AlfalfaGEDB | MS.gene065996

M. sativa cultivar XinJiangDaYe / MS.gene065996

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005575 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016072 GO:0034470 GO:0034641 GO:0034660 GO:0043021 GO:0043022 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044877 GO:0046483 GO:0071704 GO:0090304 GO:0110165 GO:1901360
PFAM: PF01782.21 PF05239.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065996.t1	XP_003629892.2	93.1	663	30	5	1	653	1	657	0.00E+00	1187.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065996.t1	B2J3X9	40.5	195	100	5	67	261	56	234	6.7e-34	147.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065996.t1	G7L811	93.1	663	30	5	1	653	1	657	0.0e+00	1187.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene065996	0.866957	1.95E-65	-1.69E-46
MS.gene049171	MS.gene065996	0.844697	6.44E-59	-1.69E-46
MS.gene049217	MS.gene065996	0.815103	1.10E-51	-1.69E-46
MS.gene049222	MS.gene065996	0.879771	9.49E-70	-1.69E-46
MS.gene049232	MS.gene065996	0.805121	1.56E-49	-1.69E-46
MS.gene049257	MS.gene065996	0.802502	5.44E-49	-1.69E-46
MS.gene049285	MS.gene065996	0.819437	1.16E-52	-1.69E-46
MS.gene049320	MS.gene065996	0.809917	1.49E-50	-1.69E-46
MS.gene049356	MS.gene065996	0.811038	8.55E-51	-1.69E-46
MS.gene049427	MS.gene065996	0.841617	4.26E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065996.t1	MTR_8g088030	94.570	663	20	5	1	653	1	657	0.0	1262

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065996.t1	AT5G46420	46.418	670	304	13	8	651	11	651	0.0	563

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Find 132 sgRNAs with CRISPR-Local

Find 438 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGCCTCCAAGTGAAGT+AGG	0.526836	4.3:-13080951	None:intergenic
AAATGCATGTCCGTTGGATA+AGG	0.395274	4.3:+13087489	MS.gene065996:CDS
AAATTCACTACTTGTTGGGT+TGG	0.511864	4.3:+13087222	MS.gene065996:CDS
AAATTGAGCTTGAAGAAGGT+AGG	0.587798	4.3:+13081240	MS.gene065996:CDS
AACAACAACAGGTTCGTGGT+GGG	0.657439	4.3:-13081048	None:intergenic
AACACTCTGGACAAAATTGT+TGG	0.474118	4.3:+13081264	MS.gene065996:CDS
AACTCCAAAAGTCCCTTGGG+CGG	0.640296	4.3:-13083102	None:intergenic
AACTGGAAGTAAAACCAAGT+TGG	0.577834	4.3:+13084666	MS.gene065996:CDS
AAGATAGCTCGTATGAGTTT+GGG	0.348468	4.3:-13087447	None:intergenic
AAGTGCCTCCAAGTGAAGTA+GGG	0.573657	4.3:-13080950	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATCATCCAAGTAGAAA+AGG	-	chr4.3:13085137-13085156	None:intergenic	30.0%
AAGGTAGTAGTATTAGTTAG+GGG	-	chr4.3:13085905-13085924	None:intergenic	30.0%
AATAAAGGAATTTGTCTTGG+CGG	-	chr4.3:13087386-13087405	None:intergenic	30.0%
AATATGGGGAAAACCAAAAA+AGG	-	chr4.3:13081906-13081925	None:intergenic	30.0%
AATGATACAGGTGAAGATAT+TGG	-	chr4.3:13083598-13083617	None:intergenic	30.0%
AATTTCCGTGATTCAAAAGT+TGG	+	chr4.3:13087043-13087062	MS.gene065996:intron	30.0%
ACAAGGTAGTAGTATTAGTT+AGG	-	chr4.3:13085907-13085926	None:intergenic	30.0%
ACCAAAAGCAACAATTCAAT+CGG	-	chr4.3:13086667-13086686	None:intergenic	30.0%
ACGGAAATTCCAGAATATAA+TGG	-	chr4.3:13087032-13087051	None:intergenic	30.0%
ACTATACAAACCTTATCCAA+CGG	-	chr4.3:13087502-13087521	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	13080894	13087537	13080894	ID=MS.gene065996
chr4.3	mRNA	13080894	13087537	13080894	ID=MS.gene065996.t1;Parent=MS.gene065996
chr4.3	exon	13080894	13081322	13080894	ID=MS.gene065996.t1.exon1;Parent=MS.gene065996.t1
chr4.3	CDS	13080894	13081322	13080894	ID=cds.MS.gene065996.t1;Parent=MS.gene065996.t1
chr4.3	exon	13082273	13082383	13082273	ID=MS.gene065996.t1.exon2;Parent=MS.gene065996.t1
chr4.3	CDS	13082273	13082383	13082273	ID=cds.MS.gene065996.t1;Parent=MS.gene065996.t1
chr4.3	exon	13082886	13083170	13082886	ID=MS.gene065996.t1.exon3;Parent=MS.gene065996.t1
chr4.3	CDS	13082886	13083170	13082886	ID=cds.MS.gene065996.t1;Parent=MS.gene065996.t1
chr4.3	exon	13083739	13083942	13083739	ID=MS.gene065996.t1.exon4;Parent=MS.gene065996.t1
chr4.3	CDS	13083739	13083942	13083739	ID=cds.MS.gene065996.t1;Parent=MS.gene065996.t1
chr4.3	exon	13084604	13084885	13084604	ID=MS.gene065996.t1.exon5;Parent=MS.gene065996.t1
chr4.3	CDS	13084604	13084885	13084604	ID=cds.MS.gene065996.t1;Parent=MS.gene065996.t1
chr4.3	exon	13085301	13085411	13085301	ID=MS.gene065996.t1.exon6;Parent=MS.gene065996.t1
chr4.3	CDS	13085301	13085411	13085301	ID=cds.MS.gene065996.t1;Parent=MS.gene065996.t1
chr4.3	exon	13086266	13086457	13086266	ID=MS.gene065996.t1.exon7;Parent=MS.gene065996.t1
chr4.3	CDS	13086266	13086457	13086266	ID=cds.MS.gene065996.t1;Parent=MS.gene065996.t1
chr4.3	exon	13087190	13087537	13087190	ID=MS.gene065996.t1.exon8;Parent=MS.gene065996.t1
chr4.3	CDS	13087190	13087537	13087190	ID=cds.MS.gene065996.t1;Parent=MS.gene065996.t1

