Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47901.t1 | BAU98053.1 | 99.7 | 358 | 1 | 0 | 1 | 358 | 1 | 358 | 1.90E-199 | 704.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47901.t1 | P07730 | 23.2 | 388 | 212 | 8 | 35 | 338 | 80 | 465 | 1.7e-23 | 111.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47901.t1 | A0A161JQR4 | 99.7 | 358 | 1 | 0 | 1 | 358 | 1 | 358 | 1.4e-199 | 704.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050082 | MS.gene47901 | 0.843235 | 1.59E-58 | -1.69E-46 |
| MS.gene050170 | MS.gene47901 | -0.817153 | 3.82E-52 | -1.69E-46 |
| MS.gene050338 | MS.gene47901 | 0.85608 | 4.10E-62 | -1.69E-46 |
| MS.gene050496 | MS.gene47901 | -0.813395 | 2.62E-51 | -1.69E-46 |
| MS.gene050577 | MS.gene47901 | -0.802337 | 5.88E-49 | -1.69E-46 |
| MS.gene050904 | MS.gene47901 | -0.807575 | 4.73E-50 | -1.69E-46 |
| MS.gene051364 | MS.gene47901 | 0.828556 | 8.42E-55 | -1.69E-46 |
| MS.gene051366 | MS.gene47901 | 0.824693 | 7.03E-54 | -1.69E-46 |
| MS.gene051367 | MS.gene47901 | 0.833897 | 4.09E-56 | -1.69E-46 |
| MS.gene051422 | MS.gene47901 | 0.857609 | 1.45E-62 | -1.69E-46 |
| MS.gene051651 | MS.gene47901 | 0.816457 | 5.48E-52 | -1.69E-46 |
| MS.gene051718 | MS.gene47901 | 0.835875 | 1.30E-56 | -1.69E-46 |
| MS.gene052383 | MS.gene47901 | 0.801507 | 8.71E-49 | -1.69E-46 |
| MS.gene052707 | MS.gene47901 | 0.821344 | 4.25E-53 | -1.69E-46 |
| MS.gene052710 | MS.gene47901 | 0.823593 | 1.27E-53 | -1.69E-46 |
| MS.gene053083 | MS.gene47901 | 0.801179 | 1.02E-48 | -1.69E-46 |
| MS.gene055251 | MS.gene47901 | 0.861517 | 9.71E-64 | -1.69E-46 |
| MS.gene055730 | MS.gene47901 | 0.801791 | 7.62E-49 | -1.69E-46 |
| MS.gene055751 | MS.gene47901 | -0.806185 | 9.30E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene47901 | -0.82263 | 2.14E-53 | -1.69E-46 |
| MS.gene056266 | MS.gene47901 | -0.808279 | 3.35E-50 | -1.69E-46 |
| MS.gene056354 | MS.gene47901 | 0.823608 | 1.26E-53 | -1.69E-46 |
| MS.gene056504 | MS.gene47901 | -0.810885 | 9.23E-51 | -1.69E-46 |
| MS.gene056692 | MS.gene47901 | -0.809536 | 1.80E-50 | -1.69E-46 |
| MS.gene056694 | MS.gene47901 | 0.808773 | 2.63E-50 | -1.69E-46 |
| MS.gene056697 | MS.gene47901 | 0.815679 | 8.17E-52 | -1.69E-46 |
| MS.gene056856 | MS.gene47901 | 0.834762 | 2.48E-56 | -1.69E-46 |
| MS.gene057549 | MS.gene47901 | 0.812175 | 4.84E-51 | -1.69E-46 |
| MS.gene058015 | MS.gene47901 | 0.80814 | 3.58E-50 | -1.69E-46 |
| MS.gene058068 | MS.gene47901 | 0.800463 | 1.42E-48 | -1.69E-46 |
| MS.gene058334 | MS.gene47901 | 0.845195 | 4.72E-59 | -1.69E-46 |
| MS.gene058382 | MS.gene47901 | 0.887643 | 1.19E-72 | -1.69E-46 |
| MS.gene058386 | MS.gene47901 | 0.84075 | 7.20E-58 | -1.69E-46 |
| MS.gene05926 | MS.gene47901 | 0.804633 | 1.97E-49 | -1.69E-46 |
| MS.gene059685 | MS.gene47901 | 0.822647 | 2.12E-53 | -1.69E-46 |
| MS.gene060076 | MS.gene47901 | 0.824582 | 7.46E-54 | -1.69E-46 |
| MS.gene06042 | MS.gene47901 | 0.825668 | 4.14E-54 | -1.69E-46 |
