chr4.3:27681637-27681656 | MS.gene059502:intron | 35.0% | |
| TAACAAGCTCTACCAAAACT+TGG | + | chr4.3:27680961-27680980 | None:intergenic | 35.0% | |
| TACCATACCATTATTGGCAA+TGG | + | chr4.3:27682049-27682068 | None:intergenic | 35.0% | |
| TCAGAAAGATAAGCATTCAG+TGG | + | chr4.3:27681221-27681240 | None:intergenic | 35.0% | |
| TCAGCTGCCAATAAAAAACA+AGG | + | chr4.3:27680660-27680679 | None:intergenic | 35.0% | |
| TCTGCAACCTAATTCATGTT+TGG | - | chr4.3:27680630-27680649 | MS.gene059502:intron | 35.0% | |
| TGTTACCTAAGAAGAGAGAA+AGG | + | chr4.3:27679927-27679946 | None:intergenic | 35.0% | |
| TTCCATTGCCAATAATGGTA+TGG | - | chr4.3:27682044-27682063 | MS.gene059502:CDS | 35.0% | |
| ! | GCATTTTGCTTACTTGTTTC+AGG | - | chr4.3:27681094-27681113 | MS.gene059502:intron | 35.0% |
| ! | TAGTGTGAATTGGTGTTTGT+TGG | - | chr4.3:27681072-27681091 | MS.gene059502:intron | 35.0% |
| ! | TCAACATTGGTCGAATGTTT+TGG | + | chr4.3:27681440-27681459 | None:intergenic | 35.0% |
| ! | TTCTTTCTCGGCTACTATTT+TGG | + | chr4.3:27681947-27681966 | None:intergenic | 35.0% |
| !! | AGAGATGGATTAACAGAACT+TGG | - | chr4.3:27681652-27681671 | MS.gene059502:intron | 35.0% |
| !! | ATGAAAAGGTCCTAGCTTTT+CGG | - | chr4.3:27681581-27681600 | MS.gene059502:intron | 35.0% |
| !! | CACATTTCTGAGACTATGTT+TGG | + | chr4.3:27680569-27680588 | None:intergenic | 35.0% |
| !! | CGGAGGTGTAAAATTGATTT+TGG | + | chr4.3:27680516-27680535 | None:intergenic | 35.0% |
| !! | CTCGTTTTTCTTATTCTGCT+AGG | - | chr4.3:27682093-27682112 | MS.gene059502:intron | 35.0% |
| !! | GAGATGGATTAACAGAACTT+GGG | - | chr4.3:27681653-27681672 | MS.gene059502:intron | 35.0% |
| AGTGCAGATGATACACACTT+TGG | + | chr4.3:27682119-27682138 | None:intergenic | 40.0% | |
| ATCAGCGATACCTTCTTTCT+CGG | + | chr4.3:27681959-27681978 | None:intergenic | 40.0% | |
| CACAATCAAACAACAGCACA+TGG | + | chr4.3:27680814-27680833 | None:intergenic | 40.0% | |
| CTCCCTGTTACTACTATGTA+AGG | + | chr4.3:27681844-27681863 | None:intergenic | 40.0% | |
| CTGTGTTAAAGAGAGAGAGA+GGG | + | chr4.3:27681475-27681494 | None:intergenic | 40.0% | |
| TCTGTGTTAAAGAGAGAGAG+AGG | + | chr4.3:27681476-27681495 | None:intergenic | 40.0% | |
| TGGATCGGATACCTTAGAAA+AGG | - | chr4.3:27680868-27680887 | MS.gene059502:intron | 40.0% | |
| TGGATTAACAGAACTTGGGA+AGG | - | chr4.3:27681657-27681676 | MS.gene059502:intron | 40.0% | |
| TTCTTCCTATTCAAAGTCGC+AGG | - | chr4.3:27680089-27680108 | MS.gene059502:CDS | 40.0% | |
| TTGCAGGAACTACTCACAAT+TGG | - | chr4.3:27680012-27680031 | MS.gene059502:intron | 40.0% | |
| TTTCGTGTTGTCATCAACAG+TGG | - | chr4.3:27681982-27682001 | MS.gene059502:CDS | 40.0% | |
| ! | GTAGCTAGAATTGATTTCGG+AGG | + | chr4.3:27680533-27680552 | None:intergenic | 40.0% |
| ! | TTGTTCATTGTTTGTTGCGC+TGG | + | chr4.3:27681133-27681152 | None:intergenic | 40.0% |
| ! | TTTTGTGTGTCTGCACTGTT+AGG | - | chr4.3:27680896-27680915 | MS.gene059502:CDS | 40.0% |
| !! | TGAAAAGGTCCTAGCTTTTC+GGG | - | chr4.3:27681582-27681601 | MS.gene059502:intron | 40.0% |
| !! | TTTCTCGGCTACTATTTTGG+CGG | + | chr4.3:27681944-27681963 | None:intergenic | 40.0% |
| !!! | TCAGTGCATGTTTGGTTTTG+AGG | - | chr4.3:27680262-27680281 | MS.gene059502:intron | 40.0% |
| AATTCATCTGTCTCCCACCT+AGG | + | chr4.3:27682149-27682168 | None:intergenic | 45.0% | |
| AGCATTAACAGCAGCTGCTT+TGG | + | chr4.3:27681163-27681182 | None:intergenic | 45.0% | |
| CGGTTCCTTTCTCTCTTCTT+AGG | - | chr4.3:27679919-27679938 | MS.gene059502:CDS | 45.0% | |
| GCTGCTGTTAATGCTGATAG+TGG | - | chr4.3:27681168-27681187 | MS.gene059502:intron | 45.0% | |
