AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061432

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061432.t1 MTR_7g023350 99.206 252 2 0 1 252 1 252 1.36e-178 491
MS.gene061432.t1 MTR_1g115405 85.714 252 36 0 1 252 1 252 2.35e-155 432
MS.gene061432.t1 MTR_4g063090 78.175 252 55 0 1 252 1 252 1.60e-133 377
MS.gene061432.t1 MTR_7g103030 69.841 252 74 2 1 252 1 250 1.53e-109 316
MS.gene061432.t1 MTR_1g077540 53.876 258 113 1 1 252 1 258 1.67e-98 288
MS.gene061432.t1 MTR_2g101370 60.729 247 95 2 6 252 5 249 2.95e-95 280
MS.gene061432.t1 MTR_8g013680 59.514 247 98 2 6 252 4 248 6.77e-94 276
MS.gene061432.t1 MTR_6g069040 56.471 255 108 1 1 252 1 255 1.94e-93 275
MS.gene061432.t1 MTR_1g006490 51.822 247 114 3 5 251 3 244 4.15e-81 244
MS.gene061432.t1 MTR_5g012810 54.435 248 110 2 5 252 3 247 3.01e-78 236
MS.gene061432.t1 MTR_1g006590 51.029 243 114 3 5 247 3 240 5.95e-77 233
MS.gene061432.t1 MTR_2g060360 40.167 239 136 2 13 251 11 242 1.22e-57 184
MS.gene061432.t1 MTR_2g094270 39.583 240 120 7 21 240 40 274 2.11e-39 138
MS.gene061432.t1 MTR_7g101190 39.331 239 127 7 13 235 31 267 3.04e-36 130
MS.gene061432.t1 MTR_3g118010 37.555 229 129 5 21 238 37 262 2.25e-35 127
MS.gene061432.t1 MTR_4g059390 36.820 239 127 7 21 240 39 272 4.58e-32 119
MS.gene061432.t1 MTR_5g010150 35.656 244 137 7 10 239 41 278 6.70e-32 119
MS.gene061432.t1 MTR_8g098375 35.124 242 141 6 10 239 41 278 8.18e-32 118
MS.gene061432.t1 MTR_1g095070 41.436 181 94 4 69 238 25 204 3.70e-30 112
MS.gene061432.t1 MTR_5g063930 34.874 238 138 6 17 248 33 259 6.68e-30 112
MS.gene061432.t1 MTR_4g415300 37.021 235 123 8 21 239 56 281 1.31e-29 112
MS.gene061432.t1 MTR_5g082070 34.568 243 132 7 10 234 44 277 4.38e-28 108
MS.gene061432.t1 MTR_3g070210 33.195 241 138 6 10 234 44 277 5.80e-28 108
MS.gene061432.t1 MTR_2g094270 37.864 206 106 6 21 209 40 240 1.48e-27 107
MS.gene061432.t1 MTR_4g084880 33.333 246 156 3 9 251 20 260 7.13e-26 102
MS.gene061432.t1 MTR_3g008920 32.479 234 141 4 20 250 25 244 9.51e-23 94.0
MS.gene061432.t1 MTR_1g097840 33.333 228 132 7 25 246 78 291 2.32e-22 93.6
MS.gene061432.t1 MTR_5g079570 33.333 219 132 3 20 235 39 246 2.50e-22 93.2
MS.gene061432.t1 MTR_2g017620 32.906 234 144 6 20 250 23 246 2.95e-21 89.7
MS.gene061432.t1 MTR_2g017620 32.906 234 144 6 20 250 37 260 4.65e-21 89.7
MS.gene061432.t1 MTR_2g017620 34.857 175 110 3 78 251 9 180 1.31e-20 86.7
MS.gene061432.t1 MTR_2g017590 31.602 231 151 3 20 250 35 258 3.08e-20 87.4
MS.gene061432.t1 MTR_2g104940 29.956 227 151 4 25 251 84 302 1.03e-19 86.7
MS.gene061432.t1 MTR_1g095070 38.365 159 86 4 69 216 25 182 1.79e-19 83.6
MS.gene061432.t1 MTR_4g006730 29.817 218 145 3 25 242 79 288 1.88e-19 85.9
