Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39406.t1 | XP_003608188.2 | 95.6 | 321 | 4 | 1 | 1 | 321 | 1 | 311 | 5.40E-153 | 550.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39406.t1 | A2YMP7 | 73.0 | 322 | 70 | 4 | 1 | 321 | 1 | 306 | 2.3e-112 | 406.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39406.t1 | G7JQS3 | 95.6 | 321 | 4 | 1 | 1 | 321 | 1 | 311 | 3.9e-153 | 550.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene39406 | 0.805905 | 1.07E-49 | -1.69E-46 |
| MS.gene049254 | MS.gene39406 | 0.804871 | 1.75E-49 | -1.69E-46 |
| MS.gene049283 | MS.gene39406 | 0.806867 | 6.68E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene39406 | 0.819286 | 1.26E-52 | -1.69E-46 |
| MS.gene049807 | MS.gene39406 | 0.805961 | 1.04E-49 | -1.69E-46 |
| MS.gene050945 | MS.gene39406 | 0.800376 | 1.48E-48 | -1.69E-46 |
| MS.gene051019 | MS.gene39406 | 0.83231 | 1.02E-55 | -1.69E-46 |
| MS.gene051201 | MS.gene39406 | 0.80134 | 9.43E-49 | -1.69E-46 |
| MS.gene051538 | MS.gene39406 | 0.800589 | 1.34E-48 | -1.69E-46 |
| MS.gene051699 | MS.gene39406 | 0.82351 | 1.33E-53 | -1.69E-46 |
| MS.gene05191 | MS.gene39406 | 0.824151 | 9.43E-54 | -1.69E-46 |
| MS.gene052016 | MS.gene39406 | 0.80071 | 1.27E-48 | -1.69E-46 |
| MS.gene052307 | MS.gene39406 | 0.806511 | 7.94E-50 | -1.69E-46 |
| MS.gene052463 | MS.gene39406 | 0.810766 | 9.79E-51 | -1.69E-46 |
| MS.gene052533 | MS.gene39406 | 0.826539 | 2.57E-54 | -1.69E-46 |
| MS.gene052570 | MS.gene39406 | 0.805384 | 1.37E-49 | -1.69E-46 |
| MS.gene052793 | MS.gene39406 | 0.813845 | 2.08E-51 | -1.69E-46 |
| MS.gene053272 | MS.gene39406 | -0.854275 | 1.37E-61 | -1.69E-46 |
| MS.gene054178 | MS.gene39406 | 0.808289 | 3.33E-50 | -1.69E-46 |
| MS.gene054222 | MS.gene39406 | 0.803319 | 3.69E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene39406 | 0.818497 | 1.90E-52 | -1.69E-46 |
| MS.gene054893 | MS.gene39406 | 0.825879 | 3.68E-54 | -1.69E-46 |
| MS.gene055150 | MS.gene39406 | 0.80422 | 2.40E-49 | -1.69E-46 |
| MS.gene055386 | MS.gene39406 | 0.828784 | 7.41E-55 | -1.69E-46 |
| MS.gene056082 | MS.gene39406 | 0.817213 | 3.71E-52 | -1.69E-46 |
| MS.gene05624 | MS.gene39406 | 0.805765 | 1.14E-49 | -1.69E-46 |
| MS.gene056677 | MS.gene39406 | 0.808207 | 3.47E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene39406 | 0.82898 | 6.65E-55 | -1.69E-46 |
| MS.gene057102 | MS.gene39406 | 0.848893 | 4.58E-60 | -1.69E-46 |
| MS.gene057174 | MS.gene39406 | 0.809889 | 1.51E-50 | -1.69E-46 |
| MS.gene058095 | MS.gene39406 | 0.835972 | 1.23E-56 | -1.69E-46 |
| MS.gene058159 | MS.gene39406 | 0.815521 | 8.86E-52 | -1.69E-46 |
| MS.gene058355 | MS.gene39406 | 0.819842 | 9.39E-53 | -1.69E-46 |
| MS.gene058974 | MS.gene39406 | 0.816971 | 4.20E-52 | -1.69E-46 |
| MS.gene059170 | MS.gene39406 | 0.810146 | 1.33E-50 | -1.69E-46 |
| MS.gene05952 | MS.gene39406 | 0.829485 | 5.01E-55 | -1.69E-46 |
| MS.gene059621 | MS.gene39406 | 0.809359 | 1.97E-50 | -1.69E-46 |
| MS.gene059634 | MS.gene39406 | 0.817146 | 3.84E-52 | -1.69E-46 |
| MS.gene05985 | MS.gene39406 | -0.853018 | 3.15E-61 | -1.69E-46 |
| MS.gene060512 | MS.gene39406 | 0.805831 | 1.10E-49 | -1.69E-46 |
| MS.gene060522 | MS.gene39406 | 0.820459 | 6.78E-53 | -1.69E-46 |
| MS.gene060777 | MS.gene39406 | 0.82188 | 3.19E-53 | -1.69E-46 |
| MS.gene060933 | MS.gene39406 | 0.803496 | 3.39E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene39406 | 0.812448 | 4.22E-51 | -1.69E-46 |
| MS.gene060937 | MS.gene39406 | 0.825784 | 3.88E-54 | -1.69E-46 |
| MS.gene061100 | MS.gene39406 | 0.853743 | 1.95E-61 | -1.69E-46 |
| MS.gene061160 | MS.gene39406 | 0.839847 | 1.24E-57 | -1.69E-46 |
| MS.gene061188 | MS.gene39406 | 0.825363 | 4.88E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39406.t1 | MTR_4g090510 | 95.950 | 321 | 3 | 1 | 1 | 321 | 1 | 311 | 0.0 | 628 |
| MS.gene39406.t1 | MTR_2g012560 | 74.920 | 311 | 45 | 3 | 1 | 311 | 1 | 278 | 3.54e-169 | 471 |
| MS.gene39406.t1 | MTR_2g012560 | 72.669 | 311 | 43 | 4 | 1 | 311 | 1 | 269 | 7.01e-160 | 447 |
| MS.gene39406.t1 | MTR_2g090115 | 65.723 | 318 | 94 | 2 | 4 | 321 | 5 | 307 | 1.83e-159 | 447 |
| MS.gene39406.t1 | MTR_4g046110 | 69.782 | 321 | 79 | 4 | 3 | 321 | 2 | 306 | 4.74e-149 | 421 |
| MS.gene39406.t1 | MTR_5g027790 | 55.556 | 306 | 90 | 6 | 1 | 301 | 1 | 265 | 1.98e-116 | 337 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39406.t1 | AT1G61250 | 66.873 | 323 | 69 | 6 | 1 | 320 | 1 | 288 | 5.20e-156 | 438 |
| MS.gene39406.t1 | AT1G11180 | 66.769 | 325 | 68 | 5 | 1 | 320 | 1 | 290 | 6.56e-155 | 435 |
| MS.gene39406.t1 | AT1G11180 | 64.923 | 325 | 67 | 5 | 1 | 320 | 1 | 283 | 1.25e-148 | 419 |
| MS.gene39406.t1 | AT1G11180 | 62.426 | 338 | 67 | 5 | 1 | 320 | 1 | 296 | 2.38e-146 | 414 |
| MS.gene39406.t1 | AT1G61250 | 67.698 | 291 | 66 | 5 | 1 | 288 | 1 | 266 | 2.84e-143 | 405 |
| MS.gene39406.t1 | AT2G20840 | 65.831 | 319 | 71 | 4 | 3 | 321 | 2 | 282 | 2.44e-141 | 400 |
| MS.gene39406.t1 | AT1G03550 | 59.875 | 319 | 91 | 3 | 3 | 321 | 2 | 283 | 1.78e-133 | 381 |
| MS.gene39406.t1 | AT2G20840 | 73.494 | 249 | 56 | 1 | 73 | 321 | 1 | 239 | 5.54e-128 | 365 |
| MS.gene39406.t1 | AT2G20840 | 73.494 | 249 | 56 | 1 | 73 | 321 | 1 | 239 | 5.54e-128 | 365 |
| MS.gene39406.t1 | AT1G03550 | 61.702 | 282 | 81 | 2 | 3 | 284 | 2 | 256 | 1.68e-122 | 352 |