| MS.gene060561 | MS.gene47901 | 0.811366 | 7.26E-51 | -1.69E-46 |
| MS.gene060762 | MS.gene47901 | -0.806248 | 9.02E-50 | -1.69E-46 |
| MS.gene060823 | MS.gene47901 | 0.816014 | 6.88E-52 | -1.69E-46 |
| MS.gene060982 | MS.gene47901 | -0.814306 | 1.65E-51 | -1.69E-46 |
| MS.gene061003 | MS.gene47901 | 0.800048 | 1.73E-48 | -1.69E-46 |
| MS.gene061044 | MS.gene47901 | 0.852616 | 4.11E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47901.t1 | MTR_8g088860 | 94.150 | 359 | 20 | 1 | 1 | 358 | 1 | 359 | 0.0 | 676 |
| MS.gene47901.t1 | MTR_8g088880 | 85.196 | 358 | 53 | 0 | 1 | 358 | 1 | 358 | 0.0 | 610 |
| MS.gene47901.t1 | MTR_8g088890 | 71.667 | 300 | 85 | 0 | 29 | 328 | 1 | 300 | 2.76e-156 | 441 |
| MS.gene47901.t1 | MTR_4g062570 | 42.697 | 356 | 202 | 2 | 1 | 356 | 1 | 354 | 3.03e-106 | 316 |
| MS.gene47901.t1 | MTR_4g072780 | 42.416 | 356 | 203 | 2 | 1 | 356 | 1 | 354 | 3.53e-105 | 313 |
| MS.gene47901.t1 | MTR_4g062550 | 42.135 | 356 | 204 | 2 | 1 | 356 | 1 | 354 | 8.81e-105 | 312 |
| MS.gene47901.t1 | MTR_4g032360 | 42.416 | 356 | 203 | 2 | 1 | 356 | 1 | 354 | 2.03e-104 | 311 |
| MS.gene47901.t1 | MTR_5g022720 | 34.884 | 258 | 136 | 4 | 96 | 348 | 33 | 263 | 4.52e-43 | 150 |
| MS.gene47901.t1 | MTR_4g076710 | 74.419 | 43 | 11 | 0 | 73 | 115 | 1 | 43 | 5.46e-17 | 74.3 |
| MS.gene47901.t1 | MTR_7g097000 | 30.435 | 138 | 95 | 1 | 199 | 336 | 367 | 503 | 1.12e-12 | 69.3 |
| MS.gene47901.t1 | MTR_1g072630 | 31.944 | 144 | 87 | 3 | 200 | 333 | 410 | 552 | 7.70e-12 | 67.0 |
| MS.gene47901.t1 | MTR_1g072600 | 35.185 | 108 | 69 | 1 | 200 | 307 | 426 | 532 | 1.33e-11 | 66.2 |
| MS.gene47901.t1 | MTR_1g072610 | 34.545 | 110 | 71 | 1 | 198 | 307 | 393 | 501 | 1.59e-11 | 65.9 |
| MS.gene47901.t1 | MTR_2g093550 | 27.746 | 173 | 110 | 7 | 191 | 358 | 66 | 228 | 2.07e-11 | 63.5 |
| MS.gene47901.t1 | MTR_7g096990 | 28.671 | 143 | 101 | 1 | 194 | 336 | 356 | 497 | 4.77e-11 | 64.3 |
| MS.gene47901.t1 | MTR_2g093630 | 28.488 | 172 | 108 | 7 | 191 | 357 | 55 | 216 | 4.79e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47901.t1 | AT1G07750 | 41.972 | 355 | 202 | 3 | 1 | 355 | 1 | 351 | 4.73e-100 | 300 |
| MS.gene47901.t1 | AT2G28680 | 41.737 | 357 | 206 | 2 | 1 | 357 | 1 | 355 | 2.60e-99 | 298 |
| MS.gene47901.t1 | AT1G03890 | 25.616 | 406 | 225 | 14 | 17 | 352 | 53 | 451 | 2.01e-22 | 98.2 |
| MS.gene47901.t1 | AT5G44120 | 23.245 | 413 | 236 | 12 | 13 | 351 | 49 | 454 | 5.26e-20 | 91.3 |
| MS.gene47901.t1 | AT1G03880 | 22.469 | 405 | 242 | 10 | 13 | 351 | 43 | 441 | 6.45e-20 | 90.9 |
| MS.gene47901.t1 | AT2G28490 | 23.373 | 415 | 244 | 14 | 8 | 357 | 89 | 494 | 2.62e-16 | 80.5 |
| MS.gene47901.t1 | AT5G44120 | 32.484 | 157 | 105 | 1 | 195 | 351 | 112 | 267 | 5.22e-16 | 77.8 |
| MS.gene47901.t1 | AT5G44120 | 32.484 | 157 | 105 | 1 | 195 | 351 | 195 | 350 | 1.18e-15 | 77.8 |
| MS.gene47901.t1 | AT4G28520 | 31.847 | 157 | 106 | 1 | 195 | 351 | 350 | 505 | 1.58e-14 | 75.1 |