MS.gene061432.t1 MTR_2g017660 30.702 228 148 4 13 237 28 248 1.46e-18 82.8
MS.gene061432.t1 MTR_8g087710 30.303 231 154 3 20 250 38 261 1.51e-18 82.8
MS.gene061432.t1 MTR_7g010650 31.718 227 141 5 21 245 37 251 2.46e-18 82.4
MS.gene061432.t1 MTR_8g087720 29.741 232 156 2 20 251 37 261 1.91e-17 79.7
MS.gene061432.t1 MTR_3g070210 30.088 226 135 6 10 219 44 262 2.16e-17 79.7
MS.gene061432.t1 MTR_4g006730 29.187 209 140 3 34 242 1 201 3.38e-17 78.2
MS.gene061432.t1 MTR_4g006630 29.187 209 140 3 34 242 1 201 4.69e-17 77.8
MS.gene061432.t1 MTR_2g017610 32.701 211 129 5 20 227 37 237 1.25e-16 77.4
MS.gene061432.t1 MTR_4g059390 33.918 171 96 5 21 179 39 204 2.72e-16 75.5
MS.gene061432.t1 MTR_5g010150 32.203 177 108 4 10 179 41 212 2.81e-16 75.5
MS.gene061432.t1 MTR_2g017570 32.227 211 130 5 20 227 37 237 3.14e-16 76.6
MS.gene061432.t1 MTR_4g075590 31.414 191 105 6 69 239 82 266 1.76e-15 75.1
MS.gene061432.t1 MTR_1g070385 30.488 164 111 2 79 242 115 275 2.31e-15 75.9
MS.gene061432.t1 MTR_8g098375 30.857 175 113 3 10 179 41 212 5.16e-15 72.4
MS.gene061432.t1 MTR_4g075570 30.052 193 105 7 69 239 96 280 5.27e-15 73.6
MS.gene061432.t1 MTR_4g415300 33.929 168 94 5 21 179 56 215 1.61e-14 70.9
MS.gene061432.t1 MTR_3g070210 31.210 157 92 4 21 168 55 204 1.99e-12 65.1
MS.gene061432.t1 MTR_8g468730 34.000 100 47 2 139 238 1 81 2.63e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061432.t1 AT4G01470 84.127 252 40 0 1 252 1 252 2.00e-154 430
MS.gene061432.t1 AT2G36830 72.619 252 68 1 1 252 1 251 4.38e-128 363
MS.gene061432.t1 AT3G26520 70.751 253 73 1 1 252 1 253 8.54e-123 350
MS.gene061432.t1 AT3G16240 55.466 247 110 0 6 252 4 250 6.52e-93 274
MS.gene061432.t1 AT1G17810 55.078 256 103 2 9 252 12 267 5.17e-90 267
MS.gene061432.t1 AT1G73190 54.475 257 104 2 9 252 12 268 9.22e-90 266
MS.gene061432.t1 AT5G47450 54.656 247 110 1 5 251 3 247 1.83e-89 265
MS.gene061432.t1 AT4G17340 54.065 246 113 0 5 250 3 248 7.50e-81 243
MS.gene061432.t1 AT2G25810 51.406 249 116 3 3 251 1 244 3.57e-77 234
MS.gene061432.t1 AT3G47440 39.316 234 141 1 18 251 20 252 1.60e-52 171
MS.gene061432.t1 AT3G54820 36.555 238 135 6 13 235 30 266 2.31e-36 130
MS.gene061432.t1 AT3G53420 37.705 244 135 7 21 249 39 280 1.41e-34 125
MS.gene061432.t1 AT3G53420 37.705 244 135 7 21 249 39 280 1.41e-34 125
MS.gene061432.t1 AT2G37170 37.391 230 128 6 21 235 37 265 6.75e-34 124
MS.gene061432.t1 AT4G35100 37.118 229 130 5 21 238 38 263 7.70e-34 124
MS.gene061432.t1 AT4G35100 37.118 229 130 5 21 238 38 263 7.70e-34 124
MS.gene061432.t1 AT2G37170 36.777 242 136 7 21 247 80 319 1.12e-33 124
