Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54709.t1 | XP_013450890.1 | 99 | 103 | 1 | 0 | 1 | 103 | 42 | 144 | 2.20E-55 | 224.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54709.t1 | O49856 | 94.2 | 103 | 6 | 0 | 1 | 103 | 42 | 144 | 8.4e-56 | 217.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54709.t1 | A0A072U5B9 | 99.0 | 103 | 1 | 0 | 1 | 103 | 42 | 144 | 1.6e-55 | 224.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene54709 | 0.872103 | 4.11E-67 | -1.69E-46 |
| MS.gene049181 | MS.gene54709 | -0.803365 | 3.61E-49 | -1.69E-46 |
| MS.gene049217 | MS.gene54709 | 0.816805 | 4.58E-52 | -1.69E-46 |
| MS.gene049222 | MS.gene54709 | 0.853853 | 1.82E-61 | -1.69E-46 |
| MS.gene049232 | MS.gene54709 | 0.809051 | 2.29E-50 | -1.69E-46 |
| MS.gene049281 | MS.gene54709 | -0.813805 | 2.13E-51 | -1.69E-46 |
| MS.gene049285 | MS.gene54709 | 0.865796 | 4.55E-65 | -1.69E-46 |
| MS.gene049320 | MS.gene54709 | 0.89259 | 1.38E-74 | -1.69E-46 |
| MS.gene04939 | MS.gene54709 | 0.837738 | 4.35E-57 | -1.69E-46 |
| MS.gene049402 | MS.gene54709 | -0.81317 | 2.93E-51 | -1.69E-46 |
| MS.gene049609 | MS.gene54709 | 0.80721 | 5.65E-50 | -1.69E-46 |
| MS.gene049633 | MS.gene54709 | 0.848059 | 7.80E-60 | -1.69E-46 |
| MS.gene05010 | MS.gene54709 | 0.831355 | 1.75E-55 | -1.69E-46 |
| MS.gene050163 | MS.gene54709 | 0.880596 | 4.82E-70 | -1.69E-46 |
| MS.gene050165 | MS.gene54709 | 0.887229 | 1.71E-72 | -1.69E-46 |
| MS.gene050170 | MS.gene54709 | 0.846443 | 2.16E-59 | -1.69E-46 |
| MS.gene050323 | MS.gene54709 | 0.844486 | 7.34E-59 | -1.69E-46 |
| MS.gene050333 | MS.gene54709 | 0.832233 | 1.06E-55 | -1.69E-46 |
| MS.gene050338 | MS.gene54709 | -0.801217 | 9.99E-49 | -1.69E-46 |
| MS.gene050496 | MS.gene54709 | 0.84578 | 3.28E-59 | -1.69E-46 |
| MS.gene050504 | MS.gene54709 | 0.898693 | 4.13E-77 | -1.69E-46 |
| MS.gene050518 | MS.gene54709 | 0.881634 | 2.04E-70 | -1.69E-46 |
| MS.gene050577 | MS.gene54709 | 0.889639 | 2.02E-73 | -1.69E-46 |
| MS.gene050612 | MS.gene54709 | 0.903189 | 4.48E-79 | -1.69E-46 |
| MS.gene050675 | MS.gene54709 | 0.856569 | 2.95E-62 | -1.69E-46 |
| MS.gene050699 | MS.gene54709 | 0.899012 | 3.02E-77 | -1.69E-46 |
| MS.gene050772 | MS.gene54709 | 0.822074 | 2.88E-53 | -1.69E-46 |
| MS.gene05080 | MS.gene54709 | 0.813341 | 2.69E-51 | -1.69E-46 |
| MS.gene050832 | MS.gene54709 | -0.84216 | 3.06E-58 | -1.69E-46 |
| MS.gene050833 | MS.gene54709 | -0.823211 | 1.57E-53 | -1.69E-46 |
| MS.gene050868 | MS.gene54709 | 0.828333 | 9.53E-55 | -1.69E-46 |
| MS.gene050871 | MS.gene54709 | 0.82418 | 9.28E-54 | -1.69E-46 |
| MS.gene050876 | MS.gene54709 | 0.840162 | 1.03E-57 | -1.69E-46 |
| MS.gene050883 | MS.gene54709 | -0.812591 | 3.92E-51 | -1.69E-46 |
| MS.gene050904 | MS.gene54709 | 0.81858 | 1.82E-52 | -1.69E-46 |
| MS.gene050986 | MS.gene54709 | 0.886022 | 4.91E-72 | -1.69E-46 |
| MS.gene05100 | MS.gene54709 | 0.830684 | 2.56E-55 | -1.69E-46 |
| MS.gene051044 | MS.gene54709 | -0.810311 | 1.23E-50 | -1.69E-46 |
| MS.gene051138 | MS.gene54709 | -0.802281 | 6.04E-49 | -1.69E-46 |
| MS.gene051317 | MS.gene54709 | 0.88349 | 4.29E-71 | -1.69E-46 |
| MS.gene051364 | MS.gene54709 | -0.828667 | 7.91E-55 | -1.69E-46 |
| MS.gene051366 | MS.gene54709 | -0.821213 | 4.55E-53 | -1.69E-46 |
| MS.gene051367 | MS.gene54709 | -0.803624 | 3.19E-49 | -1.69E-46 |