| MS.gene39406.t1 | AT1G32050 | 54.934 | 304 | 94 | 6 | 1 | 302 | 1 | 263 | 2.91e-114 | 331 |
| MS.gene39406.t1 | AT1G03550 | 65.665 | 233 | 70 | 1 | 89 | 321 | 2 | 224 | 3.09e-109 | 317 |
| MS.gene39406.t1 | AT1G03550 | 60.385 | 260 | 76 | 2 | 3 | 262 | 2 | 234 | 2.13e-108 | 316 |
| MS.gene39406.t1 | AT1G03550 | 62.551 | 243 | 64 | 2 | 3 | 245 | 2 | 217 | 9.30e-104 | 303 |
| MS.gene39406.t1 | AT1G03550 | 65.909 | 220 | 65 | 1 | 102 | 321 | 15 | 224 | 4.85e-102 | 299 |
| MS.gene39406.t1 | AT1G03550 | 61.991 | 221 | 57 | 2 | 3 | 223 | 2 | 195 | 7.61e-96 | 282 |
Find 72 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGCATTTACTACATATT+TGG | 0.085998 | 4.2:-21629103 | MS.gene39406:CDS |
| ACAGAAAGTGCTTTGAAATT+TGG | 0.141807 | 4.2:-21628421 | MS.gene39406:CDS |
| GCAATGTCGTGATGGATAAT+TGG | 0.196761 | 4.2:+21629162 | None:intergenic |
| GCCATTATCTACTTCATATC+AGG | 0.219332 | 4.2:-21628634 | MS.gene39406:CDS |
| CCTGCTGATTATAATAATTA+TGG | 0.242414 | 4.2:-21630352 | MS.gene39406:CDS |
| GATAAGCATTTGGGTTATTC+AGG | 0.247223 | 4.2:-21627725 | MS.gene39406:intron |
| TGTTACTGCCGCTTGGATTA+AGG | 0.263486 | 4.2:-21628939 | MS.gene39406:CDS |
| GATTATAATAATTATGGCTT+TGG | 0.323050 | 4.2:-21630346 | MS.gene39406:CDS |
| TGGAAACGTTGATAAGCATT+TGG | 0.329849 | 4.2:-21627735 | MS.gene39406:CDS |
| TTGGCAGGTGGAACACTTCC+AGG | 0.333344 | 4.2:+21630406 | None:intergenic |
| ATAGACAACTCTACTTTGAT+TGG | 0.339286 | 4.2:-21627958 | MS.gene39406:CDS |
| TCTTCTCAAATCAGCTTCCT+TGG | 0.342585 | 4.2:+21630126 | None:intergenic |
| CGACATTGCTAATGAAATTC+CGG | 0.348677 | 4.2:-21629148 | MS.gene39406:CDS |
| CACCACCACTGTAGTTTGAT+TGG | 0.353619 | 4.2:+21631230 | None:intergenic |
| GTTGCATTTACTACATATTT+GGG | 0.367478 | 4.2:-21629102 | MS.gene39406:intron |
| GTTACTGCCGCTTGGATTAA+GGG | 0.381019 | 4.2:-21628938 | MS.gene39406:CDS |
| TCAAATCAGCTTCCTTGGAT+TGG | 0.397438 | 4.2:+21630131 | None:intergenic |
| CAGCTATAACATTCCACAAT+AGG | 0.403682 | 4.2:+21628960 | None:intergenic |
| CAATGTCGTGATGGATAATT+GGG | 0.404575 | 4.2:+21629163 | None:intergenic |
| TAGACAACTCTACTTTGATT+GGG | 0.415020 | 4.2:-21627957 | MS.gene39406:CDS |
| GGAAACGTTGATAAGCATTT+GGG | 0.415274 | 4.2:-21627734 | MS.gene39406:CDS |
| AAGGAAGAACTTACAGAAAA+GGG | 0.434384 | 4.2:+21632328 | None:intergenic |
| AAATGCTTATCAACGTTTCC+AGG | 0.442725 | 4.2:+21627737 | None:intergenic |
| TTAACTTCTTCTTCATCAAA+GGG | 0.448107 | 4.2:+21632352 | None:intergenic |
| TACTTCATATCAGGGGTACC+TGG | 0.455209 | 4.2:-21628625 | MS.gene39406:CDS |
| CCCTGATATGAAGTAGATAA+TGG | 0.455504 | 4.2:+21628633 | None:intergenic |
| AAAGGAAGAACTTACAGAAA+AGG | 0.471385 | 4.2:+21632327 | None:intergenic |
| GTTAACTTCTTCTTCATCAA+AGG | 0.471618 | 4.2:+21632351 | None:intergenic |
| TTATAGCTGTTACTGCCGCT+TGG | 0.474085 | 4.2:-21628946 | MS.gene39406:CDS |
| GTAAGGCTGCTGAGATGAAA+CGG | 0.481306 | 4.2:-21627558 | MS.gene39406:CDS |
| TTGTTCTTGAGGAAAAGAAT+TGG | 0.481456 | 4.2:-21629197 | MS.gene39406:CDS |
| TTATTATAATCAGCAGGCTC+TGG | 0.486525 | 4.2:+21630358 | None:intergenic |
| TGATTTGAGAAGAAGGGAAC+AGG | 0.488053 | 4.2:-21630116 | MS.gene39406:intron |
| AGGAAGCTGATTTGAGAAGA+AGG | 0.491892 | 4.2:-21630123 | MS.gene39406:CDS |
| CTAACAGGAACCAGCTGCAA+GGG | 0.502793 | 4.2:-21631266 | MS.gene39406:intron |
| AGATGAAACGGGACGTTGCA+AGG | 0.512415 | 4.2:-21627546 | MS.gene39406:CDS |
| TACATGTACTTCCGCGGAAG+TGG | 0.512831 | 4.2:-21627580 | MS.gene39406:CDS |
| GACTAGTGGCGTGCCTATTG+TGG | 0.513746 | 4.2:-21628973 | MS.gene39406:CDS |
| GTACTTCCGCGGAAGTGGTA+AGG | 0.515999 | 4.2:-21627575 | MS.gene39406:CDS |
| CCATTATCTACTTCATATCA+GGG | 0.537386 | 4.2:-21628633 | MS.gene39406:CDS |
| AAAGTGCTTTGAAATTTGGA+TGG | 0.542574 | 4.2:-21628417 | MS.gene39406:CDS |
| CCATAATTATTATAATCAGC+AGG | 0.544102 | 4.2:+21630352 | None:intergenic |
| GGAAGCTGATTTGAGAAGAA+GGG | 0.546544 | 4.2:-21630122 | MS.gene39406:CDS |
| TGCAGCTGGAATTGTTCTTG+AGG | 0.551923 | 4.2:-21629208 | MS.gene39406:intron |
| ATCGTCACAGATCTCATGGC+TGG | 0.555595 | 4.2:-21632391 | None:intergenic |
| TAAGGCTGCTGAGATGAAAC+GGG | 0.555749 | 4.2:-21627557 | MS.gene39406:CDS |
| TTTCCTTTGAAAACTATAGG+AGG | 0.556106 | 4.2:+21628220 | None:intergenic |
| TCAGCAGGCTCTGGCTCAAG+AGG | 0.572777 | 4.2:+21630367 | None:intergenic |
| TACCACAGAACATATGCTCC+AGG | 0.578297 | 4.2:+21628607 | None:intergenic |
| TTTCATTAGCAATGTCGTGA+TGG | 0.578986 | 4.2:+21629154 | None:intergenic |
| GATGAAACGGGACGTTGCAA+GGG | 0.579861 | 4.2:-21627545 | MS.gene39406:CDS |
| GCTGTATCATGCAGGACTAG+TGG | 0.591145 | 4.2:-21628987 | MS.gene39406:intron |
| TTCTGCTTACAGGTTCACAT+AGG | 0.596304 | 4.2:-21628268 | MS.gene39406:intron |
| GGAGAAGGAACTCCAATCCA+AGG | 0.597039 | 4.2:-21630143 | MS.gene39406:CDS |
| GCCGCTTGGATTAAGGGTGA+AGG | 0.598277 | 4.2:-21628932 | MS.gene39406:intron |
| TACCTGGAGCATATGTTCTG+TGG | 0.610432 | 4.2:-21628609 | MS.gene39406:CDS |
| AGAGTTGTCTATCACATCGA+TGG | 0.612681 | 4.2:+21627969 | None:intergenic |
| ACTAACAGGAACCAGCTGCA+AGG | 0.617019 | 4.2:-21631267 | MS.gene39406:intron |
| AGACAACTCTACTTTGATTG+GGG | 0.620543 | 4.2:-21627956 | MS.gene39406:intron |
| CATACCGTTGATGTATCAAG+AGG | 0.630477 | 4.2:+21630307 | None:intergenic |
| ACCTTCACCCTTAATCCAAG+CGG | 0.633392 | 4.2:+21628931 | None:intergenic |