MS.gene061432.t1 AT2G16850 36.681 229 131 5 21 238 36 261 1.81e-33 122
MS.gene061432.t1 AT2G37180 36.957 230 129 6 21 235 37 265 4.52e-33 122
MS.gene061432.t1 AT5G60660 36.481 233 132 6 21 238 39 270 4.71e-32 119
MS.gene061432.t1 AT2G39010 36.087 230 131 5 21 235 38 266 1.24e-31 118
MS.gene061432.t1 AT4G00430 35.628 247 132 8 10 239 42 278 8.03e-30 113
MS.gene061432.t1 AT4G23400 35.776 232 130 7 21 239 53 278 2.13e-29 112
MS.gene061432.t1 AT2G45960 35.685 241 131 7 10 234 41 273 1.08e-28 110
MS.gene061432.t1 AT1G01620 34.914 232 125 7 21 235 52 274 3.90e-28 108
MS.gene061432.t1 AT3G61430 35.652 230 124 7 21 234 52 273 4.71e-28 108
MS.gene061432.t1 AT3G61430 35.652 230 124 7 21 234 52 273 4.71e-28 108
MS.gene061432.t1 AT1G01620 38.503 187 93 6 66 235 21 202 1.41e-26 103
MS.gene061432.t1 AT1G80760 30.380 237 147 5 21 252 80 303 1.15e-21 92.0
MS.gene061432.t1 AT5G37810 34.595 185 117 2 68 250 83 265 4.54e-21 90.1
MS.gene061432.t1 AT5G37820 34.054 185 118 2 68 250 83 265 1.10e-20 89.0
MS.gene061432.t1 AT5G37820 34.054 185 118 2 68 250 119 301 1.10e-20 89.4
MS.gene061432.t1 AT3G06100 29.091 220 149 4 18 237 43 255 1.69e-19 85.5
MS.gene061432.t1 AT2G45960 32.340 235 125 8 10 218 41 267 7.49e-19 84.3
MS.gene061432.t1 AT3G06100 31.492 181 122 2 57 237 29 207 1.71e-18 82.0
MS.gene061432.t1 AT4G10380 30.043 233 153 5 16 246 71 295 2.80e-18 82.8
MS.gene061432.t1 AT1G52180 52.703 74 35 0 143 216 51 124 3.32e-18 78.6
MS.gene061432.t1 AT2G45960 32.735 223 126 7 10 216 41 255 6.65e-18 81.3
MS.gene061432.t1 AT4G19030 28.452 239 155 5 20 250 54 284 9.18e-18 81.3
MS.gene061432.t1 AT4G18910 30.939 181 114 3 78 250 104 281 1.80e-17 80.1
MS.gene061432.t1 AT2G39010 36.025 161 84 6 21 168 38 192 5.72e-16 75.1
MS.gene061432.t1 AT1G31885 31.050 219 129 7 20 227 42 249 4.52e-15 73.9
MS.gene061432.t1 AT1G31885 34.444 180 99 5 68 234 29 202 1.14e-14 72.0
MS.gene061432.t1 AT3G06100 33.835 133 86 2 105 237 44 174 2.97e-14 69.7
MS.gene061432.t1 AT4G00430 33.136 169 94 5 10 168 42 201 1.60e-13 68.2

Find 60 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAATTGCTGCACCAATAAA+TGG 0.171426 7.1:+75382663 None:intergenic
ATGAATCCAGCTGTTTCTTT+TGG 0.180792 7.1:-75382738 MS.gene061432:CDS
ATTCCTATATTTCCTTTCTT+TGG 0.200086 7.1:+75382834 None:intergenic
TATTGGGTCGGCCCATTTAT+TGG 0.230799 7.1:-75382675 MS.gene061432:CDS
GGACTCATCATTGGGTCTAT+TGG 0.266787 7.1:-75382692 MS.gene061432:CDS
GAGATCCAATTGCAATTCTA+TGG 0.275529 7.1:+75384228 None:intergenic
ATGAGGCCAGCAGGTGTTGC+AGG 0.333483 7.1:+75383534 None:intergenic
GTCACATTTGGTGCCTTCAT+TGG 0.342791 7.1:-75383426 MS.gene061432:CDS
TTTGAAATTGTGATGACATT+TGG 0.356984 7.1:-75382891 MS.gene061432:CDS