| MS.gene051517 | MS.gene54709 | -0.806642 | 7.45E-50 | -1.69E-46 |
| MS.gene051551 | MS.gene54709 | 0.841676 | 4.11E-58 | -1.69E-46 |
| MS.gene051651 | MS.gene54709 | -0.807505 | 4.89E-50 | -1.69E-46 |
| MS.gene051810 | MS.gene54709 | 0.848695 | 5.20E-60 | -1.69E-46 |
| MS.gene051949 | MS.gene54709 | 0.803749 | 3.00E-49 | -1.69E-46 |
| MS.gene052164 | MS.gene54709 | 0.829307 | 5.54E-55 | -1.69E-46 |
| MS.gene052482 | MS.gene54709 | 0.824329 | 8.56E-54 | -1.69E-46 |
| MS.gene052486 | MS.gene54709 | 0.828814 | 7.29E-55 | -1.69E-46 |
| MS.gene052503 | MS.gene54709 | 0.830832 | 2.35E-55 | -1.69E-46 |
| MS.gene052506 | MS.gene54709 | 0.804237 | 2.38E-49 | -1.69E-46 |
| MS.gene052615 | MS.gene54709 | 0.825856 | 3.73E-54 | -1.69E-46 |
| MS.gene052822 | MS.gene54709 | 0.816313 | 5.90E-52 | -1.69E-46 |
| MS.gene052823 | MS.gene54709 | 0.83301 | 6.82E-56 | -1.69E-46 |
| MS.gene052825 | MS.gene54709 | 0.827749 | 1.32E-54 | -1.69E-46 |
| MS.gene053203 | MS.gene54709 | 0.838968 | 2.10E-57 | -1.69E-46 |
| MS.gene053213 | MS.gene54709 | 0.844851 | 5.85E-59 | -1.69E-46 |
| MS.gene053286 | MS.gene54709 | 0.844443 | 7.53E-59 | -1.69E-46 |
| MS.gene053480 | MS.gene54709 | 0.816021 | 6.86E-52 | -1.69E-46 |
| MS.gene053632 | MS.gene54709 | 0.826973 | 2.02E-54 | -1.69E-46 |
| MS.gene054056 | MS.gene54709 | -0.807916 | 4.00E-50 | -1.69E-46 |
| MS.gene054595 | MS.gene54709 | 0.803913 | 2.78E-49 | -1.69E-46 |
| MS.gene054600 | MS.gene54709 | 0.808215 | 3.46E-50 | -1.69E-46 |
| MS.gene054642 | MS.gene54709 | 0.855848 | 4.79E-62 | -1.69E-46 |
| MS.gene05470 | MS.gene54709 | 0.910565 | 1.63E-82 | -1.69E-46 |
| MS.gene054954 | MS.gene54709 | 0.889911 | 1.58E-73 | -1.69E-46 |
| MS.gene055154 | MS.gene54709 | -0.811092 | 8.32E-51 | -1.69E-46 |
| MS.gene055251 | MS.gene54709 | -0.848607 | 5.50E-60 | -1.69E-46 |
| MS.gene055362 | MS.gene54709 | 0.881858 | 1.69E-70 | -1.69E-46 |
| MS.gene055502 | MS.gene54709 | 0.880394 | 5.69E-70 | -1.69E-46 |
| MS.gene055577 | MS.gene54709 | 0.849761 | 2.63E-60 | -1.69E-46 |
| MS.gene055748 | MS.gene54709 | 0.866127 | 3.58E-65 | -1.69E-46 |
| MS.gene055750 | MS.gene54709 | 0.845903 | 3.04E-59 | -1.69E-46 |
| MS.gene055751 | MS.gene54709 | 0.872965 | 2.12E-67 | -1.69E-46 |
| MS.gene055776 | MS.gene54709 | 0.874822 | 5.00E-68 | -1.69E-46 |
| MS.gene055849 | MS.gene54709 | 0.812774 | 3.58E-51 | -1.69E-46 |
| MS.gene05589 | MS.gene54709 | 0.87313 | 1.87E-67 | -1.69E-46 |
| MS.gene055942 | MS.gene54709 | -0.82049 | 6.67E-53 | -1.69E-46 |
| MS.gene055956 | MS.gene54709 | -0.802444 | 5.59E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene54709 | 0.88409 | 2.58E-71 | -1.69E-46 |
| MS.gene056510 | MS.gene54709 | 0.852584 | 4.19E-61 | -1.69E-46 |
| MS.gene056550 | MS.gene54709 | -0.817802 | 2.73E-52 | -1.69E-46 |
| MS.gene056657 | MS.gene54709 | 0.874516 | 6.35E-68 | -1.69E-46 |
| MS.gene056692 | MS.gene54709 | 0.859305 | 4.54E-63 | -1.69E-46 |
| MS.gene056761 | MS.gene54709 | -0.826763 | 2.27E-54 | -1.69E-46 |
| MS.gene056856 | MS.gene54709 | -0.808019 | 3.80E-50 | -1.69E-46 |
| MS.gene057606 | MS.gene54709 | -0.813943 | 1.98E-51 | -1.69E-46 |
| MS.gene057658 | MS.gene54709 | 0.8101 | 1.36E-50 | -1.69E-46 |
| MS.gene057831 | MS.gene54709 | 0.834727 | 2.54E-56 | -1.69E-46 |
| MS.gene057986 | MS.gene54709 | 0.801103 | 1.05E-48 | -1.69E-46 |
| MS.gene058111 | MS.gene54709 | -0.816151 | 6.41E-52 | -1.69E-46 |