| MS.gene47901.t1 | AT4G28520 | 32.484 | 157 | 105 | 1 | 195 | 351 | 279 | 434 | 4.08e-14 | 73.6 |
Find 77 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCTTAACATTATATTTCT+TGG | 0.148846 | 4.1:-11746604 | MS.gene47901:CDS |
| TTGTGACTAATCCCACATTT+TGG | 0.188452 | 4.1:+11746320 | None:intergenic |
| ACTTGAACCTAATGCTATTA+AGG | 0.231472 | 4.1:-11746236 | MS.gene47901:CDS |
| AACCCAACATCCTTAATAAA+AGG | 0.256810 | 4.1:+11746277 | None:intergenic |
| ACTGAATCGCAGGGGTAATT+AGG | 0.266264 | 4.1:+11746203 | None:intergenic |
| AAGCTCACACAAAGCCAAAA+AGG | 0.266595 | 4.1:-11746451 | MS.gene47901:CDS |
| TGTTGGGTTAAGTGTGATTA+GGG | 0.277054 | 4.1:-11746263 | MS.gene47901:CDS |
| ATGTTGGGTTAAGTGTGATT+AGG | 0.298094 | 4.1:-11746264 | MS.gene47901:CDS |
| AGGAAAATCTTTATCCGTTA+AGG | 0.313076 | 4.1:+11746297 | None:intergenic |
| TATAAACAAGTCAAACTAAA+TGG | 0.330642 | 4.1:+11745599 | None:intergenic |
| CTAGAAGAAATCAATGGATT+TGG | 0.338018 | 4.1:-11747343 | None:intergenic |
| GTGATAATCAAGTTAGAAAA+AGG | 0.339715 | 4.1:-11746424 | MS.gene47901:CDS |
| TACCTATTGGAGGTGTTTCA+TGG | 0.356456 | 4.1:-11746648 | MS.gene47901:CDS |
| TTTGTGGTTGCTAAAGTTGC+TGG | 0.378074 | 4.1:-11746070 | MS.gene47901:CDS |
| ATGGTGGTGGTTACTACATT+TGG | 0.379198 | 4.1:-11747281 | MS.gene47901:CDS |
| ACATTAGTCTTAGCCAAAAC+TGG | 0.384648 | 4.1:+11747243 | None:intergenic |
| ATAGAAATTGTGGGATTGAA+TGG | 0.390973 | 4.1:-11746151 | MS.gene47901:CDS |
| GAAGGTGCCTTAATAGCATT+AGG | 0.400052 | 4.1:+11746229 | None:intergenic |
| CATAAACAAAGTCTTTAGTT+AGG | 0.401436 | 4.1:+11746374 | None:intergenic |
| ACTTCAATAGCTCATGTTCC+AGG | 0.412111 | 4.1:-11746577 | MS.gene47901:CDS |
| ATTTACATTGCTAGAGGAAG+TGG | 0.419131 | 4.1:-11746178 | MS.gene47901:CDS |
| ACCTATGCCTAAGCCACAAT+TGG | 0.420447 | 4.1:-11746398 | MS.gene47901:CDS |
| AAGTTCTCAAGTTCCAGTTT+TGG | 0.422771 | 4.1:-11747256 | MS.gene47901:CDS |
| TAGCCGGAGAGACATCAGTA+TGG | 0.435918 | 4.1:-11745728 | MS.gene47901:CDS |
| GTTAGGTCCAATTGTGGCTT+AGG | 0.462868 | 4.1:+11746391 | None:intergenic |
| GTCAACTTGTTCTTCAGCCA+AGG | 0.466314 | 4.1:-11747212 | MS.gene47901:CDS |
| GGGATTAGTCACAACCTTAA+CGG | 0.468943 | 4.1:-11746311 | MS.gene47901:CDS |
| AGCAATGGTTGTGCTGTCTT+CGG | 0.471177 | 4.1:+11747312 | None:intergenic |
| GATGTCATACCTGTACCTAT+TGG | 0.485348 | 4.1:-11746661 | MS.gene47901:CDS |
| GCAGGGACTGATGGTGTAGT+TGG | 0.493416 | 4.1:-11746736 | MS.gene47901:intron |
| TGTCTTGGATGCTCAAGTTA+AGG | 0.494376 | 4.1:-11746122 | MS.gene47901:CDS |
| GCTAAAGTTGCTGGTGAAGA+TGG | 0.496979 | 4.1:-11746061 | MS.gene47901:CDS |
| ATGTAAATCAACTGAATCGC+AGG | 0.497055 | 4.1:+11746193 | None:intergenic |
| AAAGTGGGTTATGTCATAGA+AGG | 0.498483 | 4.1:-11747156 | MS.gene47901:intron |
| GCAGGGGTAATTAGGTTTGA+AGG | 0.504754 | 4.1:+11746211 | None:intergenic |
| CACCATGAAACACCTCCAAT+AGG | 0.508936 | 4.1:+11746646 | None:intergenic |
| AGCCGGAGAGACATCAGTAT+GGG | 0.531399 | 4.1:-11745727 | MS.gene47901:CDS |
