Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27942.t1 | BAU98053.1 | 99.7 | 358 | 1 | 0 | 1 | 358 | 1 | 358 | 1.90E-199 | 704.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27942.t1 | P07730 | 23.2 | 388 | 212 | 8 | 35 | 338 | 80 | 465 | 1.7e-23 | 111.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27942.t1 | A0A161JQR4 | 99.7 | 358 | 1 | 0 | 1 | 358 | 1 | 358 | 1.4e-199 | 704.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050082 | MS.gene27942 | 0.841183 | 5.54E-58 | -1.69E-46 |
| MS.gene050170 | MS.gene27942 | -0.818354 | 2.05E-52 | -1.69E-46 |
| MS.gene050338 | MS.gene27942 | 0.856912 | 2.33E-62 | -1.69E-46 |
| MS.gene050496 | MS.gene27942 | -0.812383 | 4.36E-51 | -1.69E-46 |
| MS.gene050577 | MS.gene27942 | -0.80014 | 1.66E-48 | -1.69E-46 |
| MS.gene050904 | MS.gene27942 | -0.807364 | 5.24E-50 | -1.69E-46 |
| MS.gene051364 | MS.gene27942 | 0.822054 | 2.91E-53 | -1.69E-46 |
| MS.gene051366 | MS.gene27942 | 0.816775 | 4.65E-52 | -1.69E-46 |
| MS.gene051367 | MS.gene27942 | 0.828838 | 7.20E-55 | -1.69E-46 |
| MS.gene051422 | MS.gene27942 | 0.852451 | 4.58E-61 | -1.69E-46 |
| MS.gene051651 | MS.gene27942 | 0.812952 | 3.27E-51 | -1.69E-46 |
| MS.gene051718 | MS.gene27942 | 0.835538 | 1.58E-56 | -1.69E-46 |
| MS.gene052383 | MS.gene27942 | 0.804222 | 2.40E-49 | -1.69E-46 |
| MS.gene052494 | MS.gene27942 | 0.800664 | 1.30E-48 | -1.69E-46 |
| MS.gene052707 | MS.gene27942 | 0.828844 | 7.17E-55 | -1.69E-46 |
| MS.gene052710 | MS.gene27942 | 0.820254 | 7.56E-53 | -1.69E-46 |
| MS.gene053083 | MS.gene27942 | 0.801637 | 8.20E-49 | -1.69E-46 |
| MS.gene053568 | MS.gene27942 | 0.800871 | 1.18E-48 | -1.69E-46 |
| MS.gene055251 | MS.gene27942 | 0.868656 | 5.55E-66 | -1.69E-46 |
| MS.gene055751 | MS.gene27942 | -0.803487 | 3.41E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene27942 | -0.823484 | 1.35E-53 | -1.69E-46 |
| MS.gene056266 | MS.gene27942 | -0.819082 | 1.40E-52 | -1.69E-46 |
| MS.gene056354 | MS.gene27942 | 0.822144 | 2.77E-53 | -1.69E-46 |
| MS.gene056504 | MS.gene27942 | -0.808789 | 2.61E-50 | -1.69E-46 |
| MS.gene056692 | MS.gene27942 | -0.804437 | 2.16E-49 | -1.69E-46 |
| MS.gene056694 | MS.gene27942 | 0.809151 | 2.18E-50 | -1.69E-46 |
| MS.gene056697 | MS.gene27942 | 0.811733 | 6.04E-51 | -1.69E-46 |
| MS.gene056856 | MS.gene27942 | 0.831752 | 1.40E-55 | -1.69E-46 |
| MS.gene057549 | MS.gene27942 | 0.804148 | 2.48E-49 | -1.69E-46 |
| MS.gene058015 | MS.gene27942 | 0.817555 | 3.10E-52 | -1.69E-46 |
| MS.gene058334 | MS.gene27942 | 0.843999 | 9.92E-59 | -1.69E-46 |
| MS.gene058382 | MS.gene27942 | 0.885717 | 6.39E-72 | -1.69E-46 |
| MS.gene058386 | MS.gene27942 | 0.841166 | 5.60E-58 | -1.69E-46 |
| MS.gene05926 | MS.gene27942 | 0.802131 | 6.49E-49 | -1.69E-46 |
| MS.gene059685 | MS.gene27942 | 0.823832 | 1.12E-53 | -1.69E-46 |
| MS.gene060076 | MS.gene27942 | 0.830623 | 2.65E-55 | -1.69E-46 |
| MS.gene06042 | MS.gene27942 | 0.830724 | 2.50E-55 | -1.69E-46 |