| MS.gene058334 | MS.gene54709 | -0.881487 | 2.30E-70 | -1.69E-46 |
| MS.gene058419 | MS.gene54709 | 0.889241 | 2.89E-73 | -1.69E-46 |
| MS.gene058452 | MS.gene54709 | -0.80958 | 1.76E-50 | -1.69E-46 |
| MS.gene058544 | MS.gene54709 | 0.864577 | 1.10E-64 | -1.69E-46 |
| MS.gene058723 | MS.gene54709 | 0.821799 | 3.33E-53 | -1.69E-46 |
| MS.gene058773 | MS.gene54709 | 0.824106 | 9.66E-54 | -1.69E-46 |
| MS.gene058838 | MS.gene54709 | 0.84037 | 9.06E-58 | -1.69E-46 |
| MS.gene059022 | MS.gene54709 | 0.888444 | 5.87E-73 | -1.69E-46 |
| MS.gene059023 | MS.gene54709 | 0.844833 | 5.92E-59 | -1.69E-46 |
| MS.gene059079 | MS.gene54709 | 0.812474 | 4.16E-51 | -1.69E-46 |
| MS.gene05912 | MS.gene54709 | 0.817978 | 2.49E-52 | -1.69E-46 |
| MS.gene05914 | MS.gene54709 | 0.832962 | 7.01E-56 | -1.69E-46 |
| MS.gene059677 | MS.gene54709 | 0.90972 | 4.17E-82 | -1.69E-46 |
| MS.gene059718 | MS.gene54709 | 0.852423 | 4.66E-61 | -1.69E-46 |
| MS.gene059756 | MS.gene54709 | 0.855426 | 6.36E-62 | -1.69E-46 |
| MS.gene059770 | MS.gene54709 | -0.817067 | 4.00E-52 | -1.69E-46 |
| MS.gene059837 | MS.gene54709 | 0.814099 | 1.83E-51 | -1.69E-46 |
| MS.gene059865 | MS.gene54709 | 0.89181 | 2.83E-74 | -1.69E-46 |
| MS.gene06000 | MS.gene54709 | 0.801657 | 8.12E-49 | -1.69E-46 |
| MS.gene060337 | MS.gene54709 | -0.819156 | 1.35E-52 | -1.69E-46 |
| MS.gene060595 | MS.gene54709 | -0.800166 | 1.64E-48 | -1.69E-46 |
| MS.gene060703 | MS.gene54709 | 0.86405 | 1.61E-64 | -1.69E-46 |
| MS.gene060762 | MS.gene54709 | 0.879192 | 1.52E-69 | -1.69E-46 |
| MS.gene060778 | MS.gene54709 | 0.826878 | 2.13E-54 | -1.69E-46 |
| MS.gene06077 | MS.gene54709 | 0.880833 | 3.96E-70 | -1.69E-46 |
| MS.gene060823 | MS.gene54709 | -0.822188 | 2.71E-53 | -1.69E-46 |
| MS.gene060929 | MS.gene54709 | -0.824721 | 6.92E-54 | -1.69E-46 |
| MS.gene060982 | MS.gene54709 | 0.883067 | 6.14E-71 | -1.69E-46 |
| MS.gene061003 | MS.gene54709 | -0.8002 | 1.61E-48 | -1.69E-46 |
| MS.gene061044 | MS.gene54709 | -0.838803 | 2.31E-57 | -1.69E-46 |
| MS.gene061150 | MS.gene54709 | 0.83598 | 1.22E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54709.t1 | MTR_6g008220 | 99.029 | 103 | 1 | 0 | 1 | 103 | 42 | 144 | 2.36e-76 | 221 |
| MS.gene54709.t1 | MTR_6g008220 | 99.029 | 103 | 1 | 0 | 1 | 103 | 1 | 103 | 2.39e-75 | 218 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54709.t1 | AT2G04700 | 88.350 | 103 | 12 | 0 | 1 | 103 | 44 | 146 | 6.14e-69 | 203 |
| MS.gene54709.t1 | AT2G04700 | 88.350 | 103 | 12 | 0 | 1 | 103 | 44 | 146 | 6.14e-69 | 203 |
| MS.gene54709.t1 | AT2G04700 | 63.529 | 85 | 29 | 1 | 21 | 103 | 6 | 90 | 9.69e-34 | 112 |
Find 25 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGAGGCTGCGCAAGGATTT+TGG | 0.144523 | 6.1:-4009881 | MS.gene54709:CDS |
| GTGCACCCAACGAATCTTTA+TGG | 0.263572 | 6.1:+4010270 | None:intergenic |
| AAAAGAATGTTCCTGATTTA+CGG | 0.288914 | 6.1:+4012087 | None:intergenic |
| GTGCACCACTCTGCCCTTGC+CGG | 0.356354 | 6.1:-4010253 | MS.gene54709:intron |
| TCACCGGCAAAATCGTTATC+AGG | 0.385886 | 6.1:+4009217 | None:intergenic |
| GAGCAATATGCCCGTAAATC+AGG | 0.400997 | 6.1:-4012098 | MS.gene54709:CDS |
| AAAGAATGTTCCTGATTTAC+GGG | 0.415753 | 6.1:+4012088 | None:intergenic |
| AACAGCAGTTACTCCTTTGT+CGG | 0.421470 | 6.1:+4012061 | None:intergenic |
| TGCCTTGCAGACTATCACCT+TGG | 0.428260 | 6.1:-4009072 | MS.gene54709:intron |