| AACAAGTCAAACTAAATGGT+AGG | 0.531603 | 4.1:+11745603 | None:intergenic |
| AAAGACACTTGTTGCACAGT+AGG | 0.532747 | 4.1:+11745693 | None:intergenic |
| GTTTCATGGTGGTTCAATGA+TGG | 0.534589 | 4.1:-11746634 | MS.gene47901:CDS |
| GCTAAGACTAATGTTGGTGC+TGG | 0.541420 | 4.1:-11747234 | MS.gene47901:CDS |
| CAACCATTGCTTGAGGGAGA+TGG | 0.544530 | 4.1:-11747300 | MS.gene47901:CDS |
| TCAACTTGTTCTTCAGCCAA+GGG | 0.545644 | 4.1:-11747211 | MS.gene47901:CDS |
| ATTGAATGGAAAACGTGTCT+TGG | 0.545710 | 4.1:-11746137 | MS.gene47901:CDS |
| TTGTCAAACGCAGGGACTGA+TGG | 0.552548 | 4.1:-11746745 | MS.gene47901:intron |
| TTGGATGCTCAAGTTAAGGC+TGG | 0.552687 | 4.1:-11746118 | MS.gene47901:CDS |
| AGATATTAAGGCCCAAAATG+TGG | 0.553793 | 4.1:-11746332 | MS.gene47901:CDS |
| TTGTTCGAATCTGCATAATG+AGG | 0.553966 | 4.1:+11747177 | None:intergenic |
| CCTTTGTTTGAAGAGTTAGC+CGG | 0.556322 | 4.1:-11745744 | MS.gene47901:CDS |
| GTCATACCTGTACCTATTGG+AGG | 0.560557 | 4.1:-11746658 | MS.gene47901:CDS |
| TCCAATTGTGGCTTAGGCAT+AGG | 0.563240 | 4.1:+11746397 | None:intergenic |
| TTGCTTGAGGGAGATGGTGG+TGG | 0.563550 | 4.1:-11747294 | MS.gene47901:CDS |
| TCCCCATACTGATGTCTCTC+CGG | 0.565683 | 4.1:+11745725 | None:intergenic |
| ACAGCACAACCATTGCTTGA+GGG | 0.569100 | 4.1:-11747306 | MS.gene47901:CDS |
| AAAGTCCTTGAACACCACTT+AGG | 0.569759 | 4.1:+11746536 | None:intergenic |
| GAAACACCTCCAATAGGTAC+AGG | 0.571470 | 4.1:+11746652 | None:intergenic |
| ACAAGTCAAACTAAATGGTA+GGG | 0.575189 | 4.1:+11745604 | None:intergenic |
| TCTTTAGTTAGGTCCAATTG+TGG | 0.584862 | 4.1:+11746385 | None:intergenic |
| AGTTGCTGGTGAAGATGGAA+TGG | 0.592132 | 4.1:-11746056 | MS.gene47901:CDS |
| GATATTAAGGCCCAAAATGT+GGG | 0.596263 | 4.1:-11746331 | MS.gene47901:CDS |
| CAGTTGATTTACATTGCTAG+AGG | 0.600562 | 4.1:-11746184 | MS.gene47901:CDS |
| TGTAAATCAACTGAATCGCA+GGG | 0.608323 | 4.1:+11746194 | None:intergenic |
| CCACCATCTCCCTCAAGCAA+TGG | 0.609709 | 4.1:+11747297 | None:intergenic |
| GGAATGGTACTCCCCAGCAC+CGG | 0.611093 | 4.1:-11746715 | MS.gene47901:CDS |
| TGAGGAAGAGCAAATCCCCT+TGG | 0.612076 | 4.1:+11747195 | None:intergenic |
| TATGCAGATTCGAACAAAGT+GGG | 0.614043 | 4.1:-11747171 | MS.gene47901:CDS |
| GACTGATGGTGTAGTTGGAA+TGG | 0.615110 | 4.1:-11746731 | MS.gene47901:CDS |
| GGTAGGGAGAATGAGACTTG+TGG | 0.625569 | 4.1:+11745620 | None:intergenic |
| TTATGCAGATTCGAACAAAG+TGG | 0.626214 | 4.1:-11747172 | MS.gene47901:CDS |
| CAACTTGTTCTTCAGCCAAG+GGG | 0.631432 | 4.1:-11747210 | MS.gene47901:CDS |
| CCGGCTAACTCTTCAAACAA+AGG | 0.634501 | 4.1:+11745744 | None:intergenic |
| GACAGCACAACCATTGCTTG+AGG | 0.639965 | 4.1:-11747307 | MS.gene47901:CDS |
| CTATTGGAGGTGTTTCATGG+TGG | 0.653727 | 4.1:-11746645 | MS.gene47901:CDS |
| CCATTGCTTGAGGGAGATGG+TGG | 0.656696 | 4.1:-11747297 | MS.gene47901:CDS |
| TTGTTGCACAGTAGGTGACA+AGG | 0.665977 | 4.1:+11745701 | None:intergenic |
| GCCGGAGAGACATCAGTATG+GGG | 0.687095 | 4.1:-11745726 | MS.gene47901:CDS |