ATCTATGATAATATCTTCAT+TGG 0.367388 7.1:-75382633 MS.gene061432:CDS
TTAGCTGGTGGAGCATTTGA+TGG 0.371173 7.1:-75382768 MS.gene061432:CDS
CTATTTGTTGCTGTTTCTGT+TGG 0.374459 7.1:-75383483 MS.gene061432:CDS
TATTGGATTGCACAGTTACT+TGG 0.387123 7.1:-75383372 MS.gene061432:CDS
TTGGGCCTGCTGTTGTTAGT+TGG 0.390659 7.1:-75382719 MS.gene061432:CDS
AGAATTGCAATTGGATCTCC+TGG 0.392229 7.1:-75384224 MS.gene061432:CDS
GATCCAAAGAAAGGAAATAT+AGG 0.396401 7.1:-75382837 MS.gene061432:CDS
GTTGGACATGGACTCATCAT+TGG 0.396977 7.1:-75382701 MS.gene061432:CDS
AAAAGAAACAGCTGGATTCA+TGG 0.403695 7.1:+75382740 None:intergenic
GACTCATCATTGGGTCTATT+GGG 0.404201 7.1:-75382691 MS.gene061432:CDS
ATTATTGCTCCAATTGCAAT+TGG 0.414156 7.1:-75382813 MS.gene061432:CDS
TCTGTTGGAGCAAACATATC+TGG 0.422782 7.1:-75383468 MS.gene061432:CDS
GCATCACTATCTCATGCATT+TGG 0.425431 7.1:-75383507 MS.gene061432:CDS
ATTGCAATTGGTGTTATTGT+TGG 0.426769 7.1:-75382801 MS.gene061432:CDS
ACAATAACACCAATTGCAAT+TGG 0.431013 7.1:+75382804 None:intergenic
GCAATCCATAGAATTGCAAT+TGG 0.439495 7.1:-75384233 MS.gene061432:CDS
ATTCTTCTTAAGTCTGCTAC+TGG 0.454286 7.1:-75383333 MS.gene061432:CDS
AATGGCCCTGCAACACCTGC+TGG 0.455508 7.1:-75383540 MS.gene061432:CDS
TGCTGGTCAAGGCTCTGGCA+TGG 0.455656 7.1:-75384132 MS.gene061432:CDS
TATCATCAGATATATCAGTA+TGG 0.456437 7.1:-75382926 MS.gene061432:CDS
CTGCTGTTGTTAGTTGGACA+TGG 0.469672 7.1:-75382713 MS.gene061432:CDS
ATTGGATCTCCTGGAGAGGC+TGG 0.474353 7.1:-75384215 MS.gene061432:CDS
TTGGACATGGACTCATCATT+GGG 0.484496 7.1:-75382700 MS.gene061432:CDS
CAATTGCTGCACCAATAAAT+GGG 0.486680 7.1:+75382664 None:intergenic
AATATCTTCATTGGTGATGA+TGG 0.487502 7.1:-75382624 MS.gene061432:CDS
GTGAACCCTGCAGTCACATT+TGG 0.490396 7.1:-75383438 MS.gene061432:CDS
AGGTGTTGCAGGGCCATTGT+TGG 0.508670 7.1:+75383545 None:intergenic
ACATTTGGTGCCTTCATTGG+AGG 0.511728 7.1:-75383423 MS.gene061432:CDS
AATGCAGCTCTAATTGCATC+AGG 0.511913 7.1:+75384188 None:intergenic
TCAGGTTGACCAGCCTCTCC+AGG 0.514269 7.1:+75384206 None:intergenic
GTTGGTGCAAATATCTTAGC+TGG 0.517744 7.1:-75382783 MS.gene061432:CDS
CTAGAAATCACTGTTTGAGA+GGG 0.520248 7.1:+75382593 None:intergenic
AAGGCACCAAATGTGACTGC+AGG 0.524218 7.1:+75383432 None:intergenic
TGTAATGTTTCCTCCAATGA+AGG 0.525031 7.1:+75383413 None:intergenic
AATTGTGATGACATTTGGAT+TGG 0.527517 7.1:-75382886 MS.gene061432:CDS
GCAGGCCCAAAAGAAACAGC+TGG 0.539419 7.1:+75382732 None:intergenic
CATGTCCAACTAACAACAGC+AGG 0.542428 7.1:+75382714 None:intergenic
GATGCAGCTATGAGGCCAGC+AGG 0.554925 7.1:+75383525 None:intergenic
TAAGTCTGCTACTGGTGGAA+TGG 0.556149 7.1:-75383325 MS.gene061432:intron
CATCATTGGGTCTATTGGGT+CGG 0.557396 7.1:-75382687 MS.gene061432:CDS
CTTCTTAAGTCTGCTACTGG+TGG 0.562385 7.1:-75383330 MS.gene061432:CDS