| GGCTGACCATAAAGATTCGT+TGG | 0.483156 | 6.1:-4010276 | MS.gene54709:CDS |
| CCAAAATCCTTGCGCAGCCT+CGG | 0.494274 | 6.1:+4009881 | None:intergenic |
| ATGTCCCTACCTTTCTCTCA+TGG | 0.499306 | 6.1:+4009842 | None:intergenic |
| AGTAACTGCTGTTGTTATCA+AGG | 0.507865 | 6.1:-4012051 | MS.gene54709:intron |
| GCTGACCATAAAGATTCGTT+GGG | 0.513031 | 6.1:-4010275 | MS.gene54709:CDS |
| TGATTCTTTAATTTCATCCA+AGG | 0.519163 | 6.1:+4009055 | None:intergenic |
| CGTGTGTTCCCATGAGAGAA+AGG | 0.525830 | 6.1:-4009851 | MS.gene54709:intron |
| CAGAATTACCTGTTCATCAC+CGG | 0.530705 | 6.1:+4009201 | None:intergenic |
| CTTTCTCTCATGGGAACACA+CGG | 0.542343 | 6.1:+4009852 | None:intergenic |
| CAAGAAGTATTTACCGGCAA+GGG | 0.563318 | 6.1:+4010240 | None:intergenic |
| AAAGCTGCCGAGGCTGCGCA+AGG | 0.577948 | 6.1:-4009888 | MS.gene54709:CDS |
| TGTCCCTACCTTTCTCTCAT+GGG | 0.589235 | 6.1:+4009843 | None:intergenic |
| ACAAGAAGTATTTACCGGCA+AGG | 0.590984 | 6.1:+4010239 | None:intergenic |
| TTATGACGATAAAGCTGCCG+AGG | 0.633222 | 6.1:-4009898 | MS.gene54709:CDS |
| TTTCTCTCATGGGAACACAC+GGG | 0.712722 | 6.1:+4009853 | None:intergenic |
| ATTTACCGGCAAGGGCAGAG+TGG | 0.719195 | 6.1:+4010248 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTGTGT+GGG | - | chr6.1:4009364-4009383 | MS.gene54709:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTTTTGTG+TGG | - | chr6.1:4009363-4009382 | MS.gene54709:intron | 10.0% |
| !! | AGTTAAGAAAACAATATTAT+GGG | + | chr6.1:4011864-4011883 | None:intergenic | 15.0% |
| !! | ATGAAACTACAATTTATATT+TGG | + | chr6.1:4009172-4009191 | None:intergenic | 15.0% |
| !!! | AACGTTTCTTTTTTATATAA+AGG | - | chr6.1:4010226-4010245 | MS.gene54709:intron | 15.0% |
| !!! | AGGTATTGATTTTATTAAAA+TGG | - | chr6.1:4011557-4011576 | MS.gene54709:intron | 15.0% |
| !!! | TAAACAAATTTGTATTTTCT+GGG | - | chr6.1:4011501-4011520 | MS.gene54709:intron | 15.0% |
| !!! | TTAAACAAATTTGTATTTTC+TGG | - | chr6.1:4011500-4011519 | MS.gene54709:intron | 15.0% |
| !! | AAATTCTTGCATTTATACTT+CGG | + | chr6.1:4009917-4009936 | None:intergenic | 20.0% |
| !! | GAGTTAAGAAAACAATATTA+TGG | + | chr6.1:4011865-4011884 | None:intergenic | 20.0% |
| !! | GTTAAGAAAACAATATTATG+GGG | + | chr6.1:4011863-4011882 | None:intergenic | 20.0% |
| !! | TAAAATTTCATTAGATCACA+TGG | - | chr6.1:4010490-4010509 | MS.gene54709:intron | 20.0% |
| !! | TCTGAAAATGTATTTATTAG+TGG | - | chr6.1:4009817-4009836 | MS.gene54709:intron | 20.0% |
| !! | TTAAGAAAACAATATTATGG+GGG | + | chr6.1:4011862-4011881 | None:intergenic | 20.0% |
| !!! | ATTCTCTGTAATTTAAGTTA+AGG | - | chr6.1:4011825-4011844 | MS.gene54709:intron | 20.0% |
| !!! | CGTAATTTAAATTTTTGGAA+TGG | - | chr6.1:4010035-4010054 | MS.gene54709:intron | 20.0% |
| !!! | CTTTTTTATATAAAGGCTTT+TGG | - | chr6.1:4010233-4010252 | MS.gene54709:intron | 20.0% |
| !!! | GACACTTATATTTTGTTTAA+AGG | - | chr6.1:4011537-4011556 | MS.gene54709:intron | 20.0% |
| !!! | TAAATTTTTGGAATGGATAA+TGG | - | chr6.1:4010042-4010061 | MS.gene54709:intron | 20.0% |
| !!! | TATGATCTTCTGTTTTTTAA+TGG | - | chr6.1:4010407-4010426 | MS.gene54709:intron | 20.0% |
| !!! | TCGAACGTAATTTAAATTTT+TGG | - | chr6.1:4010030-4010049 | MS.gene54709:intron | 20.0% |
| !!! | TGTAATACATATTTGTTATC+AGG | - | chr6.1:4011685-4011704 | MS.gene54709:intron | 20.0% |
| !!! | TTAAAATGGAGTTTGTTTAA+AGG | - | chr6.1:4011571-4011590 | MS.gene54709:intron | 20.0% |