| GTAAATCAACTGAATCGCAG+GGG | 0.708656 | 4.1:+11746195 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATAATTTTTTAATAAT+TGG | + | chr4.1:11745918-11745937 | None:intergenic | 0.0% |
| !!! | AAAACAAAATTTTAACAATA+TGG | + | chr4.1:11746100-11746119 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTGACAAAAAAT+GGG | + | chr4.1:11745957-11745976 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTGACAAAAAA+TGG | + | chr4.1:11745958-11745977 | None:intergenic | 10.0% |
| !!! | ATACAATTTTAATAAAGATG+AGG | - | chr4.1:11746465-11746484 | MS.gene47901:CDS | 15.0% |
| !!! | ATTTGAAATTATTTTCGATT+TGG | - | chr4.1:11747113-11747132 | MS.gene47901:intron | 15.0% |
| !!! | TAAAGATTTTCCTTTTATTA+AGG | - | chr4.1:11746657-11746676 | MS.gene47901:CDS | 15.0% |
| !! | GATCTTAACATTATATTTCT+TGG | - | chr4.1:11746340-11746359 | MS.gene47901:CDS | 20.0% |
| !! | TGAATGAAAATTGAATTCTT+CGG | + | chr4.1:11747048-11747067 | None:intergenic | 20.0% |
| !!! | TTTTGATTCACAAATCAATT+TGG | - | chr4.1:11747079-11747098 | MS.gene47901:intron | 20.0% |
| ! | AAAAAATAAGTGAATTCTCC+TGG | + | chr4.1:11746388-11746407 | None:intergenic | 25.0% |
| ! | AAGTGGAAAAATAGAAATTG+TGG | - | chr4.1:11746783-11746802 | MS.gene47901:intron | 25.0% |
| ! | AGTGGAAAAATAGAAATTGT+GGG | - | chr4.1:11746784-11746803 | MS.gene47901:intron | 25.0% |
| ! | ATCTCTTAGATTTAATCTGT+TGG | - | chr4.1:11745845-11745864 | MS.gene47901:intron | 25.0% |
| ! | CATAAACAAAGTCTTTAGTT+AGG | + | chr4.1:11746573-11746592 | None:intergenic | 25.0% |
| ! | GTGATAATCAAGTTAGAAAA+AGG | - | chr4.1:11746520-11746539 | MS.gene47901:CDS | 25.0% |
| ! | TATGGAAAATCTTCATTCTA+GGG | + | chr4.1:11746144-11746163 | None:intergenic | 25.0% |
| ! | TGCTAAAAAACCAGATATTA+AGG | - | chr4.1:11746600-11746619 | MS.gene47901:CDS | 25.0% |
| ! | TTATGGAAAATCTTCATTCT+AGG | + | chr4.1:11746145-11746164 | None:intergenic | 25.0% |
| !! | ATGTTGCGATACATATTTTA+TGG | + | chr4.1:11746162-11746181 | None:intergenic | 25.0% |
| !! | TTCCTTTTATTAAGGATGTT+GGG | - | chr4.1:11746665-11746684 | MS.gene47901:CDS | 25.0% |
| !! | TTTCCTTTTATTAAGGATGT+TGG | - | chr4.1:11746664-11746683 | MS.gene47901:CDS | 25.0% |
| !!! | CAATAGAAACATCCATTTTT+AGG | + | chr4.1:11746001-11746020 | None:intergenic | 25.0% |
| !!! | CCATTTTTAGGTACTTAAAT+GGG | + | chr4.1:11745989-11746008 | None:intergenic | 25.0% |
| !!! | TCCATTTTTAGGTACTTAAA+TGG | + | chr4.1:11745990-11746009 | None:intergenic | 25.0% |
| !!! | TTCACTTATTTTTTCCTAAG+TGG | - | chr4.1:11746394-11746413 | MS.gene47901:CDS | 25.0% |
| AACCCAACATCCTTAATAAA+AGG | + | chr4.1:11746670-11746689 | None:intergenic | 30.0% | |
| ACTTGAACCTAATGCTATTA+AGG | - | chr4.1:11746708-11746727 | MS.gene47901:CDS | 30.0% | |
| AGGAAAATCTTTATCCGTTA+AGG | + | chr4.1:11746650-11746669 | None:intergenic | 30.0% | |
| ATAGAAATTGTGGGATTGAA+TGG | - | chr4.1:11746793-11746812 | MS.gene47901:intron | 30.0% | |
| CCCATTTAAGTACCTAAAAA+TGG | - | chr4.1:11745986-11746005 | MS.gene47901:intron | 30.0% | |
