Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059499.t1 | XP_003607898.1 | 97.8 | 180 | 4 | 0 | 2 | 181 | 3 | 182 | 1.30E-92 | 349 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059499.t1 | P42856 | 69.3 | 127 | 39 | 0 | 55 | 181 | 2 | 128 | 6.6e-48 | 191.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059499.t1 | Q2MGQ9 | 97.8 | 180 | 4 | 0 | 2 | 181 | 3 | 182 | 9.7e-93 | 349.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050670 | MS.gene059499 | 0.801586 | 8.39E-49 | -1.69E-46 |
| MS.gene051525 | MS.gene059499 | 0.840976 | 6.29E-58 | -1.69E-46 |
| MS.gene052505 | MS.gene059499 | 0.806896 | 6.59E-50 | -1.69E-46 |
| MS.gene052982 | MS.gene059499 | 0.818973 | 1.48E-52 | -1.69E-46 |
| MS.gene053318 | MS.gene059499 | 0.803535 | 3.33E-49 | -1.69E-46 |
| MS.gene055369 | MS.gene059499 | 0.806753 | 7.06E-50 | -1.69E-46 |
| MS.gene05594 | MS.gene059499 | 0.812418 | 4.28E-51 | -1.69E-46 |
| MS.gene056877 | MS.gene059499 | 0.802728 | 4.89E-49 | -1.69E-46 |
| MS.gene057476 | MS.gene059499 | 0.810408 | 1.17E-50 | -1.69E-46 |
| MS.gene058444 | MS.gene059499 | 0.804433 | 2.17E-49 | -1.69E-46 |
| MS.gene058700 | MS.gene059499 | 0.823622 | 1.25E-53 | -1.69E-46 |
| MS.gene059498 | MS.gene059499 | 0.822224 | 2.66E-53 | -1.69E-46 |
| MS.gene059499 | MS.gene059501 | 0.80601 | 1.01E-49 | -1.69E-46 |
| MS.gene059499 | MS.gene059502 | 0.989982 | 1.60E-180 | -1.69E-46 |
| MS.gene059499 | MS.gene059504 | 0.895481 | 9.20E-76 | -1.69E-46 |
| MS.gene059499 | MS.gene065996 | 0.812418 | 4.28E-51 | -1.69E-46 |
| MS.gene059499 | MS.gene066847 | 0.805046 | 1.61E-49 | -1.69E-46 |
| MS.gene059499 | MS.gene068064 | 0.814304 | 1.65E-51 | -1.69E-46 |
| MS.gene059499 | MS.gene070279 | 0.807298 | 5.41E-50 | -1.69E-46 |
| MS.gene059499 | MS.gene070746 | 0.800666 | 1.29E-48 | -1.69E-46 |
| MS.gene059499 | MS.gene09953 | 0.80802 | 3.80E-50 | -1.69E-46 |
| MS.gene059499 | MS.gene20025 | 0.816755 | 4.70E-52 | -1.69E-46 |
| MS.gene059499 | MS.gene22764 | 0.806993 | 6.28E-50 | -1.69E-46 |
| MS.gene059499 | MS.gene27100 | 0.800512 | 1.39E-48 | -1.69E-46 |
| MS.gene059499 | MS.gene27117 | 0.801291 | 9.65E-49 | -1.69E-46 |
| MS.gene059499 | MS.gene29833 | 0.835939 | 1.25E-56 | -1.69E-46 |
| MS.gene059499 | MS.gene39277 | 0.801781 | 7.66E-49 | -1.69E-46 |
| MS.gene059499 | MS.gene39429 | 0.808447 | 3.08E-50 | -1.69E-46 |
| MS.gene059499 | MS.gene43489 | 0.805056 | 1.60E-49 | -1.69E-46 |