| AGGAAGAACTTACAGAAAAG+GGG | 0.636378 | 4.2:+21632329 | None:intergenic |
| AGCCAATCAAACTACAGTGG+TGG | 0.647558 | 4.2:-21631232 | MS.gene39406:CDS |
| AAAGAAGAAGCTGCTGCACG+AGG | 0.652474 | 4.2:-21629561 | MS.gene39406:intron |
| ATGAAACGGGACGTTGCAAG+GGG | 0.655213 | 4.2:-21627544 | MS.gene39406:CDS |
| TAACAGGAACCAGCTGCAAG+GGG | 0.655833 | 4.2:-21631265 | MS.gene39406:intron |
| TAACTTCTTCTTCATCAAAG+GGG | 0.656707 | 4.2:+21632353 | None:intergenic |
| CAGCAGCCTTACCACTTCCG+CGG | 0.662593 | 4.2:+21627569 | None:intergenic |
| CAAGTATACATGTACTTCCG+CGG | 0.676518 | 4.2:-21627586 | MS.gene39406:CDS |
| TATACCTCTTGATACATCAA+CGG | 0.679523 | 4.2:-21630311 | MS.gene39406:intron |
| CATTATCTACTTCATATCAG+GGG | 0.696824 | 4.2:-21628632 | MS.gene39406:CDS |
| TCAAGCCAATCAAACTACAG+TGG | 0.718625 | 4.2:-21631235 | MS.gene39406:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGAAAAATTTGTAAATTT+TGG | - | chr4.2:21631801-21631820 | MS.gene39406:intron | 10.0% |
| !!! | ATTTTTATTATTTTCATATG+GGG | - | chr4.2:21629155-21629174 | MS.gene39406:CDS | 10.0% |
| !!! | GAATTTTTATTATTTTCATA+TGG | - | chr4.2:21629153-21629172 | MS.gene39406:CDS | 10.0% |
| !! | AAAAAGATTTGCAAAATAAT+AGG | + | chr4.2:21629013-21629032 | None:intergenic | 15.0% |
| !! | TAAACAATTGAATTTGAAAA+GGG | + | chr4.2:21630422-21630441 | None:intergenic | 15.0% |
| !! | TATCATATCTTACAAAAAAA+TGG | + | chr4.2:21629382-21629401 | None:intergenic | 15.0% |
| !! | TCATTTATATAATCTAATGT+TGG | - | chr4.2:21631868-21631887 | MS.gene39406:intron | 15.0% |
| !! | TGAACATAAATAATTATAAC+TGG | + | chr4.2:21628728-21628747 | None:intergenic | 15.0% |
| !!! | ATTATTTTGCAAATCTTTTT+AGG | - | chr4.2:21629013-21629032 | MS.gene39406:intron | 15.0% |
| !!! | CAATTTGAAATTAAAATAGA+GGG | + | chr4.2:21628043-21628062 | None:intergenic | 15.0% |
| !!! | TCAATTTGAAATTAAAATAG+AGG | + | chr4.2:21628044-21628063 | None:intergenic | 15.0% |
| !!! | TTATTTTCCATTTCAATATT+AGG | - | chr4.2:21629719-21629738 | MS.gene39406:intron | 15.0% |
| !!! | TTGTTTTAGTTGTTAAATTT+TGG | - | chr4.2:21627705-21627724 | MS.gene39406:intron | 15.0% |
| !!! | TTTATATAATTTCTGAAGTT+TGG | - | chr4.2:21630062-21630081 | MS.gene39406:intron | 15.0% |
| !! | ATAAGATCAAAATGATTTAC+AGG | + | chr4.2:21629436-21629455 | None:intergenic | 20.0% |
| !! | ATAATTCATTACAAAGTAGT+GGG | + | chr4.2:21629316-21629335 | None:intergenic | 20.0% |
| !! | ATATTAGGATTTGAAAAAGA+AGG | - | chr4.2:21629734-21629753 | MS.gene39406:intron | 20.0% |
| !! | GAATGATTTAGTAGTTTATT+TGG | - | chr4.2:21630392-21630411 | MS.gene39406:CDS | 20.0% |
| !! | GATTATAATAATTATGGCTT+TGG | - | chr4.2:21629552-21629571 | MS.gene39406:intron | 20.0% |
| !! | GTAAACAATTGAATTTGAAA+AGG | + | chr4.2:21630423-21630442 | None:intergenic | 20.0% |
| !! | TATAATTCATTACAAAGTAG+TGG | + | chr4.2:21629317-21629336 | None:intergenic | 20.0% |
| !! | TATGGCTTAAGTTATATAAA+AGG | + | chr4.2:21631421-21631440 | None:intergenic | 20.0% |
| !! | TTATTTATTTATCCAAATGC+AGG | - | chr4.2:21630303-21630322 | MS.gene39406:intron | 20.0% |
| !! | TTCAAATCCTAATATTGAAA+TGG | + | chr4.2:21629729-21629748 | None:intergenic | 20.0% |
| !! | TTCTGAACAAATATAAATAC+AGG | + | chr4.2:21630375-21630394 | None:intergenic | 20.0% |
| !! | TTTATGCATGTAAATATGAA+TGG | - | chr4.2:21628847-21628866 | MS.gene39406:intron | 20.0% |
| !!! | AAGTTTTGATTTTTTGAACT+GGG | - | chr4.2:21627610-21627629 | MS.gene39406:CDS | 20.0% |
| !!! | ATATAAAAGGAGGTTTTTTT+TGG | - | chr4.2:21631000-21631019 | MS.gene39406:intron | 20.0% |
| !!! | ATATGATCTATTTGAAGTTA+GGG | - | chr4.2:21628505-21628524 | MS.gene39406:intron | 20.0% |
| !!! | GTTTTAATGTTGTTTTGTTT+TGG | - | chr4.2:21627847-21627866 | MS.gene39406:intron | 20.0% |
| !!! | TACTATGTTTTCCTTAATTT+TGG | - | chr4.2:21628603-21628622 | MS.gene39406:CDS | 20.0% |
| !!! | TGATTAAGGATTTTAAAACT+CGG | - | chr4.2:21628540-21628559 | MS.gene39406:intron | 20.0% |
| !!! | TTTGCACTATATTTTGATTT+TGG | - | chr4.2:21628016-21628035 | MS.gene39406:intron | 20.0% |
| ! | AACAATTCAGAAGTTTACTT+TGG | + | chr4.2:21632086-21632105 | None:intergenic | 25.0% |
| ! | AATAACCATTGAAACATTTG+TGG | - | chr4.2:21629216-21629235 | MS.gene39406:intron | 25.0% |
| ! | AATAATGATGCATAAAGAAG+AGG | - | chr4.2:21628944-21628963 | MS.gene39406:CDS | 25.0% |
| ! | AATTGTTTCAATCCGAAATT+AGG | - | chr4.2:21630104-21630123 | MS.gene39406:intron | 25.0% |
| ! | ACAAATGTTTCAATGGTTAT+TGG | + | chr4.2:21629217-21629236 | None:intergenic | 25.0% |
| ! | ATCTTGATTTCATCCTTTAA+AGG | - | chr4.2:21627651-21627670 | MS.gene39406:intron | 25.0% |
| ! | CATAACTTATGCACATTAAT+TGG | + | chr4.2:21631570-21631589 | None:intergenic | 25.0% |
| ! | CCATAATTATTATAATCAGC+AGG | + | chr4.2:21629549-21629568 | None:intergenic | 25.0% |
| ! | CTAGATACTAGTAATTAACA+GGG | + | chr4.2:21630262-21630281 | None:intergenic | 25.0% |
| ! | CTTTATTAGAATTTGGATTG+GGG | + | chr4.2:21628426-21628445 | None:intergenic | 25.0% |
| ! | GAGTTTAGATATATAAAAGG+AGG | - | chr4.2:21630990-21631009 | MS.gene39406:intron | 25.0% |
| ! | GGTGAGTTTAGATATATAAA+AGG | - | chr4.2:21630987-21631006 | MS.gene39406:intron | 25.0% |
| ! | GTTGCATTTACTACATATTT+GGG | - | chr4.2:21630796-21630815 | MS.gene39406:intron | 25.0% |
| ! | TACCTAAAAACACGATATAA+TGG | + | chr4.2:21631321-21631340 | None:intergenic | 25.0% |