| TTAGCAACCACAAAAAATTG+TGG | + | chr4.1:11746868-11746887 | None:intergenic | 30.0% | |
| ! | CTTCAAAACAACTTCTTTTC+CGG | + | chr4.1:11746251-11746270 | None:intergenic | 30.0% |
| ! | GTTTAAAACTCCAACTTACT+TGG | + | chr4.1:11746938-11746957 | None:intergenic | 30.0% |
| !!! | GTTGTTTTGAAGCTTAAGAA+AGG | - | chr4.1:11746259-11746278 | MS.gene47901:CDS | 30.0% |
| AGATATTAAGGCCCAAAATG+TGG | - | chr4.1:11746612-11746631 | MS.gene47901:CDS | 35.0% | |
| ATGTAAATCAACTGAATCGC+AGG | + | chr4.1:11746754-11746773 | None:intergenic | 35.0% | |
| ATGTTGGGTTAAGTGTGATT+AGG | - | chr4.1:11746680-11746699 | MS.gene47901:CDS | 35.0% | |
| ATTGAATGGAAAACGTGTCT+TGG | - | chr4.1:11746807-11746826 | MS.gene47901:intron | 35.0% | |
| ATTTACATTGCTAGAGGAAG+TGG | - | chr4.1:11746766-11746785 | MS.gene47901:intron | 35.0% | |
| GATATTAAGGCCCAAAATGT+GGG | - | chr4.1:11746613-11746632 | MS.gene47901:CDS | 35.0% | |
| GTATCGCAACATCACTTATT+TGG | - | chr4.1:11746170-11746189 | MS.gene47901:CDS | 35.0% | |
| TATGCAGATTCGAACAAAGT+GGG | - | chr4.1:11745773-11745792 | MS.gene47901:intron | 35.0% | |
| TCTTTAGTTAGGTCCAATTG+TGG | + | chr4.1:11746562-11746581 | None:intergenic | 35.0% | |
| TGTAAATCAACTGAATCGCA+GGG | + | chr4.1:11746753-11746772 | None:intergenic | 35.0% | |
| TGTTGGGTTAAGTGTGATTA+GGG | - | chr4.1:11746681-11746700 | MS.gene47901:CDS | 35.0% | |
| TTATGCAGATTCGAACAAAG+TGG | - | chr4.1:11745772-11745791 | MS.gene47901:intron | 35.0% | |
| TTGTTCGAATCTGCATAATG+AGG | + | chr4.1:11745770-11745789 | None:intergenic | 35.0% | |
| ! | AAGTTCTCAAGTTCCAGTTT+TGG | - | chr4.1:11745688-11745707 | MS.gene47901:CDS | 35.0% |
| ! | ACATTTTGGGCCTTAATATC+TGG | + | chr4.1:11746613-11746632 | None:intergenic | 35.0% |
| ! | CAGTTGATTTACATTGCTAG+AGG | - | chr4.1:11746760-11746779 | MS.gene47901:intron | 35.0% |
| ! | CGATTTGGAGTACGTTATTA+AGG | - | chr4.1:11747128-11747147 | MS.gene47901:intron | 35.0% |
| ! | TGATTATCACAACCCCTTTT+TGG | + | chr4.1:11746510-11746529 | None:intergenic | 35.0% |
| ! | TGTGACTAATCCCACATTTT+GGG | + | chr4.1:11746626-11746645 | None:intergenic | 35.0% |
| ! | TTGTGACTAATCCCACATTT+TGG | + | chr4.1:11746627-11746646 | None:intergenic | 35.0% |
| ! | TTTTTCCTAAGTGGTGTTCA+AGG | - | chr4.1:11746403-11746422 | MS.gene47901:CDS | 35.0% |
| !! | AAAGTGGGTTATGTCATAGA+AGG | - | chr4.1:11745788-11745807 | MS.gene47901:intron | 35.0% |
| !! | ACATTAGTCTTAGCCAAAAC+TGG | + | chr4.1:11745704-11745723 | None:intergenic | 35.0% |
| !!! | GTTTTGGCTAAGACTAATGT+TGG | - | chr4.1:11745704-11745723 | MS.gene47901:CDS | 35.0% |
| !!! | TGTTGTGCCACAATTTTTTG+TGG | - | chr4.1:11746858-11746877 | MS.gene47901:intron | 35.0% |
| AAAGTCCTTGAACACCACTT+AGG | + | chr4.1:11746411-11746430 | None:intergenic | 40.0% | |
| AAGCTCACACAAAGCCAAAA+AGG | - | chr4.1:11746493-11746512 | MS.gene47901:CDS | 40.0% | |
| ACTTCAATAGCTCATGTTCC+AGG | - | chr4.1:11746367-11746386 | MS.gene47901:CDS | 40.0% | |
