AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene43489


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43489.t1 MTR_4g134780 98.934 563 6 0 1 563 17 579 0.0 1152
MS.gene43489.t1 MTR_1g054965 31.858 565 318 21 17 550 42 570 5.08e-64 220
MS.gene43489.t1 MTR_1g054965 34.085 355 215 12 203 550 72 414 1.94e-51 182
MS.gene43489.t1 MTR_1g054965 30.080 502 284 21 17 488 42 506 1.33e-43 163
MS.gene43489.t1 MTR_1g054965 31.507 292 181 12 203 488 30 308 2.71e-31 124
MS.gene43489.t1 MTR_8g077580 24.486 584 326 26 24 534 4 545 3.06e-15 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43489.t1 AT1G57770 80.762 525 101 0 39 563 50 574 0.0 899
MS.gene43489.t1 AT1G06820 31.947 529 309 16 39 550 75 569 3.80e-66 226
MS.gene43489.t1 AT1G06820 31.947 529 309 16 39 550 75 569 6.90e-66 225
MS.gene43489.t1 AT1G06820 34.463 354 215 9 203 550 108 450 8.30e-54 190
MS.gene43489.t1 AT1G06820 29.718 461 275 15 39 483 75 502 3.04e-45 167
MS.gene43489.t1 AT5G49555 22.638 561 351 23 31 534 3 537 2.23e-14 76.3

Find 145 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGCAAAGAGTCAAGTATT+TGG 0.236602 8.4:+124638 None:intergenic
ATTGCTCACAACAGCCTTCT+TGG 0.241353 8.4:+123888 None:intergenic
TGCTCAAGTTCTTGATGCTT+TGG 0.242947 8.4:-124986 MS.gene43489:CDS
TCAAGAATGGCAGAAGCTTT+TGG 0.272982 8.4:-124836 MS.gene43489:CDS
TTACTTTCTTTCTTGCTTGC+TGG 0.273947 8.4:-124583 MS.gene43489:CDS
TGCCATTCTTGAACAGCTTC+AGG 0.275584 8.4:+124847 None:intergenic
GAGTCAAGTATTTGGGAAAA+AGG 0.286218 8.4:+124646 None:intergenic
GCTCAAGTTCTTGATGCTTT+GGG 0.288521 8.4:-124985 MS.gene43489:CDS
TTCCAAAGTCTTACTCAAAT+AGG 0.312564 8.4:-123822 MS.gene43489:CDS
ATCATATAGTTGTAAATGAT+TGG 0.312848 8.4:-123635 MS.gene43489:CDS
AACTCAAATGGTTCAGTTCC+TGG 0.320765 8.4:+123507 None:intergenic
ATCTTTCATGCATCTCCATT+TGG 0.323021 8.4:-123776 MS.gene43489:CDS
CTGAGGACCCATTTGGAAAA+AGG 0.326579 8.4:+124699 None:intergenic
GCTGGTACAGATACCTTTCC+TGG 0.338263 8.4:-123200 MS.gene43489:CDS
TTGCAAAGAGTCAAGTATTT+GGG 0.338675 8.4:+124639 None:intergenic
AGCTTTAAGATTTCTGTATT+CGG 0.338946 8.4:+123458 None:intergenic
GTGTTACATGCTTATCTTCC+AGG 0.349073 8.4:-123525 MS.gene43489:CDS
CTATCAGTTCGAGGAGATTT+CGG 0.355188 8.4:-124769 MS.gene43489:CDS
CAACAATAAAGGTGTGGAAT+TGG 0.355420 8.4:+123167 None:intergenic
TCTTTCATGCATCTCCATTT+GGG 0.358441 8.4:-123775 MS.gene43489:CDS
TCCCAGCTGCTTGATGCAAT+TGG 0.358531 8.4:-123053 MS.gene43489:CDS
CCTGCGCTACTTATGATTCA+TGG 0.371994 8.4:-124951 MS.gene43489:CDS
ATCCTATTTGAGTAAGACTT+TGG 0.386923 8.4:+123820 None:intergenic
GAAACAGATGTAATTGTGAT+TGG 0.389065 8.4:-125195 MS.gene43489:CDS
TGGAGTCTCCACAACAATAA+AGG 0.393345 8.4:+123156 None:intergenic
AGAATCCTTTCATACGCAAT+TGG 0.397759 8.4:-124612 MS.gene43489:CDS
ACTCCTAATCTGGCACCTAC+TGG 0.397996 8.4:-123555 MS.gene43489:CDS
TTCCAATTGCATCAAGCAGC+TGG 0.400845 8.4:+123051 None:intergenic
CATTTCTCCCTGCTGAATCC+TGG 0.401568 8.4:+123305 None:intergenic
TCATATAGTTGTAAATGATT+GGG 0.417919 8.4:-123634 MS.gene43489:CDS
TAGTGTACTTACTCCTAATC+TGG 0.419014 8.4:-123565 MS.gene43489:CDS
AACTGAACCATTTGAGTTGT+GGG 0.419173 8.4:-123502 MS.gene43489:CDS
CAGGGTATACGCAGCGATCT+AGG 0.420176 8.4:-123663 MS.gene43489:CDS
TCCGGTCCATCATTATTCTC+TGG 0.421373 8.4:-125042 MS.gene43489:CDS
ATTGTGATTGGGAGTGGTAT+TGG 0.424946 8.4:-125183 MS.gene43489:CDS
GTCATAGTAATGGGAGGATT+AGG 0.428264 8.4:-125266 MS.gene43489:CDS
AAATCTCCTCGAACTGATAG+AGG 0.432086 8.4:+124772 None:intergenic