| MS.gene059499 | MS.gene43562 | 0.800223 | 1.59E-48 | -1.69E-46 |
| MS.gene059499 | MS.gene47873 | 0.804406 | 2.19E-49 | -1.69E-46 |
| MS.gene059499 | MS.gene57947 | 0.809475 | 1.86E-50 | -1.69E-46 |
| MS.gene059499 | MS.gene72540 | 0.810553 | 1.09E-50 | -1.69E-46 |
| MS.gene059499 | MS.gene88173 | 0.822806 | 1.94E-53 | -1.69E-46 |
| MS.gene059499 | MS.gene95706 | 0.826001 | 3.45E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059499.t1 | MTR_4g084190 | 97.778 | 180 | 4 | 0 | 2 | 181 | 3 | 182 | 7.42e-131 | 364 |
| MS.gene059499.t1 | MTR_4g084190 | 93.617 | 188 | 4 | 1 | 2 | 181 | 3 | 190 | 1.02e-127 | 357 |
| MS.gene059499.t1 | MTR_4g084190 | 96.639 | 119 | 4 | 0 | 2 | 120 | 3 | 121 | 3.46e-80 | 234 |
| MS.gene059499.t1 | MTR_6g026810 | 64.964 | 137 | 48 | 0 | 45 | 181 | 17 | 153 | 4.04e-67 | 202 |
| MS.gene059499.t1 | MTR_7g088160 | 53.521 | 71 | 31 | 2 | 53 | 121 | 4 | 74 | 3.83e-17 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059499.t1 | AT1G31160 | 69.663 | 178 | 49 | 2 | 9 | 181 | 10 | 187 | 6.74e-75 | 223 |
| MS.gene059499.t1 | AT3G56490 | 65.926 | 135 | 44 | 1 | 47 | 181 | 15 | 147 | 8.36e-65 | 196 |
| MS.gene059499.t1 | AT1G31160 | 63.248 | 117 | 38 | 2 | 9 | 120 | 10 | 126 | 1.75e-31 | 111 |
Find 45 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAATCCATCTCTGAATTT+TGG | 0.116683 | 4.3:+27665535 | None:intergenic |
| TTCTTTCTCGGCTACTATTT+TGG | 0.146644 | 4.3:+27665235 | None:intergenic |
| CGGTTCCTTTCTCTCTTCTT+AGG | 0.195364 | 4.3:-27667259 | MS.gene059499:intron |
| TGCTAGACATGGGGAGATAC+TGG | 0.286551 | 4.3:-27665276 | MS.gene059499:CDS |
| TTTGTTGCGCTGGCGCTAAA+AGG | 0.344972 | 4.3:+27666058 | None:intergenic |
| AGCATTAACAGCAGCTGCTT+TGG | 0.346160 | 4.3:+27666018 | None:intergenic |
| ATTTGACAAGATCATAAATA+AGG | 0.353101 | 4.3:-27665647 | MS.gene059499:CDS |
| AATTACCTGCGACTTTGAAT+AGG | 0.381269 | 4.3:+27667084 | None:intergenic |
| ATCAGCGATACCTTCTTTCT+CGG | 0.398686 | 4.3:+27665223 | None:intergenic |
| ACAGGCTCCGGTTCATGTTC+TGG | 0.408262 | 4.3:-27665563 | MS.gene059499:CDS |
| TTGTTCATTGTTTGTTGCGC+TGG | 0.410590 | 4.3:+27666048 | None:intergenic |
| AGAGATGGATTAACAGAACT+TGG | 0.427247 | 4.3:-27665526 | MS.gene059499:CDS |
| TAGGTGGGAGACAGATGAAT+TGG | 0.451270 | 4.3:-27665031 | MS.gene059499:CDS |
| TTGCAGGAACTACTCACAAT+TGG | 0.452153 | 4.3:-27667166 | MS.gene059499:intron |
| TCTTCATATACAATGCTTGA+AGG | 0.456414 | 4.3:+27665619 | None:intergenic |