| ! | TATTTCAACAGCTATTTGAT+AGG | + | chr4.2:21628245-21628264 | None:intergenic | 25.0% |
| ! | TCAAAACTTCAAGAAAAAGA+AGG | + | chr4.2:21627599-21627618 | None:intergenic | 25.0% |
| ! | TCTAGATACTAGTAATTAAC+AGG | + | chr4.2:21630263-21630282 | None:intergenic | 25.0% |
| ! | TCTTGATTTCATCCTTTAAA+GGG | - | chr4.2:21627652-21627671 | MS.gene39406:intron | 25.0% |
| ! | TGAATGAGCTTAAAGATAAA+CGG | + | chr4.2:21632223-21632242 | None:intergenic | 25.0% |
| ! | TGTTGCATTTACTACATATT+TGG | - | chr4.2:21630795-21630814 | MS.gene39406:intron | 25.0% |
| ! | TTAACTTCTTCTTCATCAAA+GGG | + | chr4.2:21627549-21627568 | None:intergenic | 25.0% |
| ! | TTCTGCTTAATTCTTCTAAT+AGG | - | chr4.2:21630651-21630670 | MS.gene39406:intron | 25.0% |
| ! | TTGACATAGGTGTAAAAATT+TGG | - | chr4.2:21631235-21631254 | MS.gene39406:CDS | 25.0% |
| ! | TTGTGTAACTATAACTGTAT+TGG | - | chr4.2:21627985-21628004 | MS.gene39406:CDS | 25.0% |
| ! | TTTGTGGAGTAAAATTATTG+AGG | - | chr4.2:21629232-21629251 | MS.gene39406:intron | 25.0% |
| !! | AAAAGGTGTATATAAATGGA+AGG | - | chr4.2:21628360-21628379 | MS.gene39406:intron | 25.0% |
| !! | ATTTTCTACTTCATTGGATT+TGG | - | chr4.2:21632129-21632148 | MS.gene39406:intron | 25.0% |
| !! | CATATTTAGAATCAAGAGTA+TGG | + | chr4.2:21631439-21631458 | None:intergenic | 25.0% |
| !! | CCTGCTGATTATAATAATTA+TGG | - | chr4.2:21629546-21629565 | MS.gene39406:intron | 25.0% |
| !! | CTTGAAAAGGTGTATATAAA+TGG | - | chr4.2:21628356-21628375 | MS.gene39406:intron | 25.0% |
| !! | GATATGATCTATTTGAAGTT+AGG | - | chr4.2:21628504-21628523 | MS.gene39406:intron | 25.0% |
| !! | GCTTTATTAGAATTTGGATT+GGG | + | chr4.2:21628427-21628446 | None:intergenic | 25.0% |
| !! | GTTAGTTTAGACCAAAATTA+AGG | + | chr4.2:21628617-21628636 | None:intergenic | 25.0% |
| !! | TATGATCTATTTGAAGTTAG+GGG | - | chr4.2:21628506-21628525 | MS.gene39406:intron | 25.0% |
| !! | TTGTAGATTTTCTACTTCAT+TGG | - | chr4.2:21632123-21632142 | MS.gene39406:intron | 25.0% |
| !! | TTTTTACAATCTGAACTCTA+AGG | - | chr4.2:21629339-21629358 | MS.gene39406:intron | 25.0% |
| !!! | AGCTTTATTAGAATTTGGAT+TGG | + | chr4.2:21628428-21628447 | None:intergenic | 25.0% |
| !!! | GAAGTTTTGATTTTTTGAAC+TGG | - | chr4.2:21627609-21627628 | MS.gene39406:CDS | 25.0% |
| !!! | GAGTATCTATTTTTAGTTGT+TGG | - | chr4.2:21627793-21627812 | MS.gene39406:intron | 25.0% |
| !!! | GATTTTCCTTTGAAAACTAT+AGG | + | chr4.2:21631684-21631703 | None:intergenic | 25.0% |
| !!! | GCATTAGCTTTATTAGAATT+TGG | + | chr4.2:21628433-21628452 | None:intergenic | 25.0% |
| !!! | TAATTTTGGTCTAAACTAAC+AGG | - | chr4.2:21628617-21628636 | MS.gene39406:CDS | 25.0% |
| !!! | TATTTTTTAGAATTCAGCTC+AGG | - | chr4.2:21627952-21627971 | MS.gene39406:intron | 25.0% |
| !!! | TTTTTAAAATGTCAGAATCC+TGG | - | chr4.2:21629474-21629493 | MS.gene39406:intron | 25.0% |
| AAAGGAAGAACTTACAGAAA+AGG | + | chr4.2:21627574-21627593 | None:intergenic | 30.0% | |
| AACAGAAATATGGATATGGA+AGG | + | chr4.2:21629934-21629953 | None:intergenic | 30.0% | |
| AACATAGTAAATAAGTCAGC+AGG | + | chr4.2:21628592-21628611 | None:intergenic | 30.0% | |
| AAGACAGCATGATTTAATGA+GGG | + | chr4.2:21630167-21630186 | None:intergenic | 30.0% | |
| AAGGAAGAACTTACAGAAAA+GGG | + | chr4.2:21627573-21627592 | None:intergenic | 30.0% | |
| AAGTCACAAGTAACAACAAT+AGG | - | chr4.2:21628776-21628795 | MS.gene39406:intron | 30.0% | |
| AAGTTTATAAACCCTTATGC+AGG | + | chr4.2:21630235-21630254 | None:intergenic | 30.0% | |
| ACAGAAATATGGATATGGAA+GGG | + | chr4.2:21629933-21629952 | None:intergenic | 30.0% | |
| ACATAGTAAATAAGTCAGCA+GGG | + | chr4.2:21628591-21628610 | None:intergenic | 30.0% | |
| ACATGAATCAATGCATGAAT+AGG | + | chr4.2:21630021-21630040 | None:intergenic | 30.0% | |
| ACTAGTATCTAGAAATTCAC+AGG | - | chr4.2:21630270-21630289 | MS.gene39406:intron | 30.0% | |
| AGACCTTAATAAAATTCTGC+AGG | + | chr4.2:21630503-21630522 | None:intergenic | 30.0% | |
| AGACTTCTCAAACAGAAATA+TGG | + | chr4.2:21629944-21629963 | None:intergenic | 30.0% | |
| AGATTTACTCCTGAAATAAG+TGG | - | chr4.2:21629993-21630012 | MS.gene39406:intron | 30.0% | |
| ATAGACAACTCTACTTTGAT+TGG | - | chr4.2:21631940-21631959 | MS.gene39406:intron | 30.0% | |
| ATTATGAAACTGCAACAAGT+TGG | - | chr4.2:21631391-21631410 | MS.gene39406:intron | 30.0% | |
| CAAGTAACAACAATAGGTTA+TGG | - | chr4.2:21628782-21628801 | MS.gene39406:intron | 30.0% | |
| CAGAACTAAATTTGTACAGA+AGG | + | chr4.2:21630636-21630655 | None:intergenic | 30.0% | |
| CATGCCATAACAAACAAAAA+GGG | + | chr4.2:21628096-21628115 | None:intergenic | 30.0% | |
| CATTATAAGTCGGATTTGTA+GGG | - | chr4.2:21628390-21628409 | MS.gene39406:intron | 30.0% | |
| CATTATCTACTTCATATCAG+GGG | - | chr4.2:21631266-21631285 | MS.gene39406:intron | 30.0% | |
| CCATTATCTACTTCATATCA+GGG | - | chr4.2:21631265-21631284 | MS.gene39406:intron | 30.0% | |
| CTAAAGTTAAATTGTATCGC+TGG | + | chr4.2:21629278-21629297 | None:intergenic | 30.0% | |
| CTCAAACAGAAATATGGATA+TGG | + | chr4.2:21629938-21629957 | None:intergenic | 30.0% | |
| CTCTAATGCGATCTAAATTT+GGG | + | chr4.2:21628222-21628241 | None:intergenic | 30.0% | |
| GAAATGAGAAATGAAAACAG+AGG | + | chr4.2:21629902-21629921 | None:intergenic | 30.0% | |
| GGGATAAGAGTTTATGATTA+AGG | - | chr4.2:21628526-21628545 | MS.gene39406:intron | 30.0% | |
