Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88173.t1 | XP_003606096.1 | 97.3 | 188 | 5 | 0 | 1 | 188 | 1 | 188 | 5.00E-90 | 340.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88173.t1 | Q96KR6 | 31.4 | 102 | 66 | 1 | 85 | 182 | 80 | 181 | 5.3e-08 | 59.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88173.t1 | G7JH97 | 97.3 | 188 | 5 | 0 | 1 | 188 | 1 | 188 | 3.6e-90 | 340.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene88173 | 0.817282 | 3.58E-52 | -1.69E-46 |
| MS.gene049170 | MS.gene88173 | 0.84314 | 1.68E-58 | -1.69E-46 |
| MS.gene049609 | MS.gene88173 | 0.821848 | 3.25E-53 | -1.69E-46 |
| MS.gene050133 | MS.gene88173 | -0.81815 | 2.28E-52 | -1.69E-46 |
| MS.gene050315 | MS.gene88173 | 0.879139 | 1.59E-69 | -1.69E-46 |
| MS.gene050397 | MS.gene88173 | 0.806634 | 7.48E-50 | -1.69E-46 |
| MS.gene050400 | MS.gene88173 | 0.822442 | 2.36E-53 | -1.69E-46 |
| MS.gene050426 | MS.gene88173 | -0.864185 | 1.46E-64 | -1.69E-46 |
| MS.gene050464 | MS.gene88173 | 0.830189 | 3.38E-55 | -1.69E-46 |
| MS.gene050529 | MS.gene88173 | 0.82921 | 5.85E-55 | -1.69E-46 |
| MS.gene050593 | MS.gene88173 | 0.845363 | 4.26E-59 | -1.69E-46 |
| MS.gene050670 | MS.gene88173 | 0.901397 | 2.79E-78 | -1.69E-46 |
| MS.gene050747 | MS.gene88173 | 0.807933 | 3.97E-50 | -1.69E-46 |
| MS.gene050812 | MS.gene88173 | 0.807931 | 3.97E-50 | -1.69E-46 |
| MS.gene05081 | MS.gene88173 | 0.82637 | 2.82E-54 | -1.69E-46 |
| MS.gene050950 | MS.gene88173 | 0.807426 | 5.08E-50 | -1.69E-46 |
| MS.gene05105 | MS.gene88173 | 0.858082 | 1.05E-62 | -1.69E-46 |
| MS.gene051387 | MS.gene88173 | 0.828041 | 1.12E-54 | -1.69E-46 |
| MS.gene051525 | MS.gene88173 | 0.898839 | 3.58E-77 | -1.69E-46 |
| MS.gene051552 | MS.gene88173 | -0.804251 | 2.36E-49 | -1.69E-46 |
| MS.gene051582 | MS.gene88173 | 0.851046 | 1.15E-60 | -1.69E-46 |
| MS.gene051838 | MS.gene88173 | 0.839854 | 1.24E-57 | -1.69E-46 |
| MS.gene052011 | MS.gene88173 | -0.883074 | 6.10E-71 | -1.69E-46 |
| MS.gene052134 | MS.gene88173 | 0.851103 | 1.10E-60 | -1.69E-46 |
| MS.gene052135 | MS.gene88173 | 0.835106 | 2.04E-56 | -1.69E-46 |
| MS.gene052188 | MS.gene88173 | 0.822386 | 2.44E-53 | -1.69E-46 |
| MS.gene052253 | MS.gene88173 | 0.826062 | 3.33E-54 | -1.69E-46 |
| MS.gene052310 | MS.gene88173 | 0.819957 | 8.84E-53 | -1.69E-46 |
| MS.gene052340 | MS.gene88173 | 0.809319 | 2.01E-50 | -1.69E-46 |
| MS.gene052346 | MS.gene88173 | 0.804406 | 2.19E-49 | -1.69E-46 |
| MS.gene052414 | MS.gene88173 | 0.809709 | 1.65E-50 | -1.69E-46 |