| GGAATGACCAGAACATGAAC+CGG | 0.476627 | 4.3:+27665556 | None:intergenic |
| GGACATCAGTCCACAGGCTC+CGG | 0.500682 | 4.3:-27665575 | MS.gene059499:CDS |
| CATTGTATATGAAGATGAAA+AGG | 0.504283 | 4.3:-27665611 | MS.gene059499:CDS |
| TTCTTCCTATTCAAAGTCGC+AGG | 0.517238 | 4.3:-27667089 | MS.gene059499:intron |
| CATCTGCACTTGCATGTCCT+AGG | 0.526980 | 4.3:-27665050 | MS.gene059499:CDS |
| CTTCATATACAATGCTTGAA+GGG | 0.529749 | 4.3:+27665620 | None:intergenic |
| GTCATTCCAAAATTCAGAGA+TGG | 0.530580 | 4.3:-27665541 | MS.gene059499:CDS |
| GCTGCTGTTAATGCTGATAG+TGG | 0.535440 | 4.3:-27666010 | MS.gene059499:CDS |
| CTGCACTTGCATGTCCTAGG+TGG | 0.538200 | 4.3:-27665047 | MS.gene059499:CDS |
| TCTAGCAACCATGGCAGCTA+CGG | 0.539151 | 4.3:-27667279 | None:intergenic |
| GTTTAATGTTGATACATTGT+CGG | 0.541470 | 4.3:+27665983 | None:intergenic |
| TGTTACCTAAGAAGAGAGAA+AGG | 0.545840 | 4.3:+27667254 | None:intergenic |
| AAAATAGTAGCCGAGAAAGA+AGG | 0.558191 | 4.3:-27665233 | MS.gene059499:CDS |
| GAGAAAGAAGGTATCGCTGA+TGG | 0.560682 | 4.3:-27665221 | MS.gene059499:CDS |
| GAAAGGAACCGTAGCTGCCA+TGG | 0.563604 | 4.3:+27667271 | None:intergenic |
| GCTAGACATGGGGAGATACT+GGG | 0.568863 | 4.3:-27665275 | MS.gene059499:CDS |
| AGTGCAGATGATACACACTT+TGG | 0.574867 | 4.3:+27665063 | None:intergenic |
| AGACAGATGAATTGGCCACC+TGG | 0.582532 | 4.3:-27665023 | MS.gene059499:CDS |
| GAGATGGATTAACAGAACTT+GGG | 0.585175 | 4.3:-27665525 | MS.gene059499:CDS |
| TTGCAGGCTGATGCTAGACA+TGG | 0.589421 | 4.3:-27665287 | MS.gene059499:intron |
| TGCACTTGCATGTCCTAGGT+GGG | 0.590386 | 4.3:-27665046 | MS.gene059499:CDS |
| GCAAGGATTGACATTCAACC+AGG | 0.602800 | 4.3:+27665005 | None:intergenic |
| GACTGATGTCCCGAAAAGCT+AGG | 0.605770 | 4.3:+27665587 | None:intergenic |
| TGCAGGCTGATGCTAGACAT+GGG | 0.607182 | 4.3:-27665286 | MS.gene059499:intron |
| AATTCATCTGTCTCCCACCT+AGG | 0.607223 | 4.3:+27665033 | None:intergenic |
| AGAACATGAACCGGAGCCTG+TGG | 0.626518 | 4.3:+27665565 | None:intergenic |
| TGGATTAACAGAACTTGGGA+AGG | 0.640825 | 4.3:-27665521 | MS.gene059499:intron |
| TTTCGTGTTGTCATCAACAG+TGG | 0.675033 | 4.3:-27665197 | MS.gene059499:CDS |
| GCAGGCTGATGCTAGACATG+GGG | 0.678497 | 4.3:-27665285 | MS.gene059499:intron |
| AGGATTGACATTCAACCAGG+TGG | 0.710391 | 4.3:+27665008 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAATAAAATAGAATTATT+GGG | + | chr4.3:27666613-27666632 | None:intergenic | 10.0% |