GTTGTAAATGATTGGGAAAG+AGG 0.432129 8.4:-123627 MS.gene43489:CDS
GAGCAGCCTGAGGACCCATT+TGG 0.432543 8.4:+124692 None:intergenic
TCACACATCAAAGGTTTCTT+CGG 0.434054 8.4:-123256 MS.gene43489:CDS
GTACGAGGACTAGAGAAGTT+TGG 0.436491 8.4:-124077 MS.gene43489:CDS
ATCATCATAGTCATAGTAAT+GGG 0.437707 8.4:-125275 MS.gene43489:CDS
CGTGACAAGAAATCAGCTTC+AGG 0.438051 8.4:+124916 None:intergenic
ACTGCAGGGACGCCAATGCC+AGG 0.458440 8.4:+123128 None:intergenic
AAATGTGAAGTGAAGTTAGT+TGG 0.458953 8.4:-123287 MS.gene43489:CDS
ACTTTGGAACAACTTCTTGA+GGG 0.464503 8.4:+123836 None:intergenic
GCACCACTGGCAGCAACTGC+AGG 0.466053 8.4:+123113 None:intergenic
TCTGTACCAGCTTGTATAGC+TGG 0.473355 8.4:+123212 None:intergenic
CAGTGGGACCAGGATTCAGC+AGG 0.478022 8.4:-123313 MS.gene43489:CDS
AGGTTTACATGTTTGCAGAA+TGG 0.481167 8.4:-124163 MS.gene43489:CDS
AAAGGCTATAAGTTTGATTC+CGG 0.484501 8.4:-125060 MS.gene43489:CDS
GATTAGGAAAGGTGGGGTTG+TGG 0.485581 8.4:-125250 MS.gene43489:CDS
ATTCCACACCTTTATTGTTG+TGG 0.492890 8.4:-123164 MS.gene43489:CDS
AAACAGATGTAATTGTGATT+GGG 0.492966 8.4:-125194 MS.gene43489:CDS
CATCATCATAGTCATAGTAA+TGG 0.495952 8.4:-125276 MS.gene43489:CDS
GTGGAGAGAGCAGTGGGACC+AGG 0.499060 8.4:-123323 MS.gene43489:CDS
ATGGGAGGATTAGGAAAGGT+GGG 0.499467 8.4:-125257 MS.gene43489:CDS
CAGCACCTCCAGCATGGTCG+TGG 0.499748 8.4:+125100 None:intergenic
CGGAGGAACAGAGGAACATA+TGG 0.499814 8.4:-123236 MS.gene43489:CDS
AGTCCTTCCCACAACTCAAA+TGG 0.501774 8.4:+123495 None:intergenic
CAATACCTGCAGCTCCATCA+AGG 0.503593 8.4:+124111 None:intergenic
TCCCTTGTCTACAGCTGCAA+TGG 0.505505 8.4:-124803 MS.gene43489:CDS
AGAAATCAGCTTCAGGTACA+TGG 0.506854 8.4:+124923 None:intergenic
CTCCTAATCTGGCACCTACT+GGG 0.508705 8.4:-123554 MS.gene43489:CDS
GCTTCTCAGCTTCACTCCAA+TGG 0.509152 8.4:+123998 None:intergenic
CCTCAGCATCAAATCCCAAA+TGG 0.511011 8.4:+123761 None:intergenic
CCATGAATCATAAGTAGCGC+AGG 0.513899 8.4:+124951 None:intergenic
GACGCCAATGCCAGGAAAAG+TGG 0.514468 8.4:+123136 None:intergenic
TAGTATATTGTCTGCAGAGA+TGG 0.518916 8.4:-124548 MS.gene43489:intron
TTCCCAGTAGGTGCCAGATT+AGG 0.527245 8.4:+123552 None:intergenic
ACCAGAGAATAATGATGGAC+CGG 0.531175 8.4:+125041 None:intergenic
GAACTGAACCATTTGAGTTG+TGG 0.531241 8.4:-123503 MS.gene43489:CDS
ATTAGCTACAATTGCACCAC+TGG 0.535074 8.4:+123100 None:intergenic
GACTTTGGAACAACTTCTTG+AGG 0.536940 8.4:+123835 None:intergenic
GTCCTGAAGCTGTTCAAGAA+TGG 0.537122 8.4:-124849 MS.gene43489:CDS
TCAATCCAATTGCGTATGAA+AGG 0.537955 8.4:+124607 None:intergenic
TGCAAACCAGAGAATAATGA+TGG 0.543994 8.4:+125036 None:intergenic
TTCGAAAGCCACGACCATGC+TGG 0.544052 8.4:-125108 MS.gene43489:CDS
TTCTCTGGTTTGCAGTCAAG+AGG 0.544317 8.4:-125027 MS.gene43489:CDS
AAGGACCTTCACAACTATGC+AGG 0.545742 8.4:-124871 MS.gene43489:CDS
CGCTACTTATGATTCATGGA+TGG 0.556127 8.4:-124947 MS.gene43489:CDS
GTCCCTGCAGTTGCTGCCAG+TGG 0.557851 8.4:-123116 MS.gene43489:CDS
AGCCATTGCAGCTGTAGACA+AGG 0.561564 8.4:+124801 None:intergenic
AATACCTGCAGCTCCATCAA+GGG 0.564396 8.4:+124112 None:intergenic
TCCAATTGCATCAAGCAGCT+GGG 0.566641 8.4:+123052 None:intergenic
GTGATTGGGAGTGGTATTGG+TGG 0.570399 8.4:-125180 MS.gene43489:CDS
GCATCAAGAACTTGAGCAAG+AGG 0.572179 8.4:+124991 None:intergenic
GTTGAAAATGACAGAGCCAT+TGG 0.574831 8.4:-124014 MS.gene43489:CDS
CCATTTGGGATTTGATGCTG+AGG 0.576837 8.4:-123761 MS.gene43489:intron
TTTGCAGTCAAGAGGTCCAC+AGG 0.577098 8.4:-125019 MS.gene43489:CDS
CACATCAAAGGTTTCTTCGG+AGG 0.578196 8.4:-123253 MS.gene43489:CDS