| !!! | TTTCGTTTCATTTTCATAAA+CGG | - | chr6.1:4009306-4009325 | MS.gene54709:intron | 20.0% |
| ! | AAAAGAATGTTCCTGATTTA+CGG | + | chr6.1:4009069-4009088 | None:intergenic | 25.0% |
| ! | ATCATAACAAAATTCACACA+GGG | + | chr6.1:4010393-4010412 | None:intergenic | 25.0% |
| ! | ATTCAAAAATCATCTTCTCA+TGG | - | chr6.1:4010276-4010295 | MS.gene54709:CDS | 25.0% |
| ! | CATACAACTGATATTTACTT+TGG | - | chr6.1:4010807-4010826 | MS.gene54709:intron | 25.0% |
| ! | CATTCTAATCAAAATCTGTT+TGG | + | chr6.1:4012024-4012043 | None:intergenic | 25.0% |
| ! | GAAAATGTATTTATTAGTGG+TGG | - | chr6.1:4009820-4009839 | MS.gene54709:intron | 25.0% |
| ! | TATTTAATAACACTGCAACA+AGG | + | chr6.1:4010944-4010963 | None:intergenic | 25.0% |
| ! | TGTATTACAAAATACGATCA+CGG | + | chr6.1:4011674-4011693 | None:intergenic | 25.0% |
| !! | AAAAAACAAGTTGAGAAAGA+AGG | + | chr6.1:4009597-4009616 | None:intergenic | 25.0% |
| !! | ATTGTTTTCTTAACTCATTG+TGG | - | chr6.1:4011869-4011888 | MS.gene54709:intron | 25.0% |
| !! | GAAAATTTTCCTATACATCT+TGG | - | chr6.1:4010628-4010647 | MS.gene54709:intron | 25.0% |
| !! | GTTTGATATAGTTGATTCAT+AGG | + | chr6.1:4011638-4011657 | None:intergenic | 25.0% |
| !! | TGATTCTTTAATTTCATCCA+AGG | + | chr6.1:4012101-4012120 | None:intergenic | 25.0% |
| !! | TTTCGGCACTTTAAAAATTT+GGG | + | chr6.1:4009893-4009912 | None:intergenic | 25.0% |
| !!! | GTAAAACAAGAAGTATTTAC+CGG | + | chr6.1:4010922-4010941 | None:intergenic | 25.0% |
| !!! | TACTGATATTGTTTCTACTT+TGG | - | chr6.1:4010844-4010863 | MS.gene54709:intron | 25.0% |
| !!! | TGAATTTTGTTTTGATCTTC+TGG | - | chr6.1:4010357-4010376 | MS.gene54709:intron | 25.0% |
| !!! | TGTGATATATGTTTCTAGTT+GGG | - | chr6.1:4009654-4009673 | MS.gene54709:intron | 25.0% |
| !!! | TTGTTTTTTGAGTTCTGTAT+TGG | - | chr6.1:4009608-4009627 | MS.gene54709:intron | 25.0% |
| AAAATTATGCTACGCTATAG+TGG | + | chr6.1:4010987-4011006 | None:intergenic | 30.0% | |
| AAAGAATGTTCCTGATTTAC+GGG | + | chr6.1:4009068-4009087 | None:intergenic | 30.0% | |
| AAAGCACATATGGAAATGAA+TGG | - | chr6.1:4010658-4010677 | MS.gene54709:intron | 30.0% | |
| AATGTTGTTGAATCAAGTCT+TGG | - | chr6.1:4009213-4009232 | MS.gene54709:CDS | 30.0% | |
| ACAAAATTGTCTTTGCAACA+AGG | + | chr6.1:4011128-4011147 | None:intergenic | 30.0% | |
| ACATTTGCATCAACAACTAA+AGG | + | chr6.1:4009198-4009217 | None:intergenic | 30.0% | |
| AGTACAAAATGTGATGCAAT+AGG | - | chr6.1:4011040-4011059 | MS.gene54709:intron | 30.0% | |
| ATATCAGTTGTATGCATACA+CGG | + | chr6.1:4010801-4010820 | None:intergenic | 30.0% | |
| GAAGGAAAATAAGTAATAGC+CGG | + | chr6.1:4011345-4011364 | None:intergenic | 30.0% | |
| GAATTCAAAGTTGAGAAAGA+AGG | + | chr6.1:4009554-4009573 | None:intergenic | 30.0% | |
| GATCAAAACAAAATTCACAC+AGG | + | chr6.1:4010354-4010373 | None:intergenic | 30.0% | |
| GATCATAACAAAATTCACAC+AGG | + | chr6.1:4010394-4010413 | None:intergenic | 30.0% | |
| GTGTCTTTATTCTATAGTTC+TGG | - | chr6.1:4011146-4011165 | MS.gene54709:intron | 30.0% | |
| TAGAACGCTATACTAATTTG+TGG | - | chr6.1:4010116-4010135 | MS.gene54709:intron | 30.0% | |
| TTCAGACCATATCTGATTAA+AGG | + | chr6.1:4009803-4009822 | None:intergenic | 30.0% | |
| TTTCTACTACCAAGATGTAT+AGG | + | chr6.1:4010640-4010659 | None:intergenic | 30.0% | |
| ! | ACCTAGAAGTTTTACGTTAT+GGG | - | chr6.1:4009704-4009723 | MS.gene54709:intron | 30.0% |
| ! | ATCCAAAATCTCTGTGTTTT+AGG | - | chr6.1:4011230-4011249 | MS.gene54709:intron | 30.0% |