| MS.gene060561 | MS.gene27942 | 0.809639 | 1.71E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene27942 | -0.801249 | 9.84E-49 | -1.69E-46 |
| MS.gene060823 | MS.gene27942 | 0.81448 | 1.51E-51 | -1.69E-46 |
| MS.gene060982 | MS.gene27942 | -0.814032 | 1.89E-51 | -1.69E-46 |
| MS.gene061003 | MS.gene27942 | 0.803301 | 3.72E-49 | -1.69E-46 |
| MS.gene061044 | MS.gene27942 | 0.856634 | 2.82E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27942.t1 | MTR_8g088860 | 94.150 | 359 | 20 | 1 | 1 | 358 | 1 | 359 | 0.0 | 676 |
| MS.gene27942.t1 | MTR_8g088880 | 85.196 | 358 | 53 | 0 | 1 | 358 | 1 | 358 | 0.0 | 610 |
| MS.gene27942.t1 | MTR_8g088890 | 71.667 | 300 | 85 | 0 | 29 | 328 | 1 | 300 | 2.76e-156 | 441 |
| MS.gene27942.t1 | MTR_4g062570 | 42.697 | 356 | 202 | 2 | 1 | 356 | 1 | 354 | 3.03e-106 | 316 |
| MS.gene27942.t1 | MTR_4g072780 | 42.416 | 356 | 203 | 2 | 1 | 356 | 1 | 354 | 3.53e-105 | 313 |
| MS.gene27942.t1 | MTR_4g062550 | 42.135 | 356 | 204 | 2 | 1 | 356 | 1 | 354 | 8.81e-105 | 312 |
| MS.gene27942.t1 | MTR_4g032360 | 42.416 | 356 | 203 | 2 | 1 | 356 | 1 | 354 | 2.03e-104 | 311 |
| MS.gene27942.t1 | MTR_5g022720 | 34.884 | 258 | 136 | 4 | 96 | 348 | 33 | 263 | 4.52e-43 | 150 |
| MS.gene27942.t1 | MTR_4g076710 | 74.419 | 43 | 11 | 0 | 73 | 115 | 1 | 43 | 5.46e-17 | 74.3 |
| MS.gene27942.t1 | MTR_7g097000 | 30.435 | 138 | 95 | 1 | 199 | 336 | 367 | 503 | 1.12e-12 | 69.3 |
| MS.gene27942.t1 | MTR_1g072630 | 31.944 | 144 | 87 | 3 | 200 | 333 | 410 | 552 | 7.70e-12 | 67.0 |
| MS.gene27942.t1 | MTR_1g072600 | 35.185 | 108 | 69 | 1 | 200 | 307 | 426 | 532 | 1.33e-11 | 66.2 |
| MS.gene27942.t1 | MTR_1g072610 | 34.545 | 110 | 71 | 1 | 198 | 307 | 393 | 501 | 1.59e-11 | 65.9 |
| MS.gene27942.t1 | MTR_2g093550 | 27.746 | 173 | 110 | 7 | 191 | 358 | 66 | 228 | 2.07e-11 | 63.5 |
| MS.gene27942.t1 | MTR_7g096990 | 28.671 | 143 | 101 | 1 | 194 | 336 | 356 | 497 | 4.77e-11 | 64.3 |
| MS.gene27942.t1 | MTR_2g093630 | 28.488 | 172 | 108 | 7 | 191 | 357 | 55 | 216 | 4.79e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27942.t1 | AT1G07750 | 41.972 | 355 | 202 | 3 | 1 | 355 | 1 | 351 | 4.73e-100 | 300 |
| MS.gene27942.t1 | AT2G28680 | 41.737 | 357 | 206 | 2 | 1 | 357 | 1 | 355 | 2.60e-99 | 298 |
| MS.gene27942.t1 | AT1G03890 | 25.616 | 406 | 225 | 14 | 17 | 352 | 53 | 451 | 2.01e-22 | 98.2 |
| MS.gene27942.t1 | AT5G44120 | 23.245 | 413 | 236 | 12 | 13 | 351 | 49 | 454 | 5.26e-20 | 91.3 |
| MS.gene27942.t1 | AT1G03880 | 22.469 | 405 | 242 | 10 | 13 | 351 | 43 | 441 | 6.45e-20 | 90.9 |
| MS.gene27942.t1 | AT2G28490 | 23.373 | 415 | 244 | 14 | 8 | 357 | 89 | 494 | 2.62e-16 | 80.5 |
| MS.gene27942.t1 | AT5G44120 | 32.484 | 157 | 105 | 1 | 195 | 351 | 112 | 267 | 5.22e-16 | 77.8 |
| MS.gene27942.t1 | AT5G44120 | 32.484 | 157 | 105 | 1 | 195 | 351 | 195 | 350 | 1.18e-15 | 77.8 |
| MS.gene27942.t1 | AT4G28520 | 31.847 | 157 | 106 | 1 | 195 | 351 | 350 | 505 | 1.58e-14 | 75.1 |