GCAGGCAAACTTACCAACAA+TGG 0.566114 7.1:-75383558 MS.gene061432:intron
GAGATAGTGATGCAGCTATG+AGG 0.568245 7.1:+75383517 None:intergenic
TGAGGCCAGCAGGTGTTGCA+GGG 0.569015 7.1:+75383535 None:intergenic
ACAGCAGTAGATCCAAAGAA+AGG 0.572893 7.1:-75382846 MS.gene061432:CDS
TCTAGAAATCACTGTTTGAG+AGG 0.582825 7.1:+75382592 None:intergenic
TAGAAATCACTGTTTGAGAG+GGG 0.619749 7.1:+75382594 None:intergenic
TGCAATTGGATCTCCTGGAG+AGG 0.626286 7.1:-75384219 MS.gene061432:CDS
GTTGGAGCAAACATATCTGG+TGG 0.627757 7.1:-75383465 MS.gene061432:CDS
AGGCACCAAATGTGACTGCA+GGG 0.650741 7.1:+75383433 None:intergenic
GGTGCAAATATCTTAGCTGG+TGG 0.673366 7.1:-75382780 MS.gene061432:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATAATAAAATTACTCAA+TGG - chr7.1:75382805-75382824 MS.gene061432:CDS 10.0%
!! ATACTTTCTTGAAATATTAT+CGG + chr7.1:75383626-75383645 None:intergenic 15.0%
!!! TCATTTTATCAAATTATTAG+CGG - chr7.1:75382937-75382956 MS.gene061432:CDS 15.0%
!!! TTTTGAGAAGTATTTTATAT+TGG - chr7.1:75383440-75383459 MS.gene061432:CDS 15.0%
!! AAATCAAATGTAGATATTGT+AGG - chr7.1:75383123-75383142 MS.gene061432:intron 20.0%
!! ATCTATGATAATATCTTCAT+TGG - chr7.1:75384196-75384215 MS.gene061432:CDS 20.0%
!! ATCTTATTAATGCATCAAAA+TGG + chr7.1:75383219-75383238 None:intergenic 20.0%
!! GTAGACATCTATAATAATTT+AGG - chr7.1:75383747-75383766 MS.gene061432:intron 20.0%
! AGAATAGATGAGTCAAATTA+AGG + chr7.1:75382770-75382789 None:intergenic 25.0%
! ATTAGACACAAACACAATAT+AGG - chr7.1:75383686-75383705 MS.gene061432:intron 25.0%
! ATTCCTATATTTCCTTTCTT+TGG + chr7.1:75383998-75384017 None:intergenic 25.0%
! CTAAACTAAACAATTCACTT+TGG - chr7.1:75383066-75383085 MS.gene061432:intron 25.0%
! TATCATCAGATATATCAGTA+TGG - chr7.1:75383903-75383922 MS.gene061432:intron 25.0%
! TATTAATGCATCAAAATGGA+TGG + chr7.1:75383215-75383234 None:intergenic 25.0%
!! AAGTGAATTGTTTAGTTTAG+AGG + chr7.1:75383066-75383085 None:intergenic 25.0%
!! TGTGTCAAGTATACTTTTAT+CGG + chr7.1:75383722-75383741 None:intergenic 25.0%
!! TTTGAAATTGTGATGACATT+TGG - chr7.1:75383938-75383957 MS.gene061432:intron 25.0%
AATTGTGATGACATTTGGAT+TGG - chr7.1:75383943-75383962 MS.gene061432:intron 30.0%
ACAATAACACCAATTGCAAT+TGG + chr7.1:75384028-75384047 None:intergenic 30.0%
AGAATGACAGATACAAACAT+TGG - chr7.1:75383578-75383597 MS.gene061432:intron 30.0%
AGCAAAAACAAAAATGAGCA+TGG + chr7.1:75382681-75382700 None:intergenic 30.0%
AGTGATATCAACTGCTAATT+AGG - chr7.1:75383100-75383119 MS.gene061432:intron 30.0%
ATTATTGCTCCAATTGCAAT+TGG - chr7.1:75384016-75384035 MS.gene061432:intron 30.0%
CTAGTAAAATGACTGATTGT+TGG - chr7.1:75383240-75383259 MS.gene061432:intron 30.0%
GATCCAAAGAAAGGAAATAT+AGG - chr7.1:75383992-75384011 MS.gene061432:intron 30.0%