| GGAATGACCAGAACATGAAC+CGG | + | chr4.3:27681625-27681644 | None:intergenic | 45.0% | |
| TAGGTGGGAGACAGATGAAT+TGG | - | chr4.3:27682148-27682167 | MS.gene059502:intron | 45.0% | |
| ! | TGTCATCCAGCACCAAGTTT+TGG | - | chr4.3:27680946-27680965 | MS.gene059502:CDS | 45.0% |
| !! | GAGAAAGAAGGTATCGCTGA+TGG | - | chr4.3:27681958-27681977 | MS.gene059502:intron | 45.0% |
| AGACAGATGAATTGGCCACC+TGG | - | chr4.3:27682156-27682175 | MS.gene059502:CDS | 50.0% | |
| CATCTGCACTTGCATGTCCT+AGG | - | chr4.3:27682129-27682148 | MS.gene059502:intron | 50.0% | |
| GACTGATGTCCCGAAAAGCT+AGG | + | chr4.3:27681594-27681613 | None:intergenic | 50.0% | |
| GCACTTCAGGCCTTCAACAT+TGG | + | chr4.3:27681453-27681472 | None:intergenic | 50.0% | |
| GCTAGACATGGGGAGATACT+GGG | - | chr4.3:27681904-27681923 | MS.gene059502:intron | 50.0% | |
| TGCACTTGCATGTCCTAGGT+GGG | - | chr4.3:27682133-27682152 | MS.gene059502:intron | 50.0% | |
| TGCAGGCTGATGCTAGACAT+GGG | - | chr4.3:27681893-27681912 | MS.gene059502:intron | 50.0% | |
| TGCTAGACATGGGGAGATAC+TGG | - | chr4.3:27681903-27681922 | MS.gene059502:intron | 50.0% | |
| TTGCAGGCTGATGCTAGACA+TGG | - | chr4.3:27681892-27681911 | MS.gene059502:intron | 50.0% | |
| ! | TTTGTTGCGCTGGCGCTAAA+AGG | + | chr4.3:27681123-27681142 | None:intergenic | 50.0% |
| !! | GCTCTACCAAAACTTGGTGC+TGG | + | chr4.3:27680955-27680974 | None:intergenic | 50.0% |
| !! | TTTTCGGGACATCAGTCCAC+AGG | - | chr4.3:27681597-27681616 | MS.gene059502:intron | 50.0% |
| ACAGGCTCCGGTTCATGTTC+TGG | - | chr4.3:27681615-27681634 | MS.gene059502:intron | 55.0% | |
| AGAACATGAACCGGAGCCTG+TGG | + | chr4.3:27681616-27681635 | None:intergenic | 55.0% | |
| CTGCACTTGCATGTCCTAGG+TGG | - | chr4.3:27682132-27682151 | MS.gene059502:intron | 55.0% | |
| GCAGGCTGATGCTAGACATG+GGG | - | chr4.3:27681894-27681913 | MS.gene059502:intron | 55.0% | |
| !! | AGAGAGAGAGAGGGCACTTC+AGG | + | chr4.3:27681466-27681485 | None:intergenic | 55.0% |
| GGACATCAGTCCACAGGCTC+CGG | - | chr4.3:27681603-27681622 | MS.gene059502:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 27679909 | 27682182 | 27679909 | ID=MS.gene059502 |
| chr4.3 | mRNA | 27679909 | 27682182 | 27679909 | ID=MS.gene059502.t1;Parent=MS.gene059502 |
| chr4.3 | exon | 27682151 | 27682182 | 27682151 | ID=MS.gene059502.t1.exon1;Parent=MS.gene059502.t1 |
| chr4.3 | CDS | 27682151 | 27682182 | 27682151 | ID=cds.MS.gene059502.t1;Parent=MS.gene059502.t1 |
| chr4.3 | exon | 27681981 | 27682073 | 27681981 | ID=MS.gene059502.t1.exon2;Parent=MS.gene059502.t1 |
| chr4.3 | CDS | 27681981 | 27682073 | 27681981 | ID=cds.MS.gene059502.t1;Parent=MS.gene059502.t1 |
| chr4.3 | exon | 27680889 | 27680975 | 27680889 | ID=MS.gene059502.t1.exon3;Parent=MS.gene059502.t1 |
| chr4.3 | CDS | 27680889 | 27680975 | 27680889 | ID=cds.MS.gene059502.t1;Parent=MS.gene059502.t1 |
| chr4.3 | exon | 27680413 | 27680560 | 27680413 | ID=MS.gene059502.t1.exon4;Parent=MS.gene059502.t1 |
| chr4.3 | CDS | 27680413 | 27680560 | 27680413 | ID=cds.MS.gene059502.t1;Parent=MS.gene059502.t1 |
| chr4.3 | exon | 27680076 | 27680193 | 27680076 | ID=MS.gene059502.t1.exon5;Parent=MS.gene059502.t1 |
| chr4.3 | CDS | 27680076 | 27680193 | 27680076 | ID=cds.MS.gene059502.t1;Parent=MS.gene059502.t1 |
| chr4.3 | exon | 27679909 | 27679976 | 27679909 | ID=MS.gene059502.t1.exon6;Parent=MS.gene059502.t1 |
| chr4.3 | CDS | 27679909 | 27679976 | 27679909 | ID=cds.MS.gene059502.t1;Parent=MS.gene059502.t1 |
| Gene Sequence |
| Protein sequence |