| MS.gene27942.t1 | AT4G28520 | 32.484 | 157 | 105 | 1 | 195 | 351 | 279 | 434 | 4.08e-14 | 73.6 |
Find 77 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCTTAACATTATATTTCT+TGG | 0.148846 | 4.4:-12209378 | MS.gene27942:CDS |
| TTGTGACTAATCCCACATTT+TGG | 0.188452 | 4.4:+12209094 | None:intergenic |
| ACTTGAACCTAATGCTATTA+AGG | 0.231472 | 4.4:-12209010 | MS.gene27942:CDS |
| AACCCAACATCCTTAATAAA+AGG | 0.256810 | 4.4:+12209051 | None:intergenic |
| ACTGAATCGCAGGGGTAATT+AGG | 0.266264 | 4.4:+12208977 | None:intergenic |
| AAGCTCACACAAAGCCAAAA+AGG | 0.266595 | 4.4:-12209225 | MS.gene27942:CDS |
| TGTTGGGTTAAGTGTGATTA+GGG | 0.277054 | 4.4:-12209037 | MS.gene27942:CDS |
| ATGTTGGGTTAAGTGTGATT+AGG | 0.298094 | 4.4:-12209038 | MS.gene27942:CDS |
| AGGAAAATCTTTATCCGTTA+AGG | 0.313076 | 4.4:+12209071 | None:intergenic |
| TATAAACAAGTCAAACTAAA+TGG | 0.330642 | 4.4:+12208373 | None:intergenic |
| CTAGAAGAAATCAATGGATT+TGG | 0.338018 | 4.4:-12210115 | None:intergenic |
| GTGATAATCAAGTTAGAAAA+AGG | 0.339715 | 4.4:-12209198 | MS.gene27942:CDS |
| TACCTATTGGAGGTGTTTCA+TGG | 0.356456 | 4.4:-12209422 | MS.gene27942:CDS |
| TTTGTGGTTGCTAAAGTTGC+TGG | 0.378074 | 4.4:-12208844 | MS.gene27942:CDS |
| ATGGTGGTGGTTACTACATT+TGG | 0.379198 | 4.4:-12210053 | MS.gene27942:CDS |
| ACATTAGTCTTAGCCAAAAC+TGG | 0.384648 | 4.4:+12210015 | None:intergenic |
| ATAGAAATTGTGGGATTGAA+TGG | 0.390973 | 4.4:-12208925 | MS.gene27942:CDS |
| GAAGGTGCCTTAATAGCATT+AGG | 0.400052 | 4.4:+12209003 | None:intergenic |
| CATAAACAAAGTCTTTAGTT+AGG | 0.401436 | 4.4:+12209148 | None:intergenic |
| ACTTCAATAGCTCATGTTCC+AGG | 0.412111 | 4.4:-12209351 | MS.gene27942:CDS |
| ATTTACATTGCTAGAGGAAG+TGG | 0.419131 | 4.4:-12208952 | MS.gene27942:CDS |
| ACCTATGCCTAAGCCACAAT+TGG | 0.420447 | 4.4:-12209172 | MS.gene27942:CDS |
| AAGTTCTCAAGTTCCAGTTT+TGG | 0.422771 | 4.4:-12210028 | MS.gene27942:CDS |
| TAGCCGGAGAGACATCAGTA+TGG | 0.435918 | 4.4:-12208502 | MS.gene27942:CDS |
| GTTAGGTCCAATTGTGGCTT+AGG | 0.462868 | 4.4:+12209165 | None:intergenic |
| GTCAACTTGTTCTTCAGCCA+AGG | 0.466314 | 4.4:-12209984 | MS.gene27942:CDS |
| GGGATTAGTCACAACCTTAA+CGG | 0.468943 | 4.4:-12209085 | MS.gene27942:CDS |
| AGCAATGGTTGTGCTGTCTT+CGG | 0.471177 | 4.4:+12210084 | None:intergenic |
| GATGTCATACCTGTACCTAT+TGG | 0.485348 | 4.4:-12209435 | MS.gene27942:CDS |
| GCAGGGACTGATGGTGTAGT+TGG | 0.493416 | 4.4:-12209510 | MS.gene27942:intron |
| TGTCTTGGATGCTCAAGTTA+AGG | 0.494376 | 4.4:-12208896 | MS.gene27942:CDS |
| GCTAAAGTTGCTGGTGAAGA+TGG | 0.496979 | 4.4:-12208835 | MS.gene27942:CDS |
| ATGTAAATCAACTGAATCGC+AGG | 0.497055 | 4.4:+12208967 | None:intergenic |
| AAAGTGGGTTATGTCATAGA+AGG | 0.498483 | 4.4:-12209928 | MS.gene27942:intron |
| GCAGGGGTAATTAGGTTTGA+AGG | 0.504754 | 4.4:+12208985 | None:intergenic |
| CACCATGAAACACCTCCAAT+AGG | 0.508936 | 4.4:+12209420 | None:intergenic |
| AGCCGGAGAGACATCAGTAT+GGG | 0.531399 | 4.4:-12208501 | MS.gene27942:CDS |