| !! | TACACTAATTTATTATATAA+GGG | - | chr4.3:27666847-27666866 | MS.gene059499:intron | 10.0% |
| !! | ACACTAATTTATTATATAAG+GGG | - | chr4.3:27666848-27666867 | MS.gene059499:intron | 15.0% |
| !! | GAAGAATAAAATAGAATTAT+TGG | + | chr4.3:27666614-27666633 | None:intergenic | 15.0% |
| !! | GTACACTAATTTATTATATA+AGG | - | chr4.3:27666846-27666865 | MS.gene059499:intron | 15.0% |
| !! | GTGAATAAAATAATAAAAGT+TGG | - | chr4.3:27665292-27665311 | MS.gene059499:intron | 15.0% |
| !! | TATACTGAAATTTATTGTTA+TGG | + | chr4.3:27665507-27665526 | None:intergenic | 15.0% |
| !! | AAGAAGACAAAAAAGATAAT+GGG | + | chr4.3:27666133-27666152 | None:intergenic | 20.0% |
| !! | ATTTGACAAGATCATAAATA+AGG | - | chr4.3:27666641-27666660 | MS.gene059499:intron | 20.0% |
| !!! | AGATTTAAAGTTTAAATGCT+CGG | - | chr4.3:27666439-27666458 | MS.gene059499:intron | 20.0% |
| !!! | CTTCAAGTTAAAATAAGTTA+TGG | - | chr4.3:27665561-27665580 | MS.gene059499:CDS | 20.0% |
| !!! | TGAATTTTTTATGATCTGTA+AGG | - | chr4.3:27665241-27665260 | MS.gene059499:CDS | 20.0% |
| ! | AATAAGAAAAACGAGATTAG+TGG | + | chr4.3:27667197-27667216 | None:intergenic | 25.0% |
| ! | ATAAGAAAAACGAGATTAGT+GGG | + | chr4.3:27667196-27667215 | None:intergenic | 25.0% |
| ! | ATAAGATACCATACCATTAT+TGG | + | chr4.3:27667164-27667183 | None:intergenic | 25.0% |
| ! | CATTGTATATGAAGATGAAA+AGG | - | chr4.3:27666677-27666696 | MS.gene059499:intron | 25.0% |
| ! | GAAGAAGACAAAAAAGATAA+TGG | + | chr4.3:27666134-27666153 | None:intergenic | 25.0% |
| ! | GATTAGAAAAAAGAACATAC+AGG | + | chr4.3:27667125-27667144 | None:intergenic | 25.0% |
| ! | GTTTAATGTTGATACATTGT+CGG | + | chr4.3:27666308-27666327 | None:intergenic | 25.0% |
| ! | TATAACTTCAAAACAGATTC+TGG | + | chr4.3:27666098-27666117 | None:intergenic | 25.0% |
| ! | TCTATATGTACATTAACTCA+AGG | - | chr4.3:27666803-27666822 | MS.gene059499:intron | 25.0% |
| ! | TTAGTTCAAATGCGAAAAAT+TGG | - | chr4.3:27665713-27665732 | MS.gene059499:intron | 25.0% |
| !! | AAAGTAGCTAGAATTGATTT+CGG | + | chr4.3:27665646-27665665 | None:intergenic | 25.0% |
| !! | AATTTGTGTTGTTAATGAGA+TGG | - | chr4.3:27665267-27665286 | MS.gene059499:CDS | 25.0% |
| !! | ACAAAAAAGATCCTTTTCTA+AGG | + | chr4.3:27665992-27666011 | None:intergenic | 25.0% |
| !! | GTTGAACTTGAACAAATTTT+TGG | + | chr4.3:27665902-27665921 | None:intergenic | 25.0% |
| !!! | CTATTTCTAATAATGTTGCT+TGG | - | chr4.3:27665958-27665977 | MS.gene059499:intron | 25.0% |