| MS.gene052421 | MS.gene88173 | 0.800376 | 1.48E-48 | -1.69E-46 |
| MS.gene052469 | MS.gene88173 | 0.865754 | 4.69E-65 | -1.69E-46 |
| MS.gene052481 | MS.gene88173 | 0.832094 | 1.15E-55 | -1.69E-46 |
| MS.gene052501 | MS.gene88173 | 0.833963 | 3.94E-56 | -1.69E-46 |
| MS.gene052505 | MS.gene88173 | 0.856798 | 2.52E-62 | -1.69E-46 |
| MS.gene052758 | MS.gene88173 | 0.805787 | 1.13E-49 | -1.69E-46 |
| MS.gene052982 | MS.gene88173 | 0.841393 | 4.88E-58 | -1.69E-46 |
| MS.gene053107 | MS.gene88173 | 0.808446 | 3.08E-50 | -1.69E-46 |
| MS.gene053169 | MS.gene88173 | 0.810619 | 1.05E-50 | -1.69E-46 |
| MS.gene053330 | MS.gene88173 | 0.864534 | 1.14E-64 | -1.69E-46 |
| MS.gene053579 | MS.gene88173 | 0.807914 | 4.00E-50 | -1.69E-46 |
| MS.gene054102 | MS.gene88173 | 0.80069 | 1.28E-48 | -1.69E-46 |
| MS.gene054107 | MS.gene88173 | 0.822778 | 1.97E-53 | -1.69E-46 |
| MS.gene054110 | MS.gene88173 | 0.801978 | 6.98E-49 | -1.69E-46 |
| MS.gene054183 | MS.gene88173 | 0.813475 | 2.51E-51 | -1.69E-46 |
| MS.gene054556 | MS.gene88173 | 0.816738 | 4.74E-52 | -1.69E-46 |
| MS.gene054719 | MS.gene88173 | 0.846385 | 2.24E-59 | -1.69E-46 |
| MS.gene054884 | MS.gene88173 | -0.850231 | 1.94E-60 | -1.69E-46 |
| MS.gene054927 | MS.gene88173 | 0.807151 | 5.81E-50 | -1.69E-46 |
| MS.gene055116 | MS.gene88173 | 0.841798 | 3.82E-58 | -1.69E-46 |
| MS.gene055369 | MS.gene88173 | 0.852305 | 5.04E-61 | -1.69E-46 |
| MS.gene055370 | MS.gene88173 | 0.852812 | 3.61E-61 | -1.69E-46 |
| MS.gene055539 | MS.gene88173 | 0.848725 | 5.10E-60 | -1.69E-46 |
| MS.gene05553 | MS.gene88173 | 0.861087 | 1.31E-63 | -1.69E-46 |
| MS.gene055564 | MS.gene88173 | 0.806729 | 7.14E-50 | -1.69E-46 |
| MS.gene05556 | MS.gene88173 | 0.805 | 1.65E-49 | -1.69E-46 |
| MS.gene055741 | MS.gene88173 | 0.812139 | 4.93E-51 | -1.69E-46 |
| MS.gene055744 | MS.gene88173 | 0.818894 | 1.54E-52 | -1.69E-46 |
| MS.gene05594 | MS.gene88173 | 0.814295 | 1.66E-51 | -1.69E-46 |
| MS.gene056337 | MS.gene88173 | 0.806064 | 9.86E-50 | -1.69E-46 |
| MS.gene056407 | MS.gene88173 | 0.815372 | 9.56E-52 | -1.69E-46 |
| MS.gene056511 | MS.gene88173 | 0.816057 | 6.73E-52 | -1.69E-46 |
| MS.gene056514 | MS.gene88173 | 0.818395 | 2.00E-52 | -1.69E-46 |
| MS.gene056633 | MS.gene88173 | 0.854207 | 1.43E-61 | -1.69E-46 |
| MS.gene056659 | MS.gene88173 | 0.829944 | 3.88E-55 | -1.69E-46 |
| MS.gene056782 | MS.gene88173 | 0.823274 | 1.51E-53 | -1.69E-46 |
| MS.gene056796 | MS.gene88173 | 0.824228 | 9.04E-54 | -1.69E-46 |