| GTTAACTTCTTCTTCATCAA+AGG | + | chr4.2:21627550-21627569 | None:intergenic | 30.0% | |
| TAACTTCTTCTTCATCAAAG+GGG | + | chr4.2:21627548-21627567 | None:intergenic | 30.0% | |
| TAGACAACTCTACTTTGATT+GGG | - | chr4.2:21631941-21631960 | MS.gene39406:intron | 30.0% | |
| TATACCTCTTGATACATCAA+CGG | - | chr4.2:21629587-21629606 | MS.gene39406:intron | 30.0% | |
| TATGCATTGTAAGAAAACCA+TGG | + | chr4.2:21632261-21632280 | None:intergenic | 30.0% | |
| TCATGCCATAACAAACAAAA+AGG | + | chr4.2:21628097-21628116 | None:intergenic | 30.0% | |
| TCATTATAAGTCGGATTTGT+AGG | - | chr4.2:21628389-21628408 | MS.gene39406:intron | 30.0% | |
| TCTTGTTAAACGTAGTATGA+TGG | + | chr4.2:21629976-21629995 | None:intergenic | 30.0% | |
| TGTTTATTCACACTGATACA+GGG | - | chr4.2:21631894-21631913 | MS.gene39406:intron | 30.0% | |
| TTACTCCACAAATGTTTCAA+TGG | + | chr4.2:21629224-21629243 | None:intergenic | 30.0% | |
| TTATGAAACTGCAACAAGTT+GGG | - | chr4.2:21631392-21631411 | MS.gene39406:intron | 30.0% | |
| TTCAAGAAAAAGAAGGTGAA+AGG | + | chr4.2:21627592-21627611 | None:intergenic | 30.0% | |
| TTGGTCACATTTGCAATATT+TGG | + | chr4.2:21632067-21632086 | None:intergenic | 30.0% | |
| TTGTTCTTGAGGAAAAGAAT+TGG | - | chr4.2:21630701-21630720 | MS.gene39406:intron | 30.0% | |
| ! | AGGTGTAAAAATTTGGTTTC+TGG | - | chr4.2:21631242-21631261 | MS.gene39406:CDS | 30.0% |
| ! | ATGATACAGCTTTTAATCAG+TGG | + | chr4.2:21630901-21630920 | None:intergenic | 30.0% |
| ! | GTAGTGGGATTTATAAAAAC+TGG | + | chr4.2:21629301-21629320 | None:intergenic | 30.0% |
| ! | GTCCATTATATCGTGTTTTT+AGG | - | chr4.2:21631316-21631335 | MS.gene39406:intron | 30.0% |
| ! | GTGTCTTTTTGTTCACTTTA+CGG | - | chr4.2:21629821-21629840 | MS.gene39406:intron | 30.0% |
| ! | TACATTGCTATTACTGTTTG+AGG | - | chr4.2:21630440-21630459 | MS.gene39406:intron | 30.0% |
| ! | TATTTGGAATAAGATCGTGT+AGG | + | chr4.2:21632051-21632070 | None:intergenic | 30.0% |
| ! | TGATGGATAATTGGGAAAAA+TGG | + | chr4.2:21630730-21630749 | None:intergenic | 30.0% |
| ! | TGTTTCTGTTGACATTCAAT+TGG | - | chr4.2:21630476-21630495 | MS.gene39406:intron | 30.0% |
| ! | TTTCCTTTGAAAACTATAGG+AGG | + | chr4.2:21631681-21631700 | None:intergenic | 30.0% |
| !! | AAAGTGCTTTGAAATTTGGA+TGG | - | chr4.2:21631481-21631500 | MS.gene39406:intron | 30.0% |
| !! | AATGCCCTTTTTGTTTGTTA+TGG | - | chr4.2:21628089-21628108 | MS.gene39406:intron | 30.0% |
| !! | ACAGAAAGTGCTTTGAAATT+TGG | - | chr4.2:21631477-21631496 | MS.gene39406:intron | 30.0% |
| !! | TGCAATTTTTGAAGATGAAC+CGG | + | chr4.2:21630772-21630791 | None:intergenic | 30.0% |
| !! | TTTCTGTATTGATGATGATG+TGG | - | chr4.2:21628065-21628084 | MS.gene39406:intron | 30.0% |
| !!! | CTTTTTCGACTTCATTTTTG+TGG | - | chr4.2:21631755-21631774 | MS.gene39406:intron | 30.0% |
| !!! | GTTGTTAAATTTTGGTTGAC+TGG | - | chr4.2:21627713-21627732 | MS.gene39406:intron | 30.0% |
| !!! | TTAAATTTTGGTTGACTGGT+TGG | - | chr4.2:21627717-21627736 | MS.gene39406:intron | 30.0% |
| !!! | TTGACATTTTATTTTGCAGC+TGG | - | chr4.2:21630676-21630695 | MS.gene39406:intron | 30.0% |
| AAATGCTTATCAACGTTTCC+AGG | + | chr4.2:21632164-21632183 | None:intergenic | 35.0% | |
| AAGGTGATAGATGTGACATT+AGG | + | chr4.2:21628164-21628183 | None:intergenic | 35.0% | |
| AATGCGATCTAAATTTGGGT+TGG | + | chr4.2:21628218-21628237 | None:intergenic | 35.0% | |
| ACACAATACTCAAGAACCAA+TGG | + | chr4.2:21630859-21630878 | None:intergenic | 35.0% | |
| ACATCTATCACCTTACTAGT+CGG | - | chr4.2:21628170-21628189 | MS.gene39406:intron | 35.0% | |
| AGAAATATGGATATGGAAGG+GGG | + | chr4.2:21629931-21629950 | None:intergenic | 35.0% | |
| AGACAACTCTACTTTGATTG+GGG | - | chr4.2:21631942-21631961 | MS.gene39406:intron | 35.0% | |
| AGACAGCATGATTTAATGAG+GGG | + | chr4.2:21630166-21630185 | None:intergenic | 35.0% | |
| AGGAAGAACTTACAGAAAAG+GGG | + | chr4.2:21627572-21627591 | None:intergenic | 35.0% | |
| AGGCATCTCTCATTATAAGT+CGG | - | chr4.2:21628380-21628399 | MS.gene39406:intron | 35.0% | |
| AGTTAAATTGTATCGCTGGA+TGG | + | chr4.2:21629274-21629293 | None:intergenic | 35.0% | |
| AGTTAACTTTGCCTGCATAA+GGG | - | chr4.2:21630221-21630240 | MS.gene39406:intron | 35.0% | |
| ATCTCAGTAAATATCCACTG+AGG | + | chr4.2:21629857-21629876 | None:intergenic | 35.0% | |
| ATTGAGTGCTTAGAGTAAGT+TGG | + | chr4.2:21631718-21631737 | None:intergenic | 35.0% | |
| CAGAAATATGGATATGGAAG+GGG | + | chr4.2:21629932-21629951 | None:intergenic | 35.0% | |
| CAGCTATAACATTCCACAAT+AGG | + | chr4.2:21630941-21630960 | None:intergenic | 35.0% | |
| CAGTGGATATTTACTGAGAT+TGG | - | chr4.2:21629857-21629876 | MS.gene39406:intron | 35.0% | |
| CAGTTAGCATTTAAAAGCCA+TGG | - | chr4.2:21632241-21632260 | MS.gene39406:intron | 35.0% | |
| CCCTGATATGAAGTAGATAA+TGG | + | chr4.2:21631268-21631287 | None:intergenic | 35.0% | |
| CGACATTGCTAATGAAATTC+CGG | - | chr4.2:21630750-21630769 | MS.gene39406:intron | 35.0% | |
| CTGTTTATTCACACTGATAC+AGG | - | chr4.2:21631893-21631912 | MS.gene39406:intron | 35.0% | |
| GAAGACAGCATGATTTAATG+AGG | + | chr4.2:21630168-21630187 | None:intergenic | 35.0% | |
| GAATAGGATCCACTTATTTC+AGG | + | chr4.2:21630005-21630024 | None:intergenic | 35.0% | |
| GATTAAAAGCTGTATCATGC+AGG | - | chr4.2:21630903-21630922 | MS.gene39406:intron | 35.0% | |
| GCCATTATCTACTTCATATC+AGG | - | chr4.2:21631264-21631283 | MS.gene39406:intron | 35.0% | |