| !!! | TGGATAACCTTGTTTTTTAT+TGG | - | chr4.3:27665760-27665779 | MS.gene059499:intron | 25.0% |
| !!! | TGTTAGCTTTGAGTTATTAA+TGG | - | chr4.3:27666921-27666940 | MS.gene059499:intron | 25.0% |
| !!! | TTTATTGACTTAGTGTGAAT+TGG | - | chr4.3:27666172-27666191 | MS.gene059499:intron | 25.0% |
| !!! | TTTTTTGTCTTCTTCATGTT+TGG | - | chr4.3:27666139-27666158 | MS.gene059499:intron | 25.0% |
| AAAGAGAGAACCAATCTATT+TGG | - | chr4.3:27666510-27666529 | MS.gene059499:intron | 30.0% | |
| AACAAGGTAACAACTTACTT+TGG | + | chr4.3:27665827-27665846 | None:intergenic | 30.0% | |
| AACTTACTTTGGACAAACAA+AGG | + | chr4.3:27665816-27665835 | None:intergenic | 30.0% | |
| ACAATTTCCATTGCCAATAA+TGG | - | chr4.3:27667148-27667167 | MS.gene059499:CDS | 30.0% | |
| AGGTTATCCAAACATGAATT+AGG | + | chr4.3:27665750-27665769 | None:intergenic | 30.0% | |
| CAAAAAAAAACTGCATTTGC+AGG | - | chr4.3:27666985-27667004 | MS.gene059499:intron | 30.0% | |
| CTTCATATACAATGCTTGAA+GGG | + | chr4.3:27666671-27666690 | None:intergenic | 30.0% | |
| GTTTATGTTTGTGTGCATTT+AGG | - | chr4.3:27665467-27665486 | MS.gene059499:intron | 30.0% | |
| TCTTCATATACAATGCTTGA+AGG | + | chr4.3:27666672-27666691 | None:intergenic | 30.0% | |
| TTCCTTACATAGTAGTAACA+GGG | - | chr4.3:27666948-27666967 | MS.gene059499:intron | 30.0% | |
| TTGCATCATGTCTAATAACA+AGG | + | chr4.3:27665843-27665862 | None:intergenic | 30.0% | |
| TTTCCTTACATAGTAGTAAC+AGG | - | chr4.3:27666947-27666966 | MS.gene059499:intron | 30.0% | |
| TTTCTACCTTCCAAATAGAT+TGG | + | chr4.3:27666523-27666542 | None:intergenic | 30.0% | |
| ! | GTTAATCCATCTCTGAATTT+TGG | + | chr4.3:27666756-27666775 | None:intergenic | 30.0% |
| ! | TCTAATAATGTTGCTTGGAT+CGG | - | chr4.3:27665963-27665982 | MS.gene059499:intron | 30.0% |
| ! | TCTTGCTTTGTATAATTTGC+AGG | - | chr4.3:27665106-27665125 | MS.gene059499:intron | 30.0% |
| AAAAAAGAACATACAGGCAC+TGG | + | chr4.3:27667119-27667138 | None:intergenic | 35.0% | |
| AAAATAGTAGCCGAGAAAGA+AGG | - | chr4.3:27667055-27667074 | MS.gene059499:intron | 35.0% | |
| AAACATTCGACCAATGTTGA+AGG | - | chr4.3:27666550-27666569 | MS.gene059499:intron | 35.0% | |
| AATTACCTGCGACTTTGAAT+AGG | + | chr4.3:27665207-27665226 | None:intergenic | 35.0% | |
| AGAGAACCAATCTATTTGGA+AGG | - | chr4.3:27666514-27666533 | MS.gene059499:intron | 35.0% | |
| ATTAGACATGATGCAACTAC+TGG | - | chr4.3:27665847-27665866 | MS.gene059499:intron | 35.0% | |