| AACAAGTCAAACTAAATGGT+AGG | 0.531603 | 4.4:+12208377 | None:intergenic |
| AAAGACACTTGTTGCACAGT+AGG | 0.532747 | 4.4:+12208467 | None:intergenic |
| GTTTCATGGTGGTTCAATGA+TGG | 0.534589 | 4.4:-12209408 | MS.gene27942:CDS |
| GCTAAGACTAATGTTGGTGC+TGG | 0.541420 | 4.4:-12210006 | MS.gene27942:CDS |
| CAACCATTGCTTGAGGGAGA+TGG | 0.544530 | 4.4:-12210072 | MS.gene27942:CDS |
| TCAACTTGTTCTTCAGCCAA+GGG | 0.545644 | 4.4:-12209983 | MS.gene27942:CDS |
| ATTGAATGGAAAACGTGTCT+TGG | 0.545710 | 4.4:-12208911 | MS.gene27942:CDS |
| TTGTCAAACGCAGGGACTGA+TGG | 0.552548 | 4.4:-12209519 | MS.gene27942:intron |
| TTGGATGCTCAAGTTAAGGC+TGG | 0.552687 | 4.4:-12208892 | MS.gene27942:CDS |
| AGATATTAAGGCCCAAAATG+TGG | 0.553793 | 4.4:-12209106 | MS.gene27942:CDS |
| TTGTTCGAATCTGCATAATG+AGG | 0.553966 | 4.4:+12209949 | None:intergenic |
| CCTTTGTTTGAAGAGTTAGC+CGG | 0.556322 | 4.4:-12208518 | MS.gene27942:CDS |
| GTCATACCTGTACCTATTGG+AGG | 0.560557 | 4.4:-12209432 | MS.gene27942:CDS |
| TCCAATTGTGGCTTAGGCAT+AGG | 0.563240 | 4.4:+12209171 | None:intergenic |
| TTGCTTGAGGGAGATGGTGG+TGG | 0.563550 | 4.4:-12210066 | MS.gene27942:CDS |
| TCCCCATACTGATGTCTCTC+CGG | 0.565683 | 4.4:+12208499 | None:intergenic |
| ACAGCACAACCATTGCTTGA+GGG | 0.569100 | 4.4:-12210078 | MS.gene27942:CDS |
| AAAGTCCTTGAACACCACTT+AGG | 0.569759 | 4.4:+12209310 | None:intergenic |
| GAAACACCTCCAATAGGTAC+AGG | 0.571470 | 4.4:+12209426 | None:intergenic |
| ACAAGTCAAACTAAATGGTA+GGG | 0.575189 | 4.4:+12208378 | None:intergenic |
| TCTTTAGTTAGGTCCAATTG+TGG | 0.584862 | 4.4:+12209159 | None:intergenic |
| AGTTGCTGGTGAAGATGGAA+TGG | 0.592132 | 4.4:-12208830 | MS.gene27942:CDS |
| GATATTAAGGCCCAAAATGT+GGG | 0.596263 | 4.4:-12209105 | MS.gene27942:CDS |
| CAGTTGATTTACATTGCTAG+AGG | 0.600562 | 4.4:-12208958 | MS.gene27942:CDS |
| TGTAAATCAACTGAATCGCA+GGG | 0.608323 | 4.4:+12208968 | None:intergenic |
| CCACCATCTCCCTCAAGCAA+TGG | 0.609709 | 4.4:+12210069 | None:intergenic |
| GGAATGGTACTCCCCAGCAC+CGG | 0.611093 | 4.4:-12209489 | MS.gene27942:CDS |
| TGAGGAAGAGCAAATCCCCT+TGG | 0.612076 | 4.4:+12209967 | None:intergenic |
| TATGCAGATTCGAACAAAGT+GGG | 0.614043 | 4.4:-12209943 | MS.gene27942:CDS |
| GACTGATGGTGTAGTTGGAA+TGG | 0.615110 | 4.4:-12209505 | MS.gene27942:CDS |
| GGTAGGGAGAATGAGACTTG+TGG | 0.625569 | 4.4:+12208394 | None:intergenic |
| TTATGCAGATTCGAACAAAG+TGG | 0.626214 | 4.4:-12209944 | MS.gene27942:CDS |
| CAACTTGTTCTTCAGCCAAG+GGG | 0.631432 | 4.4:-12209982 | MS.gene27942:CDS |
| CCGGCTAACTCTTCAAACAA+AGG | 0.634501 | 4.4:+12208518 | None:intergenic |
| GACAGCACAACCATTGCTTG+AGG | 0.639965 | 4.4:-12210079 | MS.gene27942:CDS |
| CTATTGGAGGTGTTTCATGG+TGG | 0.653727 | 4.4:-12209419 | MS.gene27942:CDS |
| CCATTGCTTGAGGGAGATGG+TGG | 0.656696 | 4.4:-12210069 | MS.gene27942:CDS |
| TTGTTGCACAGTAGGTGACA+AGG | 0.665977 | 4.4:+12208475 | None:intergenic |
| GCCGGAGAGACATCAGTATG+GGG | 0.687095 | 4.4:-12208500 | MS.gene27942:CDS |