| MS.gene056877 | MS.gene88173 | 0.847263 | 1.29E-59 | -1.69E-46 |
| MS.gene056899 | MS.gene88173 | -0.811198 | 7.89E-51 | -1.69E-46 |
| MS.gene057124 | MS.gene88173 | 0.858129 | 1.02E-62 | -1.69E-46 |
| MS.gene057196 | MS.gene88173 | 0.815482 | 9.04E-52 | -1.69E-46 |
| MS.gene057332 | MS.gene88173 | 0.810087 | 1.37E-50 | -1.69E-46 |
| MS.gene057440 | MS.gene88173 | -0.837856 | 4.06E-57 | -1.69E-46 |
| MS.gene057476 | MS.gene88173 | 0.826952 | 2.05E-54 | -1.69E-46 |
| MS.gene057658 | MS.gene88173 | 0.81431 | 1.64E-51 | -1.69E-46 |
| MS.gene057749 | MS.gene88173 | 0.803998 | 2.67E-49 | -1.69E-46 |
| MS.gene058007 | MS.gene88173 | 0.817707 | 2.87E-52 | -1.69E-46 |
| MS.gene058142 | MS.gene88173 | 0.810476 | 1.13E-50 | -1.69E-46 |
| MS.gene058233 | MS.gene88173 | 0.842745 | 2.14E-58 | -1.69E-46 |
| MS.gene058276 | MS.gene88173 | 0.828805 | 7.33E-55 | -1.69E-46 |
| MS.gene058376 | MS.gene88173 | 0.809166 | 2.16E-50 | -1.69E-46 |
| MS.gene05837 | MS.gene88173 | 0.806441 | 8.21E-50 | -1.69E-46 |
| MS.gene058444 | MS.gene88173 | 0.855926 | 4.55E-62 | -1.69E-46 |
| MS.gene058700 | MS.gene88173 | 0.884773 | 1.44E-71 | -1.69E-46 |
| MS.gene058746 | MS.gene88173 | 0.847593 | 1.05E-59 | -1.69E-46 |
| MS.gene05886 | MS.gene88173 | 0.83517 | 1.96E-56 | -1.69E-46 |
| MS.gene059011 | MS.gene88173 | 0.830997 | 2.14E-55 | -1.69E-46 |
| MS.gene059023 | MS.gene88173 | 0.80822 | 3.45E-50 | -1.69E-46 |
| MS.gene059141 | MS.gene88173 | 0.815242 | 1.02E-51 | -1.69E-46 |
| MS.gene05914 | MS.gene88173 | 0.800131 | 1.66E-48 | -1.69E-46 |
| MS.gene059420 | MS.gene88173 | 0.846409 | 2.21E-59 | -1.69E-46 |
| MS.gene059499 | MS.gene88173 | 0.822806 | 1.94E-53 | -1.69E-46 |
| MS.gene059502 | MS.gene88173 | 0.809204 | 2.12E-50 | -1.69E-46 |
| MS.gene059504 | MS.gene88173 | 0.802805 | 4.71E-49 | -1.69E-46 |
| MS.gene059512 | MS.gene88173 | 0.837092 | 6.37E-57 | -1.69E-46 |
| MS.gene059688 | MS.gene88173 | 0.82589 | 3.66E-54 | -1.69E-46 |
| MS.gene059692 | MS.gene88173 | 0.814025 | 1.90E-51 | -1.69E-46 |
| MS.gene059695 | MS.gene88173 | 0.819278 | 1.26E-52 | -1.69E-46 |
| MS.gene060087 | MS.gene88173 | -0.80107 | 1.07E-48 | -1.69E-46 |
| MS.gene060403 | MS.gene88173 | 0.826892 | 2.11E-54 | -1.69E-46 |
| MS.gene060835 | MS.gene88173 | 0.803128 | 4.04E-49 | -1.69E-46 |
| MS.gene06092 | MS.gene88173 | 0.834544 | 2.82E-56 | -1.69E-46 |
| MS.gene061154 | MS.gene88173 | 0.884045 | 2.68E-71 | -1.69E-46 |