AATCTCCTCGAACTGATAGA+GGG 0.579191 8.4:+124773 None:intergenic
CAGGACCTGCATAGTTGTGA+AGG 0.579792 8.4:+124866 None:intergenic
AGAGCAGTGGAGAGAGCAGT+GGG 0.579813 8.4:-123329 MS.gene43489:CDS
GAAGTCCACTCACACATCAA+AGG 0.579934 8.4:-123265 MS.gene43489:CDS
GCAGTTCGTACATGCCAAGA+AGG 0.580617 8.4:-123902 MS.gene43489:intron
GAGAGCAGTGGAGAGAGCAG+TGG 0.581460 8.4:-123330 MS.gene43489:CDS
ATCATAAGTAGCGCAGGGGA+CGG 0.583077 8.4:+124957 None:intergenic
ACTGAGTTGTGCAGCACTGT+TGG 0.584888 8.4:-125157 MS.gene43489:CDS
AATGGGAGGATTAGGAAAGG+TGG 0.589689 8.4:-125258 MS.gene43489:CDS
GCCATTGCAGCTGTAGACAA+GGG 0.590322 8.4:+124802 None:intergenic
CGAGGACTAGAGAAGTTTGG+TGG 0.591605 8.4:-124074 MS.gene43489:CDS
CAAACAACAAATAGATAATG+TGG 0.592493 8.4:-123352 MS.gene43489:intron
GATGTAATTGTGATTGGGAG+TGG 0.593011 8.4:-125189 MS.gene43489:CDS
AGATTAGGAGTAAGTACACT+AGG 0.595451 8.4:+123567 None:intergenic
GCTGATTTCTTGTCACGCAT+AGG 0.597690 8.4:-124910 MS.gene43489:CDS
CACCACTGGCAGCAACTGCA+GGG 0.605933 8.4:+123114 None:intergenic
TGGAGTTGAATGTCCAGGAA+AGG 0.606615 8.4:+123187 None:intergenic
CATGAATCATAAGTAGCGCA+GGG 0.607675 8.4:+124952 None:intergenic
GAACCATTTGAGTTGTGGGA+AGG 0.609081 8.4:-123498 MS.gene43489:CDS
TTTGCAGAATGGTACAAACC+AGG 0.612324 8.4:-124152 MS.gene43489:CDS
TATGGACCAGCTATACAAGC+TGG 0.613740 8.4:-123218 MS.gene43489:CDS
TTGCAGAATGGTACAAACCA+GGG 0.620272 8.4:-124151 MS.gene43489:CDS
ATAGATAATGTGGAGAGCAG+TGG 0.622582 8.4:-123342 MS.gene43489:intron
GGAATTGGAGTTGAATGTCC+AGG 0.624562 8.4:+123182 None:intergenic
AGTAATGGGAGGATTAGGAA+AGG 0.625364 8.4:-125261 MS.gene43489:CDS
AGGTTTCTTCGGAGGAACAG+AGG 0.626999 8.4:-123245 MS.gene43489:CDS
GACTAGAGAAGTTTGGTGGG+CGG 0.629357 8.4:-124070 MS.gene43489:CDS
ATTGTTGATGCTCTTGTACG+AGG 0.629566 8.4:-124092 MS.gene43489:CDS
CATCAAGAACTTGAGCAAGA+GGG 0.633604 8.4:+124992 None:intergenic
ATTGGAGTGAAGCTGAGAAG+CGG 0.638801 8.4:-123996 MS.gene43489:CDS
ATCTCCTCGAACTGATAGAG+GGG 0.641198 8.4:+124774 None:intergenic
AATGAGCAGCACCTCCAGCA+TGG 0.642493 8.4:+125094 None:intergenic
ATACCTGCAGCTCCATCAAG+GGG 0.643456 8.4:+124113 None:intergenic
TCTTAAAGCTCAAAGATCAG+AGG 0.643901 8.4:-123445 MS.gene43489:intron
TGCAGAATGGTACAAACCAG+GGG 0.644445 8.4:-124150 MS.gene43489:CDS
ATCATAGTCATAGTAATGGG+AGG 0.651087 8.4:-125272 MS.gene43489:CDS
AAAAGGTGAGAGAAGTTGTG+TGG 0.652152 8.4:+124663 None:intergenic
TGTAACACATGTTTCCCAGT+AGG 0.652977 8.4:+123540 None:intergenic
TGAGCAAGAGGGTTAGCCTG+TGG 0.654171 8.4:+125003 None:intergenic
GATTTCTCTTCAAAGTCACG+TGG 0.656256 8.4:-124048 MS.gene43489:CDS
GAGGACTAGAGAAGTTTGGT+GGG 0.661720 8.4:-124073 MS.gene43489:CDS
TCTCCACAACAATAAAGGTG+TGG 0.665845 8.4:+123161 None:intergenic
AGAAACCTTTGATGTGTGAG+TGG 0.673422 8.4:+123260 None:intergenic
AGGTGCATATCTAGCAGCAG+CGG 0.676346 8.4:+124735 None:intergenic
TCTCCTCGAACTGATAGAGG+GGG 0.678258 8.4:+124775 None:intergenic
GAAAGCCACGACCATGCTGG+AGG 0.682926 8.4:-125105 MS.gene43489:CDS
TGGGAGGATTAGGAAAGGTG+GGG 0.683293 8.4:-125256 MS.gene43489:CDS
AGTGGGACCAGGATTCAGCA+GGG 0.693423 8.4:-123312 MS.gene43489:CDS
TGTGAGCAATGCATCAATGT+GGG 0.699079 8.4:-123875 MS.gene43489:CDS
TTGTGAGCAATGCATCAATG+TGG 0.700183 8.4:-123876 MS.gene43489:CDS
GTGGAACGAAGAGCAGCCTG+AGG 0.714071 8.4:+124682 None:intergenic
ATGAATCATAAGTAGCGCAG+GGG 0.721253 8.4:+124953 None:intergenic
GCAGAATGGTACAAACCAGG+GGG 0.746992 8.4:-124149 MS.gene43489:CDS