| GTAAATCAACTGAATCGCAG+GGG | 0.708656 | 4.4:+12208969 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATAATTTTTTAATAAT+TGG | + | chr4.4:12208691-12208710 | None:intergenic | 0.0% |
| !!! | AAAACAAAATTTTAACAATA+TGG | + | chr4.4:12208872-12208891 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTGACAAAAAAT+GGG | + | chr4.4:12208730-12208749 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTGACAAAAAA+TGG | + | chr4.4:12208731-12208750 | None:intergenic | 10.0% |
| !!! | ATACAATTTTAATAAAGATG+AGG | - | chr4.4:12209237-12209256 | MS.gene27942:CDS | 15.0% |
| !!! | ATTTGAAATTATTTTCGATT+TGG | - | chr4.4:12209885-12209904 | MS.gene27942:intron | 15.0% |
| !!! | TAAAGATTTTCCTTTTATTA+AGG | - | chr4.4:12209429-12209448 | MS.gene27942:CDS | 15.0% |
| !! | GATCTTAACATTATATTTCT+TGG | - | chr4.4:12209112-12209131 | MS.gene27942:CDS | 20.0% |
| !! | TGAATGAAAATTGAATTCTT+CGG | + | chr4.4:12209820-12209839 | None:intergenic | 20.0% |
| !!! | TTTTGATTCACAAATCAATT+TGG | - | chr4.4:12209851-12209870 | MS.gene27942:intron | 20.0% |
| ! | AAAAAATAAGTGAATTCTCC+TGG | + | chr4.4:12209160-12209179 | None:intergenic | 25.0% |
| ! | AAGTGGAAAAATAGAAATTG+TGG | - | chr4.4:12209555-12209574 | MS.gene27942:intron | 25.0% |
| ! | AGTGGAAAAATAGAAATTGT+GGG | - | chr4.4:12209556-12209575 | MS.gene27942:intron | 25.0% |
| ! | ATCTCTTAGATTTAATCTGT+TGG | - | chr4.4:12208619-12208638 | MS.gene27942:intron | 25.0% |
| ! | CATAAACAAAGTCTTTAGTT+AGG | + | chr4.4:12209345-12209364 | None:intergenic | 25.0% |
| ! | GTGATAATCAAGTTAGAAAA+AGG | - | chr4.4:12209292-12209311 | MS.gene27942:CDS | 25.0% |
| ! | TATGGAAAATCTTCATTCTA+GGG | + | chr4.4:12208916-12208935 | None:intergenic | 25.0% |
| ! | TGCTAAAAAACCAGATATTA+AGG | - | chr4.4:12209372-12209391 | MS.gene27942:CDS | 25.0% |
| ! | TTATGGAAAATCTTCATTCT+AGG | + | chr4.4:12208917-12208936 | None:intergenic | 25.0% |
| !! | ATGTTGCGATACATATTTTA+TGG | + | chr4.4:12208934-12208953 | None:intergenic | 25.0% |
| !! | TTCCTTTTATTAAGGATGTT+GGG | - | chr4.4:12209437-12209456 | MS.gene27942:CDS | 25.0% |
| !! | TTTCCTTTTATTAAGGATGT+TGG | - | chr4.4:12209436-12209455 | MS.gene27942:CDS | 25.0% |
| !!! | CAATAGAAACATCCATTTTT+AGG | + | chr4.4:12208773-12208792 | None:intergenic | 25.0% |
| !!! | CCATTTTTAGGTACTTAAAT+GGG | + | chr4.4:12208761-12208780 | None:intergenic | 25.0% |
| !!! | TCCATTTTTAGGTACTTAAA+TGG | + | chr4.4:12208762-12208781 | None:intergenic | 25.0% |
| !!! | TTCACTTATTTTTTCCTAAG+TGG | - | chr4.4:12209166-12209185 | MS.gene27942:CDS | 25.0% |
| AACCCAACATCCTTAATAAA+AGG | + | chr4.4:12209442-12209461 | None:intergenic | 30.0% | |
| ACTTGAACCTAATGCTATTA+AGG | - | chr4.4:12209480-12209499 | MS.gene27942:CDS | 30.0% | |
| AGGAAAATCTTTATCCGTTA+AGG | + | chr4.4:12209422-12209441 | None:intergenic | 30.0% | |
| ATAGAAATTGTGGGATTGAA+TGG | - | chr4.4:12209565-12209584 | MS.gene27942:intron | 30.0% | |
| CCCATTTAAGTACCTAAAAA+TGG | - | chr4.4:12208758-12208777 | MS.gene27942:intron | 30.0% | |