| ATTGCATTTCAGTGCATGTT+TGG | - | chr4.3:27665364-27665383 | MS.gene059499:intron | 35.0% | |
| CAGAAAGATAAGCATTCAGT+GGG | + | chr4.3:27666330-27666349 | None:intergenic | 35.0% | |
| GTCATTCCAAAATTCAGAGA+TGG | - | chr4.3:27666747-27666766 | MS.gene059499:intron | 35.0% | |
| TAACAAGCTCTACCAAAACT+TGG | + | chr4.3:27666071-27666090 | None:intergenic | 35.0% | |
| TACCATACCATTATTGGCAA+TGG | + | chr4.3:27667158-27667177 | None:intergenic | 35.0% | |
| TCAGAAAGATAAGCATTCAG+TGG | + | chr4.3:27666331-27666350 | None:intergenic | 35.0% | |
| TCAGCTGCCAATAAAAAACA+AGG | + | chr4.3:27665770-27665789 | None:intergenic | 35.0% | |
| TCTGCAACCTAATTCATGTT+TGG | - | chr4.3:27665740-27665759 | MS.gene059499:intron | 35.0% | |
| TGTTACCTAAGAAGAGAGAA+AGG | + | chr4.3:27665037-27665056 | None:intergenic | 35.0% | |
| TTCCATTGCCAATAATGGTA+TGG | - | chr4.3:27667153-27667172 | MS.gene059499:CDS | 35.0% | |
| ! | GCATTTTGCTTACTTGTTTC+AGG | - | chr4.3:27666204-27666223 | MS.gene059499:intron | 35.0% |
| ! | TAGTGTGAATTGGTGTTTGT+TGG | - | chr4.3:27666182-27666201 | MS.gene059499:intron | 35.0% |
| ! | TCAACATTGGTCGAATGTTT+TGG | + | chr4.3:27666550-27666569 | None:intergenic | 35.0% |
| ! | TTCTTTCTCGGCTACTATTT+TGG | + | chr4.3:27667056-27667075 | None:intergenic | 35.0% |
| !! | AGAGATGGATTAACAGAACT+TGG | - | chr4.3:27666762-27666781 | MS.gene059499:intron | 35.0% |
| !! | ATGAAAAGGTCCTAGCTTTT+CGG | - | chr4.3:27666691-27666710 | MS.gene059499:intron | 35.0% |
| !! | CACATTTCTGAGACTATGTT+TGG | + | chr4.3:27665679-27665698 | None:intergenic | 35.0% |
| !! | CGGAGGTGTAAAATTGATTT+TGG | + | chr4.3:27665626-27665645 | None:intergenic | 35.0% |
| !! | CTCGTTTTTCTTATTCTGCT+AGG | - | chr4.3:27667202-27667221 | MS.gene059499:intron | 35.0% |
| !! | GAGATGGATTAACAGAACTT+GGG | - | chr4.3:27666763-27666782 | MS.gene059499:intron | 35.0% |
| AGTGCAGATGATACACACTT+TGG | + | chr4.3:27667228-27667247 | None:intergenic | 40.0% | |
| ATCAGCGATACCTTCTTTCT+CGG | + | chr4.3:27667068-27667087 | None:intergenic | 40.0% | |
| CACAATCAAACAACAGCACA+TGG | + | chr4.3:27665924-27665943 | None:intergenic | 40.0% | |
| CTCCCTGTTACTACTATGTA+AGG | + | chr4.3:27666953-27666972 | None:intergenic | 40.0% | |
| CTGTGTTAAAGAGAGAGAGA+GGG | + | chr4.3:27666585-27666604 | None:intergenic | 40.0% | |
| TCTGTGTTAAAGAGAGAGAG+AGG | + | chr4.3:27666586-27666605 | None:intergenic | 40.0% | |