| GCTCTAATGCGATCTAAATT+TGG | + | chr4.2:21628223-21628242 | None:intergenic | 35.0% | |
| GGATTTGAAAAAGAAGGAGA+AGG | - | chr4.2:21629740-21629759 | MS.gene39406:intron | 35.0% | |
| GTAATCCTCTTCATTGTTCT+TGG | - | chr4.2:21630822-21630841 | MS.gene39406:intron | 35.0% | |
| GTCTCACATTAGATGTGATA+CGG | - | chr4.2:21628333-21628352 | MS.gene39406:intron | 35.0% | |
| GTCTCTTTGATTCTTTGTGT+AGG | - | chr4.2:21627815-21627834 | MS.gene39406:intron | 35.0% | |
| GTTTATTCACACTGATACAG+GGG | - | chr4.2:21631895-21631914 | MS.gene39406:intron | 35.0% | |
| TCAAGAACCAATGGCATAAT+TGG | + | chr4.2:21630850-21630869 | None:intergenic | 35.0% | |
| TCCAGAGATCAACCTAATTT+CGG | + | chr4.2:21630119-21630138 | None:intergenic | 35.0% | |
| TCTCAGTAAATATCCACTGA+GGG | + | chr4.2:21629856-21629875 | None:intergenic | 35.0% | |
| TGACATGAGTGGTTCAATAA+TGG | + | chr4.2:21628269-21628288 | None:intergenic | 35.0% | |
| TGGATAATTGGGAAAAATGG+TGG | + | chr4.2:21630727-21630746 | None:intergenic | 35.0% | |
| TTATTATAATCAGCAGGCTC+TGG | + | chr4.2:21629543-21629562 | None:intergenic | 35.0% | |
| TTTCATTAGCAATGTCGTGA+TGG | + | chr4.2:21630747-21630766 | None:intergenic | 35.0% | |
| TTTCTGTCCTGCAATGAAAA+AGG | + | chr4.2:21631464-21631483 | None:intergenic | 35.0% | |
| ! | AGGTGAAAGCCTTGAATTTT+TGG | + | chr4.2:21629514-21629533 | None:intergenic | 35.0% |
| ! | AGTCTGAAACAACCCTTTAA+AGG | + | chr4.2:21627667-21627686 | None:intergenic | 35.0% |
| ! | ATTGCTATTACTGTTTGAGG+TGG | - | chr4.2:21630443-21630462 | MS.gene39406:intron | 35.0% |
| ! | GATAAGCATTTGGGTTATTC+AGG | - | chr4.2:21632173-21632192 | MS.gene39406:intron | 35.0% |
| ! | GGAAACGTTGATAAGCATTT+GGG | - | chr4.2:21632164-21632183 | MS.gene39406:intron | 35.0% |
| ! | GGTCCTGCAGAATTTTATTA+AGG | - | chr4.2:21630497-21630516 | MS.gene39406:intron | 35.0% |
| ! | TGGAAACGTTGATAAGCATT+TGG | - | chr4.2:21632163-21632182 | MS.gene39406:intron | 35.0% |
| ! | TTGTTTCTTCTTCTGCTTAC+AGG | - | chr4.2:21631620-21631639 | MS.gene39406:intron | 35.0% |
| !! | AACATGGCTTTGTTTGACAT+AGG | - | chr4.2:21631222-21631241 | MS.gene39406:CDS | 35.0% |
| !! | ATATGCTCCTTTTTCATTGC+AGG | - | chr4.2:21631454-21631473 | MS.gene39406:intron | 35.0% |
| !! | CAATGTCGTGATGGATAATT+GGG | + | chr4.2:21630738-21630757 | None:intergenic | 35.0% |
| !! | GCTTTTCTGTGATGCTTTTT+AGG | - | chr4.2:21629113-21629132 | MS.gene39406:CDS | 35.0% |
| !! | GTGTGAGTCATTTTATATCG+CGG | - | chr4.2:21630875-21630894 | MS.gene39406:intron | 35.0% |
| !!! | ATAGCTGCTCACTTTTTCTT+TGG | - | chr4.2:21632278-21632297 | MS.gene39406:intron | 35.0% |
| AAGAAGGGAACAGGTATACA+TGG | - | chr4.2:21629791-21629810 | MS.gene39406:intron | 40.0% | |
| AAGCCTGAGCTGAATTCTAA+AGG | + | chr4.2:21627878-21627897 | None:intergenic | 40.0% | |
| ACCAATTGAGCTATGCTCAT+GGG | - | chr4.2:21631125-21631144 | MS.gene39406:intron | 40.0% | |
| ACCTCATAAGGCGAATAAGT+GGG | - | chr4.2:21631053-21631072 | MS.gene39406:intron | 40.0% | |
| AGAAACAAAAAGAGCCAAGC+AGG | + | chr4.2:21630557-21630576 | None:intergenic | 40.0% | |
| AGAAGGGAACAGGTATACAT+GGG | - | chr4.2:21629792-21629811 | MS.gene39406:intron | 40.0% | |
| AGAGTTGTCTATCACATCGA+TGG | + | chr4.2:21631932-21631951 | None:intergenic | 40.0% | |
| AGATGTGATACGGCTTGAAA+AGG | - | chr4.2:21628343-21628362 | MS.gene39406:intron | 40.0% | |
| ATGAGCATAGCTCAATTGGT+AGG | + | chr4.2:21631125-21631144 | None:intergenic | 40.0% | |
| ATGCTCATGGGGACTATAAA+AGG | - | chr4.2:21631137-21631156 | MS.gene39406:intron | 40.0% | |
| CAAGTATACATGTACTTCCG+CGG | - | chr4.2:21632312-21632331 | MS.gene39406:intron | 40.0% | |
| CAGTTAACTTTGCCTGCATA+AGG | - | chr4.2:21630220-21630239 | MS.gene39406:intron | 40.0% | |
| CATACCGTTGATGTATCAAG+AGG | + | chr4.2:21629594-21629613 | None:intergenic | 40.0% | |
| CTTGGTTCCAATTATGCCAT+TGG | - | chr4.2:21630840-21630859 | MS.gene39406:intron | 40.0% | |
| GGCTAGAAATTCACCTCATA+AGG | - | chr4.2:21631041-21631060 | MS.gene39406:intron | 40.0% | |
| TACCAATTGAGCTATGCTCA+TGG | - | chr4.2:21631124-21631143 | MS.gene39406:intron | 40.0% | |
| TCAAATCAGCTTCCTTGGAT+TGG | + | chr4.2:21629770-21629789 | None:intergenic | 40.0% | |
| TCAAGCCAATCAAACTACAG+TGG | - | chr4.2:21628663-21628682 | MS.gene39406:intron | 40.0% | |
| TCTTCTCAAATCAGCTTCCT+TGG | + | chr4.2:21629775-21629794 | None:intergenic | 40.0% | |
| TGAGCATAGCTCAATTGGTA+GGG | + | chr4.2:21631124-21631143 | None:intergenic | 40.0% | |
| TGATTTGAGAAGAAGGGAAC+AGG | - | chr4.2:21629782-21629801 | MS.gene39406:intron | 40.0% | |
| TGCATGTGATATGCAAGAGT+CGG | + | chr4.2:21631097-21631116 | None:intergenic | 40.0% | |
| TGGAACCAAGAACAATGAAG+AGG | + | chr4.2:21630830-21630849 | None:intergenic | 40.0% | |
| TTCCACCTGCCAAAAATTCA+AGG | - | chr4.2:21629502-21629521 | MS.gene39406:intron | 40.0% | |
| TTCTGCTTACAGGTTCACAT+AGG | - | chr4.2:21631630-21631649 | MS.gene39406:intron | 40.0% | |
| TTCTTGCAAGAATCGAACTG+AGG | - | chr4.2:21629686-21629705 | MS.gene39406:intron | 40.0% | |
| ! | AGAATTCAGCTCAGGCTTTT+AGG | - | chr4.2:21627880-21627899 | MS.gene39406:intron | 40.0% |
| ! | ATTTGGATTGGGGCTATCTT+AGG | + | chr4.2:21628416-21628435 | None:intergenic | 40.0% |
| ! | GAATTCAGCTCAGGCTTTTT+AGG | - | chr4.2:21627881-21627900 | MS.gene39406:intron | 40.0% |