| ! | CTTTCGGCACTTTAAAAATT+TGG | + | chr6.1:4009894-4009913 | None:intergenic | 30.0% |
| ! | GCACTTTAAAAATTTGGGTT+GGG | + | chr6.1:4009888-4009907 | None:intergenic | 30.0% |
| ! | GCATTGAACTTGATAACTTA+AGG | + | chr6.1:4011373-4011392 | None:intergenic | 30.0% |
| ! | TCATTACCAAAACTTGCTTA+TGG | + | chr6.1:4009856-4009875 | None:intergenic | 30.0% |
| !! | ATTGTTTCTACTTTGGAACA+GGG | - | chr6.1:4010851-4010870 | MS.gene54709:intron | 30.0% |
| !! | CTGTATTGGTTTCAAATGTT+AGG | - | chr6.1:4009622-4009641 | MS.gene54709:intron | 30.0% |
| !! | CTGTGATATATGTTTCTAGT+TGG | - | chr6.1:4009653-4009672 | MS.gene54709:intron | 30.0% |
| !! | TATTGTTTCTACTTTGGAAC+AGG | - | chr6.1:4010850-4010869 | MS.gene54709:intron | 30.0% |
| !! | TCAAAATCTGTTTGGTTTGT+TGG | + | chr6.1:4012016-4012035 | None:intergenic | 30.0% |
| !! | TTCTTAGTTTGTATAAACGC+AGG | - | chr6.1:4011726-4011745 | MS.gene54709:intron | 30.0% |
| !!! | ATGTTTCTAGTTGGGTTTTT+AGG | - | chr6.1:4009662-4009681 | MS.gene54709:intron | 30.0% |
| !!! | TGTGGTTTTGTTTGATAGAA+AGG | - | chr6.1:4011887-4011906 | MS.gene54709:intron | 30.0% |
| AACTACCAAGTTTGATATGC+TGG | - | chr6.1:4010692-4010711 | MS.gene54709:intron | 35.0% | |
| AGACCATATCTGATTAAAGG+TGG | + | chr6.1:4009800-4009819 | None:intergenic | 35.0% | |
| AGTAACTGCTGTTGTTATCA+AGG | - | chr6.1:4009102-4009121 | MS.gene54709:intron | 35.0% | |
| ATGTTCTTTGTCAAGAAACG+TGG | - | chr6.1:4011767-4011786 | MS.gene54709:intron | 35.0% | |
| CATGGGAGATTCATTATTGT+TGG | - | chr6.1:4009278-4009297 | MS.gene54709:intron | 35.0% | |
| GACCATATCTGATTAAAGGT+GGG | + | chr6.1:4009799-4009818 | None:intergenic | 35.0% | |
| GACCATTGTCAATGTATTAC+AGG | + | chr6.1:4010012-4010031 | None:intergenic | 35.0% | |
| GGAATATAAACTATCGAGCT+TGG | - | chr6.1:4010532-4010551 | MS.gene54709:intron | 35.0% | |
| GTCCTGTAATACATTGACAA+TGG | - | chr6.1:4010007-4010026 | MS.gene54709:intron | 35.0% | |
| TCATTCCAGCATATCAAACT+TGG | + | chr6.1:4010700-4010719 | None:intergenic | 35.0% | |
| TGATAACTTAAGGTCTGAGA+AGG | + | chr6.1:4011363-4011382 | None:intergenic | 35.0% | |
| TGCATTTATACTTCGGCTTT+CGG | + | chr6.1:4009910-4009929 | None:intergenic | 35.0% | |
| TGTTATCAGGTTTACTACGT+TGG | - | chr6.1:4011698-4011717 | MS.gene54709:intron | 35.0% | |
| TTATACTACTAGCTGCTACT+TGG | - | chr6.1:4009481-4009500 | MS.gene54709:intron | 35.0% | |
| TTGTACTAAATAGCGTATCG+CGG | + | chr6.1:4011027-4011046 | None:intergenic | 35.0% | |
| TTTCTCAATTACGCAGATTC+TGG | + | chr6.1:4010600-4010619 | None:intergenic | 35.0% | |
| ! | AAGTTCGAAAGTGAGTTTTC+CGG | - | chr6.1:4010729-4010748 | MS.gene54709:intron | 35.0% |
| ! | ATTTTGTTGAACGTGAGTCA+TGG | - | chr6.1:4009260-4009279 | MS.gene54709:intron | 35.0% |
| ! | CAAGGCAGTGTTATCAATTT+TGG | + | chr6.1:4011110-4011129 | None:intergenic | 35.0% |
| ! | CCTAGAAGTTTTACGTTATG+GGG | - | chr6.1:4009705-4009724 | MS.gene54709:intron | 35.0% |
| ! | CTAGAAGTTTTACGTTATGG+GGG | - | chr6.1:4009706-4009725 | MS.gene54709:intron | 35.0% |
| ! | GACCTAGAAGTTTTACGTTA+TGG | - | chr6.1:4009703-4009722 | MS.gene54709:intron | 35.0% |
| ! | GAGATTTTGGATGTAAGCTT+AGG | + | chr6.1:4011222-4011241 | None:intergenic | 35.0% |
| ! | GGCACTTTAAAAATTTGGGT+TGG | + | chr6.1:4009889-4009908 | None:intergenic | 35.0% |
| ! | GGTTTGAAATGCTGAATGTT+GGG | - | chr6.1:4010511-4010530 | MS.gene54709:intron | 35.0% |