| AGCTCACACAAAGCCAAAAA+GGG | - | chr4.1:11746494-11746513 | MS.gene47901:CDS | 40.0% | |
| GATGTCATACCTGTACCTAT+TGG | - | chr4.1:11746283-11746302 | MS.gene47901:CDS | 40.0% | |
| GGTCAAATTTGTCAAACGCA+GGG | - | chr4.1:11746191-11746210 | MS.gene47901:CDS | 40.0% | |
| GTAAATCAACTGAATCGCAG+GGG | + | chr4.1:11746752-11746771 | None:intergenic | 40.0% | |
| GTGACAACTACCAAGTAAGT+TGG | - | chr4.1:11746925-11746944 | MS.gene47901:intron | 40.0% | |
| GTTTCATGGTGGTTCAATGA+TGG | - | chr4.1:11746310-11746329 | MS.gene47901:CDS | 40.0% | |
| TGGTCAAATTTGTCAAACGC+AGG | - | chr4.1:11746190-11746209 | MS.gene47901:CDS | 40.0% | |
| TGTCTTGGATGCTCAAGTTA+AGG | - | chr4.1:11746822-11746841 | MS.gene47901:intron | 40.0% | |
| TTTGTGGTTGCTAAAGTTGC+TGG | - | chr4.1:11746874-11746893 | MS.gene47901:intron | 40.0% | |
| ! | AAAGACACTTGTTGCACAGT+AGG | + | chr4.1:11747254-11747273 | None:intergenic | 40.0% |
| ! | CCTTTGTTTGAAGAGTTAGC+CGG | - | chr4.1:11747200-11747219 | MS.gene47901:CDS | 40.0% |
| ! | GCAACAAGTGTCTTTTAACG+TGG | - | chr4.1:11747259-11747278 | MS.gene47901:CDS | 40.0% |
| ! | TCAACTTGTTCTTCAGCCAA+GGG | - | chr4.1:11745733-11745752 | MS.gene47901:CDS | 40.0% |
| !! | ATGGTGGTGGTTACTACATT+TGG | - | chr4.1:11745663-11745682 | MS.gene47901:CDS | 40.0% |
| !! | GAAGGTGCCTTAATAGCATT+AGG | + | chr4.1:11746718-11746737 | None:intergenic | 40.0% |
| !! | GGGATTAGTCACAACCTTAA+CGG | - | chr4.1:11746633-11746652 | MS.gene47901:CDS | 40.0% |
| !! | TACCTATTGGAGGTGTTTCA+TGG | - | chr4.1:11746296-11746315 | MS.gene47901:CDS | 40.0% |
| !!! | TTTTTGGCTTTGTGTGAGCT+TGG | + | chr4.1:11746494-11746513 | None:intergenic | 40.0% |
| ACAGCACAACCATTGCTTGA+GGG | - | chr4.1:11745638-11745657 | MS.gene47901:CDS | 45.0% | |
| ACCTATGCCTAAGCCACAAT+TGG | - | chr4.1:11746546-11746565 | MS.gene47901:CDS | 45.0% | |
| ACTGAATCGCAGGGGTAATT+AGG | + | chr4.1:11746744-11746763 | None:intergenic | 45.0% | |
| AGCAATGGTTGTGCTGTCTT+CGG | + | chr4.1:11745635-11745654 | None:intergenic | 45.0% | |
| AGTTGCTGGTGAAGATGGAA+TGG | - | chr4.1:11746888-11746907 | MS.gene47901:intron | 45.0% | |
| CACCATGAAACACCTCCAAT+AGG | + | chr4.1:11746301-11746320 | None:intergenic | 45.0% | |
| CCGGCTAACTCTTCAAACAA+AGG | + | chr4.1:11747203-11747222 | None:intergenic | 45.0% | |
| GAAACACCTCCAATAGGTAC+AGG | + | chr4.1:11746295-11746314 | None:intergenic | 45.0% | |
| GCAGGGGTAATTAGGTTTGA+AGG | + | chr4.1:11746736-11746755 | None:intergenic | 45.0% | |
| GCTAAAGTTGCTGGTGAAGA+TGG | - | chr4.1:11746883-11746902 | MS.gene47901:intron | 45.0% | |
| GCTAAGACTAATGTTGGTGC+TGG | - | chr4.1:11745710-11745729 | MS.gene47901:CDS | 45.0% | |
| GCTCACACAAAGCCAAAAAG+GGG | - | chr4.1:11746495-11746514 | MS.gene47901:CDS | 45.0% | |
| GTCATACCTGTACCTATTGG+AGG | - | chr4.1:11746286-11746305 | MS.gene47901:CDS | 45.0% | |
| GTTAGGTCCAATTGTGGCTT+AGG | + | chr4.1:11746556-11746575 | None:intergenic | 45.0% | |
| TCCAATTGTGGCTTAGGCAT+AGG | + | chr4.1:11746550-11746569 | None:intergenic | 45.0% | |