TACCTGCAGCTCCATCAAGG+GGG 0.749948 8.4:+124114 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAAATTAATATACTTACT+TGG + chr8.4:124391-124410 None:intergenic 15.0%
!!! TGATTTTTAAGAAATGAAAT+TGG + chr8.4:124062-124081 None:intergenic 15.0%
!! ATAACACATAAATCTCTAAA+GGG - chr8.4:123979-123998 MS.gene43489:intron 20.0%
!! ATCATATAGTTGTAAATGAT+TGG - chr8.4:124726-124745 MS.gene43489:CDS 20.0%
!! TCATATAGTTGTAAATGATT+GGG - chr8.4:124727-124746 MS.gene43489:CDS 20.0%
! AAACAGATGTAATTGTGATT+GGG - chr8.4:123167-123186 MS.gene43489:CDS 25.0%
! ATCATCATAGTCATAGTAAT+GGG - chr8.4:123086-123105 MS.gene43489:CDS 25.0%
! CAAACAACAAATAGATAATG+TGG - chr8.4:125009-125028 MS.gene43489:CDS 25.0%
! CATAACACATAAATCTCTAA+AGG - chr8.4:123978-123997 MS.gene43489:intron 25.0%
!! TTCAATACCTTTTTCCAAAT+GGG - chr8.4:123655-123674 MS.gene43489:CDS 25.0%
!! TTTCAATACCTTTTTCCAAA+TGG - chr8.4:123654-123673 MS.gene43489:CDS 25.0%
!!! AAAAAGGTATTGAAAAGAGA+AGG + chr8.4:123649-123668 None:intergenic 25.0%
!!! AGCTTTAAGATTTCTGTATT+CGG + chr8.4:124906-124925 None:intergenic 25.0%
AAAGGCTATAAGTTTGATTC+CGG - chr8.4:123301-123320 MS.gene43489:CDS 30.0%
AAATGTGAAGTGAAGTTAGT+TGG - chr8.4:125074-125093 MS.gene43489:CDS 30.0%
AGGATAGAAACTAGTTATTG+TGG + chr8.4:123920-123939 None:intergenic 30.0%
ATCCTATTTGAGTAAGACTT+TGG + chr8.4:124544-124563 None:intergenic 30.0%
CATCATCATAGTCATAGTAA+TGG - chr8.4:123085-123104 MS.gene43489:CDS 30.0%
GAAACAGATGTAATTGTGAT+TGG - chr8.4:123166-123185 MS.gene43489:CDS 30.0%
TTCCAAAGTCTTACTCAAAT+AGG - chr8.4:124539-124558 MS.gene43489:intron 30.0%
TTGCAAAGAGTCAAGTATTT+GGG + chr8.4:123725-123744 None:intergenic 30.0%
ACCTAAAAGCAGCAGTTAAA+TGG - chr8.4:124081-124100 MS.gene43489:CDS 35.0%
ACTGTCTCTAAGTAAACAAC+AGG + chr8.4:124025-124044 None:intergenic 35.0%
AGAATCCTTTCATACGCAAT+TGG - chr8.4:123749-123768 MS.gene43489:intron 35.0%
AGATTAGGAGTAAGTACACT+AGG + chr8.4:124797-124816 None:intergenic 35.0%
AGGTTTACATGTTTGCAGAA+TGG - chr8.4:124198-124217 MS.gene43489:intron 35.0%
ATCTTTCATGCATCTCCATT+TGG - chr8.4:124585-124604 MS.gene43489:CDS 35.0%
ATTCCACACCTTTATTGTTG+TGG - chr8.4:125197-125216 MS.gene43489:CDS 35.0%
GAAAACTAACGAAATAGTGC+TGG - chr8.4:124107-124126 MS.gene43489:CDS 35.0%
GAATACTTCAAACAGATGCA+TGG + chr8.4:124665-124684 None:intergenic 35.0%
GAGTCAAGTATTTGGGAAAA+AGG + chr8.4:123718-123737 None:intergenic 35.0%
GTTGCAAAGAGTCAAGTATT+TGG + chr8.4:123726-123745 None:intergenic 35.0%
GTTGTAAATGATTGGGAAAG+AGG - chr8.4:124734-124753 MS.gene43489:CDS 35.0%
TAGTATATTGTCTGCAGAGA+TGG - chr8.4:123813-123832 MS.gene43489:CDS 35.0%
TAGTGTACTTACTCCTAATC+TGG - chr8.4:124796-124815 MS.gene43489:CDS 35.0%
TCAATCCAATTGCGTATGAA+AGG + chr8.4:123757-123776 None:intergenic 35.0%
TCACACATCAAAGGTTTCTT+CGG - chr8.4:125105-125124 MS.gene43489:CDS 35.0%
TCTGCACAAAAAAATGAGAG+AGG + chr8.4:123940-123959 None:intergenic 35.0%
TCTTAAAGCTCAAAGATCAG+AGG - chr8.4:124916-124935 MS.gene43489:CDS 35.0%
TCTTTCATGCATCTCCATTT+GGG - chr8.4:124586-124605 MS.gene43489:CDS 35.0%
TGCAAACCAGAGAATAATGA+TGG + chr8.4:123328-123347 None:intergenic 35.0%
TTACTTTCTTTCTTGCTTGC+TGG - chr8.4:123778-123797 MS.gene43489:CDS 35.0%
! AGGTCCTACTGAGTTTTTAA+AGG - chr8.4:123471-123490 MS.gene43489:CDS 35.0%
! AGGTCCTTTAAAAACTCAGT+AGG + chr8.4:123478-123497 None:intergenic 35.0%
! ATCATAGTCATAGTAATGGG+AGG - chr8.4:123089-123108 MS.gene43489:CDS 35.0%
! CAACAATAAAGGTGTGGAAT+TGG + chr8.4:125197-125216 None:intergenic 35.0%