Gene Sequence

>MS.gene065996

ATGCAGATACCAAACACTTTCACAACAATCTCTCAACGCCCATTTCTCACTCATATCCCTACTTCACTTGGAGGCACTTTCCACCGTTTCAAACCTTTTTCTCCAACCAAACACTTCCCTATTCATTTCCACCCCCTTAAAGCAGCTACAACTACCCACCACGAACCTGTTGTTGTTGTTGTTGACAATGAACCGCGATTCGTTGATATTGGTTATGTATCCGGTGTTCACGGTTTTCAAGGCGATGTTCGTGTTAAGCCTAACACTGATTTTCCTGAACTCAGATTTTCCACGCCTGGGAGAAGATGGTTGAAGCAGATGGTTATGGGTGGAGAAAGCGTTCAGGAAATTGAGCTTGAAGAAGGTAGGGAACACTCTGGACAAAATTGTTGGATACTCAAATTCACAGGAATTGATTCTGCGGAGGAGGTAATTAATAATCATTTTCAAGAGGAATACACTCGTGGATATTAGGCATTGTTTGGATTAATTAACCACTTGCTTGTAATATAGTCAAATTGTTTTCATAAGCTAACCTGTACTGCTTATGAAAGCAAGTTGAAAAATACCTTATGGATGGTCATGTCATAAGTTGTTTTCGTGAACTCTCTAAACCAGTCTAACAGGTGATATACCTGTAGATAAACTCAAAGTAGTCAATACAAACTGGGACTTAATCTTTGTGAAACATGACAATTTCAACTAACAATAAAAGAAAAAACAAGTTTACTTAAAAAATGTGATTTAGTTTAAACTTTCGAGACTGTTTTGTTGATTTCTCATTAAAATTATAAGATTTTATTGTCATTTTTGTTCTAGCACAATGCCGTTTTCCGGGTTTGGTAATGCAAGCTTGTGACTTAAGTGGGCACGTTAAGGTGTTGGAAGGTCCTTTGACGTGTGCAATAAAAATATAGTATTGTAACTACTGTTTGATGGTTATATTTAATTGTTAAATAAAAAAGTACTACCACTGTGGAATCGAAAATGAAGCAACTTTTTTTTTTACCCTTTTTTGGTTTTCCCCATATTTTGTGAACCTGAAATCATAATGAATAGCTCCATACAGTACTAAATGTGTTAATTATTACTAGTCTGTCCGGCATACGTTAATTCGAGAAAGAGGGAGCATTTTTGTGAATTATCTTTGGTCCAATCATGTTTCAAAGACAGTTTGATGTTGTGATGCCAAACATAGATGTTACTTTTTGACAAAGTAATTGTCACACGATTTTGTTGTTCCTCAGTTGGGACTCAAGGAATCTAGCATTCATAGTTGCAAATGGAGAATTCAACTTTAGTTATTTTGCCATTGTCTGTTTGATCATATGATGTGCTTGTGCATCCTTTTGGCCTTGACTAATCAACACATCATGCAGGCTAAGATGCTTATTGGTGCTACCTTGCTTGTGACGGAAGAAGACAAGCCTGAACTCGAAGAGGGTGAATTTTACACACATGATCTCAATGGGATGCGAGTTTTTATGAAGGTTTGTGCTAATCATGAATCGTGTGTGTACATGCATGTGAAAAGACAAACTACTTTCTCTTCTCTTATTTGCCATTTTAACTTTTGTTCAAGCATCACCTTAAAATTAAACAAAATTAATTTTCTTTGCCTACTGTTTTTCTTTTATATTTTTGTGGTCTTTTATTAATTTGGTAATTCTCCCTGGTGAGCTATTGTAACAAAAAGGCCAATTGTTTGCCATGTTAATTTAGAGTCTCTCATGGAACATGACTAATCCTTTTTCTATGGAGCTCTTTGTAGATACATATCTGAATGCTAGCATTCATTTGTACCAATGATTCAGCATGCTAAATGTTAAGTGCTAATATTTGATAAAAACTAAAAGTGGCTATTATCAATAACCTTAATATTTGTTATTTTATATAAGTTTTTATTTTTCTACCTTGGTATTTTGTCACCTTCTTGTTAGTTTTAATCCTTAAAATGCAATATTTGAAGGTGTTGACCATACCTCTTATCAGGAAAATGGAAAACTTTTGGGAACAGTTATTAATGTTTTCAACAATGGAGCAAATGATCTACTTCAAATTTCACTTGATTCATCCTTTGATGTGCTTGATAAAAATGGCAAGCCAAAGCCAGAAGAAATAGAAGCATCTGGTCAGCTTGTTTTGGTACCTTTTGTTGAAGCAATTGTTCCAGATGTTGATATGAATAGAAGAGAAATGCATATTACTCCGCCCAAGGGACTTTTGGAGTTAAACTTACGATTTGATGATAGGTCCAAAAAAGAAAGACGCCAACTTGTGAGCCATATTCTCCCGATACTTTGTTACTATCAGAAATTTTCATTGTTAGTATGTTTGAAGTTTTATGCTTATTCCTGCTGATTCCATGTTTCCTTTATCTGTCTTAAACTTTTTAAGGCAAATTGAGAGTTGACCGGTGTTTTGTGATTGAGCATCTGTTTTAAAATATTTCTGTGTATGTTGCCTACTTCTCTTTTACAGTAAAACACCATGTACCCAAGAATCAACCCTAAAACTAAAACACAATTATCTAGCATTTAGTAATGGTTTCTATTACTTACTTTTTCTTCCGTTTACAAGGTAGTCACACTGACATACTTGCTGCAATCCGAATGAAGTTTCATTTTCACTTGGCATTCTACCTGTGCTATCCATCCCAATTAGATTTCCATACTGTGGCATTATGCTAGTGCCATTCATCCCAATATCTTCACCTGTATCATTTGTATTCTAAATTTCCTTTCATGAATTGATTCTCCTGTTGTGATATCTATGTTTGACTGGGTGTTTTCCACCATGTACAATTGATTCAAATTATGAATAATTACTTTTTGATGATTTTCAGGAATGGAAAGAAAGGAAAAAGTTCCAAAAGCGTCTCATAGCAGCAAAAAAGAAACTCTGTGAAATGGATCAACAACATGTCTTTCATGGATTTCAATGCGGAGAGAAAGAACAATGGAGCTTGCTTAGCGATCAGATTGTTGGTGTAAACTCCAGATTACTTCAGGATGCCTTACAAAGTCTTGAACAACCAGCCAACAGGCAAGTTAATGTACCAATCCAAAGTTTATTTTTTCCACTAAGCAGGCTTGGGAACATGAATTAAACCAATGTTGTTGTGCTCTATACAAAACAAAATTTTCAGTAAAGCCATTTAATTTTAGACTCTTTCTATTGGTTTCACTTACAGTCTTTGTAGGTCTTCCTTATATACTTCTTATTATTGAGTTATCCTACATTTAATCAACTCTTTCTAACCGGAGGTTCTATTAGTCTTTTCCTCACATGTCCAAACCATCTCAGGCACAATTCTACAGACTTCTCCCCATTAGAGGCCCCATATGCAAATAAAAAAAACTCCCCAATAGAGGCCCCCCATATGCAAACCAAAAAAAAACAGAGATATTATTATTGTAGTCCATAAATAACCTGTTACCATTTTGTACATTTTTATTCTATTTGTATTGAAAGGTTGTTGAAATACTAGGCTTAGGACAAAGGTATTCATCTCTGCCGATACGAAATGATAGGTCATGCTAACTTATTTTAACTTAAAGTATTCACTTTGTTTCCTTGCTAAATTTCACCTTTTCATCATTATTTTCTTGGCTTTTGTGTCACTATTACAAAAGGAAAAATTTCTTTCGAATTGGTGTGAATTTTTATTTGTGTTTTAACTTCTTTAAATCAGATGGAATGCAGCTGAGTTGGTCAGTGCCATGGAAGAAAAGCGTATACGTACTGTACAAATATCTGAAAAGTCTCTCCTAACTGGAAGTAAAACCAAGTTGGTTAGGAATATCATCAATATGAAAGAGAAGGGAGTTGAGCTAATTTCTAATGGCAAAATGGCTATTGTCTTGCTATTGAAAGAAAAAGAGAATGAAGGATGCATTTATGATCCTGAAGTTGTTGAAAATGAAGCAACTGAAACTTCAACACTACGCATGCTTCAAAACTTACTCTCTGATCATGAAAAGTTTGTAAAGGTTGTTTAATTGTGATTTTTTGTGTGTTTTTGGTACACATCTTTCGCATGAAACTTCTTTGCTGCAAAAATTTACTTGTTTCTTTAGATAGATGTTGTATTATAAATTAATTTTAACTAAACAATAATCTGTTAAAAAAATATTCAAAGAGATCGTCAAAAACAACCATCTTAATGTTCTGTTCTTCTTGTTCATCTCATTTCCACTATTTTAAAGGAGGATGTCCTATCTTCTATCTTTTGATTCTTCCTTTTCTACTTGGATGATGTTTGTTTTAATTCATACTAGGTGAAATAAGATGATATAAGTTAAGCTGATCTGTGATGTTTATCTGGCTAAGTGTCTTTTGGGAGTGACTAGACTACAAGGTACACTAAAAAGCTTATGATCATCTAATGAATTTCCATTTTTACAGGTTAACGATCGTGTATCTGTTCCTTTAATTTTGGTTTCCTCGGCCCAACAAATCCAGTCTTTAAGAAATCTCTTTACAAGGAACAATCACTTCGCGTTCGACTCTGAAAAGGTTCACATAATTTCAAGCCCCTTTCCTTTTGCATTTTGAATTATCTTGGTTAGATATGTATTAAAATTTGTTAGTGGCACATATCTCTTGCTGTGTCCAAAATTACATATTCTTAAAGTTCAAAGATTTTGGTTAAAAGGAAAAAATCATAAACTTGAGTTTCCAAATTACCCTTAATCTTGAGTTTCCAAACTACCCTTAATCTTGAGTTTCTACTTTACCTTGTTAAAAAAATGTGTCGTCTGTCAGTGTTGGAATATGAGTATTAGACCTAACCATATAACCATGGTGGTTTTTAGTCTGAAGAATTGTAAGGGATGGAATATTGTTTCCTCATTTCTCAGAAATTGAAAATTTCAGCTTTTCTGTAACTTTTAACTACTCCCTCCATCCCTATATATAAGCACTCATTTGACTAAAAATTTGTCCCTAAATATAAACCCATTTTCAAATTACTAGATGCATTTATTATTTTTTTTCCCTAAACATACCCCTAACTAATACTACTACCTTGTCTTGAAATATGAAAAGTCAAATTTAATACACATACAAACAAAGGACAATTTGGTAATGTTAACACACAAAATAGACACATTAATTGCACTAACAACTTTTCTTAAAAAATGTGGAAAAGGCAAAGAGAGCTTATATAGAGGGACGGAGGGAGTAGTATGCTATTTTCCTTTGAAGATGATAAACTGTAAACAATACATGTCACGTGAGGCATGTGAAGTGGTGCTCCATCTGTAGACATTAACCGCAAATCTGTACATAAACAATTTTTTTCAATTTAAAATGGAATGTGTCAAGTTCTTATCTTGCTTATTAGCTTCTTGCTTTTAATCCTCTTGCAGGTATGGTTTTTGGAAGAAGAGAAGCTTCCAGTTGTCAGCAGTTCACTAGAAGGACAAAACAAATACAAGATTTTAATGAAGTCGCCTTGGGAAATACTCCAATCTCCTGTTGGATCAGGAGGATTTATTAGCTTGTTTTCAAAACATGGCATTACAGATAATCTGATTAACATGGGTGTTGAGTACCTTGAGGTAAGATTATCTTTTGCTATACATTGAGATTGATGCTGATTTTATATTTATTCGTCAAGTTTCAATACACAACTATAACCAAAGCAATGGAGACATCCTTTAATTTTTTAGTTGCTAATGGTCGAGTCATTGTTGAAGTCTATTTGGCTTCATGTCTATAGCCAAATAGCTGAATGATGGACTCTGTTTTTTCCTTTGCCCAAGTTCCGATTGAATTGTTGCTTTTGGTGTAGTGTGTTTTATGTCAATTTATTTTATGTAGGTTTTTTCACGCGCACAAATTTTTTTCAGGACCCTTCATTTTATTAATAATAATATAAGTAATATACATGAAGGTAATACTTGTGGACACAACATGATTGCCTCTTATATACATTATGTAAGTCAGCCTATGAGAGCTAAAGCAAGTTTCACTGCCAGATATATAAACACGCTTCTTTTGAATATTTCAAAAGTAGGAAAATTTGAGGCTCAAGAGATTCCATCATTGTTTGCATGTTAAGTTGTAGACGTAGTTGCTAATCTGAAATACTGTGTTAAGTAAGATACTGAATTAAACTCAAACATTTTACCATTATATTCTGGAATTTCCGTGATTCAAAAGTTGGCATATTCGTTCTCCTCTGGATTTGCACATGGATCTTTTCTTTTCAATAAAAAACTACTAATTGCATTTCTGTGATATATTGGTATGTACTGCACCTGATTCATTTGTGTTGTGCATTCTTCCAGTTATGTTGTCCATGTGAAAGAAGTGTTGGTGGAAATTCACTACTTGTTGGGTTGGTTGATTCACGGGAAGCCAAAATTGGGATACAGATTACATCTACAATAGCTGATCCAGATGAAAATTTGGACATGATATTGTCGATGGAATTTGTAAAGAAGCTAACGAAGCAGAGCTACAAACTTCGATTTGATGCAACCGCCAAGACAAATTCCTTTATTGAGAGTGTTGATAAAGACTGGGTTACCGTTACCTCGTCCACCCCAAACTCATACGAGCTATCTTGTAGTGTATATAGTTCCTTAAATGCATGTCCGTTGGATAAGGTTTGTATAGTAGAGGTTAGAGAATAA