| TTGGATGCTCAAGTTAAGGC+TGG | - | chr4.1:11746826-11746845 | MS.gene47901:intron | 45.0% | |
| TTGTTGCACAGTAGGTGACA+AGG | + | chr4.1:11747246-11747265 | None:intergenic | 45.0% | |
| ! | AACAACTTCTTTTCCGGTGC+TGG | + | chr4.1:11746245-11746264 | None:intergenic | 45.0% |
| ! | ACAACTTCTTTTCCGGTGCT+GGG | + | chr4.1:11746244-11746263 | None:intergenic | 45.0% |
| ! | CAACTTGTTCTTCAGCCAAG+GGG | - | chr4.1:11745734-11745753 | MS.gene47901:CDS | 45.0% |
| ! | GACTGATGGTGTAGTTGGAA+TGG | - | chr4.1:11746213-11746232 | MS.gene47901:CDS | 45.0% |
| ! | GTCAACTTGTTCTTCAGCCA+AGG | - | chr4.1:11745732-11745751 | MS.gene47901:CDS | 45.0% |
| !! | CTATTGGAGGTGTTTCATGG+TGG | - | chr4.1:11746299-11746318 | MS.gene47901:CDS | 45.0% |
| AGCCGGAGAGACATCAGTAT+GGG | - | chr4.1:11747217-11747236 | MS.gene47901:CDS | 50.0% | |
| CAACCATTGCTTGAGGGAGA+TGG | - | chr4.1:11745644-11745663 | MS.gene47901:CDS | 50.0% | |
| GACAGCACAACCATTGCTTG+AGG | - | chr4.1:11745637-11745656 | MS.gene47901:CDS | 50.0% | |
| GGTAGGGAGAATGAGACTTG+TGG | + | chr4.1:11747327-11747346 | None:intergenic | 50.0% | |
| TAGCCGGAGAGACATCAGTA+TGG | - | chr4.1:11747216-11747235 | MS.gene47901:CDS | 50.0% | |
| TCCCCATACTGATGTCTCTC+CGG | + | chr4.1:11747222-11747241 | None:intergenic | 50.0% | |
| TGAGGAAGAGCAAATCCCCT+TGG | + | chr4.1:11745752-11745771 | None:intergenic | 50.0% | |
| TTGTCAAACGCAGGGACTGA+TGG | - | chr4.1:11746199-11746218 | MS.gene47901:CDS | 50.0% | |
| !! | CAACTTCTTTTCCGGTGCTG+GGG | + | chr4.1:11746243-11746262 | None:intergenic | 50.0% |
| CCACCATCTCCCTCAAGCAA+TGG | + | chr4.1:11745650-11745669 | None:intergenic | 55.0% | |
| CCATTGCTTGAGGGAGATGG+TGG | - | chr4.1:11745647-11745666 | MS.gene47901:CDS | 55.0% | |
| GCCGGAGAGACATCAGTATG+GGG | - | chr4.1:11747218-11747237 | MS.gene47901:CDS | 55.0% | |
| ! | GCAGGGACTGATGGTGTAGT+TGG | - | chr4.1:11746208-11746227 | MS.gene47901:CDS | 55.0% |
| ! | TTGCTTGAGGGAGATGGTGG+TGG | - | chr4.1:11745650-11745669 | MS.gene47901:CDS | 55.0% |
| GGAATGGTACTCCCCAGCAC+CGG | - | chr4.1:11746229-11746248 | MS.gene47901:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 11745614 | 11747352 | 11745614 | ID=MS.gene47901 |
| chr4.1 | mRNA | 11745614 | 11747352 | 11745614 | ID=MS.gene47901.t1;Parent=MS.gene47901 |
| chr4.1 | exon | 11747157 | 11747352 | 11747157 | ID=MS.gene47901.t1.exon1;Parent=MS.gene47901.t1 |
| chr4.1 | CDS | 11747157 | 11747352 | 11747157 | ID=cds.MS.gene47901.t1;Parent=MS.gene47901.t1 |
| chr4.1 | exon | 11746028 | 11746754 | 11746028 | ID=MS.gene47901.t1.exon2;Parent=MS.gene47901.t1 |
| chr4.1 | CDS | 11746028 | 11746754 | 11746028 | ID=cds.MS.gene47901.t1;Parent=MS.gene47901.t1 |
| chr4.1 | exon | 11745614 | 11745767 | 11745614 | ID=MS.gene47901.t1.exon3;Parent=MS.gene47901.t1 |
| chr4.1 | CDS | 11745614 | 11745767 | 11745614 | ID=cds.MS.gene47901.t1;Parent=MS.gene47901.t1 |
| Gene Sequence |
| Protein sequence |
