Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21334.t1 | AFK39974.1 | 91.1 | 459 | 39 | 1 | 1 | 457 | 1 | 459 | 7.10E-183 | 650.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21334.t1 | A2BIJ3 | 26.4 | 220 | 135 | 6 | 38 | 235 | 8 | 222 | 6.6e-12 | 73.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21334.t1 | I3SI82 | 91.1 | 459 | 39 | 1 | 1 | 457 | 1 | 459 | 5.1e-183 | 650.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene21334 | 0.821976 | 3.03E-53 | -1.69E-46 |
| MS.gene049711 | MS.gene21334 | 0.810094 | 1.37E-50 | -1.69E-46 |
| MS.gene049977 | MS.gene21334 | 0.802948 | 4.40E-49 | -1.69E-46 |
| MS.gene050026 | MS.gene21334 | 0.818824 | 1.60E-52 | -1.69E-46 |
| MS.gene050273 | MS.gene21334 | 0.809381 | 1.95E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene21334 | 0.81549 | 9.00E-52 | -1.69E-46 |
| MS.gene050561 | MS.gene21334 | 0.816449 | 5.50E-52 | -1.69E-46 |
| MS.gene050562 | MS.gene21334 | 0.815775 | 7.78E-52 | -1.69E-46 |
| MS.gene051198 | MS.gene21334 | 0.80972 | 1.65E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene21334 | 0.830085 | 3.58E-55 | -1.69E-46 |
| MS.gene051332 | MS.gene21334 | 0.806164 | 9.40E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene21334 | 0.800973 | 1.12E-48 | -1.69E-46 |
| MS.gene052239 | MS.gene21334 | -0.833439 | 5.33E-56 | -1.69E-46 |
| MS.gene052447 | MS.gene21334 | 0.804699 | 1.91E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene21334 | 0.827256 | 1.73E-54 | -1.69E-46 |
| MS.gene052584 | MS.gene21334 | 0.833501 | 5.14E-56 | -1.69E-46 |
| MS.gene052586 | MS.gene21334 | 0.809723 | 1.64E-50 | -1.69E-46 |
| MS.gene05308 | MS.gene21334 | 0.806427 | 8.27E-50 | -1.69E-46 |
| MS.gene053154 | MS.gene21334 | 0.82558 | 4.34E-54 | -1.69E-46 |
| MS.gene053226 | MS.gene21334 | 0.803376 | 3.59E-49 | -1.69E-46 |
| MS.gene053272 | MS.gene21334 | -0.807359 | 5.25E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene21334 | 0.807233 | 5.59E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene21334 | 0.814065 | 1.86E-51 | -1.69E-46 |
| MS.gene054991 | MS.gene21334 | 0.804236 | 2.38E-49 | -1.69E-46 |
| MS.gene055228 | MS.gene21334 | 0.804856 | 1.77E-49 | -1.69E-46 |
| MS.gene056050 | MS.gene21334 | 0.807264 | 5.50E-50 | -1.69E-46 |
| MS.gene056272 | MS.gene21334 | 0.801325 | 9.50E-49 | -1.69E-46 |
| MS.gene057314 | MS.gene21334 | 0.834657 | 2.64E-56 | -1.69E-46 |
| MS.gene058625 | MS.gene21334 | 0.805093 | 1.58E-49 | -1.69E-46 |
| MS.gene059621 | MS.gene21334 | 0.802262 | 6.10E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene21334 | 0.839606 | 1.43E-57 | -1.69E-46 |
| MS.gene060134 | MS.gene21334 | 0.806905 | 6.55E-50 | -1.69E-46 |
| MS.gene060521 | MS.gene21334 | 0.815835 | 7.54E-52 | -1.69E-46 |
| MS.gene060634 | MS.gene21334 | -0.829599 | 4.70E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21334.t1 | MTR_1g089850 | 94.553 | 459 | 23 | 1 | 1 | 457 | 1 | 459 | 0.0 | 792 |
| MS.gene21334.t1 | MTR_7g094240 | 47.854 | 466 | 169 | 14 | 1 | 457 | 1 | 401 | 1.19e-89 | 278 |
| MS.gene21334.t1 | MTR_2g021070 | 40.319 | 501 | 200 | 15 | 1 | 451 | 1 | 452 | 1.35e-82 | 262 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21334.t1 | AT1G03350 | 43.975 | 473 | 219 | 12 | 1 | 445 | 1 | 455 | 1.97e-102 | 314 |
| MS.gene21334.t1 | AT4G13110 | 39.852 | 271 | 118 | 9 | 40 | 279 | 25 | 281 | 1.88e-46 | 163 |
Find 130 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAATTGGTGGTGAAAATT+TGG | 0.105584 | 1.4:+71182579 | MS.gene21334:CDS |
| GAATTTGATGAGTGGAAATT+AGG | 0.182897 | 1.4:+71182259 | MS.gene21334:CDS |
| TGCTCAGGTTCGTGCAATTC+AGG | 0.219397 | 1.4:+71182195 | MS.gene21334:CDS |
| AGCGTCGCCGTCGCCGGAAT+TGG | 0.228839 | 1.4:-71181882 | None:intergenic |
| GGTATTATTATAAGGTTTAT+AGG | 0.230852 | 1.4:+71182401 | MS.gene21334:CDS |
| TTGGGTTTGGGTTCGGATTC+GGG | 0.235445 | 1.4:-71181842 | None:intergenic |
| GATTCGGGTTGAGGTGGATC+TGG | 0.256193 | 1.4:-71181827 | None:intergenic |
| GCGACGGTAAGTTTCGATTA+TGG | 0.256322 | 1.4:-71181951 | None:intergenic |
| GTTGGGTTTGGGTTCGGATT+CGG | 0.256474 | 1.4:-71181843 | None:intergenic |
| CTGGTCTGCATTGTTGGGTT+TGG | 0.259654 | 1.4:-71181855 | None:intergenic |
| GAAATTGGTGGTGAAAATTT+GGG | 0.265691 | 1.4:+71182580 | MS.gene21334:CDS |
| TTCGATTATGGATTCGGATT+TGG | 0.290867 | 1.4:-71181939 | None:intergenic |
| TTGGGTTCGGATTCGGGTTG+AGG | 0.296541 | 1.4:-71181836 | None:intergenic |
| TGAAGAAAGCTGAAGATGTT+AGG | 0.325019 | 1.4:+71182425 | MS.gene21334:CDS |
| TGGTCTGCATTGTTGGGTTT+GGG | 0.333433 | 1.4:-71181854 | None:intergenic |
| CTTCAGCAAATCAACTTTGC+TGG | 0.335975 | 1.4:-71183067 | None:intergenic |
| TTGGTTCAGGTATTATTATA+AGG | 0.344791 | 1.4:+71182393 | MS.gene21334:CDS |
| TGCATTGTTGGGTTTGGGTT+CGG | 0.346197 | 1.4:-71181849 | None:intergenic |
| AAAACTGGTGCTTCTGGCTC+TGG | 0.351031 | 1.4:+71182625 | MS.gene21334:CDS |
| GATTTGAAAACTGGTGCTTC+TGG | 0.359098 | 1.4:+71182619 | MS.gene21334:CDS |
| GATGACTCATTCTTACTAGA+AGG | 0.362595 | 1.4:-71182922 | None:intergenic |
| AATTTGATGAGTGGAAATTA+GGG | 0.367833 | 1.4:+71182260 | MS.gene21334:CDS |
| AATGAGGAGGAAGAGGATCT+TGG | 0.374345 | 1.4:+71182970 | MS.gene21334:CDS |
| GCAGACCAGGATCCCAATTC+CGG | 0.378484 | 1.4:+71181869 | MS.gene21334:CDS |
| CAAGATTCCGTCGGTGAGAT+TGG | 0.378504 | 1.4:+71182022 | MS.gene21334:CDS |
| GGGATCCTGGTCTGCATTGT+TGG | 0.379815 | 1.4:-71181861 | None:intergenic |
| TGGATTCGAAGCGGTATAGT+AGG | 0.388900 | 1.4:+71182167 | MS.gene21334:CDS |
| GTTGATACTGATTTGAAAAC+TGG | 0.389096 | 1.4:+71182610 | MS.gene21334:CDS |
| GTAAGTTTCGATTATGGATT+CGG | 0.390284 | 1.4:-71181945 | None:intergenic |
| TCCTTGTTGATCACAATCTC+TGG | 0.391936 | 1.4:-71182559 | None:intergenic |
| GCGTCGCCGTCGCCGGAATT+GGG | 0.394731 | 1.4:-71181881 | None:intergenic |
| CGCAGTGGCAGTGCTATTAT+CGG | 0.395180 | 1.4:-71182125 | None:intergenic |
| ATCTGGGTCGTCGGAGAAAA+CGG | 0.413965 | 1.4:-71181810 | None:intergenic |
| GTATAGTAGGTTTGATGCTC+AGG | 0.416255 | 1.4:+71182180 | MS.gene21334:CDS |
| GGATCCTGGTCTGCATTGTT+GGG | 0.419286 | 1.4:-71181860 | None:intergenic |
| ATTGTGATCAACAAGGAAAT+TGG | 0.419598 | 1.4:+71182565 | MS.gene21334:CDS |
| GGCTTGTTAGAAGAATTTCC+AGG | 0.422643 | 1.4:+71182452 | MS.gene21334:CDS |
| CAATGGAGAGTGTTTATAAG+AGG | 0.424882 | 1.4:+71182338 | MS.gene21334:CDS |
| ATGAGGAGGAAGAGGATCTT+GGG | 0.436535 | 1.4:+71182971 | MS.gene21334:CDS |
| CGTCGCCGGAATTGGGATCC+TGG | 0.443524 | 1.4:-71181874 | None:intergenic |
| CTGATGAGAAAGTGATAGAA+AGG | 0.448652 | 1.4:+71182881 | MS.gene21334:CDS |
| GACGGCGACGCTTGGAACTT+CGG | 0.450481 | 1.4:+71181893 | MS.gene21334:CDS |
| ATTCCGGCGACGGCGACGCT+TGG | 0.452269 | 1.4:+71181885 | MS.gene21334:CDS |
| GGCAGTGCTATTATCGGAAT+CGG | 0.457066 | 1.4:-71182119 | None:intergenic |
| GGGGCAGCATTCGAGGGTGG+AGG | 0.464859 | 1.4:+71182681 | MS.gene21334:CDS |
| CGTGCAATTCAGGGTGATGT+TGG | 0.465749 | 1.4:+71182205 | MS.gene21334:CDS |
| GGAAGAAGAGGATTTGAGTT+GGG | 0.472961 | 1.4:+71182474 | MS.gene21334:CDS |
| GTGCAATTCAGGGTGATGTT+GGG | 0.475509 | 1.4:+71182206 | MS.gene21334:CDS |
| GGAAGATGAAGACTTGAGTT+GGG | 0.479085 | 1.4:+71183107 | MS.gene21334:CDS |
| CAAATATATCAAGCCTTAGC+AGG | 0.479573 | 1.4:-71183153 | None:intergenic |
| TGGAAGAGGGGCAGCATTCG+AGG | 0.479807 | 1.4:+71182674 | MS.gene21334:CDS |
| AAGAATTTCCAGGGAAGAAG+AGG | 0.480736 | 1.4:+71182462 | MS.gene21334:CDS |
| ACTCAAATCCTCTTCTTCCC+TGG | 0.481399 | 1.4:-71182470 | None:intergenic |
| AGGAAGATGAAGACTTGAGT+TGG | 0.483278 | 1.4:+71183106 | MS.gene21334:CDS |
| ATTCGGGTTGAGGTGGATCT+GGG | 0.491019 | 1.4:-71181826 | None:intergenic |
| GGATGAGAAAAGTGATGAAA+TGG | 0.492754 | 1.4:+71182291 | MS.gene21334:CDS |
| ATCGAGATTAACGGCGAGGA+TGG | 0.499318 | 1.4:-71182095 | None:intergenic |
| GCGACGCTTGGAACTTCGGC+GGG | 0.500516 | 1.4:+71181897 | MS.gene21334:CDS |
| GAAGAAAGCTGAAGATGTTA+GGG | 0.501420 | 1.4:+71182426 | MS.gene21334:CDS |
| CATGGAAAATGAGGAGGAAG+AGG | 0.503340 | 1.4:+71182963 | MS.gene21334:CDS |
| GATGATATTGAGGATCTTAG+TGG | 0.507365 | 1.4:+71182997 | MS.gene21334:CDS |
| GTTCCAAGCGTCGCCGTCGC+CGG | 0.511161 | 1.4:-71181888 | None:intergenic |
| GGTTCGGATTCGGGTTGAGG+TGG | 0.511687 | 1.4:-71181833 | None:intergenic |
| GAAGAATTCAAGTGTGGAAG+AGG | 0.512506 | 1.4:+71182660 | MS.gene21334:CDS |
| TCAAATTCACTCAAATCCTC+AGG | 0.513224 | 1.4:-71182244 | None:intergenic |
| TAGTGGTATTGATGAAAAGA+AGG | 0.517712 | 1.4:+71183014 | MS.gene21334:CDS |
| TGAGAAAGTGATAGAAAGGA+AGG | 0.517849 | 1.4:+71182885 | MS.gene21334:CDS |
| CATCTTCCTCTGCAGTACTA+AGG | 0.523871 | 1.4:-71183092 | None:intergenic |
| TAAAGCATCGAAGTCGGTAG+TGG | 0.528589 | 1.4:+71182822 | MS.gene21334:CDS |
| GCTCAGGTTCGTGCAATTCA+GGG | 0.532993 | 1.4:+71182196 | MS.gene21334:CDS |
| GGAATCGGAATCGAGATTAA+CGG | 0.533636 | 1.4:-71182104 | None:intergenic |
| GTGGAAATTAGGGTTTGTGT+TGG | 0.536121 | 1.4:+71182270 | MS.gene21334:CDS |
| CAGGATCCCAATTCCGGCGA+CGG | 0.537455 | 1.4:+71181875 | MS.gene21334:CDS |
| AATAGCACTGCCACTGCGAA+TGG | 0.538260 | 1.4:+71182130 | MS.gene21334:CDS |
| CAAACCCAACAATGCAGACC+AGG | 0.538648 | 1.4:+71181856 | MS.gene21334:CDS |
| GGGAAGAAGAGGATTTGAGT+TGG | 0.541417 | 1.4:+71182473 | MS.gene21334:CDS |
| GACTTATACTGAGGTGCCTG+AGG | 0.545312 | 1.4:+71182228 | MS.gene21334:CDS |
| TTGAGGTGGATCTGGGTCGT+CGG | 0.546664 | 1.4:-71181819 | None:intergenic |
| GAATGGCGATTCGAATCGAT+TGG | 0.546970 | 1.4:+71182147 | MS.gene21334:CDS |
| AATGGAGAGTGTTTATAAGA+GGG | 0.548312 | 1.4:+71182339 | MS.gene21334:CDS |
| AAAGTGATAGAAAGGAAGGA+TGG | 0.549445 | 1.4:+71182889 | MS.gene21334:CDS |
| GGCGACGCTTGGAACTTCGG+CGG | 0.549601 | 1.4:+71181896 | MS.gene21334:CDS |
| GGAAGAGGGGCAGCATTCGA+GGG | 0.555050 | 1.4:+71182675 | MS.gene21334:CDS |
| TCTTGGGTGGGATGATATTG+AGG | 0.555475 | 1.4:+71182987 | MS.gene21334:CDS |
| AAGCTGAAGATGTTAGGGCT+AGG | 0.556193 | 1.4:+71182431 | MS.gene21334:CDS |
| AAGTAAGCACATGGAAAATG+AGG | 0.558524 | 1.4:+71182954 | MS.gene21334:CDS |
| AAATTGGTGGTGAAAATTTG+GGG | 0.560857 | 1.4:+71182581 | MS.gene21334:CDS |
| TGATGACGATGAGCCTGCTA+AGG | 0.563128 | 1.4:+71183140 | MS.gene21334:CDS |
| ATTGGAACCACCGTCATCAA+AGG | 0.571640 | 1.4:+71182040 | MS.gene21334:CDS |
| AAGAATTCAAGTGTGGAAGA+GGG | 0.573736 | 1.4:+71182661 | MS.gene21334:CDS |
| CAATGAACTAGGTGATGTGA+AGG | 0.573866 | 1.4:+71182741 | MS.gene21334:CDS |
| AGAGGGGCAGCATTCGAGGG+TGG | 0.585305 | 1.4:+71182678 | MS.gene21334:CDS |
| AGAATTCAAGTGTGGAAGAG+GGG | 0.589969 | 1.4:+71182662 | MS.gene21334:CDS |
| CTGAGCCGTTCCTTTGATGA+CGG | 0.594327 | 1.4:-71182050 | None:intergenic |
| GGATTCGGATTTGGATGCGA+GGG | 0.596133 | 1.4:-71181930 | None:intergenic |
| AGGAGGAAGAGGATCTTGGG+TGG | 0.596785 | 1.4:+71182974 | MS.gene21334:CDS |
| ATCACGAGTTGTTGAGAACA+AGG | 0.597931 | 1.4:+71182780 | MS.gene21334:CDS |
| AGCCGTTCCTTTGATGACGG+TGG | 0.599684 | 1.4:-71182047 | None:intergenic |
| GTAATGCAAAGCAATGAACT+AGG | 0.604203 | 1.4:+71182730 | MS.gene21334:CDS |
| GGAGGAAGAGGATCTTGGGT+GGG | 0.605758 | 1.4:+71182975 | MS.gene21334:CDS |
| GCTTGTTAGAAGAATTTCCA+GGG | 0.609477 | 1.4:+71182453 | MS.gene21334:CDS |
| ATTTGAGTGAATTTGATGAG+TGG | 0.617215 | 1.4:+71182251 | MS.gene21334:CDS |
| GTGATCAACAAGGAAATTGG+TGG | 0.628466 | 1.4:+71182568 | MS.gene21334:CDS |
| AGTGGTTGAAAGTAAGCACA+TGG | 0.631264 | 1.4:+71182945 | MS.gene21334:CDS |
| AACCACCGTCATCAAAGGAA+CGG | 0.634037 | 1.4:+71182045 | MS.gene21334:CDS |
| GTGAACAAGGAAGTTTCTGC+GGG | 0.635287 | 1.4:+71182853 | MS.gene21334:CDS |
| GTTGAGAACAAGGATGATGA+TGG | 0.637710 | 1.4:+71182790 | MS.gene21334:CDS |
| AGTGGATGATGCTGTGAACA+AGG | 0.649337 | 1.4:+71182840 | MS.gene21334:CDS |
| ACGGCTCAGATCATATCTCA+AGG | 0.650094 | 1.4:+71182064 | MS.gene21334:CDS |
| GAAGCGCCTTAGTACTGCAG+AGG | 0.650693 | 1.4:+71183086 | MS.gene21334:CDS |
| GATCTACAAGAATTCAGCAC+CGG | 0.654688 | 1.4:+71181974 | MS.gene21334:CDS |
| TAAGCACATGGAAAATGAGG+AGG | 0.656390 | 1.4:+71182957 | MS.gene21334:CDS |
| TGATGAGAAGAATTCAAGTG+TGG | 0.664883 | 1.4:+71182654 | MS.gene21334:CDS |
| CGGAATCGAGATTAACGGCG+AGG | 0.668033 | 1.4:-71182099 | None:intergenic |
| TGTTGATAAAGCATCGAAGT+CGG | 0.669368 | 1.4:+71182816 | MS.gene21334:CDS |
| TAGTAAGAATGAGTCATCAG+TGG | 0.670980 | 1.4:+71182927 | MS.gene21334:CDS |
| TGGATTCGGATTTGGATGCG+AGG | 0.673737 | 1.4:-71181931 | None:intergenic |
| GGTGGTTCCAATCTCACCGA+CGG | 0.676084 | 1.4:-71182029 | None:intergenic |
| TGATGATGATGACGATGACG+TGG | 0.679696 | 1.4:+71182507 | MS.gene21334:CDS |
| TGAATTCTTGTAGATCGCGA+CGG | 0.681017 | 1.4:-71181967 | None:intergenic |
| ATTCGAATCGCCATTCGCAG+TGG | 0.681136 | 1.4:-71182140 | None:intergenic |
| GAAGTTGCTCAAGATTCCGT+CGG | 0.682572 | 1.4:+71182013 | MS.gene21334:CDS |
| ACCAGAGATTGTGATCAACA+AGG | 0.692058 | 1.4:+71182558 | MS.gene21334:CDS |
| GAGAACAAGGATGATGATGG+TGG | 0.698581 | 1.4:+71182793 | MS.gene21334:CDS |
| AATTGGTGGTGAAAATTTGG+GGG | 0.700591 | 1.4:+71182582 | MS.gene21334:CDS |
| TGTGAACAAGGAAGTTTCTG+CGG | 0.704468 | 1.4:+71182852 | MS.gene21334:CDS |
| GATGACGTGGAGGAGAACGA+AGG | 0.707209 | 1.4:+71182520 | MS.gene21334:CDS |
| CGAATCGATTGGATTCGAAG+CGG | 0.712226 | 1.4:+71182158 | MS.gene21334:CDS |
| TGATGATGACGATGACGTGG+AGG | 0.730704 | 1.4:+71182510 | MS.gene21334:CDS |
| TGATGTTGGGACTTATACTG+AGG | 0.744272 | 1.4:+71182219 | MS.gene21334:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GGTATTATTATAAGGTTTAT+AGG | + | chr1.4:71182401-71182420 | MS.gene21334:CDS | 20.0% |
| !!! | TTGTTGATCATGAAAATTTT+TGG | + | chr1.4:71182374-71182393 | MS.gene21334:CDS | 20.0% |
| ! | AATTTGATGAGTGGAAATTA+GGG | + | chr1.4:71182260-71182279 | MS.gene21334:CDS | 25.0% |
| ! | TTGGTTCAGGTATTATTATA+AGG | + | chr1.4:71182393-71182412 | MS.gene21334:CDS | 25.0% |
| !! | TTTTCATGATCAACAACATT+CGG | - | chr1.4:71182370-71182389 | None:intergenic | 25.0% |
| !!! | ATCATGAAAATTTTTGGTTC+AGG | + | chr1.4:71182380-71182399 | MS.gene21334:CDS | 25.0% |
| ATTGTGATCAACAAGGAAAT+TGG | + | chr1.4:71182565-71182584 | MS.gene21334:CDS | 30.0% | |
| ATTTGAGTGAATTTGATGAG+TGG | + | chr1.4:71182251-71182270 | MS.gene21334:CDS | 30.0% | |
| GAATTTGATGAGTGGAAATT+AGG | + | chr1.4:71182259-71182278 | MS.gene21334:CDS | 30.0% | |
| GTAAGTTTCGATTATGGATT+CGG | - | chr1.4:71181948-71181967 | None:intergenic | 30.0% | |
| ! | ATGAAATGGAGAAGCTTTTT+AGG | + | chr1.4:71182305-71182324 | MS.gene21334:CDS | 30.0% |
| ! | TGAAATGGAGAAGCTTTTTA+GGG | + | chr1.4:71182306-71182325 | MS.gene21334:CDS | 30.0% |
| !! | AAATTGGTGGTGAAAATTTG+GGG | + | chr1.4:71182581-71182600 | MS.gene21334:CDS | 30.0% |
| !! | AATGGAGAGTGTTTATAAGA+GGG | + | chr1.4:71182339-71182358 | MS.gene21334:CDS | 30.0% |
| !! | GAAATTGGTGGTGAAAATTT+GGG | + | chr1.4:71182580-71182599 | MS.gene21334:CDS | 30.0% |
| !! | GTTGATACTGATTTGAAAAC+TGG | + | chr1.4:71182610-71182629 | MS.gene21334:CDS | 30.0% |
| !! | TAGTGGTATTGATGAAAAGA+AGG | + | chr1.4:71183014-71183033 | MS.gene21334:CDS | 30.0% |
| AAAGTGATAGAAAGGAAGGA+TGG | + | chr1.4:71182889-71182908 | MS.gene21334:CDS | 35.0% | |
| AAGAATTCAAGTGTGGAAGA+GGG | + | chr1.4:71182661-71182680 | MS.gene21334:CDS | 35.0% | |
| AAGTAAGCACATGGAAAATG+AGG | + | chr1.4:71182954-71182973 | MS.gene21334:CDS | 35.0% | |
| CTGATGAGAAAGTGATAGAA+AGG | + | chr1.4:71182881-71182900 | MS.gene21334:CDS | 35.0% | |
| GAAGAAAGCTGAAGATGTTA+GGG | + | chr1.4:71182426-71182445 | MS.gene21334:CDS | 35.0% | |
| GATGACTCATTCTTACTAGA+AGG | - | chr1.4:71182925-71182944 | None:intergenic | 35.0% | |
| GATGATATTGAGGATCTTAG+TGG | + | chr1.4:71182997-71183016 | MS.gene21334:CDS | 35.0% | |
| GGATGAGAAAAGTGATGAAA+TGG | + | chr1.4:71182291-71182310 | MS.gene21334:CDS | 35.0% | |
| GTAATGCAAAGCAATGAACT+AGG | + | chr1.4:71182730-71182749 | MS.gene21334:CDS | 35.0% | |
| TAGTAAGAATGAGTCATCAG+TGG | + | chr1.4:71182927-71182946 | MS.gene21334:CDS | 35.0% | |
| TCAAATTCACTCAAATCCTC+AGG | - | chr1.4:71182247-71182266 | None:intergenic | 35.0% | |
| TGAAGAAAGCTGAAGATGTT+AGG | + | chr1.4:71182425-71182444 | MS.gene21334:CDS | 35.0% | |
| TGAGAAAGTGATAGAAAGGA+AGG | + | chr1.4:71182885-71182904 | MS.gene21334:CDS | 35.0% | |
| TGATGAGAAGAATTCAAGTG+TGG | + | chr1.4:71182654-71182673 | MS.gene21334:CDS | 35.0% | |
| TTCGATTATGGATTCGGATT+TGG | - | chr1.4:71181942-71181961 | None:intergenic | 35.0% | |
| ! | GCTTGTTAGAAGAATTTCCA+GGG | + | chr1.4:71182453-71182472 | MS.gene21334:CDS | 35.0% |
| !! | AATTGGTGGTGAAAATTTGG+GGG | + | chr1.4:71182582-71182601 | MS.gene21334:CDS | 35.0% |
| !! | CAATGGAGAGTGTTTATAAG+AGG | + | chr1.4:71182338-71182357 | MS.gene21334:CDS | 35.0% |
| !! | GGAAATTGGTGGTGAAAATT+TGG | + | chr1.4:71182579-71182598 | MS.gene21334:CDS | 35.0% |
| !! | TGTTGATAAAGCATCGAAGT+CGG | + | chr1.4:71182816-71182835 | MS.gene21334:CDS | 35.0% |
| !! | TTTTAGGGAGAATGATGCAA+TGG | + | chr1.4:71182321-71182340 | MS.gene21334:CDS | 35.0% |
| !!! | TTCGATCTCGTTTTTTAAGC+CGG | - | chr1.4:71181996-71182015 | None:intergenic | 35.0% |
| AAGAATTTCCAGGGAAGAAG+AGG | + | chr1.4:71182462-71182481 | MS.gene21334:CDS | 40.0% | |
| ACCAGAGATTGTGATCAACA+AGG | + | chr1.4:71182558-71182577 | MS.gene21334:CDS | 40.0% | |
| AGAATTCAAGTGTGGAAGAG+GGG | + | chr1.4:71182662-71182681 | MS.gene21334:CDS | 40.0% | |
| AGGAAGATGAAGACTTGAGT+TGG | + | chr1.4:71183106-71183125 | MS.gene21334:CDS | 40.0% | |
| AGTGGTTGAAAGTAAGCACA+TGG | + | chr1.4:71182945-71182964 | MS.gene21334:CDS | 40.0% | |
| ATCACGAGTTGTTGAGAACA+AGG | + | chr1.4:71182780-71182799 | MS.gene21334:CDS | 40.0% | |
| CAATGAACTAGGTGATGTGA+AGG | + | chr1.4:71182741-71182760 | MS.gene21334:CDS | 40.0% | |
| CTTCAGCAAATCAACTTTGC+TGG | - | chr1.4:71183070-71183089 | None:intergenic | 40.0% | |
| GAAGAATTCAAGTGTGGAAG+AGG | + | chr1.4:71182660-71182679 | MS.gene21334:CDS | 40.0% | |
| GATCTACAAGAATTCAGCAC+CGG | + | chr1.4:71181974-71181993 | MS.gene21334:CDS | 40.0% | |
| GATTTGAAAACTGGTGCTTC+TGG | + | chr1.4:71182619-71182638 | MS.gene21334:CDS | 40.0% | |
| GGAAGATGAAGACTTGAGTT+GGG | + | chr1.4:71183107-71183126 | MS.gene21334:CDS | 40.0% | |
| GGAATCGGAATCGAGATTAA+CGG | - | chr1.4:71182107-71182126 | None:intergenic | 40.0% | |
| GTATAGTAGGTTTGATGCTC+AGG | + | chr1.4:71182180-71182199 | MS.gene21334:CDS | 40.0% | |
| GTGATCAACAAGGAAATTGG+TGG | + | chr1.4:71182568-71182587 | MS.gene21334:CDS | 40.0% | |
| GTGGAAATTAGGGTTTGTGT+TGG | + | chr1.4:71182270-71182289 | MS.gene21334:CDS | 40.0% | |
| GTTGAGAACAAGGATGATGA+TGG | + | chr1.4:71182790-71182809 | MS.gene21334:CDS | 40.0% | |
| TAAGCACATGGAAAATGAGG+AGG | + | chr1.4:71182957-71182976 | MS.gene21334:CDS | 40.0% | |
| TCCTTGTTGATCACAATCTC+TGG | - | chr1.4:71182562-71182581 | None:intergenic | 40.0% | |
| TGAATTCTTGTAGATCGCGA+CGG | - | chr1.4:71181970-71181989 | None:intergenic | 40.0% | |
| TGATGTTGGGACTTATACTG+AGG | + | chr1.4:71182219-71182238 | MS.gene21334:CDS | 40.0% | |
| TGGTGAAAATTTGGGGGAAA+AGG | + | chr1.4:71182588-71182607 | MS.gene21334:CDS | 40.0% | |
| TGTGAACAAGGAAGTTTCTG+CGG | + | chr1.4:71182852-71182871 | MS.gene21334:CDS | 40.0% | |
| ! | GGAAGAAGAGGATTTGAGTT+GGG | + | chr1.4:71182474-71182493 | MS.gene21334:CDS | 40.0% |
| !! | GGCTTGTTAGAAGAATTTCC+AGG | + | chr1.4:71182452-71182471 | MS.gene21334:CDS | 40.0% |
| AACCACCGTCATCAAAGGAA+CGG | + | chr1.4:71182045-71182064 | MS.gene21334:CDS | 45.0% | |
| AAGCTGAAGATGTTAGGGCT+AGG | + | chr1.4:71182431-71182450 | MS.gene21334:CDS | 45.0% | |
| AATGAGGAGGAAGAGGATCT+TGG | + | chr1.4:71182970-71182989 | MS.gene21334:CDS | 45.0% | |
| ACGGCTCAGATCATATCTCA+AGG | + | chr1.4:71182064-71182083 | MS.gene21334:CDS | 45.0% | |
| ACTCAAATCCTCTTCTTCCC+TGG | - | chr1.4:71182473-71182492 | None:intergenic | 45.0% | |