| ! | GTAATACCCAAAGTACTCTT+AGG | - | chr6.1:4010185-4010204 | MS.gene54709:intron | 35.0% |
| ! | TGCCTAAAACACAGAGATTT+TGG | + | chr6.1:4011235-4011254 | None:intergenic | 35.0% |
| ! | TGGTAGTAGAAAAGCACATA+TGG | - | chr6.1:4010648-4010667 | MS.gene54709:intron | 35.0% |
| ! | TGGTTTGAAATGCTGAATGT+TGG | - | chr6.1:4010510-4010529 | MS.gene54709:intron | 35.0% |
| ! | TTTTGTTGAACGTGAGTCAT+GGG | - | chr6.1:4009261-4009280 | MS.gene54709:intron | 35.0% |
| !! | AACCTTCCTAAGAGTACTTT+GGG | + | chr6.1:4010194-4010213 | None:intergenic | 35.0% |
| !!! | AGTTTTGGTAATGACTGAGT+TGG | - | chr6.1:4009862-4009881 | MS.gene54709:CDS | 35.0% |
| AACAGCAGTTACTCCTTTGT+CGG | + | chr6.1:4009095-4009114 | None:intergenic | 40.0% | |
| ACATGATCAGTTGTGCAACT+AGG | + | chr6.1:4010454-4010473 | None:intergenic | 40.0% | |
| CAGAATTACCTGTTCATCAC+CGG | + | chr6.1:4011955-4011974 | None:intergenic | 40.0% | |
| CCCCATAACGTAAAACTTCT+AGG | + | chr6.1:4009708-4009727 | None:intergenic | 40.0% | |
| GCTGACCATAAAGATTCGTT+GGG | - | chr6.1:4010878-4010897 | MS.gene54709:intron | 40.0% | |
| GGAAAACTCACTTTCGAACT+TGG | + | chr6.1:4010730-4010749 | None:intergenic | 40.0% | |
| GTCCCACCTTTAATCAGATA+TGG | - | chr6.1:4009794-4009813 | MS.gene54709:intron | 40.0% | |
| GTTGAGAAAGAAGGACAATC+TGG | + | chr6.1:4009545-4009564 | None:intergenic | 40.0% | |
| ! | ACCAAAACTTGCTTATGGAG+AGG | + | chr6.1:4009851-4009870 | None:intergenic | 40.0% |
| ! | CAACTAGGAGCATGTAAAAG+TGG | + | chr6.1:4010439-4010458 | None:intergenic | 40.0% |
| ! | GAGTGAGAAAAAGCATGCAA+TGG | + | chr6.1:4011917-4011936 | None:intergenic | 40.0% |
| ! | TACCCAAAGTACTCTTAGGA+AGG | - | chr6.1:4010189-4010208 | MS.gene54709:intron | 40.0% |
| ! | TCCTCTCCATAAGCAAGTTT+TGG | - | chr6.1:4009847-4009866 | MS.gene54709:intron | 40.0% |
| !! | ACAAGAAGTATTTACCGGCA+AGG | + | chr6.1:4010917-4010936 | None:intergenic | 40.0% |
| !! | ACATTCTTTTGTGCCGACAA+AGG | - | chr6.1:4009079-4009098 | MS.gene54709:intron | 40.0% |
| !! | ACTCCTGATAACGATTTTGC+CGG | - | chr6.1:4011933-4011952 | MS.gene54709:intron | 40.0% |
| !! | CAACCTTCCTAAGAGTACTT+TGG | + | chr6.1:4010195-4010214 | None:intergenic | 40.0% |
| !! | CAAGAAGTATTTACCGGCAA+GGG | + | chr6.1:4010916-4010935 | None:intergenic | 40.0% |
| !! | TTCTACTTTGGAACAGGGTT+TGG | - | chr6.1:4010856-4010875 | MS.gene54709:intron | 40.0% |
| !!! | GGGATCTTTACCTGTTTTTG+TGG | - | chr6.1:4009384-4009403 | MS.gene54709:intron | 40.0% |
| ATCCAAGGTGATAGTCTGCA+AGG | + | chr6.1:4012086-4012105 | None:intergenic | 45.0% | |
| ATGTCCCTACCTTTCTCTCA+TGG | + | chr6.1:4011314-4011333 | None:intergenic | 45.0% | |
| CACTCACACACCACAAAAAC+AGG | + | chr6.1:4009397-4009416 | None:intergenic | 45.0% | |
| CGATCACGGCTATGAATTCT+CGG | + | chr6.1:4011660-4011679 | None:intergenic | 45.0% | |
| CTTTCTCTCATGGGAACACA+CGG | + | chr6.1:4011304-4011323 | None:intergenic | 45.0% | |
| GAGCAATATGCCCGTAAATC+AGG | - | chr6.1:4009055-4009074 | MS.gene54709:CDS | 45.0% | |
| GCCTATCAACAACGACAATC+CGG | + | chr6.1:4010751-4010770 | None:intergenic | 45.0% | |
| GGCTGACCATAAAGATTCGT+TGG | - | chr6.1:4010877-4010896 | MS.gene54709:intron | 45.0% | |
| GGTAGGGACATCTTTACAAC+CGG | - | chr6.1:4011323-4011342 | MS.gene54709:intron | 45.0% | |
| GTGCACCCAACGAATCTTTA+TGG | + | chr6.1:4010886-4010905 | None:intergenic | 45.0% | |
| GTTCCCATGAGAGAAAGGTA+GGG | - | chr6.1:4011307-4011326 | MS.gene54709:intron | 45.0% | |