TGCTTAAAGCTGAAGATTAA+TGG + chr7.1:75383533-75383552 None:intergenic 30.0%
TTTAGAGGAACATGATGTTT+AGG + chr7.1:75383051-75383070 None:intergenic 30.0%
! TTTTGCAAATTGAACATTGC+AGG - chr7.1:75383862-75383881 MS.gene061432:intron 30.0%
!! AATATCTTCATTGGTGATGA+TGG - chr7.1:75384205-75384224 MS.gene061432:CDS 30.0%
!! ATTGCAATTGGTGTTATTGT+TGG - chr7.1:75384028-75384047 MS.gene061432:intron 30.0%
!! TGACTGATTGTTGGTTATTT+TGG - chr7.1:75383249-75383268 MS.gene061432:intron 30.0%
!!! ATGCTCATTTTTGTTTTTGC+TGG - chr7.1:75382680-75382699 MS.gene061432:CDS 30.0%
!!! ATTTTTGTTTTTGCTGGTCA+AGG - chr7.1:75382686-75382705 MS.gene061432:CDS 30.0%
AAAAGAAACAGCTGGATTCA+TGG + chr7.1:75384092-75384111 None:intergenic 35.0%
ATTCTTCTTAAGTCTGCTAC+TGG - chr7.1:75383496-75383515 MS.gene061432:CDS 35.0%
CAATTGCTGCACCAATAAAT+GGG + chr7.1:75384168-75384187 None:intergenic 35.0%
CTAGAAATCACTGTTTGAGA+GGG + chr7.1:75384239-75384258 None:intergenic 35.0%
GAGATCCAATTGCAATTCTA+TGG + chr7.1:75382604-75382623 None:intergenic 35.0%
GCAATCCATAGAATTGCAAT+TGG - chr7.1:75382596-75382615 MS.gene061432:CDS 35.0%
TAGAAATCACTGTTTGAGAG+GGG + chr7.1:75384238-75384257 None:intergenic 35.0%
TATTGGATTGCACAGTTACT+TGG - chr7.1:75383457-75383476 MS.gene061432:CDS 35.0%
TGTAATGTTTCCTCCAATGA+AGG + chr7.1:75383419-75383438 None:intergenic 35.0%
!! CTATTTGTTGCTGTTTCTGT+TGG - chr7.1:75383346-75383365 MS.gene061432:CDS 35.0%
!!! ATGAATCCAGCTGTTTCTTT+TGG - chr7.1:75384091-75384110 MS.gene061432:intron 35.0%
!!! TGAATCCAGCTGTTTCTTTT+GGG - chr7.1:75384092-75384111 MS.gene061432:intron 35.0%
!!! TGATTGTTGGTTATTTTGGC+AGG - chr7.1:75383253-75383272 MS.gene061432:intron 35.0%
ACACCTACAATCTGGATTGT+CGG + chr7.1:75382845-75382864 None:intergenic 40.0%
ACAGCAGTAGATCCAAAGAA+AGG - chr7.1:75383983-75384002 MS.gene061432:intron 40.0%
AGAATTGCAATTGGATCTCC+TGG - chr7.1:75382605-75382624 MS.gene061432:CDS 40.0%
GACTCATCATTGGGTCTATT+GGG - chr7.1:75384138-75384157 MS.gene061432:CDS 40.0%
GAGGAACATGATGTTTAGGT+TGG + chr7.1:75383047-75383066 None:intergenic 40.0%
GCAATTGCTGCACCAATAAA+TGG + chr7.1:75384169-75384188 None:intergenic 40.0%
GCATCACTATCTCATGCATT+TGG - chr7.1:75383322-75383341 MS.gene061432:intron 40.0%
GTTGGTGCAAATATCTTAGC+TGG - chr7.1:75384046-75384065 MS.gene061432:intron 40.0%
TCTGTTGGAGCAAACATATC+TGG - chr7.1:75383361-75383380 MS.gene061432:CDS 40.0%
TGGATACGACACTGAAACAT+AGG - chr7.1:75383598-75383617 MS.gene061432:intron 40.0%
TTGGACATGGACTCATCATT+GGG - chr7.1:75384129-75384148 MS.gene061432:CDS 40.0%
! AATGCAGCTCTAATTGCATC+AGG + chr7.1:75382644-75382663 None:intergenic 40.0%
! TCGTGTCACTGCTTCATATA+TGG - chr7.1:75382993-75383012 MS.gene061432:intron 40.0%