Protein sequence

>MS.gene065996.t1

MQIPNTFTTISQRPFLTHIPTSLGGTFHRFKPFSPTKHFPIHFHPLKAATTTHHEPVVVVVDNEPRFVDIGYVSGVHGFQGDVRVKPNTDFPELRFSTPGRRWLKQMVMGGESVQEIELEEGREHSGQNCWILKFTGIDSAEEAKMLIGATLLVTEEDKPELEEGEFYTHDLNGMRVFMKENGKLLGTVINVFNNGANDLLQISLDSSFDVLDKNGKPKPEEIEASGQLVLVPFVEAIVPDVDMNRREMHITPPKGLLELNLRFDDRSKKERRQLEWKERKKFQKRLIAAKKKLCEMDQQHVFHGFQCGEKEQWSLLSDQIVGVNSRLLQDALQSLEQPANRQLVSAMEEKRIRTVQISEKSLLTGSKTKLVRNIINMKEKGVELISNGKMAIVLLLKEKENEGCIYDPEVVENEATETSTLRMLQNLLSDHEKFVKVNDRVSVPLILVSSAQQIQSLRNLFTRNNHFAFDSEKVWFLEEEKLPVVSSSLEGQNKYKILMKSPWEILQSPVGSGGFISLFSKHGITDNLINMGVEYLELCCPCERSVGGNSLLVGLVDSREAKIGIQITSTIADPDENLDMILSMEFVKKLTKQSYKLRFDATAKTNSFIESVDKDWVTVTSSTPNSYELSCSVYSSLNACPLDKVCIVEVRE