| TTAGCAACCACAAAAAATTG+TGG | + | chr4.4:12209640-12209659 | None:intergenic | 30.0% | |
| ! | CTTCAAAACAACTTCTTTTC+CGG | + | chr4.4:12209023-12209042 | None:intergenic | 30.0% |
| ! | GTTTAAAACTCCAACTTACT+TGG | + | chr4.4:12209710-12209729 | None:intergenic | 30.0% |
| !!! | GTTGTTTTGAAGCTTAAGAA+AGG | - | chr4.4:12209031-12209050 | MS.gene27942:CDS | 30.0% |
| AGATATTAAGGCCCAAAATG+TGG | - | chr4.4:12209384-12209403 | MS.gene27942:CDS | 35.0% | |
| ATGTAAATCAACTGAATCGC+AGG | + | chr4.4:12209526-12209545 | None:intergenic | 35.0% | |
| ATGTTGGGTTAAGTGTGATT+AGG | - | chr4.4:12209452-12209471 | MS.gene27942:CDS | 35.0% | |
| ATTGAATGGAAAACGTGTCT+TGG | - | chr4.4:12209579-12209598 | MS.gene27942:intron | 35.0% | |
| ATTTACATTGCTAGAGGAAG+TGG | - | chr4.4:12209538-12209557 | MS.gene27942:intron | 35.0% | |
| GATATTAAGGCCCAAAATGT+GGG | - | chr4.4:12209385-12209404 | MS.gene27942:CDS | 35.0% | |
| GTATCGCAACATCACTTATT+TGG | - | chr4.4:12208942-12208961 | MS.gene27942:CDS | 35.0% | |
| TATGCAGATTCGAACAAAGT+GGG | - | chr4.4:12208547-12208566 | MS.gene27942:intron | 35.0% | |
| TCTTTAGTTAGGTCCAATTG+TGG | + | chr4.4:12209334-12209353 | None:intergenic | 35.0% | |
| TGTAAATCAACTGAATCGCA+GGG | + | chr4.4:12209525-12209544 | None:intergenic | 35.0% | |
| TGTTGGGTTAAGTGTGATTA+GGG | - | chr4.4:12209453-12209472 | MS.gene27942:CDS | 35.0% | |
| TTATGCAGATTCGAACAAAG+TGG | - | chr4.4:12208546-12208565 | MS.gene27942:intron | 35.0% | |
| TTGTTCGAATCTGCATAATG+AGG | + | chr4.4:12208544-12208563 | None:intergenic | 35.0% | |
| ! | AAGTTCTCAAGTTCCAGTTT+TGG | - | chr4.4:12208462-12208481 | MS.gene27942:CDS | 35.0% |
| ! | ACATTTTGGGCCTTAATATC+TGG | + | chr4.4:12209385-12209404 | None:intergenic | 35.0% |
| ! | CAGTTGATTTACATTGCTAG+AGG | - | chr4.4:12209532-12209551 | MS.gene27942:intron | 35.0% |
| ! | CGATTTGGAGTACGTTATTA+AGG | - | chr4.4:12209900-12209919 | MS.gene27942:intron | 35.0% |
| ! | TGATTATCACAACCCCTTTT+TGG | + | chr4.4:12209282-12209301 | None:intergenic | 35.0% |
| ! | TGTGACTAATCCCACATTTT+GGG | + | chr4.4:12209398-12209417 | None:intergenic | 35.0% |
| ! | TTGTGACTAATCCCACATTT+TGG | + | chr4.4:12209399-12209418 | None:intergenic | 35.0% |
| ! | TTTTTCCTAAGTGGTGTTCA+AGG | - | chr4.4:12209175-12209194 | MS.gene27942:CDS | 35.0% |
| !! | AAAGTGGGTTATGTCATAGA+AGG | - | chr4.4:12208562-12208581 | MS.gene27942:intron | 35.0% |
| !! | ACATTAGTCTTAGCCAAAAC+TGG | + | chr4.4:12208478-12208497 | None:intergenic | 35.0% |
| !!! | GTTTTGGCTAAGACTAATGT+TGG | - | chr4.4:12208478-12208497 | MS.gene27942:CDS | 35.0% |
| !!! | TGTTGTGCCACAATTTTTTG+TGG | - | chr4.4:12209630-12209649 | MS.gene27942:intron | 35.0% |
| AAAGTCCTTGAACACCACTT+AGG | + | chr4.4:12209183-12209202 | None:intergenic | 40.0% | |
| AAGCTCACACAAAGCCAAAA+AGG | - | chr4.4:12209265-12209284 | MS.gene27942:CDS | 40.0% | |
| ACTTCAATAGCTCATGTTCC+AGG | - | chr4.4:12209139-12209158 | MS.gene27942:CDS | 40.0% | |