!! ACTCTGAAACACCTACAATC+TGG + chr7.1:75382853-75382872 None:intergenic 40.0%
CATCATTGGGTCTATTGGGT+CGG - chr7.1:75384142-75384161 MS.gene061432:CDS 45.0%
CATGTCCAACTAACAACAGC+AGG + chr7.1:75384118-75384137 None:intergenic 45.0%
CTGCTGTTGTTAGTTGGACA+TGG - chr7.1:75384116-75384135 MS.gene061432:intron 45.0%
CTTCTTAAGTCTGCTACTGG+TGG - chr7.1:75383499-75383518 MS.gene061432:CDS 45.0%
GAACCGACAATCCAGATTGT+AGG - chr7.1:75382839-75382858 MS.gene061432:CDS 45.0%
GAGATAGTGATGCAGCTATG+AGG + chr7.1:75383315-75383334 None:intergenic 45.0%
GCAGGCAAACTTACCAACAA+TGG - chr7.1:75383271-75383290 MS.gene061432:intron 45.0%
GGACTCATCATTGGGTCTAT+TGG - chr7.1:75384137-75384156 MS.gene061432:CDS 45.0%
GGTGCAAATATCTTAGCTGG+TGG - chr7.1:75384049-75384068 MS.gene061432:intron 45.0%
GTTGGACATGGACTCATCAT+TGG - chr7.1:75384128-75384147 MS.gene061432:CDS 45.0%
GTTGGAGCAAACATATCTGG+TGG - chr7.1:75383364-75383383 MS.gene061432:CDS 45.0%
TAAGTCTGCTACTGGTGGAA+TGG - chr7.1:75383504-75383523 MS.gene061432:CDS 45.0%
TATTGGGTCGGCCCATTTAT+TGG - chr7.1:75384154-75384173 MS.gene061432:CDS 45.0%
! TTAGCTGGTGGAGCATTTGA+TGG - chr7.1:75384061-75384080 MS.gene061432:intron 45.0%
!! ACATTTGGTGCCTTCATTGG+AGG - chr7.1:75383406-75383425 MS.gene061432:CDS 45.0%
!! GTCACATTTGGTGCCTTCAT+TGG - chr7.1:75383403-75383422 MS.gene061432:CDS 45.0%
AGGCACCAAATGTGACTGCA+GGG + chr7.1:75383399-75383418 None:intergenic 50.0%
GTGAACCCTGCAGTCACATT+TGG - chr7.1:75383391-75383410 MS.gene061432:CDS 50.0%
TGCAATTGGATCTCCTGGAG+AGG - chr7.1:75382610-75382629 MS.gene061432:CDS 50.0%
TGCGAGTGTCTGACATGTGT+TGG + chr7.1:75383818-75383837 None:intergenic 50.0%
TTGGGCCTGCTGTTGTTAGT+TGG - chr7.1:75384110-75384129 MS.gene061432:intron 50.0%
! AAGGCACCAAATGTGACTGC+AGG + chr7.1:75383400-75383419 None:intergenic 50.0%
! GTTTTTGCTGGTCAAGGCTC+TGG - chr7.1:75382692-75382711 MS.gene061432:CDS 50.0%
ATTGGATCTCCTGGAGAGGC+TGG - chr7.1:75382614-75382633 MS.gene061432:CDS 55.0%
GCAGGCCCAAAAGAAACAGC+TGG + chr7.1:75384100-75384119 None:intergenic 55.0%
! AGGTGTTGCAGGGCCATTGT+TGG + chr7.1:75383287-75383306 None:intergenic 55.0%
AATGGCCCTGCAACACCTGC+TGG - chr7.1:75383289-75383308 MS.gene061432:intron 60.0%
GATGCAGCTATGAGGCCAGC+AGG + chr7.1:75383307-75383326 None:intergenic 60.0%
! ATGAGGCCAGCAGGTGTTGC+AGG + chr7.1:75383298-75383317 None:intergenic 60.0%
! TGAGGCCAGCAGGTGTTGCA+GGG + chr7.1:75383297-75383316 None:intergenic 60.0%
! TGCTGGTCAAGGCTCTGGCA+TGG - chr7.1:75382697-75382716 MS.gene061432:CDS 60.0%
!! TCAGGTTGACCAGCCTCTCC+AGG + chr7.1:75382626-75382645 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 75382593 75384258 75382593 ID=MS.gene061432