! GCTCATTCTTTTGATGTCAA+AGG - chr8.4:123283-123302 MS.gene43489:CDS 35.0%
!! AACTGAACCATTTGAGTTGT+GGG - chr8.4:124859-124878 MS.gene43489:CDS 35.0%
!! ACTTTGGAACAACTTCTTGA+GGG + chr8.4:124528-124547 None:intergenic 35.0%
!!! TCCATTTAACTGCTGCTTTT+AGG + chr8.4:124085-124104 None:intergenic 35.0%
AAAAGGTGAGAGAAGTTGTG+TGG + chr8.4:123701-123720 None:intergenic 40.0%
AAACATGTAAACCTGAGGGA+AGG + chr8.4:124192-124211 None:intergenic 40.0%
AAATCTCCTCGAACTGATAG+AGG + chr8.4:123592-123611 None:intergenic 40.0%
AACATGTAAACCTGAGGGAA+GGG + chr8.4:124191-124210 None:intergenic 40.0%
AACTCAAATGGTTCAGTTCC+TGG + chr8.4:124857-124876 None:intergenic 40.0%
AATCTCCTCGAACTGATAGA+GGG + chr8.4:123591-123610 None:intergenic 40.0%
AGAAACCTTTGATGTGTGAG+TGG + chr8.4:125104-125123 None:intergenic 40.0%
AGAAATCAGCTTCAGGTACA+TGG + chr8.4:123441-123460 None:intergenic 40.0%
ATAGATAATGTGGAGAGCAG+TGG - chr8.4:125019-125038 MS.gene43489:CDS 40.0%
ATGAATCATAAGTAGCGCAG+GGG + chr8.4:123411-123430 None:intergenic 40.0%
ATTAGCTACAATTGCACCAC+TGG + chr8.4:125264-125283 None:intergenic 40.0%
ATTGTGATTGGGAGTGGTAT+TGG - chr8.4:123178-123197 MS.gene43489:CDS 40.0%
ATTGTTGATGCTCTTGTACG+AGG - chr8.4:124269-124288 MS.gene43489:intron 40.0%
CATCAAGAACTTGAGCAAGA+GGG + chr8.4:123372-123391 None:intergenic 40.0%
CATGAATCATAAGTAGCGCA+GGG + chr8.4:123412-123431 None:intergenic 40.0%
CGCTACTTATGATTCATGGA+TGG - chr8.4:123414-123433 MS.gene43489:intron 40.0%
CTATCAGTTCGAGGAGATTT+CGG - chr8.4:123592-123611 MS.gene43489:CDS 40.0%
CTGCAAACATGTAAACCTGA+GGG + chr8.4:124196-124215 None:intergenic 40.0%
GATGTAATTGTGATTGGGAG+TGG - chr8.4:123172-123191 MS.gene43489:CDS 40.0%
GATTTCTCTTCAAAGTCACG+TGG - chr8.4:124313-124332 MS.gene43489:intron 40.0%
GCTCAAGTTCTTGATGCTTT+GGG - chr8.4:123376-123395 MS.gene43489:intron 40.0%
GTGTTACATGCTTATCTTCC+AGG - chr8.4:124836-124855 MS.gene43489:CDS 40.0%
GTTGAAAATGACAGAGCCAT+TGG - chr8.4:124347-124366 MS.gene43489:intron 40.0%
TATTCAACATCGAGTGAGCA+GGG - chr8.4:124680-124699 MS.gene43489:CDS 40.0%
TCTCCACAACAATAAAGGTG+TGG + chr8.4:125203-125222 None:intergenic 40.0%
TCTGCAAACATGTAAACCTG+AGG + chr8.4:124197-124216 None:intergenic 40.0%
TGCTCAAGTTCTTGATGCTT+TGG - chr8.4:123375-123394 MS.gene43489:intron 40.0%
TGGAGTCTCCACAACAATAA+AGG + chr8.4:125208-125227 None:intergenic 40.0%
TGTAACACATGTTTCCCAGT+AGG + chr8.4:124824-124843 None:intergenic 40.0%
TGTGAGCAATGCATCAATGT+GGG - chr8.4:124486-124505 MS.gene43489:intron 40.0%
TTGCAGAATGGTACAAACCA+GGG - chr8.4:124210-124229 MS.gene43489:intron 40.0%
TTGTGAGCAATGCATCAATG+TGG - chr8.4:124485-124504 MS.gene43489:intron 40.0%
TTTGCAGAATGGTACAAACC+AGG - chr8.4:124209-124228 MS.gene43489:intron 40.0%
! AATGATTGCACGTTGATGAG+TGG + chr8.4:123871-123890 None:intergenic 40.0%
! AGTAATGGGAGGATTAGGAA+AGG - chr8.4:123100-123119 MS.gene43489:CDS 40.0%
! GTCATAGTAATGGGAGGATT+AGG - chr8.4:123095-123114 MS.gene43489:CDS 40.0%
! TCAAGAATGGCAGAAGCTTT+TGG - chr8.4:123525-123544 MS.gene43489:CDS 40.0%
!! ACCAGAGAATAATGATGGAC+CGG + chr8.4:123323-123342 None:intergenic 40.0%
!! GAACTGAACCATTTGAGTTG+TGG - chr8.4:124858-124877 MS.gene43489:CDS 40.0%
!! GACTTTGGAACAACTTCTTG+AGG + chr8.4:124529-124548 None:intergenic 40.0%
!! TGATGAGTGGTAATGGCAAT+TGG + chr8.4:123858-123877 None:intergenic 40.0%
AAGGACCTTCACAACTATGC+AGG - chr8.4:123490-123509 MS.gene43489:CDS 45.0%
AATACCTGCAGCTCCATCAA+GGG + chr8.4:124252-124271 None:intergenic 45.0%