| TGGATCGGATACCTTAGAAA+AGG | - | chr4.3:27665978-27665997 | MS.gene059499:intron | 40.0% | |
| TGGATTAACAGAACTTGGGA+AGG | - | chr4.3:27666767-27666786 | MS.gene059499:intron | 40.0% | |
| TTCTTCCTATTCAAAGTCGC+AGG | - | chr4.3:27665199-27665218 | MS.gene059499:CDS | 40.0% | |
| TTGCAGGAACTACTCACAAT+TGG | - | chr4.3:27665122-27665141 | MS.gene059499:intron | 40.0% | |
| TTTCGTGTTGTCATCAACAG+TGG | - | chr4.3:27667091-27667110 | MS.gene059499:CDS | 40.0% | |
| ! | GTAGCTAGAATTGATTTCGG+AGG | + | chr4.3:27665643-27665662 | None:intergenic | 40.0% |
| ! | TTGTTCATTGTTTGTTGCGC+TGG | + | chr4.3:27666243-27666262 | None:intergenic | 40.0% |
| ! | TTTTGTGTGTCTGCACTGTT+AGG | - | chr4.3:27666006-27666025 | MS.gene059499:CDS | 40.0% |
| !! | TGAAAAGGTCCTAGCTTTTC+GGG | - | chr4.3:27666692-27666711 | MS.gene059499:intron | 40.0% |
| !! | TTTCTCGGCTACTATTTTGG+CGG | + | chr4.3:27667053-27667072 | None:intergenic | 40.0% |
| !!! | TCAGTGCATGTTTGGTTTTG+AGG | - | chr4.3:27665372-27665391 | MS.gene059499:intron | 40.0% |
| AATTCATCTGTCTCCCACCT+AGG | + | chr4.3:27667258-27667277 | None:intergenic | 45.0% | |
| AGCATTAACAGCAGCTGCTT+TGG | + | chr4.3:27666273-27666292 | None:intergenic | 45.0% | |
| CGGTTCCTTTCTCTCTTCTT+AGG | - | chr4.3:27665029-27665048 | MS.gene059499:CDS | 45.0% | |
| GCTGCTGTTAATGCTGATAG+TGG | - | chr4.3:27666278-27666297 | MS.gene059499:intron | 45.0% | |
| GGAATGACCAGAACATGAAC+CGG | + | chr4.3:27666735-27666754 | None:intergenic | 45.0% | |
| TAGGTGGGAGACAGATGAAT+TGG | - | chr4.3:27667257-27667276 | MS.gene059499:intron | 45.0% | |
| ! | TGTCATCCAGCACCAAGTTT+TGG | - | chr4.3:27666056-27666075 | MS.gene059499:CDS | 45.0% |
| !! | GAGAAAGAAGGTATCGCTGA+TGG | - | chr4.3:27667067-27667086 | MS.gene059499:intron | 45.0% |
| AGACAGATGAATTGGCCACC+TGG | - | chr4.3:27667265-27667284 | MS.gene059499:CDS | 50.0% | |
| CATCTGCACTTGCATGTCCT+AGG | - | chr4.3:27667238-27667257 | MS.gene059499:intron | 50.0% | |
| GACTGATGTCCCGAAAAGCT+AGG | + | chr4.3:27666704-27666723 | None:intergenic | 50.0% | |
| GCACTTCAGGCCTTCAACAT+TGG | + | chr4.3:27666563-27666582 | None:intergenic | 50.0% | |
| GCTAGACATGGGGAGATACT+GGG | - | chr4.3:27667013-27667032 | MS.gene059499:intron | 50.0% | |
| TGCACTTGCATGTCCTAGGT+GGG | - | chr4.3:27667242-27667261 | MS.gene059499:intron | 50.0% | |
| TGCAGGCTGATGCTAGACAT+GGG | - | chr4.3:27667002-27667021 | MS.gene059499:intron | 50.0% | |
| TGCTAGACATGGGGAGATAC+TGG | - | chr4.3:27667012-27667031 | MS.gene059499:intron | 50.0% | |