| AGCTCACACAAAGCCAAAAA+GGG | - | chr4.4:12209266-12209285 | MS.gene27942:CDS | 40.0% | |
| GATGTCATACCTGTACCTAT+TGG | - | chr4.4:12209055-12209074 | MS.gene27942:CDS | 40.0% | |
| GGTCAAATTTGTCAAACGCA+GGG | - | chr4.4:12208963-12208982 | MS.gene27942:CDS | 40.0% | |
| GTAAATCAACTGAATCGCAG+GGG | + | chr4.4:12209524-12209543 | None:intergenic | 40.0% | |
| GTGACAACTACCAAGTAAGT+TGG | - | chr4.4:12209697-12209716 | MS.gene27942:intron | 40.0% | |
| GTTTCATGGTGGTTCAATGA+TGG | - | chr4.4:12209082-12209101 | MS.gene27942:CDS | 40.0% | |
| TGGTCAAATTTGTCAAACGC+AGG | - | chr4.4:12208962-12208981 | MS.gene27942:CDS | 40.0% | |
| TGTCTTGGATGCTCAAGTTA+AGG | - | chr4.4:12209594-12209613 | MS.gene27942:intron | 40.0% | |
| TTTGTGGTTGCTAAAGTTGC+TGG | - | chr4.4:12209646-12209665 | MS.gene27942:intron | 40.0% | |
| ! | AAAGACACTTGTTGCACAGT+AGG | + | chr4.4:12210026-12210045 | None:intergenic | 40.0% |
| ! | CCTTTGTTTGAAGAGTTAGC+CGG | - | chr4.4:12209972-12209991 | MS.gene27942:CDS | 40.0% |
| ! | GCAACAAGTGTCTTTTAACG+TGG | - | chr4.4:12210031-12210050 | MS.gene27942:CDS | 40.0% |
| ! | TCAACTTGTTCTTCAGCCAA+GGG | - | chr4.4:12208507-12208526 | MS.gene27942:CDS | 40.0% |
| !! | ATGGTGGTGGTTACTACATT+TGG | - | chr4.4:12208437-12208456 | MS.gene27942:CDS | 40.0% |
| !! | GAAGGTGCCTTAATAGCATT+AGG | + | chr4.4:12209490-12209509 | None:intergenic | 40.0% |
| !! | GGGATTAGTCACAACCTTAA+CGG | - | chr4.4:12209405-12209424 | MS.gene27942:CDS | 40.0% |
| !! | TACCTATTGGAGGTGTTTCA+TGG | - | chr4.4:12209068-12209087 | MS.gene27942:CDS | 40.0% |
| !!! | TTTTTGGCTTTGTGTGAGCT+TGG | + | chr4.4:12209266-12209285 | None:intergenic | 40.0% |
| ACAGCACAACCATTGCTTGA+GGG | - | chr4.4:12208412-12208431 | MS.gene27942:CDS | 45.0% | |
| ACCTATGCCTAAGCCACAAT+TGG | - | chr4.4:12209318-12209337 | MS.gene27942:CDS | 45.0% | |
| ACTGAATCGCAGGGGTAATT+AGG | + | chr4.4:12209516-12209535 | None:intergenic | 45.0% | |
| AGCAATGGTTGTGCTGTCTT+CGG | + | chr4.4:12208409-12208428 | None:intergenic | 45.0% | |
| AGTTGCTGGTGAAGATGGAA+TGG | - | chr4.4:12209660-12209679 | MS.gene27942:intron | 45.0% | |
| CACCATGAAACACCTCCAAT+AGG | + | chr4.4:12209073-12209092 | None:intergenic | 45.0% | |
| CCGGCTAACTCTTCAAACAA+AGG | + | chr4.4:12209975-12209994 | None:intergenic | 45.0% | |
| GAAACACCTCCAATAGGTAC+AGG | + | chr4.4:12209067-12209086 | None:intergenic | 45.0% | |
| GCAGGGGTAATTAGGTTTGA+AGG | + | chr4.4:12209508-12209527 | None:intergenic | 45.0% | |
| GCTAAAGTTGCTGGTGAAGA+TGG | - | chr4.4:12209655-12209674 | MS.gene27942:intron | 45.0% | |
| GCTAAGACTAATGTTGGTGC+TGG | - | chr4.4:12208484-12208503 | MS.gene27942:CDS | 45.0% | |
| GCTCACACAAAGCCAAAAAG+GGG | - | chr4.4:12209267-12209286 | MS.gene27942:CDS | 45.0% | |
| GTCATACCTGTACCTATTGG+AGG | - | chr4.4:12209058-12209077 | MS.gene27942:CDS | 45.0% | |
| GTTAGGTCCAATTGTGGCTT+AGG | + | chr4.4:12209328-12209347 | None:intergenic | 45.0% | |