AATGGGAGGATTAGGAAAGG+TGG - chr8.4:123103-123122 MS.gene43489:CDS 45.0%
AGTCCTTCCCACAACTCAAA+TGG + chr8.4:124869-124888 None:intergenic 45.0%
ATCTCCTCGAACTGATAGAG+GGG + chr8.4:123590-123609 None:intergenic 45.0%
ATGGGAGGATTAGGAAAGGT+GGG - chr8.4:123104-123123 MS.gene43489:CDS 45.0%
ATTGCTCACAACAGCCTTCT+TGG + chr8.4:124476-124495 None:intergenic 45.0%
ATTGGAGTGAAGCTGAGAAG+CGG - chr8.4:124365-124384 MS.gene43489:intron 45.0%
CACATCAAAGGTTTCTTCGG+AGG - chr8.4:125108-125127 MS.gene43489:CDS 45.0%
CCATGAATCATAAGTAGCGC+AGG + chr8.4:123413-123432 None:intergenic 45.0%
CCTCAGCATCAAATCCCAAA+TGG + chr8.4:124603-124622 None:intergenic 45.0%
CCTGCGCTACTTATGATTCA+TGG - chr8.4:123410-123429 MS.gene43489:intron 45.0%
CGTGACAAGAAATCAGCTTC+AGG + chr8.4:123448-123467 None:intergenic 45.0%
CTGAGGACCCATTTGGAAAA+AGG + chr8.4:123665-123684 None:intergenic 45.0%
GAAGTCCACTCACACATCAA+AGG - chr8.4:125096-125115 MS.gene43489:CDS 45.0%
GAGGACTAGAGAAGTTTGGT+GGG - chr8.4:124288-124307 MS.gene43489:intron 45.0%
GCATCAAGAACTTGAGCAAG+AGG + chr8.4:123373-123392 None:intergenic 45.0%
GGAATTGGAGTTGAATGTCC+AGG + chr8.4:125182-125201 None:intergenic 45.0%
GTACGAGGACTAGAGAAGTT+TGG - chr8.4:124284-124303 MS.gene43489:intron 45.0%
GTATTCAACATCGAGTGAGC+AGG - chr8.4:124679-124698 MS.gene43489:CDS 45.0%
GTCCTGAAGCTGTTCAAGAA+TGG - chr8.4:123512-123531 MS.gene43489:CDS 45.0%
TATGGACCAGCTATACAAGC+TGG - chr8.4:125143-125162 MS.gene43489:CDS 45.0%
TCCAATTGCATCAAGCAGCT+GGG + chr8.4:125312-125331 None:intergenic 45.0%
TCCGGTCCATCATTATTCTC+TGG - chr8.4:123319-123338 MS.gene43489:CDS 45.0%
TCTGTACCAGCTTGTATAGC+TGG + chr8.4:125152-125171 None:intergenic 45.0%
TGCAGAATGGTACAAACCAG+GGG - chr8.4:124211-124230 MS.gene43489:intron 45.0%
TGCCATTCTTGAACAGCTTC+AGG + chr8.4:123517-123536 None:intergenic 45.0%
TGGAGTTGAATGTCCAGGAA+AGG + chr8.4:125177-125196 None:intergenic 45.0%
TTCCAATTGCATCAAGCAGC+TGG + chr8.4:125313-125332 None:intergenic 45.0%
! CCATTTGGGATTTGATGCTG+AGG - chr8.4:124600-124619 MS.gene43489:CDS 45.0%
! CTTTTTCCAAATGGGTCCTC+AGG - chr8.4:123663-123682 MS.gene43489:CDS 45.0%
! GCTGATTTCTTGTCACGCAT+AGG - chr8.4:123451-123470 MS.gene43489:CDS 45.0%
! TGCACGTTGATGAGTGGTAA+TGG + chr8.4:123865-123884 None:intergenic 45.0%
! TTCTCTGGTTTGCAGTCAAG+AGG - chr8.4:123334-123353 MS.gene43489:CDS 45.0%
! TTGATGCTGAGGTGAGGTTT+TGG - chr8.4:124611-124630 MS.gene43489:CDS 45.0%
!! GAACCATTTGAGTTGTGGGA+AGG - chr8.4:124863-124882 MS.gene43489:CDS 45.0%
ACTCCTAATCTGGCACCTAC+TGG - chr8.4:124806-124825 MS.gene43489:CDS 50.0%
ACTGAGTTGTGCAGCACTGT+TGG - chr8.4:123204-123223 MS.gene43489:CDS 50.0%
AGCCATTGCAGCTGTAGACA+AGG + chr8.4:123563-123582 None:intergenic 50.0%
AGGTGCATATCTAGCAGCAG+CGG + chr8.4:123629-123648 None:intergenic 50.0%
AGGTTTCTTCGGAGGAACAG+AGG - chr8.4:125116-125135 MS.gene43489:CDS 50.0%
ATACCTGCAGCTCCATCAAG+GGG + chr8.4:124251-124270 None:intergenic 50.0%
ATCATAAGTAGCGCAGGGGA+CGG + chr8.4:123407-123426 None:intergenic 50.0%
CAATACCTGCAGCTCCATCA+AGG + chr8.4:124253-124272 None:intergenic 50.0%
CAGGACCTGCATAGTTGTGA+AGG + chr8.4:123498-123517 None:intergenic 50.0%
CATTTCTCCCTGCTGAATCC+TGG + chr8.4:125059-125078 None:intergenic 50.0%
CGAGGACTAGAGAAGTTTGG+TGG - chr8.4:124287-124306 MS.gene43489:intron 50.0%
CGGAGGAACAGAGGAACATA+TGG - chr8.4:125125-125144 MS.gene43489:CDS 50.0%
CTCCTAATCTGGCACCTACT+GGG - chr8.4:124807-124826 MS.gene43489:CDS 50.0%
GATTAGGAAAGGTGGGGTTG+TGG - chr8.4:123111-123130 MS.gene43489:CDS 50.0%
