AlfalfaGEDB | MS.gene68198

M. sativa cultivar XinJiangDaYe / MS.gene68198

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68198.t1	XP_003603971.2	98.3	116	2	0	1	116	1	116	2.20E-48	201.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68198.t1	Q9LZP8	49.0	100	51	0	13	112	8	107	1.5e-16	87.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68198.t1	G7J773	98.3	116	2	0	1	116	1	116	1.6e-48	201.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene68198.t1	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene68198	0.840124	1.05E-57	-1.69E-46
MS.gene04918	MS.gene68198	0.852164	5.52E-61	-1.69E-46
MS.gene04919	MS.gene68198	0.816004	6.91E-52	-1.69E-46
MS.gene04920	MS.gene68198	0.844752	6.22E-59	-1.69E-46
MS.gene049254	MS.gene68198	0.870747	1.15E-66	-1.69E-46
MS.gene049283	MS.gene68198	0.89224	1.91E-74	-1.69E-46
MS.gene049343	MS.gene68198	0.818396	2.00E-52	-1.69E-46
MS.gene049350	MS.gene68198	0.815028	1.14E-51	-1.69E-46
MS.gene049368	MS.gene68198	0.828125	1.07E-54	-1.69E-46
MS.gene049499	MS.gene68198	0.879621	1.07E-69	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68198.t1	MTR_3g117120	98.276	116	2	0	1	116	1	116	3.76e-77	224
MS.gene68198.t1	MTR_4g070860	77.586	116	26	0	1	116	1	116	6.52e-51	158
MS.gene68198.t1	MTR_1g022495	65.217	115	40	0	1	115	1	115	2.88e-47	149
MS.gene68198.t1	MTR_8g086020	57.851	121	46	2	1	116	1	121	7.09e-40	130
MS.gene68198.t1	MTR_3g112220	63.291	79	29	0	27	105	1	79	4.97e-30	103
MS.gene68198.t1	MTR_1g087040	44.545	110	58	1	1	110	1	107	3.20e-25	93.2
MS.gene68198.t1	MTR_6g016375	54.795	73	33	0	26	98	86	158	2.79e-18	76.6
MS.gene68198.t1	MTR_8g015250	50.685	73	36	0	26	98	70	142	2.01e-17	73.9
MS.gene68198.t1	MTR_7g029400	44.444	99	51	2	1	98	57	152	2.31e-17	73.9
MS.gene68198.t1	MTR_7g017880	51.250	80	39	0	19	98	76	155	2.98e-17	73.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68198.t1	AT1G75390	60.000	115	42	2	2	112	9	123	3.23e-40	132
MS.gene68198.t1	AT4G34590	69.318	88	27	0	26	113	23	110	2.34e-38	126
MS.gene68198.t1	AT2G18160	58.242	91	38	0	22	112	23	113	2.45e-34	117
MS.gene68198.t1	AT1G75390	60.825	97	34	2	2	94	9	105	4.20e-33	112
MS.gene68198.t1	AT3G62420	49.000	100	51	0	13	112	8	107	2.30e-26	95.9
MS.gene68198.t1	AT2G04038	48.837	86	41	1	16	98	57	142	2.63e-18	75.9
MS.gene68198.t1	AT5G15830	47.674	86	43	1	9	94	55	138	2.72e-17	73.6
MS.gene68198.t1	AT1G13600	45.882	85	44	1	16	98	70	154	1.22e-16	72.0
MS.gene68198.t1	AT3G30530	52.055	73	35	0	26	98	77	149	1.61e-16	71.2
MS.gene68198.t1	AT5G38800	47.500	80	42	0	19	98	61	140	2.23e-15	68.2

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Find 0 sgRNAs with CRISPR-Local

Find 12 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	AATGAGGAAACAAAAACACT+TGG	-	57668:158569-158588	MS.gene68198:CDS	30.0%
	TGTTCAACACTTCCAAATTC+AGG	-	57668:158462-158481	MS.gene68198:CDS	35.0%
	GGAAGATTTGATGCTTCTGA+TGG	-	57668:158491-158510	MS.gene68198:CDS	40.0%
	TCTTCAAGTGGAACATCTTC+AGG	-	57668:158438-158457	MS.gene68198:CDS	40.0%
	TCTTCCTCTGAACCTGAATT+TGG	+	57668:158477-158496	None:intergenic	40.0%
	CAGCAAGAAGATCTCGAATG+AGG	-	57668:158553-158572	MS.gene68198:CDS	45.0%
	CCTCACAACTCAACGATTCT+TGG	-	57668:158656-158675	MS.gene68198:CDS	45.0%
	CTGTTCAGGTGAGTCAACTA+AGG	-	57668:158601-158620	MS.gene68198:CDS	45.0%
!	ACTTCCAAATTCAGGTTCAG+AGG	-	57668:158470-158489	MS.gene68198:CDS	40.0%
!	CCAAGAATCGTTGAGTTGTG+AGG	+	57668:158659-158678	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
57668	gene	158432	158780	158432	ID=MS.gene68198
57668	mRNA	158432	158780	158432	ID=MS.gene68198.t1;Parent=MS.gene68198
57668	exon	158432	158780	158432	ID=MS.gene68198.t1.exon1;Parent=MS.gene68198.t1
57668	CDS	158432	158780	158432	ID=cds.MS.gene68198.t1;Parent=MS.gene68198.t1

Gene Sequence	>MS.gene68198 ATGGCTTCTTCAAGTGGAACATCTTCAGGCTGTTCAACACTTCCAAATTCAGGTTCAGAGGAAGATTTGATGCTTCTGATGGATCAAAGAAAAAGAAAGAGAATGATATCAAACCGCGAATCAGCAAGAAGATCTCGAATGAGGAAACAAAAACACTTGGATGATCTTGCTGTTCAGGTGAGTCAACTAAGGAATGAGAATCAACAGATTCTAACTTCAGTGAACCTCACAACTCAACGATTCTTGGCTGTTGAATCTGAAAACTCTGTGCTTAGAGCTCAACTGAATGAACTCAACAGCAGATTTGAGTCTTTGAATGAGATCATCAACTTCATGAATGTTGCAAATG
Protein sequence	>MS.gene68198.t1 MASSSGTSSGCSTLPNSGSEEDLMLLMDQRKRKRMISNRESARRSRMRKQKHLDDLAVQVSQLRNENQQILTSVNLTTQRFLAVESENSVLRAQLNELNSRFESLNEIINFMNVAN