chr7.1 mRNA 75382593 75384258 75382593 ID=MS.gene061432.t1;Parent=MS.gene061432
chr7.1 exon 75384126 75384258 75384126 ID=MS.gene061432.t1.exon1;Parent=MS.gene061432.t1
chr7.1 CDS 75384126 75384258 75384126 ID=cds.MS.gene061432.t1;Parent=MS.gene061432.t1
chr7.1 exon 75383326 75383576 75383326 ID=MS.gene061432.t1.exon2;Parent=MS.gene061432.t1
chr7.1 CDS 75383326 75383576 75383326 ID=cds.MS.gene061432.t1;Parent=MS.gene061432.t1
chr7.1 exon 75382593 75382967 75382593 ID=MS.gene061432.t1.exon3;Parent=MS.gene061432.t1
chr7.1 CDS 75382593 75382967 75382593 ID=cds.MS.gene061432.t1;Parent=MS.gene061432.t1
Gene Sequence

>MS.gene061432

ATGGCAATCCATAGAATTGCAATTGGATCTCCTGGAGAGGCTGGTCAACCTGATGCAATTAGAGCTGCATTTGCTGAATTCTTTTCCATGCTCATTTTTGTTTTTGCTGGTCAAGGCTCTGGCATGGCTTACAGTGAGCACTTTACATATTCACTTAAAACTTGTGTTTTACAACCTTAATTTGACTCATCTATTCTATTCTATTTACATTTTTAATAATAAAATTACTCAATGGACATTTACGAAGAACCGACAATCCAGATTGTAGGTGTTTCAGAGTGTCTAACATGTGCTAGTGTTTGACACAAACATGCACTAATACATGCGTTTATATTGAATCACTTTCATTTTATCAAATTATTAGCGGTGTCTGAATCAGTGTCATGTGTCATGCAAGTGATCGTGTCACTGCTTCATATATGGACATGTGTCATCTTTTTATAGCTGTTTTCCAACCTAAACATCATGTTCCTCTAAACTAAACAATTCACTTTGGAATGTAAAATGAGTGATATCAACTGCTAATTAGGAAATCAAATGTAGATATTGTAGGCATGTCATGACATTTAATAGTTCATTGTAAAAACTTAATTCTTGCTACATAACATTTATGTTTTTTCCATCCATTTTGATGCATTAATAAGATGCTAGTAAAATGACTGATTGTTGGTTATTTTGGCAGGCAAACTTACCAACAATGGCCCTGCAACACCTGCTGGCCTCATAGCTGCATCACTATCTCATGCATTTGGACTATTTGTTGCTGTTTCTGTTGGAGCAAACATATCTGGTGGACATGTGAACCCTGCAGTCACATTTGGTGCCTTCATTGGAGGAAACATTACACTTTTGAGAAGTATTTTATATTGGATTGCACAGTTACTTGGTTCAGTTGTTGCTTGCATTCTTCTTAAGTCTGCTACTGGTGGAATGGTAACCATTAATCTTCAGCTTTAAGCACTATTATACTTATGAACTCTATGAAAGAATGACAGATACAAACATTGGATACGACACTGAAACATAGGCACCGATAATATTTCAAGAAAGTATAAGTGATCGTATGTGTCGTGTCGTGTCAAATATATTAGATATTAGACACAAACACAATATAGGCACATAGATGCCGATAAAAGTATACTTGACACATAAACGTAGACATCTATAATAATTTAGGAAAATAAAAGTAATTAAATGTAATCACATGTATCACTGTAAGATACCAACACATGTCAGACACTCGCATTCTACTCATGATTGAATTGATTTTTTTGCAAATTGAACATTGCAGGAGACATCAGCATTTGCAATATCATCAGATATATCAGTATGGAATGCACTTCTTTTTGAAATTGTGATGACATTTGGATTGGTATACACAGTTTATGCAACAGCAGTAGATCCAAAGAAAGGAAATATAGGAATTATTGCTCCAATTGCAATTGGTGTTATTGTTGGTGCAAATATCTTAGCTGGTGGAGCATTTGATGGAGCATCCATGAATCCAGCTGTTTCTTTTGGGCCTGCTGTTGTTAGTTGGACATGGACTCATCATTGGGTCTATTGGGTCGGCCCATTTATTGGTGCAGCAATTGCTGCTATTATCTATGATAATATCTTCATTGGTGATGATGGTCATGAACCCCTCTCAAACAGTGATTTCTAG
Protein sequence

>MS.gene061432.t1

MAIHRIAIGSPGEAGQPDAIRAAFAEFFSMLIFVFAGQGSGMAYSKLTNNGPATPAGLIAASLSHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRSILYWIAQLLGSVVACILLKSATGGMETSAFAISSDISVWNALLFEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGVIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTHHWVYWVGPFIGAAIAAIIYDNIFIGDDGHEPLSNSDF