| TCCAATTGTGGCTTAGGCAT+AGG | + | chr4.4:12209322-12209341 | None:intergenic | 45.0% | |
| TTGGATGCTCAAGTTAAGGC+TGG | - | chr4.4:12209598-12209617 | MS.gene27942:intron | 45.0% | |
| TTGTTGCACAGTAGGTGACA+AGG | + | chr4.4:12210018-12210037 | None:intergenic | 45.0% | |
| ! | AACAACTTCTTTTCCGGTGC+TGG | + | chr4.4:12209017-12209036 | None:intergenic | 45.0% |
| ! | ACAACTTCTTTTCCGGTGCT+GGG | + | chr4.4:12209016-12209035 | None:intergenic | 45.0% |
| ! | CAACTTGTTCTTCAGCCAAG+GGG | - | chr4.4:12208508-12208527 | MS.gene27942:CDS | 45.0% |
| ! | GACTGATGGTGTAGTTGGAA+TGG | - | chr4.4:12208985-12209004 | MS.gene27942:CDS | 45.0% |
| ! | GTCAACTTGTTCTTCAGCCA+AGG | - | chr4.4:12208506-12208525 | MS.gene27942:CDS | 45.0% |
| !! | CTATTGGAGGTGTTTCATGG+TGG | - | chr4.4:12209071-12209090 | MS.gene27942:CDS | 45.0% |
| AGCCGGAGAGACATCAGTAT+GGG | - | chr4.4:12209989-12210008 | MS.gene27942:CDS | 50.0% | |
| CAACCATTGCTTGAGGGAGA+TGG | - | chr4.4:12208418-12208437 | MS.gene27942:CDS | 50.0% | |
| GACAGCACAACCATTGCTTG+AGG | - | chr4.4:12208411-12208430 | MS.gene27942:CDS | 50.0% | |
| GGTAGGGAGAATGAGACTTG+TGG | + | chr4.4:12210099-12210118 | None:intergenic | 50.0% | |
| TAGCCGGAGAGACATCAGTA+TGG | - | chr4.4:12209988-12210007 | MS.gene27942:CDS | 50.0% | |
| TCCCCATACTGATGTCTCTC+CGG | + | chr4.4:12209994-12210013 | None:intergenic | 50.0% | |
| TGAGGAAGAGCAAATCCCCT+TGG | + | chr4.4:12208526-12208545 | None:intergenic | 50.0% | |
| TTGTCAAACGCAGGGACTGA+TGG | - | chr4.4:12208971-12208990 | MS.gene27942:CDS | 50.0% | |
| !! | CAACTTCTTTTCCGGTGCTG+GGG | + | chr4.4:12209015-12209034 | None:intergenic | 50.0% |
| CCACCATCTCCCTCAAGCAA+TGG | + | chr4.4:12208424-12208443 | None:intergenic | 55.0% | |
| CCATTGCTTGAGGGAGATGG+TGG | - | chr4.4:12208421-12208440 | MS.gene27942:CDS | 55.0% | |
| GCCGGAGAGACATCAGTATG+GGG | - | chr4.4:12209990-12210009 | MS.gene27942:CDS | 55.0% | |
| ! | GCAGGGACTGATGGTGTAGT+TGG | - | chr4.4:12208980-12208999 | MS.gene27942:CDS | 55.0% |
| ! | TTGCTTGAGGGAGATGGTGG+TGG | - | chr4.4:12208424-12208443 | MS.gene27942:CDS | 55.0% |
| GGAATGGTACTCCCCAGCAC+CGG | - | chr4.4:12209001-12209020 | MS.gene27942:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 12208388 | 12210124 | 12208388 | ID=MS.gene27942 |
| chr4.4 | mRNA | 12208388 | 12210124 | 12208388 | ID=MS.gene27942.t1;Parent=MS.gene27942 |
| chr4.4 | exon | 12209929 | 12210124 | 12209929 | ID=MS.gene27942.t1.exon1;Parent=MS.gene27942.t1 |
| chr4.4 | CDS | 12209929 | 12210124 | 12209929 | ID=cds.MS.gene27942.t1;Parent=MS.gene27942.t1 |
| chr4.4 | exon | 12208802 | 12209528 | 12208802 | ID=MS.gene27942.t1.exon2;Parent=MS.gene27942.t1 |
| chr4.4 | CDS | 12208802 | 12209528 | 12208802 | ID=cds.MS.gene27942.t1;Parent=MS.gene27942.t1 |
| chr4.4 | exon | 12208388 | 12208541 | 12208388 | ID=MS.gene27942.t1.exon3;Parent=MS.gene27942.t1 |
| chr4.4 | CDS | 12208388 | 12208541 | 12208388 | ID=cds.MS.gene27942.t1;Parent=MS.gene27942.t1 |
| Gene Sequence |
| Protein sequence |