| TCACCGGCAAAATCGTTATC+AGG | + | chr6.1:4011939-4011958 | None:intergenic | 45.0% | |
| TCCGGATTGTCGTTGTTGAT+AGG | - | chr6.1:4010747-4010766 | MS.gene54709:intron | 45.0% | |
| TGCACAACTGATCATGTGTC+TGG | - | chr6.1:4010457-4010476 | MS.gene54709:intron | 45.0% | |
| TGTCCCTACCTTTCTCTCAT+GGG | + | chr6.1:4011313-4011332 | None:intergenic | 45.0% | |
| TGTTCCCATGAGAGAAAGGT+AGG | - | chr6.1:4011306-4011325 | MS.gene54709:intron | 45.0% | |
| TTATGACGATAAAGCTGCCG+AGG | - | chr6.1:4011255-4011274 | MS.gene54709:intron | 45.0% | |
| TTTCTCTCATGGGAACACAC+GGG | + | chr6.1:4011303-4011322 | None:intergenic | 45.0% | |
| !! | ATTCTATAGTTCTGGCAGCG+TGG | - | chr6.1:4011154-4011173 | MS.gene54709:intron | 45.0% |
| AGCGTATCGCGGAACAAAAG+CGG | + | chr6.1:4011016-4011035 | None:intergenic | 50.0% | |
| ATCTACGTCCATCGCTGTGA+TGG | + | chr6.1:4009967-4009986 | None:intergenic | 50.0% | |
| CGTGTGTTCCCATGAGAGAA+AGG | - | chr6.1:4011302-4011321 | MS.gene54709:intron | 50.0% | |
| CTGATCATGTGTCTGGCATG+TGG | - | chr6.1:4010464-4010483 | MS.gene54709:intron | 50.0% | |
| TCTACGTCCATCGCTGTGAT+GGG | + | chr6.1:4009966-4009985 | None:intergenic | 50.0% | |
| TGCCTTGCAGACTATCACCT+TGG | - | chr6.1:4012081-4012100 | MS.gene54709:CDS | 50.0% | |
| ! | CGATTTTGCCGGTGATGAAC+AGG | - | chr6.1:4011944-4011963 | MS.gene54709:intron | 50.0% |
| ATTTACCGGCAAGGGCAGAG+TGG | + | chr6.1:4010908-4010927 | None:intergenic | 55.0% | |
| ATTTGCCCCCATCACAGCGA+TGG | - | chr6.1:4009956-4009975 | MS.gene54709:intron | 55.0% | |
| CCAAAATCCTTGCGCAGCCT+CGG | + | chr6.1:4011275-4011294 | None:intergenic | 55.0% | |
| CTACGTCCATCGCTGTGATG+GGG | + | chr6.1:4009965-4009984 | None:intergenic | 55.0% | |
| GGCAGCGTGGTTGCATACAT+AGG | - | chr6.1:4011167-4011186 | MS.gene54709:intron | 55.0% | |
| TACGTCCATCGCTGTGATGG+GGG | + | chr6.1:4009964-4009983 | None:intergenic | 55.0% | |
| ! | CCGAGGCTGCGCAAGGATTT+TGG | - | chr6.1:4011272-4011291 | MS.gene54709:intron | 60.0% |
| AAAGCTGCCGAGGCTGCGCA+AGG | - | chr6.1:4011265-4011284 | MS.gene54709:intron | 65.0% | |
| GTGCACCACTCTGCCCTTGC+CGG | - | chr6.1:4010900-4010919 | MS.gene54709:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 4009040 | 4012135 | 4009040 | ID=MS.gene54709 |
| chr6.1 | mRNA | 4009040 | 4012135 | 4009040 | ID=MS.gene54709.t1;Parent=MS.gene54709 |
| chr6.1 | exon | 4012052 | 4012135 | 4012052 | ID=MS.gene54709.t1.exon1;Parent=MS.gene54709.t1 |
| chr6.1 | CDS | 4012052 | 4012135 | 4012052 | ID=cds.MS.gene54709.t1;Parent=MS.gene54709.t1 |
| chr6.1 | exon | 4010254 | 4010303 | 4010254 | ID=MS.gene54709.t1.exon2;Parent=MS.gene54709.t1 |
| chr6.1 | CDS | 4010254 | 4010303 | 4010254 | ID=cds.MS.gene54709.t1;Parent=MS.gene54709.t1 |
| chr6.1 | exon | 4009852 | 4009923 | 4009852 | ID=MS.gene54709.t1.exon3;Parent=MS.gene54709.t1 |
| chr6.1 | CDS | 4009852 | 4009923 | 4009852 | ID=cds.MS.gene54709.t1;Parent=MS.gene54709.t1 |
| chr6.1 | exon | 4009210 | 4009270 | 4009210 | ID=MS.gene54709.t1.exon4;Parent=MS.gene54709.t1 |
| chr6.1 | CDS | 4009210 | 4009270 | 4009210 | ID=cds.MS.gene54709.t1;Parent=MS.gene54709.t1 |
| chr6.1 | exon | 4009040 | 4009084 | 4009040 | ID=MS.gene54709.t1.exon5;Parent=MS.gene54709.t1 |
| chr6.1 | CDS | 4009040 | 4009084 | 4009040 | ID=cds.MS.gene54709.t1;Parent=MS.gene54709.t1 |
| Gene Sequence |
| Protein sequence |