| MS.gene061159 | MS.gene88173 | 0.805472 | 1.31E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88173.t1 | MTR_4g052010 | 97.340 | 188 | 5 | 0 | 1 | 188 | 1 | 188 | 2.00e-132 | 369 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88173.t1 | AT2G27290 | 61.658 | 193 | 54 | 4 | 4 | 181 | 3 | 190 | 3.01e-62 | 191 |
Find 36 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTCTTGGTTACTTCTTC+AGG | 0.280999 | 4.4:-50493503 | None:intergenic |
| ACAAAGCTGCATCTCCAATT+AGG | 0.288679 | 4.4:+50494768 | MS.gene88173:CDS |
| AAGGAGTTGCTGGCAAAATA+TGG | 0.314060 | 4.4:+50494485 | MS.gene88173:CDS |
| AGCTTCAAGACCATACTTCT+TGG | 0.339383 | 4.4:-50493516 | None:intergenic |
| ATGGTCTTGAAGCTGGTCTT+TGG | 0.345812 | 4.4:+50493525 | MS.gene88173:CDS |
| ACTGTGGGTGGAAACCTAAT+TGG | 0.379765 | 4.4:-50494782 | None:intergenic |
| AAAAGTCGGTACCTTTGCTT+TGG | 0.406424 | 4.4:+50494733 | MS.gene88173:CDS |
| TGATCAAGCCAAGGAGTTGC+TGG | 0.407305 | 4.4:+50494475 | MS.gene88173:CDS |
| CAATCCAACCAGCTACGATT+GGG | 0.413841 | 4.4:-50494814 | None:intergenic |
| TGAGCAACAAGAAGAGTTCA+AGG | 0.424867 | 4.4:+50493369 | MS.gene88173:CDS |
| GAAGAAGTAACCAAGAAGTA+TGG | 0.441811 | 4.4:+50493506 | MS.gene88173:CDS |
| CCAATCCAACCAGCTACGAT+TGG | 0.459512 | 4.4:-50494815 | None:intergenic |
| TGTTATGTATTAATCAATGC+TGG | 0.464473 | 4.4:+50494560 | MS.gene88173:CDS |
| CCAATCGTAGCTGGTTGGAT+TGG | 0.470086 | 4.4:+50494815 | MS.gene88173:CDS |
| TTCAGGTGAAGAATTCTTTG+AGG | 0.474321 | 4.4:-50493486 | None:intergenic |
| AAGAAGTATGGTCTTGAAGC+TGG | 0.499317 | 4.4:+50493518 | MS.gene88173:CDS |
| TGTTCAAACTTTGCTTCAGA+AGG | 0.506472 | 4.4:+50494589 | MS.gene88173:CDS |
| GCTCTTACCCCAATCGTAGC+TGG | 0.519207 | 4.4:+50494806 | MS.gene88173:CDS |
| GGGGAACAACAGAAATCAAA+AGG | 0.520589 | 4.4:+50494452 | MS.gene88173:CDS |
| GGAATCACTACTGATGCAAC+CGG | 0.523755 | 4.4:+50494707 | MS.gene88173:CDS |
| TTACCCCAATCGTAGCTGGT+TGG | 0.540207 | 4.4:+50494810 | MS.gene88173:CDS |
| TTTCAGTTCAAAGGAAGAAG+GGG | 0.549822 | 4.4:+50494433 | MS.gene88173:CDS |
| AGAGATCAATGACAGAGTAA+TGG | 0.554810 | 4.4:-50494528 | None:intergenic |
| TCTTGAAGCTGGTCTTTGGA+AGG | 0.564484 | 4.4:+50493529 | MS.gene88173:CDS |
| AAAGAAGCACAAGAAGGTGA+TGG | 0.588002 | 4.4:-50493344 | None:intergenic |
| CAATGACAGAGTAATGGAAG+TGG | 0.589427 | 4.4:-50494522 | None:intergenic |
| CTCAGAAAAGAAGCACAAGA+AGG | 0.593610 | 4.4:-50493350 | None:intergenic |
| ATCAAAAGGTGATCAAGCCA+AGG | 0.614436 | 4.4:+50494466 | MS.gene88173:CDS |
| GGGGTAAGAGCTACTGTGGG+TGG | 0.621082 | 4.4:-50494794 | None:intergenic |
| ATTAGATTTACGTGACTGAG+TGG | 0.639111 | 4.4:-50493408 | None:intergenic |
| TGCAGCATATGCCAAAGCAA+AGG | 0.641846 | 4.4:-50494744 | None:intergenic |
| GATTGGGGTAAGAGCTACTG+TGG | 0.646696 | 4.4:-50494798 | None:intergenic |
| AATCCAACCAGCTACGATTG+GGG | 0.648062 | 4.4:-50494813 | None:intergenic |
| GAGTTGCTGGCAAAATATGG+AGG | 0.682334 | 4.4:+50494488 | MS.gene88173:CDS |
| ATTGGGGTAAGAGCTACTGT+GGG | 0.725389 | 4.4:-50494797 | None:intergenic |
| AGCTGTTAAAGAGAAAACTG+AGG | 0.740712 | 4.4:+50493451 | MS.gene88173:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATGAAATTTCTCAATT+TGG | - | chr4.4:50493629-50493648 | None:intergenic | 15.0% |
| !! | TCTAAATTTCTACTTTAAAT+TGG | - | chr4.4:50494066-50494085 | None:intergenic | 15.0% |
| !! | TGTTTGTAAAATGAAAATTA+TGG | + | chr4.4:50494398-50494417 | MS.gene88173:intron | 15.0% |
| !!! | AAATATAAGTTGAGTTTTTA+AGG | + | chr4.4:50494192-50494211 | MS.gene88173:intron | 15.0% |
| !!! | ATTGAGAAATTTCATATTTT+TGG | + | chr4.4:50493630-50493649 | MS.gene88173:intron | 15.0% |
| !!! | TTGAGAAATTTCATATTTTT+GGG | + | chr4.4:50493631-50493650 | MS.gene88173:intron | 15.0% |
| !! | AAACCTAAAATAAAACTCAA+TGG | - | chr4.4:50493883-50493902 | None:intergenic | 20.0% |
| !! | AAATAAACAAGAGAAAGAAA+TGG | - | chr4.4:50493558-50493577 | None:intergenic | 20.0% |
| !! | AATAAACAAGAGAAAGAAAT+GGG | - | chr4.4:50493557-50493576 | None:intergenic | 20.0% |
| !! | ATTATACTTAAATCCACATT+GGG | - | chr4.4:50494633-50494652 | None:intergenic | 20.0% |
| !! | TTAGTATAGAGTATATATGA+AGG | + | chr4.4:50493673-50493692 | MS.gene88173:intron | 20.0% |
| !! | TTGGTTTAATTATGATTATG+TGG | + | chr4.4:50493577-50493596 | MS.gene88173:intron | 20.0% |
| !!! | ATGTCACTTTATCAATTATT+TGG | + | chr4.4:50493850-50493869 | MS.gene88173:intron | 20.0% |
| !!! | TGTCACTTTATCAATTATTT+GGG | + | chr4.4:50493851-50493870 | MS.gene88173:intron | 20.0% |
| !!! | TTACCATTGAGTTTTATTTT+AGG | + | chr4.4:50493877-50493896 | MS.gene88173:intron | 20.0% |
| !!! | TTTCTTTCTCTTGTTTATTT+TGG | + | chr4.4:50493558-50493577 | MS.gene88173:intron | 20.0% |
| !!! | TTTTATTACTGAAATTTGCA+GGG | + | chr4.4:50493712-50493731 | MS.gene88173:intron | 20.0% |
| ! | ACTAATGATTGAAAATCGTT+TGG | - | chr4.4:50494324-50494343 | None:intergenic | 25.0% |
| ! | CATTATACTTAAATCCACAT+TGG | - | chr4.4:50494634-50494653 | None:intergenic | 25.0% |
| ! | TATGAAGGATATTCAAAGAT+AGG | + | chr4.4:50493688-50493707 | MS.gene88173:intron | 25.0% |
| ! | TGTTATGTATTAATCAATGC+TGG | + | chr4.4:50494560-50494579 | MS.gene88173:CDS | 25.0% |
| !! | ATTTGTTTCCTTGATTTTTG+CGG | + | chr4.4:50494222-50494241 | MS.gene88173:intron | 25.0% |
| !! | CTTTTATTACTGAAATTTGC+AGG | + | chr4.4:50493711-50493730 | MS.gene88173:intron | 25.0% |
| CAGTATGCTAAAACAAGAAA+TGG | - | chr4.4:50493911-50493930 | None:intergenic | 30.0% | |
| TATCTCAGCTGTAAAATTGT+TGG | - | chr4.4:50494100-50494119 | None:intergenic | 30.0% | |
| TTTGAACGACATTCAAACAT+TGG | - | chr4.4:50494024-50494043 | None:intergenic | 30.0% | |
| ! | ATTTTCAGTTCAAAGGAAGA+AGG | + | chr4.4:50494431-50494450 | MS.gene88173:CDS | 30.0% |
| ! | TTTGCAGATTTTCAGTTCAA+AGG | + | chr4.4:50494424-50494443 | MS.gene88173:intron | 30.0% |
| ! | TTTTCAGTTCAAAGGAAGAA+GGG | + | chr4.4:50494432-50494451 | MS.gene88173:CDS | 30.0% |
| !! | GACATGGGTTTTATACTTAT+GGG | + | chr4.4:50494275-50494294 | MS.gene88173:intron | 30.0% |
| !! | TGACATGGGTTTTATACTTA+TGG | + | chr4.4:50494274-50494293 | MS.gene88173:intron | 30.0% |
| AGAGATCAATGACAGAGTAA+TGG | - | chr4.4:50494531-50494550 | None:intergenic | 35.0% | |
| AGCTGTTAAAGAGAAAACTG+AGG | + | chr4.4:50493451-50493470 | MS.gene88173:CDS | 35.0% | |
| ATTAGATTTACGTGACTGAG+TGG | - | chr4.4:50493411-50493430 | None:intergenic | 35.0% | |
| CAGTACAGAACATTTCTTGA+AGG | - | chr4.4:50493986-50494005 | None:intergenic | 35.0% | |
| CATTATGTCTGTATATCTGC+AGG | + | chr4.4:50494682-50494701 | MS.gene88173:intron | 35.0% | |
| GAAGAAGTAACCAAGAAGTA+TGG | + | chr4.4:50493506-50493525 | MS.gene88173:CDS | 35.0% | |
| GAGAGGATGAATAATGACAT+GGG | + | chr4.4:50494260-50494279 | MS.gene88173:intron | 35.0% | |
| GCTGTAAAATTGTTGGAACT+TGG | - | chr4.4:50494093-50494112 | None:intergenic | 35.0% | |
| TACTTCTTGGTTACTTCTTC+AGG | - | chr4.4:50493506-50493525 | None:intergenic | 35.0% | |
| TGTTCAAACTTTGCTTCAGA+AGG | + | chr4.4:50494589-50494608 | MS.gene88173:CDS | 35.0% | |
| TTACTGAAATTTGCAGGGAA+AGG | + | chr4.4:50493717-50493736 | MS.gene88173:intron | 35.0% | |
| TTCAGGTGAAGAATTCTTTG+AGG | - | chr4.4:50493489-50493508 | None:intergenic | 35.0% | |
| TTTACAAACAACGAAAAGCG+CGG | - | chr4.4:50494388-50494407 | None:intergenic | 35.0% | |
| TTTCAGTTCAAAGGAAGAAG+GGG | + | chr4.4:50494433-50494452 | MS.gene88173:CDS | 35.0% | |
| ! | CTTTTGTTCCCCTAAAATCA+GGG | - | chr4.4:50493941-50493960 | None:intergenic | 35.0% |
| ! | TCTTTTGTTCCCCTAAAATC+AGG | - | chr4.4:50493942-50493961 | None:intergenic | 35.0% |
| ! | TGGGTTGCTTCTTATTTATG+TGG | + | chr4.4:50493650-50493669 | MS.gene88173:intron | 35.0% |
| !! | TTTGCGGACTATCGTTTTAA+TGG | + | chr4.4:50494238-50494257 | MS.gene88173:intron | 35.0% |
| AAAAGTCGGTACCTTTGCTT+TGG | + | chr4.4:50494733-50494752 | MS.gene88173:CDS | 40.0% | |
| AAATTGGCGACACAAGTCAT+CGG | - | chr4.4:50494050-50494069 | None:intergenic | 40.0% | |
| AAGGAGTTGCTGGCAAAATA+TGG | + | chr4.4:50494485-50494504 | MS.gene88173:CDS | 40.0% | |
| ACAAAGCTGCATCTCCAATT+AGG | + | chr4.4:50494768-50494787 | MS.gene88173:CDS | 40.0% | |
| ACGATAGTCCGCAAAAATCA+AGG | - | chr4.4:50494233-50494252 | None:intergenic | 40.0% | |
| AGCTTCAAGACCATACTTCT+TGG | - | chr4.4:50493519-50493538 | None:intergenic | 40.0% | |
| ATCAAAAGGTGATCAAGCCA+AGG | + | chr4.4:50494466-50494485 | MS.gene88173:CDS | 40.0% | |
| ATGTCTGTATATCTGCAGGT+CGG | + | chr4.4:50494686-50494705 | MS.gene88173:intron | 40.0% | |
| GGAGAGGATGAATAATGACA+TGG | + | chr4.4:50494259-50494278 | MS.gene88173:intron | 40.0% | |
| GGGAACAAAAGATGTGTTGT+GGG | + | chr4.4:50493950-50493969 | MS.gene88173:intron | 40.0% | |
| GGGGAACAACAGAAATCAAA+AGG | + | chr4.4:50494452-50494471 | MS.gene88173:CDS | 40.0% | |
| TGAGCAACAAGAAGAGTTCA+AGG | + | chr4.4:50493369-50493388 | MS.gene88173:CDS | 40.0% | |
| TGCTCATACATAACCCAATG+TGG | + | chr4.4:50494617-50494636 | MS.gene88173:intron | 40.0% | |
| TGCTTGTCCATGTAGAACTT+AGG | + | chr4.4:50493790-50493809 | MS.gene88173:intron | 40.0% | |
| ! | AAAGAAGCACAAGAAGGTGA+TGG | - | chr4.4:50493347-50493366 | None:intergenic | 40.0% |
| ! | AAGAAGTATGGTCTTGAAGC+TGG | + | chr4.4:50493518-50493537 | MS.gene88173:CDS | 40.0% |
| ! | ATATTTTGCCAGCAACTCCT+TGG | - | chr4.4:50494486-50494505 | None:intergenic | 40.0% |
| ! | CAATGACAGAGTAATGGAAG+TGG | - | chr4.4:50494525-50494544 | None:intergenic | 40.0% |
| ! | CTCAGAAAAGAAGCACAAGA+AGG | - | chr4.4:50493353-50493372 | None:intergenic | 40.0% |
| ! | TGCATCGTTCCCTGATTTTA+GGG | + | chr4.4:50493929-50493948 | MS.gene88173:intron | 40.0% |
| !! | GGACTATCGTTTTAATGGAG+AGG | + | chr4.4:50494243-50494262 | MS.gene88173:intron | 40.0% |
| AATCCAACCAGCTACGATTG+GGG | - | chr4.4:50494816-50494835 | None:intergenic | 45.0% | |
| ACTGTGGGTGGAAACCTAAT+TGG | - | chr4.4:50494785-50494804 | None:intergenic | 45.0% | |
| ATTGGGGTAAGAGCTACTGT+GGG | - | chr4.4:50494800-50494819 | None:intergenic | 45.0% | |
| CAATCCAACCAGCTACGATT+GGG | - | chr4.4:50494817-50494836 | None:intergenic | 45.0% | |
| GAGACAGCCTAAGTTCTACA+TGG | - | chr4.4:50493800-50493819 | None:intergenic | 45.0% | |
| GAGTTGCTGGCAAAATATGG+AGG | + | chr4.4:50494488-50494507 | MS.gene88173:CDS | 45.0% | |