| AGTGGATGATGCTGTGAACA+AGG | + | chr1.4:71182840-71182859 | MS.gene21334:CDS | 45.0% | |
| ATGAGGAGGAAGAGGATCTT+GGG | + | chr1.4:71182971-71182990 | MS.gene21334:CDS | 45.0% | |
| ATTGGAACCACCGTCATCAA+AGG | + | chr1.4:71182040-71182059 | MS.gene21334:CDS | 45.0% | |
| CATCTTCCTCTGCAGTACTA+AGG | - | chr1.4:71183095-71183114 | None:intergenic | 45.0% | |
| CATGGAAAATGAGGAGGAAG+AGG | + | chr1.4:71182963-71182982 | MS.gene21334:CDS | 45.0% | |
| CGAATCGATTGGATTCGAAG+CGG | + | chr1.4:71182158-71182177 | MS.gene21334:CDS | 45.0% | |
| GAAGTTGCTCAAGATTCCGT+CGG | + | chr1.4:71182013-71182032 | MS.gene21334:CDS | 45.0% | |
| GAATGGCGATTCGAATCGAT+TGG | + | chr1.4:71182147-71182166 | MS.gene21334:CDS | 45.0% | |
| GCGACGGTAAGTTTCGATTA+TGG | - | chr1.4:71181954-71181973 | None:intergenic | 45.0% | |
| GGGAAGAAGAGGATTTGAGT+TGG | + | chr1.4:71182473-71182492 | MS.gene21334:CDS | 45.0% | |
| GTGAACAAGGAAGTTTCTGC+GGG | + | chr1.4:71182853-71182872 | MS.gene21334:CDS | 45.0% | |
| GTGCAATTCAGGGTGATGTT+GGG | + | chr1.4:71182206-71182225 | MS.gene21334:CDS | 45.0% | |
| TCTTGGGTGGGATGATATTG+AGG | + | chr1.4:71182987-71183006 | MS.gene21334:CDS | 45.0% | |
| TGGATTCGAAGCGGTATAGT+AGG | + | chr1.4:71182167-71182186 | MS.gene21334:CDS | 45.0% | |
| TGGTCTGCATTGTTGGGTTT+GGG | - | chr1.4:71181857-71181876 | None:intergenic | 45.0% | |
| ! | GGCAGTGCTATTATCGGAAT+CGG | - | chr1.4:71182122-71182141 | None:intergenic | 45.0% |
| ! | TGATGATGATGACGATGACG+TGG | + | chr1.4:71182507-71182526 | MS.gene21334:CDS | 45.0% |
| ! | TGCATTGTTGGGTTTGGGTT+CGG | - | chr1.4:71181852-71181871 | None:intergenic | 45.0% |
| !! | GAGAACAAGGATGATGATGG+TGG | + | chr1.4:71182793-71182812 | MS.gene21334:CDS | 45.0% |
| !! | TAAAGCATCGAAGTCGGTAG+TGG | + | chr1.4:71182822-71182841 | MS.gene21334:CDS | 45.0% |
| AATAGCACTGCCACTGCGAA+TGG | + | chr1.4:71182130-71182149 | MS.gene21334:CDS | 50.0% | |
| ATCGAGATTAACGGCGAGGA+TGG | - | chr1.4:71182098-71182117 | None:intergenic | 50.0% | |
| ATCTGGGTCGTCGGAGAAAA+CGG | - | chr1.4:71181813-71181832 | None:intergenic | 50.0% | |
| ATTCGAATCGCCATTCGCAG+TGG | - | chr1.4:71182143-71182162 | None:intergenic | 50.0% | |
| CAAACCCAACAATGCAGACC+AGG | + | chr1.4:71181856-71181875 | MS.gene21334:CDS | 50.0% | |
| CAAGATTCCGTCGGTGAGAT+TGG | + | chr1.4:71182022-71182041 | MS.gene21334:CDS | 50.0% | |
| CGTGCAATTCAGGGTGATGT+TGG | + | chr1.4:71182205-71182224 | MS.gene21334:CDS | 50.0% | |
| CTGAGCCGTTCCTTTGATGA+CGG | - | chr1.4:71182053-71182072 | None:intergenic | 50.0% | |
| CTGGTCTGCATTGTTGGGTT+TGG | - | chr1.4:71181858-71181877 | None:intergenic | 50.0% | |
| GCTCAGGTTCGTGCAATTCA+GGG | + | chr1.4:71182196-71182215 | MS.gene21334:CDS | 50.0% | |
| GGATCCTGGTCTGCATTGTT+GGG | - | chr1.4:71181863-71181882 | None:intergenic | 50.0% | |
| GGATTCGGATTTGGATGCGA+GGG | - | chr1.4:71181933-71181952 | None:intergenic | 50.0% | |
| TGCTCAGGTTCGTGCAATTC+AGG | + | chr1.4:71182195-71182214 | MS.gene21334:CDS | 50.0% | |
| TGGATTCGGATTTGGATGCG+AGG | - | chr1.4:71181934-71181953 | None:intergenic | 50.0% | |
| ! | CGCAGTGGCAGTGCTATTAT+CGG | - | chr1.4:71182128-71182147 | None:intergenic | 50.0% |
| ! | GACTTATACTGAGGTGCCTG+AGG | + | chr1.4:71182228-71182247 | MS.gene21334:CDS | 50.0% |
| ! | GTTGGGTTTGGGTTCGGATT+CGG | - | chr1.4:71181846-71181865 | None:intergenic | 50.0% |
| ! | TGATGACGATGAGCCTGCTA+AGG | + | chr1.4:71183140-71183159 | MS.gene21334:CDS | 50.0% |
| ! | TGATGATGACGATGACGTGG+AGG | + | chr1.4:71182510-71182529 | MS.gene21334:CDS | 50.0% |
| ! | TTGGGTTTGGGTTCGGATTC+GGG | - | chr1.4:71181845-71181864 | None:intergenic | 50.0% |
| !! | AAAACTGGTGCTTCTGGCTC+TGG | + | chr1.4:71182625-71182644 | MS.gene21334:CDS | 50.0% |
| !! | ATTCGGGTTGAGGTGGATCT+GGG | - | chr1.4:71181829-71181848 | None:intergenic | 50.0% |
| AGGAGGAAGAGGATCTTGGG+TGG | + | chr1.4:71182974-71182993 | MS.gene21334:CDS | 55.0% | |
| CGGAATCGAGATTAACGGCG+AGG | - | chr1.4:71182102-71182121 | None:intergenic | 55.0% | |
| GATGACGTGGAGGAGAACGA+AGG | + | chr1.4:71182520-71182539 | MS.gene21334:CDS | 55.0% | |
| GCAGACCAGGATCCCAATTC+CGG | + | chr1.4:71181869-71181888 | MS.gene21334:CDS | 55.0% | |
| GGAGGAAGAGGATCTTGGGT+GGG | + | chr1.4:71182975-71182994 | MS.gene21334:CDS | 55.0% | |
| GGGATCCTGGTCTGCATTGT+TGG | - | chr1.4:71181864-71181883 | None:intergenic | 55.0% | |
| GGTGGTTCCAATCTCACCGA+CGG | - | chr1.4:71182032-71182051 | None:intergenic | 55.0% | |
| TTGAGGTGGATCTGGGTCGT+CGG | - | chr1.4:71181822-71181841 | None:intergenic | 55.0% | |
| ! | GAAGCGCCTTAGTACTGCAG+AGG | + | chr1.4:71183086-71183105 | MS.gene21334:CDS | 55.0% |
| !! | AGCCGTTCCTTTGATGACGG+TGG | - | chr1.4:71182050-71182069 | None:intergenic | 55.0% |
| !! | GATTCGGGTTGAGGTGGATC+TGG | - | chr1.4:71181830-71181849 | None:intergenic | 55.0% |
| !! | TTGGGTTCGGATTCGGGTTG+AGG | - | chr1.4:71181839-71181858 | None:intergenic | 55.0% |
| CAGGATCCCAATTCCGGCGA+CGG | + | chr1.4:71181875-71181894 | MS.gene21334:CDS | 60.0% | |
| GACGGCGACGCTTGGAACTT+CGG | + | chr1.4:71181893-71181912 | MS.gene21334:CDS | 60.0% | |
| GGAAGAGGGGCAGCATTCGA+GGG | + | chr1.4:71182675-71182694 | MS.gene21334:CDS | 60.0% | |
| TGGAAGAGGGGCAGCATTCG+AGG | + | chr1.4:71182674-71182693 | MS.gene21334:CDS | 60.0% | |
| !! | GGTTCGGATTCGGGTTGAGG+TGG | - | chr1.4:71181836-71181855 | None:intergenic | 60.0% |
| AGAGGGGCAGCATTCGAGGG+TGG | + | chr1.4:71182678-71182697 | MS.gene21334:CDS | 65.0% | |
| CGTCGCCGGAATTGGGATCC+TGG | - | chr1.4:71181877-71181896 | None:intergenic | 65.0% | |
| GCGACGCTTGGAACTTCGGC+GGG | + | chr1.4:71181897-71181916 | MS.gene21334:CDS | 65.0% | |
| GGCGACGCTTGGAACTTCGG+CGG | + | chr1.4:71181896-71181915 | MS.gene21334:CDS | 65.0% | |
| AGCGTCGCCGTCGCCGGAAT+TGG | - | chr1.4:71181885-71181904 | None:intergenic | 70.0% | |
| ATTCCGGCGACGGCGACGCT+TGG | + | chr1.4:71181885-71181904 | MS.gene21334:CDS | 70.0% | |
| GCGTCGCCGTCGCCGGAATT+GGG | - | chr1.4:71181884-71181903 | None:intergenic | 70.0% | |
| GGGGCAGCATTCGAGGGTGG+AGG | + | chr1.4:71182681-71182700 | MS.gene21334:CDS | 70.0% | |
| ! | GTTCCAAGCGTCGCCGTCGC+CGG | - | chr1.4:71181891-71181910 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 71181794 | 71183167 | 71181794 | ID=MS.gene21334 |
| chr1.4 | mRNA | 71181794 | 71183167 | 71181794 | ID=MS.gene21334.t1;Parent=MS.gene21334 |
| chr1.4 | exon | 71181794 | 71183167 | 71181794 | ID=MS.gene21334.t1.exon1;Parent=MS.gene21334.t1 |
| chr1.4 | CDS | 71181794 | 71183167 | 71181794 | ID=cds.MS.gene21334.t1;Parent=MS.gene21334.t1 |
| Gene Sequence |
| Protein sequence |