GCAGAATGGTACAAACCAGG+GGG - chr8.4:124212-124231 MS.gene43489:intron 50.0%
GCAGTTCGTACATGCCAAGA+AGG - chr8.4:124459-124478 MS.gene43489:intron 50.0%
GCCATTGCAGCTGTAGACAA+GGG + chr8.4:123562-123581 None:intergenic 50.0%
GCTGGTACAGATACCTTTCC+TGG - chr8.4:125161-125180 MS.gene43489:CDS 50.0%
GCTTCTCAGCTTCACTCCAA+TGG + chr8.4:124366-124385 None:intergenic 50.0%
TCCCAGCTGCTTGATGCAAT+TGG - chr8.4:125308-125327 MS.gene43489:CDS 50.0%
TCCCTTGTCTACAGCTGCAA+TGG - chr8.4:123558-123577 MS.gene43489:CDS 50.0%
TCTCCTCGAACTGATAGAGG+GGG + chr8.4:123589-123608 None:intergenic 50.0%
TGGGAGGATTAGGAAAGGTG+GGG - chr8.4:123105-123124 MS.gene43489:CDS 50.0%
TGGGATTTGATGCTGAGGTG+AGG - chr8.4:124605-124624 MS.gene43489:CDS 50.0%
TGTCTTGAGTACCCCCTTGA+TGG - chr8.4:124236-124255 MS.gene43489:intron 50.0%
TTCCCAGTAGGTGCCAGATT+AGG + chr8.4:124812-124831 None:intergenic 50.0%
TTTGCAGTCAAGAGGTCCAC+AGG - chr8.4:123342-123361 MS.gene43489:intron 50.0%
! GACTAGAGAAGTTTGGTGGG+CGG - chr8.4:124291-124310 MS.gene43489:intron 50.0%
! GTGATTGGGAGTGGTATTGG+TGG - chr8.4:123181-123200 MS.gene43489:CDS 50.0%
!! GACTCCACTTTTCCTGGCAT+TGG - chr8.4:125221-125240 MS.gene43489:CDS 50.0%
!! TGTGGAGACTCCACTTTTCC+TGG - chr8.4:125215-125234 MS.gene43489:CDS 50.0%
AATGAGCAGCACCTCCAGCA+TGG + chr8.4:123270-123289 None:intergenic 55.0%
AGAGCAGTGGAGAGAGCAGT+GGG - chr8.4:125032-125051 MS.gene43489:CDS 55.0%
AGTGGGACCAGGATTCAGCA+GGG - chr8.4:125049-125068 MS.gene43489:CDS 55.0%
CAGGGTATACGCAGCGATCT+AGG - chr8.4:124698-124717 MS.gene43489:CDS 55.0%
CTTCCCCCTCTATCAGTTCG+AGG - chr8.4:123583-123602 MS.gene43489:CDS 55.0%
GACGCCAATGCCAGGAAAAG+TGG + chr8.4:125228-125247 None:intergenic 55.0%
TACCTGCAGCTCCATCAAGG+GGG + chr8.4:124250-124269 None:intergenic 55.0%
TTCGAAAGCCACGACCATGC+TGG - chr8.4:123253-123272 MS.gene43489:CDS 55.0%
!! TGAGCAAGAGGGTTAGCCTG+TGG + chr8.4:123361-123380 None:intergenic 55.0%
CACCACTGGCAGCAACTGCA+GGG + chr8.4:125250-125269 None:intergenic 60.0%
CAGTGGGACCAGGATTCAGC+AGG - chr8.4:125048-125067 MS.gene43489:CDS 60.0%
CAGTTGCTCTCCCTTCCCTC+AGG - chr8.4:124178-124197 MS.gene43489:intron 60.0%
GAAAGCCACGACCATGCTGG+AGG - chr8.4:123256-123275 MS.gene43489:CDS 60.0%
GAGAGCAGTGGAGAGAGCAG+TGG - chr8.4:125031-125050 MS.gene43489:CDS 60.0%
GAGCAGCCTGAGGACCCATT+TGG + chr8.4:123672-123691 None:intergenic 60.0%
GTGGAACGAAGAGCAGCCTG+AGG + chr8.4:123682-123701 None:intergenic 60.0%
TACCCCCTTGATGGAGCTGC+AGG - chr8.4:124245-124264 MS.gene43489:intron 60.0%
ACTGCAGGGACGCCAATGCC+AGG + chr8.4:125236-125255 None:intergenic 65.0%
CAGCACCTCCAGCATGGTCG+TGG + chr8.4:123264-123283 None:intergenic 65.0%
GCACCACTGGCAGCAACTGC+AGG + chr8.4:125251-125270 None:intergenic 65.0%
GGGTACTCAAGACAGCCCCC+TGG + chr8.4:124230-124249 None:intergenic 65.0%
GTCCCTGCAGTTGCTGCCAG+TGG - chr8.4:125245-125264 MS.gene43489:CDS 65.0%
GTGGAGAGAGCAGTGGGACC+AGG - chr8.4:125038-125057 MS.gene43489:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 123046 125337 123046 ID=MS.gene43489
chr8.4 mRNA 123046 125337 123046 ID=MS.gene43489.t1;Parent=MS.gene43489
chr8.4 exon 124549 125337 124549 ID=MS.gene43489.t1.exon1;Parent=MS.gene43489.t1
chr8.4 CDS 124549 125337 124549 ID=cds.MS.gene43489.t1;Parent=MS.gene43489.t1
chr8.4 exon 123992 124183 123992 ID=MS.gene43489.t1.exon2;Parent=MS.gene43489.t1
chr8.4 CDS 123992 124183 123992 ID=cds.MS.gene43489.t1;Parent=MS.gene43489.t1