| GGAATCACTACTGATGCAAC+CGG | + | chr4.4:50494707-50494726 | MS.gene88173:CDS | 45.0% | |
| GGGGAACAAAAGATGTGTTG+TGG | + | chr4.4:50493949-50493968 | MS.gene88173:intron | 45.0% | |
| TGCAGCATATGCCAAAGCAA+AGG | - | chr4.4:50494747-50494766 | None:intergenic | 45.0% | |
| ! | AAAAGCGCGGCTTTGACTTT+AGG | - | chr4.4:50494375-50494394 | None:intergenic | 45.0% |
| ! | AAAGCGCGGCTTTGACTTTA+GGG | - | chr4.4:50494374-50494393 | None:intergenic | 45.0% |
| ! | CTGCATCGTTCCCTGATTTT+AGG | + | chr4.4:50493928-50493947 | MS.gene88173:intron | 45.0% |
| ! | GCATCGTTCCCTGATTTTAG+GGG | + | chr4.4:50493930-50493949 | MS.gene88173:intron | 45.0% |
| !! | ATGGTCTTGAAGCTGGTCTT+TGG | + | chr4.4:50493525-50493544 | MS.gene88173:CDS | 45.0% |
| !! | TCTTGAAGCTGGTCTTTGGA+AGG | + | chr4.4:50493529-50493548 | MS.gene88173:CDS | 45.0% |
| !! | TTATGGGAGTGTCATCGTGT+CGG | + | chr4.4:50494291-50494310 | MS.gene88173:intron | 45.0% |
| !!! | AAAGGTACCGACTTTTTCGC+CGG | - | chr4.4:50494729-50494748 | None:intergenic | 45.0% |
| CCAATCCAACCAGCTACGAT+TGG | - | chr4.4:50494818-50494837 | None:intergenic | 50.0% | |
| CCAATCGTAGCTGGTTGGAT+TGG | + | chr4.4:50494815-50494834 | MS.gene88173:CDS | 50.0% | |
| GATGCAACCGGCGAAAAAGT+CGG | + | chr4.4:50494719-50494738 | MS.gene88173:CDS | 50.0% | |
| GATTGGGGTAAGAGCTACTG+TGG | - | chr4.4:50494801-50494820 | None:intergenic | 50.0% | |
| TGATCAAGCCAAGGAGTTGC+TGG | + | chr4.4:50494475-50494494 | MS.gene88173:CDS | 50.0% | |
| TTACCCCAATCGTAGCTGGT+TGG | + | chr4.4:50494810-50494829 | MS.gene88173:CDS | 50.0% | |
| GCTCTTACCCCAATCGTAGC+TGG | + | chr4.4:50494806-50494825 | MS.gene88173:CDS | 55.0% | |
| GGGGTAAGAGCTACTGTGGG+TGG | - | chr4.4:50494797-50494816 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 50493323 | 50494862 | 50493323 | ID=MS.gene88173 |
| chr4.4 | mRNA | 50493323 | 50494862 | 50493323 | ID=MS.gene88173.t1;Parent=MS.gene88173 |
| chr4.4 | exon | 50493323 | 50493550 | 50493323 | ID=MS.gene88173.t1.exon1;Parent=MS.gene88173.t1 |
| chr4.4 | CDS | 50493323 | 50493550 | 50493323 | ID=cds.MS.gene88173.t1;Parent=MS.gene88173.t1 |
| chr4.4 | exon | 50494431 | 50494610 | 50494431 | ID=MS.gene88173.t1.exon2;Parent=MS.gene88173.t1 |
| chr4.4 | CDS | 50494431 | 50494610 | 50494431 | ID=cds.MS.gene88173.t1;Parent=MS.gene88173.t1 |
| chr4.4 | exon | 50494704 | 50494862 | 50494704 | ID=MS.gene88173.t1.exon3;Parent=MS.gene88173.t1 |
| chr4.4 | CDS | 50494704 | 50494862 | 50494704 | ID=cds.MS.gene88173.t1;Parent=MS.gene88173.t1 |
| Gene Sequence |
| Protein sequence |