| ! | GCTCCTCCTATAGTTTTCAA+AGG | - | chr4.2:21631675-21631694 | MS.gene39406:intron | 40.0% |
| ! | GTACTATGGTTGATGTGGTT+GGG | - | chr4.2:21627739-21627758 | MS.gene39406:CDS | 40.0% |
| ! | TACTATGGTTGATGTGGTTG+GGG | - | chr4.2:21627740-21627759 | MS.gene39406:CDS | 40.0% |
| ! | TGAGCTGAATTCTAAAGGCA+AGG | + | chr4.2:21627873-21627892 | None:intergenic | 40.0% |
| ! | TGGATTTGGATTTTTCTGCC+TGG | - | chr4.2:21632143-21632162 | MS.gene39406:intron | 40.0% |
| !! | AGGAAGCTGATTTGAGAAGA+AGG | - | chr4.2:21629775-21629794 | MS.gene39406:intron | 40.0% |
| !! | CAATCTGAACTCTAAGGTCT+AGG | - | chr4.2:21629345-21629364 | MS.gene39406:intron | 40.0% |
| !! | GCAATGTCGTGATGGATAAT+TGG | + | chr4.2:21630739-21630758 | None:intergenic | 40.0% |
| !! | GGAAGCTGATTTGAGAAGAA+GGG | - | chr4.2:21629776-21629795 | MS.gene39406:intron | 40.0% |
| !! | TCCGAAATTAGGTTGATCTC+TGG | - | chr4.2:21630115-21630134 | MS.gene39406:intron | 40.0% |
| !! | TTGCCTTTAGAATTCAGCTC+AGG | - | chr4.2:21627872-21627891 | MS.gene39406:intron | 40.0% |
| !!! | GAAAGCCTTGAATTTTTGGC+AGG | + | chr4.2:21629510-21629529 | None:intergenic | 40.0% |
| AAAGCCATGTTTCATGCGCA+TGG | + | chr4.2:21631213-21631232 | None:intergenic | 45.0% | |
| AATGCCATGCGCATGAAACA+TGG | - | chr4.2:21631206-21631225 | MS.gene39406:intron | 45.0% | |
| ACCTTCACCCTTAATCCAAG+CGG | + | chr4.2:21630970-21630989 | None:intergenic | 45.0% | |
| AGCCAATCAAACTACAGTGG+TGG | - | chr4.2:21628666-21628685 | MS.gene39406:intron | 45.0% | |
| CAATAGGTTATGGTCAGCAG+TGG | - | chr4.2:21628792-21628811 | MS.gene39406:intron | 45.0% | |
| CACCACCACTGTAGTTTGAT+TGG | + | chr4.2:21628671-21628690 | None:intergenic | 45.0% | |
| CACCTCATAAGGCGAATAAG+TGG | - | chr4.2:21631052-21631071 | MS.gene39406:intron | 45.0% | |
| CATGTGATATGCAAGAGTCG+GGG | + | chr4.2:21631095-21631114 | None:intergenic | 45.0% | |
| CCAATTGAGCTATGCTCATG+GGG | - | chr4.2:21631126-21631145 | MS.gene39406:intron | 45.0% | |
| CCTCATAAGGCGAATAAGTG+GGG | - | chr4.2:21631054-21631073 | MS.gene39406:intron | 45.0% | |
| GCATGTGATATGCAAGAGTC+GGG | + | chr4.2:21631096-21631115 | None:intergenic | 45.0% | |
| GTAAGGCTGCTGAGATGAAA+CGG | - | chr4.2:21632340-21632359 | MS.gene39406:intron | 45.0% | |
| TAAGGCTGCTGAGATGAAAC+GGG | - | chr4.2:21632341-21632360 | MS.gene39406:intron | 45.0% | |
| TACCACAGAACATATGCTCC+AGG | + | chr4.2:21631294-21631313 | None:intergenic | 45.0% | |
| TACCTGGAGCATATGTTCTG+TGG | - | chr4.2:21631289-21631308 | MS.gene39406:intron | 45.0% | |
| TGCAGCTGGAATTGTTCTTG+AGG | - | chr4.2:21630690-21630709 | MS.gene39406:intron | 45.0% | |
| TGTTTCATGCGCATGGCATT+AGG | + | chr4.2:21631206-21631225 | None:intergenic | 45.0% | |
| TTATAGCTGTTACTGCCGCT+TGG | - | chr4.2:21630952-21630971 | MS.gene39406:intron | 45.0% | |
| TTCGTCTCACTTCCTGCATT+TGG | + | chr4.2:21630318-21630337 | None:intergenic | 45.0% | |
| ! | ACGCTCTAGATATCCAATCC+TGG | - | chr4.2:21628288-21628307 | MS.gene39406:intron | 45.0% |
| ! | CGCACTAATTTTGTCCTGCT+TGG | - | chr4.2:21630540-21630559 | MS.gene39406:intron | 45.0% |
| ! | CGCTCTAGATATCCAATCCT+GGG | - | chr4.2:21628289-21628308 | MS.gene39406:intron | 45.0% |
| ! | GCATTTGGGTTATTCAGGTC+TGG | - | chr4.2:21632178-21632197 | MS.gene39406:intron | 45.0% |
| ! | GGTACTATGGTTGATGTGGT+TGG | - | chr4.2:21627738-21627757 | MS.gene39406:CDS | 45.0% |
| ! | GGTTGGTACTATGGTTGATG+TGG | - | chr4.2:21627734-21627753 | MS.gene39406:CDS | 45.0% |
| ! | GTTACTGCCGCTTGGATTAA+GGG | - | chr4.2:21630960-21630979 | MS.gene39406:intron | 45.0% |
| ! | TATCTAGAGCGTGACATGAG+TGG | + | chr4.2:21628280-21628299 | None:intergenic | 45.0% |
| ! | TGGTTGACTGGTTGGTACTA+TGG | - | chr4.2:21627725-21627744 | MS.gene39406:intron | 45.0% |
| ! | TGTTACTGCCGCTTGGATTA+AGG | - | chr4.2:21630959-21630978 | MS.gene39406:intron | 45.0% |
| !! | AAAACAGAGGAGAGCATCAG+AGG | + | chr4.2:21629889-21629908 | None:intergenic | 45.0% |
| !! | TACTTCATATCAGGGGTACC+TGG | - | chr4.2:21631273-21631292 | MS.gene39406:intron | 45.0% |
| !! | TGAATTTCTAGCCACTACGC+AGG | + | chr4.2:21631034-21631053 | None:intergenic | 45.0% |
| !!! | AGCCTTGAATTTTTGGCAGG+TGG | + | chr4.2:21629507-21629526 | None:intergenic | 45.0% |
| !!! | CTGCTCACTTTTTCTTTGGC+TGG | - | chr4.2:21632282-21632301 | MS.gene39406:intron | 45.0% |
| !!! | GTTGGGGAAACTGGTTTTTG+AGG | - | chr4.2:21627756-21627775 | MS.gene39406:CDS | 45.0% |
| !!! | AATTTTTATTATTTTCATAT+GGG | - | chr4.2:21629154-21629173 | MS.gene39406:CDS | 5.0% |
| AAAGAAGAAGCTGCTGCACG+AGG | - | chr4.2:21630337-21630356 | MS.gene39406:CDS | 50.0% | |
| ACTAACAGGAACCAGCTGCA+AGG | - | chr4.2:21628631-21628650 | MS.gene39406:CDS | 50.0% | |
| AGATGAAACGGGACGTTGCA+AGG | - | chr4.2:21632352-21632371 | MS.gene39406:CDS | 50.0% | |
| AGGCGAATAAGTGGGGAGTT+CGG | - | chr4.2:21631061-21631080 | MS.gene39406:intron | 50.0% | |
| ATGAAACGGGACGTTGCAAG+GGG | - | chr4.2:21632354-21632373 | MS.gene39406:CDS | 50.0% | |
| CCCCACTTATTCGCCTTATG+AGG | + | chr4.2:21631057-21631076 | None:intergenic | 50.0% | |
| CCCCATGAGCATAGCTCAAT+TGG | + | chr4.2:21631129-21631148 | None:intergenic | 50.0% | |
| CTAACAGGAACCAGCTGCAA+GGG | - | chr4.2:21628632-21628651 | MS.gene39406:CDS | 50.0% | |
| GATATCCAATCCTGGGTGTG+AGG | - | chr4.2:21628296-21628315 | MS.gene39406:intron | 50.0% | |