chr8.4 exon 123762 123920 123762 ID=MS.gene43489.t1.exon3;Parent=MS.gene43489.t1
chr8.4 CDS 123762 123920 123762 ID=cds.MS.gene43489.t1;Parent=MS.gene43489.t1
chr8.4 exon 123446 123682 123446 ID=MS.gene43489.t1.exon4;Parent=MS.gene43489.t1
chr8.4 CDS 123446 123682 123446 ID=cds.MS.gene43489.t1;Parent=MS.gene43489.t1
chr8.4 exon 123046 123360 123046 ID=MS.gene43489.t1.exon5;Parent=MS.gene43489.t1
chr8.4 CDS 123046 123360 123046 ID=cds.MS.gene43489.t1;Parent=MS.gene43489.t1
Gene Sequence

>MS.gene43489

ATGAGAGTGAGAAGATACTGTTCAAGAATTGATGATGATCATCATCATAGTCATAGTAATGGGAGGATTAGGAAAGGTGGGGTTGTGGTGCGAAACAGCAGCAACAAAGTAGATGAAACAGAAACAGATGTAATTGTGATTGGGAGTGGTATTGGTGGACTGAGTTGTGCAGCACTGTTGGCAAGATATGAACAAGATGTTGTCGTTTTCGAAAGCCACGACCATGCTGGAGGTGCTGCTCATTCTTTTGATGTCAAAGGCTATAAGTTTGATTCCGGTCCATCATTATTCTCTGGTTTGCAGTCAAGAGGTCCACAGGCTAACCCTCTTGCTCAAGTTCTTGATGCTTTGGGAGAGTCCGTCCCCTGCGCTACTTATGATTCATGGATGGTCCATGTACCTGAAGCTGATTTCTTGTCACGCATAGGTCCTACTGAGTTTTTAAAGGACCTTCACAACTATGCAGGTCCTGAAGCTGTTCAAGAATGGCAGAAGCTTTTGGATGCTGTACTTCCCTTGTCTACAGCTGCAATGGCTCTTCCCCCTCTATCAGTTCGAGGAGATTTCGGTGTTCTTTACACCGCTGCTGCTAGATATGCACCTTCTCTTTTCAATACCTTTTTCCAAATGGGTCCTCAGGCTGCTCTTCGTTCCACACAACTTCTCTCACCTTTTTCCCAAATACTTGACTCTTTGCAACTAAAGAATCCTTTCATACGCAATTGGATTGACTTACTTTCTTTCTTGCTTGCTGGTGTCAAATCTGATAGTATATTGTCTGCAGAGATGGTACTATATTTCACATATCTCCAATTGCCATTACCACTCATCAACGTGCAATCATTTATTTATATCATTACATTATTTACGACCACAATAACTAGTTTCTATCCTCTCTCATTTTTTTGTGCAGATAGATTATTAACAGTGTGCATAACACATAAATCTCTAAAGGGACTTTTGTTAAATTTTGATTCCTGTTGTTTACTTAGAGACAGTAGTAGACTAATTGACCAATTTCATTTCTTAAAAATCACCTAAAAGCAGCAGTTAAATGGATAGAAAACTAACGAAATAGTGCTGGTTGAAACATTAGTGAAACGTCATTGCTAATATTCTATTGATGACAAAACAGTTGCTCTCCCTTCCCTCAGGTTTACATGTTTGCAGAATGGTACAAACCAGGGGGCTGTCTTGAGTACCCCCTTGATGGAGCTGCAGGTATTGTTGATGCTCTTGTACGAGGACTAGAGAAGTTTGGTGGGCGGATTTCTCTTCAAAGTCACGTGGAAAAGATTGTTGTTGAAAATGACAGAGCCATTGGAGTGAAGCTGAGAAGCGGCCAAGTAAGTATATTAATTTTGAATGAATATTGATAAGAAAATATCGACTTTATCATGTGTTATGCTTGCTGCAGTTCGTACATGCCAAGAAGGCTGTTGTGAGCAATGCATCAATGTGGGATACTTTAAAATTGCTCCCTCAAGAAGTTGTTCCAAAGTCTTACTCAAATAGGATTAAGACGACTAGTCAGTGTGAATCTTTCATGCATCTCCATTTGGGATTTGATGCTGAGGTGAGGTTTTGGTGATTAATTTTATTTAGTCTTTCACTTGCCATGCATCTGTTTGAAGTATTCAACATCGAGTGAGCAGGGTATACGCAGCGATCTAGGAATTCATCATATAGTTGTAAATGATTGGGAAAGAGGAGTTGACGCAGATCAGAATGTTGTGTTGATATCAGTTCCTAGTGTACTTACTCCTAATCTGGCACCTACTGGGAAACATGTGTTACATGCTTATCTTCCAGGAACTGAACCATTTGAGTTGTGGGAAGGACTTGATCGTAAGAGTGCCGAATACAGAAATCTTAAAGCTCAAAGATCAGAGGTATATATGAAATTGAATGAATGAATAACAGCAAGCAGCGTATATGCGTTTTTAATTAATGATTATTATTTCAAACAACAAATAGATAATGTGGAGAGCAGTGGAGAGAGCAGTGGGACCAGGATTCAGCAGGGAGAAATGTGAAGTGAAGTTAGTTGGAAGTCCACTCACACATCAAAGGTTTCTTCGGAGGAACAGAGGAACATATGGACCAGCTATACAAGCTGGTACAGATACCTTTCCTGGACATTCAACTCCAATTCCACACCTTTATTGTTGTGGAGACTCCACTTTTCCTGGCATTGGCGTCCCTGCAGTTGCTGCCAGTGGTGCAATTGTAGCTAATTCTCTAGTTTCAGTGTCTCAGCATTCCCAGCTGCTTGATGCAATTGGAATTTGA

Protein sequence

>MS.gene43489.t1

MRVRRYCSRIDDDHHHSHSNGRIRKGGVVVRNSSNKVDETETDVIVIGSGIGGLSCAALLARYEQDVVVFESHDHAGGAAHSFDVKGYKFDSGPSLFSGLQSRGPQANPLAQVLDALGESVPCATYDSWMVHVPEADFLSRIGPTEFLKDLHNYAGPEAVQEWQKLLDAVLPLSTAAMALPPLSVRGDFGVLYTAAARYAPSLFNTFFQMGPQAALRSTQLLSPFSQILDSLQLKNPFIRNWIDLLSFLLAGVKSDSILSAEMVYMFAEWYKPGGCLEYPLDGAAGIVDALVRGLEKFGGRISLQSHVEKIVVENDRAIGVKLRSGQFVHAKKAVVSNASMWDTLKLLPQEVVPKSYSNRIKTTSQCESFMHLHLGFDAEGIRSDLGIHHIVVNDWERGVDADQNVVLISVPSVLTPNLAPTGKHVLHAYLPGTEPFELWEGLDRKSAEYRNLKAQRSEIMWRAVERAVGPGFSREKCEVKLVGSPLTHQRFLRRNRGTYGPAIQAGTDTFPGHSTPIPHLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHSQLLDAIGI