AlfalfaGEDB | MS.gene21334

M. sativa cultivar XinJiangDaYe / MS.gene21334

KEGG: -
GO: -
PFAM: PF03909.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21334.t1	AFK39974.1	91.1	459	39	1	1	457	1	459	7.10E-183	650.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21334.t1	A2BIJ3	26.4	220	135	6	38	235	8	222	6.6e-12	73.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21334.t1	I3SI82	91.1	459	39	1	1	457	1	459	5.1e-183	650.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene21334	0.821976	3.03E-53	-1.69E-46
MS.gene049711	MS.gene21334	0.810094	1.37E-50	-1.69E-46
MS.gene049977	MS.gene21334	0.802948	4.40E-49	-1.69E-46
MS.gene050026	MS.gene21334	0.818824	1.60E-52	-1.69E-46
MS.gene050273	MS.gene21334	0.809381	1.95E-50	-1.69E-46
MS.gene050559	MS.gene21334	0.81549	9.00E-52	-1.69E-46
MS.gene050561	MS.gene21334	0.816449	5.50E-52	-1.69E-46
MS.gene050562	MS.gene21334	0.815775	7.78E-52	-1.69E-46
MS.gene051198	MS.gene21334	0.80972	1.65E-50	-1.69E-46
MS.gene051279	MS.gene21334	0.830085	3.58E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21334.t1	MTR_1g089850	94.553	459	23	1	1	457	1	459	0.0	792
MS.gene21334.t1	MTR_7g094240	47.854	466	169	14	1	457	1	401	1.19e-89	278
MS.gene21334.t1	MTR_2g021070	40.319	501	200	15	1	451	1	452	1.35e-82	262

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21334.t1	AT1G03350	43.975	473	219	12	1	445	1	455	1.97e-102	314
MS.gene21334.t1	AT4G13110	39.852	271	118	9	40	279	25	281	1.88e-46	163

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Find 130 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGGTGCTTCTGGCTC+TGG	0.351031	1.4:+71182625	MS.gene21334:CDS
AAAGTGATAGAAAGGAAGGA+TGG	0.549445	1.4:+71182889	MS.gene21334:CDS
AAATTGGTGGTGAAAATTTG+GGG	0.560857	1.4:+71182581	MS.gene21334:CDS
AACCACCGTCATCAAAGGAA+CGG	0.634037	1.4:+71182045	MS.gene21334:CDS
AAGAATTCAAGTGTGGAAGA+GGG	0.573736	1.4:+71182661	MS.gene21334:CDS
AAGAATTTCCAGGGAAGAAG+AGG	0.480736	1.4:+71182462	MS.gene21334:CDS
AAGCTGAAGATGTTAGGGCT+AGG	0.556193	1.4:+71182431	MS.gene21334:CDS
AAGTAAGCACATGGAAAATG+AGG	0.558524	1.4:+71182954	MS.gene21334:CDS
AATAGCACTGCCACTGCGAA+TGG	0.538260	1.4:+71182130	MS.gene21334:CDS
AATGAGGAGGAAGAGGATCT+TGG	0.374345	1.4:+71182970	MS.gene21334:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGTGATCAACAAGGAAAT+TGG	+	chr1.4:71182565-71182584	MS.gene21334:CDS	30.0%
ATTTGAGTGAATTTGATGAG+TGG	+	chr1.4:71182251-71182270	MS.gene21334:CDS	30.0%
GAATTTGATGAGTGGAAATT+AGG	+	chr1.4:71182259-71182278	MS.gene21334:CDS	30.0%
GTAAGTTTCGATTATGGATT+CGG	-	chr1.4:71181948-71181967	None:intergenic	30.0%
AAAGTGATAGAAAGGAAGGA+TGG	+	chr1.4:71182889-71182908	MS.gene21334:CDS	35.0%
AAGAATTCAAGTGTGGAAGA+GGG	+	chr1.4:71182661-71182680	MS.gene21334:CDS	35.0%
AAGTAAGCACATGGAAAATG+AGG	+	chr1.4:71182954-71182973	MS.gene21334:CDS	35.0%
CTGATGAGAAAGTGATAGAA+AGG	+	chr1.4:71182881-71182900	MS.gene21334:CDS	35.0%
GAAGAAAGCTGAAGATGTTA+GGG	+	chr1.4:71182426-71182445	MS.gene21334:CDS	35.0%
GATGACTCATTCTTACTAGA+AGG	-	chr1.4:71182925-71182944	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	71181794	71183167	71181794	ID=MS.gene21334
chr1.4	mRNA	71181794	71183167	71181794	ID=MS.gene21334.t1;Parent=MS.gene21334
chr1.4	exon	71181794	71183167	71181794	ID=MS.gene21334.t1.exon1;Parent=MS.gene21334.t1
chr1.4	CDS	71181794	71183167	71181794	ID=cds.MS.gene21334.t1;Parent=MS.gene21334.t1

