AlfalfaGEDB | MS.gene68198

M. sativa cultivar XinJiangDaYe / MS.gene68198

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68198.t1	XP_003603971.2	98.3	116	2	0	1	116	1	116	2.20E-48	201.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68198.t1	Q9LZP8	49.0	100	51	0	13	112	8	107	1.5e-16	87.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68198.t1	G7J773	98.3	116	2	0	1	116	1	116	1.6e-48	201.4

TFs/TRs:

Gene ID	Type	Classification
MS.gene68198.t1	TF	bZIP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene68198	0.840124	1.05E-57	-1.69E-46
MS.gene04918	MS.gene68198	0.852164	5.52E-61	-1.69E-46
MS.gene04919	MS.gene68198	0.816004	6.91E-52	-1.69E-46
MS.gene04920	MS.gene68198	0.844752	6.22E-59	-1.69E-46
MS.gene049254	MS.gene68198	0.870747	1.15E-66	-1.69E-46
MS.gene049283	MS.gene68198	0.89224	1.91E-74	-1.69E-46
MS.gene049343	MS.gene68198	0.818396	2.00E-52	-1.69E-46
MS.gene049350	MS.gene68198	0.815028	1.14E-51	-1.69E-46
MS.gene049368	MS.gene68198	0.828125	1.07E-54	-1.69E-46
MS.gene049499	MS.gene68198	0.879621	1.07E-69	-1.69E-46
MS.gene049711	MS.gene68198	0.835647	1.49E-56	-1.69E-46
MS.gene049824	MS.gene68198	0.82323	1.55E-53	-1.69E-46
MS.gene049825	MS.gene68198	0.825463	4.63E-54	-1.69E-46
MS.gene049873	MS.gene68198	0.817864	2.64E-52	-1.69E-46
MS.gene049983	MS.gene68198	0.850442	1.69E-60	-1.69E-46
MS.gene050026	MS.gene68198	0.809889	1.51E-50	-1.69E-46
MS.gene050559	MS.gene68198	0.862095	6.46E-64	-1.69E-46
MS.gene050561	MS.gene68198	0.854422	1.24E-61	-1.69E-46
MS.gene050562	MS.gene68198	0.859073	5.32E-63	-1.69E-46
MS.gene050828	MS.gene68198	0.805998	1.02E-49	-1.69E-46
MS.gene050945	MS.gene68198	0.833925	4.03E-56	-1.69E-46
MS.gene051019	MS.gene68198	0.813321	2.72E-51	-1.69E-46
MS.gene051234	MS.gene68198	0.80335	3.63E-49	-1.69E-46
MS.gene051279	MS.gene68198	0.841134	5.71E-58	-1.69E-46
MS.gene051332	MS.gene68198	0.836253	1.04E-56	-1.69E-46
MS.gene051363	MS.gene68198	0.82959	4.73E-55	-1.69E-46
MS.gene051365	MS.gene68198	0.809896	1.51E-50	-1.69E-46
MS.gene051574	MS.gene68198	0.805721	1.16E-49	-1.69E-46
MS.gene051597	MS.gene68198	0.824464	7.96E-54	-1.69E-46
MS.gene051637	MS.gene68198	0.811425	7.05E-51	-1.69E-46
MS.gene051676	MS.gene68198	0.803078	4.14E-49	-1.69E-46
MS.gene051699	MS.gene68198	0.847584	1.05E-59	-1.69E-46
MS.gene051700	MS.gene68198	0.818607	1.80E-52	-1.69E-46
MS.gene051744	MS.gene68198	0.832589	8.67E-56	-1.69E-46
MS.gene051832	MS.gene68198	0.808866	2.51E-50	-1.69E-46
MS.gene05188	MS.gene68198	0.827572	1.45E-54	-1.69E-46
MS.gene051975	MS.gene68198	0.840094	1.07E-57	-1.69E-46
MS.gene052016	MS.gene68198	0.809083	2.25E-50	-1.69E-46
MS.gene052037	MS.gene68198	0.809799	1.58E-50	-1.69E-46
MS.gene052072	MS.gene68198	0.808726	2.69E-50	-1.69E-46
MS.gene052108	MS.gene68198	0.815318	9.83E-52	-1.69E-46
MS.gene052118	MS.gene68198	0.826715	2.33E-54	-1.69E-46
MS.gene052463	MS.gene68198	0.834685	2.60E-56	-1.69E-46
MS.gene052518	MS.gene68198	0.814381	1.59E-51	-1.69E-46
MS.gene052519	MS.gene68198	0.836079	1.15E-56	-1.69E-46
MS.gene052533	MS.gene68198	0.847224	1.32E-59	-1.69E-46
MS.gene052534	MS.gene68198	0.84174	3.96E-58	-1.69E-46
MS.gene052582	MS.gene68198	0.834416	3.04E-56	-1.69E-46
MS.gene052584	MS.gene68198	0.846385	2.25E-59	-1.69E-46
MS.gene052685	MS.gene68198	0.833427	5.37E-56	-1.69E-46
MS.gene052717	MS.gene68198	0.842134	3.11E-58	-1.69E-46
MS.gene052773	MS.gene68198	0.800429	1.45E-48	-1.69E-46
MS.gene052793	MS.gene68198	0.815232	1.03E-51	-1.69E-46
MS.gene052954	MS.gene68198	0.817686	2.90E-52	-1.69E-46
MS.gene053079	MS.gene68198	0.813796	2.13E-51	-1.69E-46
MS.gene05308	MS.gene68198	0.83132	1.78E-55	-1.69E-46
MS.gene053122	MS.gene68198	0.83508	2.07E-56	-1.69E-46
MS.gene053195	MS.gene68198	0.802339	5.88E-49	-1.69E-46
MS.gene053226	MS.gene68198	0.876642	1.19E-68	-1.69E-46
MS.gene053272	MS.gene68198	-0.81793	2.55E-52	-1.69E-46
MS.gene053298	MS.gene68198	0.820498	6.65E-53	-1.69E-46
MS.gene053321	MS.gene68198	0.807399	5.15E-50	-1.69E-46
MS.gene053541	MS.gene68198	0.80001	1.76E-48	-1.69E-46
MS.gene053542	MS.gene68198	0.811296	7.52E-51	-1.69E-46
MS.gene05364	MS.gene68198	0.828583	8.29E-55	-1.69E-46
MS.gene05365	MS.gene68198	0.819128	1.37E-52	-1.69E-46
MS.gene053931	MS.gene68198	0.833422	5.38E-56	-1.69E-46
MS.gene053963	MS.gene68198	0.85228	5.12E-61	-1.69E-46
MS.gene053995	MS.gene68198	0.804116	2.52E-49	-1.69E-46
MS.gene054142	MS.gene68198	0.847106	1.43E-59	-1.69E-46
MS.gene054178	MS.gene68198	0.813827	2.10E-51	-1.69E-46
MS.gene054222	MS.gene68198	0.836877	7.23E-57	-1.69E-46
MS.gene054328	MS.gene68198	0.837556	4.85E-57	-1.69E-46
MS.gene054479	MS.gene68198	0.826468	2.67E-54	-1.69E-46
MS.gene054489	MS.gene68198	0.83134	1.76E-55	-1.69E-46
MS.gene054576	MS.gene68198	0.817917	2.57E-52	-1.69E-46
MS.gene05458	MS.gene68198	0.845163	4.82E-59	-1.69E-46
MS.gene054651	MS.gene68198	0.859621	3.64E-63	-1.69E-46
MS.gene054775	MS.gene68198	0.808364	3.21E-50	-1.69E-46
MS.gene054892	MS.gene68198	0.818452	1.95E-52	-1.69E-46
MS.gene054893	MS.gene68198	0.818567	1.83E-52	-1.69E-46
MS.gene054957	MS.gene68198	0.869461	3.04E-66	-1.69E-46
MS.gene054991	MS.gene68198	0.804422	2.18E-49	-1.69E-46
MS.gene05517	MS.gene68198	0.811173	7.99E-51	-1.69E-46
MS.gene055229	MS.gene68198	0.811813	5.80E-51	-1.69E-46
MS.gene05539	MS.gene68198	0.830208	3.34E-55	-1.69E-46
MS.gene055513	MS.gene68198	0.838457	2.84E-57	-1.69E-46
MS.gene055586	MS.gene68198	0.816885	4.39E-52	-1.69E-46
MS.gene055589	MS.gene68198	0.826835	2.18E-54	-1.69E-46
MS.gene055694	MS.gene68198	0.816588	5.12E-52	-1.69E-46
MS.gene055724	MS.gene68198	0.800752	1.24E-48	-1.69E-46
MS.gene055778	MS.gene68198	0.801745	7.79E-49	-1.69E-46
MS.gene055801	MS.gene68198	0.82128	4.39E-53	-1.69E-46
MS.gene055841	MS.gene68198	0.814865	1.24E-51	-1.69E-46
MS.gene056045	MS.gene68198	0.817618	3.00E-52	-1.69E-46
MS.gene056050	MS.gene68198	0.845789	3.26E-59	-1.69E-46
MS.gene056091	MS.gene68198	0.800388	1.48E-48	-1.69E-46
MS.gene056174	MS.gene68198	0.815976	7.01E-52	-1.69E-46
MS.gene056215	MS.gene68198	0.814683	1.36E-51	-1.69E-46
MS.gene05624	MS.gene68198	0.817203	3.72E-52	-1.69E-46
MS.gene056308	MS.gene68198	0.809046	2.30E-50	-1.69E-46
MS.gene056363	MS.gene68198	0.80856	2.92E-50	-1.69E-46
MS.gene056403	MS.gene68198	0.818903	1.54E-52	-1.69E-46
MS.gene056595	MS.gene68198	0.82382	1.13E-53	-1.69E-46
MS.gene05659	MS.gene68198	0.805303	1.42E-49	-1.69E-46
MS.gene056605	MS.gene68198	0.810039	1.41E-50	-1.69E-46
MS.gene056677	MS.gene68198	0.802495	5.46E-49	-1.69E-46
MS.gene056699	MS.gene68198	0.831104	2.02E-55	-1.69E-46
MS.gene056776	MS.gene68198	0.837198	5.99E-57	-1.69E-46
MS.gene05686	MS.gene68198	0.880463	5.38E-70	-1.69E-46
MS.gene05689	MS.gene68198	0.851841	6.82E-61	-1.69E-46
MS.gene05690	MS.gene68198	0.833511	5.11E-56	-1.69E-46
MS.gene056973	MS.gene68198	0.817332	3.48E-52	-1.69E-46
MS.gene056986	MS.gene68198	0.839464	1.56E-57	-1.69E-46
MS.gene057034	MS.gene68198	0.817503	3.19E-52	-1.69E-46
MS.gene057102	MS.gene68198	0.887958	9.03E-73	-1.69E-46
MS.gene057155	MS.gene68198	0.81813	2.30E-52	-1.69E-46
MS.gene057208	MS.gene68198	0.880911	3.72E-70	-1.69E-46
MS.gene057611	MS.gene68198	0.804891	1.74E-49	-1.69E-46
MS.gene05781	MS.gene68198	0.800664	1.30E-48	-1.69E-46
MS.gene057893	MS.gene68198	-0.821098	4.84E-53	-1.69E-46
MS.gene058008	MS.gene68198	0.840108	1.06E-57	-1.69E-46
MS.gene058009	MS.gene68198	0.831689	1.45E-55	-1.69E-46
MS.gene058037	MS.gene68198	0.826211	3.07E-54	-1.69E-46
MS.gene058159	MS.gene68198	0.860313	2.25E-63	-1.69E-46
MS.gene058279	MS.gene68198	0.842645	2.28E-58	-1.69E-46
MS.gene058592	MS.gene68198	0.804708	1.90E-49	-1.69E-46
MS.gene058625	MS.gene68198	0.815574	8.62E-52	-1.69E-46
MS.gene058781	MS.gene68198	0.881502	2.28E-70	-1.69E-46
MS.gene058783	MS.gene68198	0.859477	4.03E-63	-1.69E-46
MS.gene058979	MS.gene68198	0.832534	8.95E-56	-1.69E-46
MS.gene05897	MS.gene68198	0.806689	7.28E-50	-1.69E-46
MS.gene059146	MS.gene68198	0.828392	9.22E-55	-1.69E-46
MS.gene059272	MS.gene68198	0.80686	6.70E-50	-1.69E-46
MS.gene05952	MS.gene68198	0.869596	2.75E-66	-1.69E-46
MS.gene05954	MS.gene68198	0.806471	8.09E-50	-1.69E-46
MS.gene059621	MS.gene68198	0.800523	1.38E-48	-1.69E-46
MS.gene059625	MS.gene68198	0.851919	6.48E-61	-1.69E-46
MS.gene059686	MS.gene68198	0.801826	7.50E-49	-1.69E-46
MS.gene059842	MS.gene68198	0.810666	1.03E-50	-1.69E-46
MS.gene05985	MS.gene68198	-0.887989	8.79E-73	-1.69E-46
MS.gene059901	MS.gene68198	-0.849688	2.75E-60	-1.69E-46
MS.gene059935	MS.gene68198	0.879856	8.86E-70	-1.69E-46
MS.gene059965	MS.gene68198	0.805606	1.23E-49	-1.69E-46
MS.gene060012	MS.gene68198	0.816879	4.40E-52	-1.69E-46
MS.gene060244	MS.gene68198	0.815628	8.38E-52	-1.69E-46
MS.gene060258	MS.gene68198	0.803118	4.06E-49	-1.69E-46
MS.gene060338	MS.gene68198	0.829689	4.47E-55	-1.69E-46
MS.gene060365	MS.gene68198	0.868683	5.44E-66	-1.69E-46
MS.gene060429	MS.gene68198	0.816612	5.06E-52	-1.69E-46
MS.gene060435	MS.gene68198	0.828838	7.20E-55	-1.69E-46
MS.gene060512	MS.gene68198	0.820793	5.68E-53	-1.69E-46
MS.gene060521	MS.gene68198	0.813373	2.65E-51	-1.69E-46
MS.gene060522	MS.gene68198	0.818455	1.94E-52	-1.69E-46
MS.gene060525	MS.gene68198	0.815622	8.41E-52	-1.69E-46
MS.gene060527	MS.gene68198	0.826467	2.67E-54	-1.69E-46
MS.gene060716	MS.gene68198	0.821361	4.21E-53	-1.69E-46
MS.gene060763	MS.gene68198	0.826906	2.10E-54	-1.69E-46
MS.gene060777	MS.gene68198	0.829346	5.42E-55	-1.69E-46
MS.gene060906	MS.gene68198	0.821022	5.04E-53	-1.69E-46
MS.gene060933	MS.gene68198	0.861058	1.34E-63	-1.69E-46
MS.gene060935	MS.gene68198	0.88777	1.07E-72	-1.69E-46
MS.gene060937	MS.gene68198	0.896365	3.96E-76	-1.69E-46
MS.gene061100	MS.gene68198	0.856734	2.63E-62	-1.69E-46
MS.gene061160	MS.gene68198	0.859911	2.98E-63	-1.69E-46
MS.gene061188	MS.gene68198	0.857308	1.78E-62	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68198.t1	MTR_3g117120	98.276	116	2	0	1	116	1	116	3.76e-77	224
MS.gene68198.t1	MTR_4g070860	77.586	116	26	0	1	116	1	116	6.52e-51	158
MS.gene68198.t1	MTR_1g022495	65.217	115	40	0	1	115	1	115	2.88e-47	149
MS.gene68198.t1	MTR_8g086020	57.851	121	46	2	1	116	1	121	7.09e-40	130
MS.gene68198.t1	MTR_3g112220	63.291	79	29	0	27	105	1	79	4.97e-30	103
MS.gene68198.t1	MTR_1g087040	44.545	110	58	1	1	110	1	107	3.20e-25	93.2
MS.gene68198.t1	MTR_6g016375	54.795	73	33	0	26	98	86	158	2.79e-18	76.6
MS.gene68198.t1	MTR_8g015250	50.685	73	36	0	26	98	70	142	2.01e-17	73.9
MS.gene68198.t1	MTR_7g029400	44.444	99	51	2	1	98	57	152	2.31e-17	73.9
MS.gene68198.t1	MTR_7g017880	51.250	80	39	0	19	98	76	155	2.98e-17	73.6
MS.gene68198.t1	MTR_4g097440	39.091	110	60	1	7	109	45	154	4.37e-16	70.1
MS.gene68198.t1	MTR_5g015090	40.000	110	57	2	7	111	37	142	4.95e-14	64.7
MS.gene68198.t1	MTR_7g109510	53.012	83	39	0	27	109	19	101	1.51e-12	60.1
MS.gene68198.t1	MTR_3g109310	34.259	108	67	1	6	109	98	205	2.47e-12	62.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68198.t1	AT1G75390	60.000	115	42	2	2	112	9	123	3.23e-40	132
MS.gene68198.t1	AT4G34590	69.318	88	27	0	26	113	23	110	2.34e-38	126
MS.gene68198.t1	AT2G18160	58.242	91	38	0	22	112	23	113	2.45e-34	117