| TTGCAGGCTGATGCTAGACA+TGG | - | chr4.3:27667001-27667020 | MS.gene059499:intron | 50.0% | |
| ! | TTTGTTGCGCTGGCGCTAAA+AGG | + | chr4.3:27666233-27666252 | None:intergenic | 50.0% |
| !! | GCTCTACCAAAACTTGGTGC+TGG | + | chr4.3:27666065-27666084 | None:intergenic | 50.0% |
| !! | TTTTCGGGACATCAGTCCAC+AGG | - | chr4.3:27666707-27666726 | MS.gene059499:intron | 50.0% |
| ACAGGCTCCGGTTCATGTTC+TGG | - | chr4.3:27666725-27666744 | MS.gene059499:intron | 55.0% | |
| AGAACATGAACCGGAGCCTG+TGG | + | chr4.3:27666726-27666745 | None:intergenic | 55.0% | |
| CTGCACTTGCATGTCCTAGG+TGG | - | chr4.3:27667241-27667260 | MS.gene059499:intron | 55.0% | |
| GCAGGCTGATGCTAGACATG+GGG | - | chr4.3:27667003-27667022 | MS.gene059499:intron | 55.0% | |
| !! | AGAGAGAGAGAGGGCACTTC+AGG | + | chr4.3:27666576-27666595 | None:intergenic | 55.0% |
| GGACATCAGTCCACAGGCTC+CGG | - | chr4.3:27666713-27666732 | MS.gene059499:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 27665019 | 27667291 | 27665019 | ID=MS.gene059499 |
| chr4.3 | mRNA | 27665019 | 27667291 | 27665019 | ID=MS.gene059499.t1;Parent=MS.gene059499 |
| chr4.3 | exon | 27667260 | 27667291 | 27667260 | ID=MS.gene059499.t1.exon1;Parent=MS.gene059499.t1 |
| chr4.3 | CDS | 27667260 | 27667291 | 27667260 | ID=cds.MS.gene059499.t1;Parent=MS.gene059499.t1 |
| chr4.3 | exon | 27667090 | 27667182 | 27667090 | ID=MS.gene059499.t1.exon2;Parent=MS.gene059499.t1 |
| chr4.3 | CDS | 27667090 | 27667182 | 27667090 | ID=cds.MS.gene059499.t1;Parent=MS.gene059499.t1 |
| chr4.3 | exon | 27665998 | 27666084 | 27665998 | ID=MS.gene059499.t1.exon3;Parent=MS.gene059499.t1 |
| chr4.3 | CDS | 27665998 | 27666084 | 27665998 | ID=cds.MS.gene059499.t1;Parent=MS.gene059499.t1 |
| chr4.3 | exon | 27665522 | 27665669 | 27665522 | ID=MS.gene059499.t1.exon4;Parent=MS.gene059499.t1 |
| chr4.3 | CDS | 27665522 | 27665669 | 27665522 | ID=cds.MS.gene059499.t1;Parent=MS.gene059499.t1 |
| chr4.3 | exon | 27665186 | 27665303 | 27665186 | ID=MS.gene059499.t1.exon5;Parent=MS.gene059499.t1 |
| chr4.3 | CDS | 27665186 | 27665303 | 27665186 | ID=cds.MS.gene059499.t1;Parent=MS.gene059499.t1 |
| chr4.3 | exon | 27665019 | 27665086 | 27665019 | ID=MS.gene059499.t1.exon6;Parent=MS.gene059499.t1 |
| chr4.3 | CDS | 27665019 | 27665086 | 27665019 | ID=cds.MS.gene059499.t1;Parent=MS.gene059499.t1 |
| Gene Sequence |
| Protein sequence |