Gene Sequence

>MS.gene21334

ATGAATTTCTTCAAATCCGTTTTCTCCGACGACCCAGATCCACCTCAACCCGAATCCGAACCCAAACCCAACAATGCAGACCAGGATCCCAATTCCGGCGACGGCGACGCTTGGAACTTCGGCGGGCTCATTAAAACCCTCGCATCCAAATCCGAATCCATAATCGAAACTTACCGTCGCGATCTACAAGAATTCAGCACCGGCTTAAAAAACGAGATCGAAGTTGCTCAAGATTCCGTCGGTGAGATTGGAACCACCGTCATCAAAGGAACGGCTCAGATCATATCTCAAGGTAAAGAAGCCATCCTCGCCGTTAATCTCGATTCCGATTCCGATAATAGCACTGCCACTGCGAATGGCGATTCGAATCGATTGGATTCGAAGCGGTATAGTAGGTTTGATGCTCAGGTTCGTGCAATTCAGGGTGATGTTGGGACTTATACTGAGGTGCCTGAGGATTTGAGTGAATTTGATGAGTGGAAATTAGGGTTTGTGTTGGATGAGAAAAGTGATGAAATGGAGAAGCTTTTTAGGGAGAATGATGCAATGGAGAGTGTTTATAAGAGGGTTGTTCCGAATGTTGTTGATCATGAAAATTTTTGGTTCAGGTATTATTATAAGGTTTATAGGTTGAAGAAAGCTGAAGATGTTAGGGCTAGGCTTGTTAGAAGAATTTCCAGGGAAGAAGAGGATTTGAGTTGGGATGTTGAAGATGATGATGATGACGATGACGTGGAGGAGAACGAAGGTGAAGTTAAAGTTAAACCAGAGATTGTGATCAACAAGGAAATTGGTGGTGAAAATTTGGGGGAAAAGGTTGATACTGATTTGAAAACTGGTGCTTCTGGCTCTGGTGCTAGTGATGAGAAGAATTCAAGTGTGGAAGAGGGGCAGCATTCGAGGGTGGAGGAGTTGAAAGTAGAAAAGAAAGATAGTGTAATGCAAAGCAATGAACTAGGTGATGTGAAGGATAAGTCTGTTGAAGAATCACGAGTTGTTGAGAACAAGGATGATGATGGTGGTGTTGATAAAGCATCGAAGTCGGTAGTGGATGATGCTGTGAACAAGGAAGTTTCTGCGGGTGAGTCTGATGAGAAAGTGATAGAAAGGAAGGATGGTGATGAAAAACCTTCTAGTAAGAATGAGTCATCAGTGGTTGAAAGTAAGCACATGGAAAATGAGGAGGAAGAGGATCTTGGGTGGGATGATATTGAGGATCTTAGTGGTATTGATGAAAAGAAGGAAACTCAATCTCAGAGTCAGAGTGATAGTGCCAGCAAAGTTGATTTGCTGAAGCGCCTTAGTACTGCAGAGGAAGATGAAGACTTGAGTTGGGATATCGAAGATGATGACGATGAGCCTGCTAAGGCTTGA

Protein sequence

>MS.gene21334.t1

MNFFKSVFSDDPDPPQPESEPKPNNADQDPNSGDGDAWNFGGLIKTLASKSESIIETYRRDLQEFSTGLKNEIEVAQDSVGEIGTTVIKGTAQIISQGKEAILAVNLDSDSDNSTATANGDSNRLDSKRYSRFDAQVRAIQGDVGTYTEVPEDLSEFDEWKLGFVLDEKSDEMEKLFRENDAMESVYKRVVPNVVDHENFWFRYYYKVYRLKKAEDVRARLVRRISREEEDLSWDVEDDDDDDDVEENEGEVKVKPEIVINKEIGGENLGEKVDTDLKTGASGSGASDEKNSSVEEGQHSRVEELKVEKKDSVMQSNELGDVKDKSVEESRVVENKDDDGGVDKASKSVVDDAVNKEVSAGESDEKVIERKDGDEKPSSKNESSVVESKHMENEEEEDLGWDDIEDLSGIDEKKETQSQSQSDSASKVDLLKRLSTAEEDEDLSWDIEDDDDEPAKA