MS.gene68198.t1	AT1G75390	60.825	97	34	2	2	94	9	105	4.20e-33	112
MS.gene68198.t1	AT3G62420	49.000	100	51	0	13	112	8	107	2.30e-26	95.9
MS.gene68198.t1	AT2G04038	48.837	86	41	1	16	98	57	142	2.63e-18	75.9
MS.gene68198.t1	AT5G15830	47.674	86	43	1	9	94	55	138	2.72e-17	73.6
MS.gene68198.t1	AT1G13600	45.882	85	44	1	16	98	70	154	1.22e-16	72.0
MS.gene68198.t1	AT3G30530	52.055	73	35	0	26	98	77	149	1.61e-16	71.2
MS.gene68198.t1	AT5G38800	47.500	80	42	0	19	98	61	140	2.23e-15	68.2
MS.gene68198.t1	AT4G37730	45.000	80	37	1	26	98	193	272	4.65e-12	61.2
MS.gene68198.t1	AT5G49450	41.860	86	44	2	27	109	13	95	2.12e-11	57.4
MS.gene68198.t1	AT3G49760	55.814	43	19	0	28	70	70	112	2.56e-11	57.4
MS.gene68198.t1	AT2G22850	37.079	89	56	0	23	111	122	210	3.87e-11	58.2
MS.gene68198.t1	AT2G22850	37.079	89	56	0	23	111	122	210	3.87e-11	58.2
MS.gene68198.t1	AT1G68880	38.554	83	51	0	12	94	29	111	4.16e-11	56.6

Find 0 sgRNAs with CRISPR-Local

Find 12 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	AATGAGGAAACAAAAACACT+TGG	-	57668:158569-158588	MS.gene68198:CDS	30.0%
	TGTTCAACACTTCCAAATTC+AGG	-	57668:158462-158481	MS.gene68198:CDS	35.0%
	GGAAGATTTGATGCTTCTGA+TGG	-	57668:158491-158510	MS.gene68198:CDS	40.0%
	TCTTCAAGTGGAACATCTTC+AGG	-	57668:158438-158457	MS.gene68198:CDS	40.0%
	TCTTCCTCTGAACCTGAATT+TGG	+	57668:158477-158496	None:intergenic	40.0%
!	ACTTCCAAATTCAGGTTCAG+AGG	-	57668:158470-158489	MS.gene68198:CDS	40.0%
	CAGCAAGAAGATCTCGAATG+AGG	-	57668:158553-158572	MS.gene68198:CDS	45.0%
	CCTCACAACTCAACGATTCT+TGG	-	57668:158656-158675	MS.gene68198:CDS	45.0%
	CTGTTCAGGTGAGTCAACTA+AGG	-	57668:158601-158620	MS.gene68198:CDS	45.0%
!	CCAAGAATCGTTGAGTTGTG+AGG	+	57668:158659-158678	None:intergenic	45.0%
!!	CTTGGATGATCTTGCTGTTC+AGG	-	57668:158587-158606	MS.gene68198:CDS	45.0%
!!	GAGATCTTCTTGCTGATTCG+CGG	+	57668:158548-158567	None:intergenic	45.0%

Chromosome	Type	Strat	End	Strand	Name
57668	gene	158432	158780	158432	ID=MS.gene68198
57668	mRNA	158432	158780	158432	ID=MS.gene68198.t1;Parent=MS.gene68198
57668	exon	158432	158780	158432	ID=MS.gene68198.t1.exon1;Parent=MS.gene68198.t1
57668	CDS	158432	158780	158432	ID=cds.MS.gene68198.t1;Parent=MS.gene68198.t1

Gene Sequence	>MS.gene68198 ATGGCTTCTTCAAGTGGAACATCTTCAGGCTGTTCAACACTTCCAAATTCAGGTTCAGAGGAAGATTTGATGCTTCTGATGGATCAAAGAAAAAGAAAGAGAATGATATCAAACCGCGAATCAGCAAGAAGATCTCGAATGAGGAAACAAAAACACTTGGATGATCTTGCTGTTCAGGTGAGTCAACTAAGGAATGAGAATCAACAGATTCTAACTTCAGTGAACCTCACAACTCAACGATTCTTGGCTGTTGAATCTGAAAACTCTGTGCTTAGAGCTCAACTGAATGAACTCAACAGCAGATTTGAGTCTTTGAATGAGATCATCAACTTCATGAATGTTGCAAATG
Protein sequence	>MS.gene68198.t1 MASSSGTSSGCSTLPNSGSEEDLMLLMDQRKRKRMISNRESARRSRMRKQKHLDDLAVQVSQLRNENQQILTSVNLTTQRFLAVESENSVLRAQLNELNSRFESLNEIINFMNVAN