| GATGAAACGGGACGTTGCAA+GGG | - | chr4.2:21632353-21632372 | MS.gene39406:CDS | 50.0% | |
| GCTGTATCATGCAGGACTAG+TGG | - | chr4.2:21630911-21630930 | MS.gene39406:intron | 50.0% | |
| GGAGAAGGAACTCCAATCCA+AGG | - | chr4.2:21629755-21629774 | MS.gene39406:intron | 50.0% | |
| GTTGATGTGGTTGGGGAAAC+TGG | - | chr4.2:21627747-21627766 | MS.gene39406:CDS | 50.0% | |
| TAACAGGAACCAGCTGCAAG+GGG | - | chr4.2:21628633-21628652 | MS.gene39406:CDS | 50.0% | |
| TACATGTACTTCCGCGGAAG+TGG | - | chr4.2:21632318-21632337 | MS.gene39406:intron | 50.0% | |
| TAGGTTATGGTCAGCAGTGG+AGG | - | chr4.2:21628795-21628814 | MS.gene39406:intron | 50.0% | |
| TATGGTCAGCAGTGGAGGTA+GGG | - | chr4.2:21628800-21628819 | MS.gene39406:intron | 50.0% | |
| TTATGGTCAGCAGTGGAGGT+AGG | - | chr4.2:21628799-21628818 | MS.gene39406:intron | 50.0% | |
| ! | AGAGTAAGTTGGCGTACGTC+AGG | + | chr4.2:21631707-21631726 | None:intergenic | 50.0% |
| ! | CTCCACAACACCGACTAGTA+AGG | + | chr4.2:21628183-21628202 | None:intergenic | 50.0% |
| ! | GAGTAAGTTGGCGTACGTCA+GGG | + | chr4.2:21631706-21631725 | None:intergenic | 50.0% |
| ! | GATGTTTTTCCCCTTGCAGC+TGG | + | chr4.2:21628645-21628664 | None:intergenic | 50.0% |
| !! | CACCTTACTAGTCGGTGTTG+TGG | - | chr4.2:21628178-21628197 | MS.gene39406:intron | 50.0% |
| !! | CTTACTAGTCGGTGTTGTGG+AGG | - | chr4.2:21628181-21628200 | MS.gene39406:intron | 50.0% |
| AACACACACTCCTCACACCC+AGG | + | chr4.2:21628309-21628328 | None:intergenic | 55.0% | |
| ACACTCCTCACACCCAGGAT+TGG | + | chr4.2:21628304-21628323 | None:intergenic | 55.0% | |
| ACGGTTGAGAGTTCCCTCAG+TGG | - | chr4.2:21629840-21629859 | MS.gene39406:intron | 55.0% | |
| GACTAGTGGCGTGCCTATTG+TGG | - | chr4.2:21630925-21630944 | MS.gene39406:intron | 55.0% | |
| GCCGCTTGGATTAAGGGTGA+AGG | - | chr4.2:21630966-21630985 | MS.gene39406:intron | 55.0% | |
| GCGAATAAGTGGGGAGTTCG+GGG | - | chr4.2:21631063-21631082 | MS.gene39406:intron | 55.0% | |
| GGCGAATAAGTGGGGAGTTC+GGG | - | chr4.2:21631062-21631081 | MS.gene39406:intron | 55.0% | |
| GTACTTCCGCGGAAGTGGTA+AGG | - | chr4.2:21632323-21632342 | MS.gene39406:intron | 55.0% | |
| TTGGCAGGTGGAACACTTCC+AGG | + | chr4.2:21629495-21629514 | None:intergenic | 55.0% | |
| !! | TGGACTAGTAGCCTGCGTAG+TGG | - | chr4.2:21631020-21631039 | MS.gene39406:intron | 55.0% |
| CAGCAGCCTTACCACTTCCG+CGG | + | chr4.2:21632332-21632351 | None:intergenic | 60.0% | |
| ! | TCAGCAGGCTCTGGCTCAAG+AGG | + | chr4.2:21629534-21629553 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 21627522 | 21632398 | 21627522 | ID=MS.gene39406 |
| chr4.2 | mRNA | 21627522 | 21632398 | 21627522 | ID=MS.gene39406.t1;Parent=MS.gene39406 |
| chr4.2 | exon | 21632342 | 21632398 | 21632342 | ID=MS.gene39406.t1.exon1;Parent=MS.gene39406.t1 |
| chr4.2 | CDS | 21632342 | 21632398 | 21632342 | ID=cds.MS.gene39406.t1;Parent=MS.gene39406.t1 |
| chr4.2 | exon | 21631216 | 21631281 | 21631216 | ID=MS.gene39406.t1.exon2;Parent=MS.gene39406.t1 |
| chr4.2 | CDS | 21631216 | 21631281 | 21631216 | ID=cds.MS.gene39406.t1;Parent=MS.gene39406.t1 |
| chr4.2 | exon | 21630312 | 21630431 | 21630312 | ID=MS.gene39406.t1.exon3;Parent=MS.gene39406.t1 |
| chr4.2 | CDS | 21630312 | 21630431 | 21630312 | ID=cds.MS.gene39406.t1;Parent=MS.gene39406.t1 |
| chr4.2 | exon | 21630117 | 21630179 | 21630117 | ID=MS.gene39406.t1.exon4;Parent=MS.gene39406.t1 |
| chr4.2 | CDS | 21630117 | 21630179 | 21630117 | ID=cds.MS.gene39406.t1;Parent=MS.gene39406.t1 |
| chr4.2 | exon | 21629562 | 21629595 | 21629562 | ID=MS.gene39406.t1.exon5;Parent=MS.gene39406.t1 |
| chr4.2 | CDS | 21629562 | 21629595 | 21629562 | ID=cds.MS.gene39406.t1;Parent=MS.gene39406.t1 |
| chr4.2 | exon | 21629103 | 21629225 | 21629103 | ID=MS.gene39406.t1.exon6;Parent=MS.gene39406.t1 |
| chr4.2 | CDS | 21629103 | 21629225 | 21629103 | ID=cds.MS.gene39406.t1;Parent=MS.gene39406.t1 |
| chr4.2 | exon | 21628933 | 21628995 | 21628933 | ID=MS.gene39406.t1.exon7;Parent=MS.gene39406.t1 |
| chr4.2 | CDS | 21628933 | 21628995 | 21628933 | ID=cds.MS.gene39406.t1;Parent=MS.gene39406.t1 |
| chr4.2 | exon | 21628583 | 21628676 | 21628583 | ID=MS.gene39406.t1.exon8;Parent=MS.gene39406.t1 |
| chr4.2 | CDS | 21628583 | 21628676 | 21628583 | ID=cds.MS.gene39406.t1;Parent=MS.gene39406.t1 |
| chr4.2 | exon | 21628399 | 21628444 | 21628399 | ID=MS.gene39406.t1.exon9;Parent=MS.gene39406.t1 |
| chr4.2 | CDS | 21628399 | 21628444 | 21628399 | ID=cds.MS.gene39406.t1;Parent=MS.gene39406.t1 |
| chr4.2 | exon | 21628211 | 21628278 | 21628211 | ID=MS.gene39406.t1.exon10;Parent=MS.gene39406.t1 |
| chr4.2 | CDS | 21628211 | 21628278 | 21628211 | ID=cds.MS.gene39406.t1;Parent=MS.gene39406.t1 |
| chr4.2 | exon | 21627957 | 21628005 | 21627957 | ID=MS.gene39406.t1.exon11;Parent=MS.gene39406.t1 |
| chr4.2 | CDS | 21627957 | 21628005 | 21627957 | ID=cds.MS.gene39406.t1;Parent=MS.gene39406.t1 |
| chr4.2 | exon | 21627726 | 21627791 | 21627726 | ID=MS.gene39406.t1.exon12;Parent=MS.gene39406.t1 |
| chr4.2 | CDS | 21627726 | 21627791 | 21627726 | ID=cds.MS.gene39406.t1;Parent=MS.gene39406.t1 |
| chr4.2 | exon | 21627522 | 21627638 | 21627522 | ID=MS.gene39406.t1.exon13;Parent=MS.gene39406.t1 |
| chr4.2 | CDS | 21627522 | 21627638 | 21627522 | ID=cds.MS.gene39406.t1;Parent=MS.gene39406.t1 |
| Gene Sequence |
| Protein sequence |
