Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061720.t1 | RHN63664.1 | 75 | 200 | 19 | 2 | 1 | 169 | 1 | 200 | 1.10E-73 | 286.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061720.t1 | Q8L557 | 68.6 | 105 | 33 | 0 | 49 | 153 | 65 | 169 | 7.7e-39 | 161.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061720.t1 | A0A396IHA6 | 75.0 | 200 | 19 | 2 | 1 | 169 | 1 | 200 | 8.1e-74 | 286.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049824 | MS.gene061720 | 0.820771 | 5.75E-53 | -1.69E-46 |
| MS.gene049825 | MS.gene061720 | 0.816992 | 4.15E-52 | -1.69E-46 |
| MS.gene049873 | MS.gene061720 | 0.826182 | 3.12E-54 | -1.69E-46 |
| MS.gene050303 | MS.gene061720 | 0.836268 | 1.03E-56 | -1.69E-46 |
| MS.gene050355 | MS.gene061720 | 0.800469 | 1.42E-48 | -1.69E-46 |
| MS.gene05134 | MS.gene061720 | 0.805443 | 1.33E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene061720 | 0.805315 | 1.42E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene061720 | 0.804127 | 2.51E-49 | -1.69E-46 |
| MS.gene053080 | MS.gene061720 | 0.809173 | 2.16E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene061720 | 0.83507 | 2.08E-56 | -1.69E-46 |
| MS.gene055778 | MS.gene061720 | 0.805161 | 1.53E-49 | -1.69E-46 |
| MS.gene055808 | MS.gene061720 | 0.823939 | 1.06E-53 | -1.69E-46 |
| MS.gene056091 | MS.gene061720 | 0.803978 | 2.69E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene061720 | 0.836338 | 9.92E-57 | -1.69E-46 |
| MS.gene057693 | MS.gene061720 | 0.814076 | 1.85E-51 | -1.69E-46 |
| MS.gene057705 | MS.gene061720 | 0.800546 | 1.37E-48 | -1.69E-46 |
| MS.gene05954 | MS.gene061720 | 0.855114 | 7.84E-62 | -1.69E-46 |
| MS.gene060429 | MS.gene061720 | 0.855815 | 4.90E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061720.t1 | MTR_0140s0050 | 71.667 | 180 | 20 | 3 | 1 | 162 | 1 | 167 | 1.72e-80 | 238 |
| MS.gene061720.t1 | MTR_3g435580 | 59.603 | 151 | 58 | 1 | 15 | 162 | 49 | 199 | 7.56e-58 | 182 |
| MS.gene061720.t1 | MTR_2g094530 | 45.745 | 94 | 49 | 1 | 3 | 96 | 45 | 136 | 4.20e-18 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061720.t1 | AT5G62440 | 61.864 | 118 | 45 | 0 | 37 | 154 | 53 | 170 | 3.00e-52 | 166 |
Find 42 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCATCAGGTCCTGTGAAAT+TGG | 0.210319 | 8.1:-16699205 | MS.gene061720:intron |
| GCAAGTGTTTCTTTCTCATT+AGG | 0.216772 | 8.1:-16697586 | MS.gene061720:CDS |
| ATGTCTACAGCGACGATTTC+TGG | 0.267784 | 8.1:+16699387 | None:intergenic |
| CAAAACTTTCGGCTCTTCTT+TGG | 0.271810 | 8.1:-16699178 | MS.gene061720:CDS |
| TGTTTCACTTGCATTGCTTC+TGG | 0.296516 | 8.1:+16697503 | None:intergenic |
| AACAGAGCATTGGGTGGTTC+TGG | 0.319267 | 8.1:-16697473 | MS.gene061720:CDS |
| CAAGTGTTTCTTTCTCATTA+GGG | 0.357081 | 8.1:-16697585 | MS.gene061720:CDS |
| GCCAGAGATGACGACGAAAA+AGG | 0.358142 | 8.1:-16699288 | MS.gene061720:intron |
| ATCTCTGGCACGCTTCTGAT+TGG | 0.363015 | 8.1:+16699302 | None:intergenic |
| CACTCACTGCACTCAATGTC+TGG | 0.374977 | 8.1:+16697385 | None:intergenic |
| AAATTGGGTTACAAAACTTT+CGG | 0.375837 | 8.1:-16699189 | MS.gene061720:CDS |
| ATGTAGGATGCTTGCGAACT+TGG | 0.378769 | 8.1:+16697615 | None:intergenic |
| GAATATGATCCACACATTTA+CGG | 0.416271 | 8.1:+16697534 | None:intergenic |
| CATCGAGGTGCTGGTGGAAG+AGG | 0.436207 | 8.1:-16697440 | MS.gene061720:CDS |
| CCATCAGGTCCTGTGAAATT+GGG | 0.448379 | 8.1:-16699204 | MS.gene061720:intron |
| CACTTGCATTGCTTCTGGCA+AGG | 0.456631 | 8.1:+16697508 | None:intergenic |
| CATGATGCAAACAGAGCATT+GGG | 0.462963 | 8.1:-16697482 | MS.gene061720:CDS |
| ACCTTGTTAACATTAAGATT+AGG | 0.475911 | 8.1:+16699114 | None:intergenic |
| ACTTGCATTGCTTCTGGCAA+GGG | 0.488485 | 8.1:+16697509 | None:intergenic |
| ACAGCGACGATTTCTGGTTC+CGG | 0.491379 | 8.1:+16699393 | None:intergenic |
| AAAAGAAAGCATCGAGGTGC+TGG | 0.509151 | 8.1:-16697449 | MS.gene061720:CDS |
| TTACTAGAATTGCTTATGAA+AGG | 0.517998 | 8.1:-16697683 | MS.gene061720:CDS |
| AATGACGGAAACCGCTGCAC+CGG | 0.523742 | 8.1:-16699412 | MS.gene061720:CDS |
| AAGTTCGCAAGCATCCTACA+TGG | 0.544290 | 8.1:-16697613 | MS.gene061720:CDS |
| ACATGATGCAAACAGAGCAT+TGG | 0.559557 | 8.1:-16697483 | MS.gene061720:CDS |
| GTCTTTCGCTTCTGAATCGA+CGG | 0.568423 | 8.1:+16699329 | None:intergenic |
| CGAGGTGCTGGTGGAAGAGG+AGG | 0.573526 | 8.1:-16697437 | MS.gene061720:CDS |
| TCCTAATCTTAATGTTAACA+AGG | 0.576772 | 8.1:-16699115 | MS.gene061720:intron |
| AGGAGGTACACATGGACGTG+GGG | 0.584945 | 8.1:-16697420 | MS.gene061720:CDS |
| TATTGAAAACGCTGAACTCA+CGG | 0.588016 | 8.1:-16699361 | MS.gene061720:CDS |
| GTGTTTCTTTCTCATTAGGG+AGG | 0.599803 | 8.1:-16697582 | MS.gene061720:CDS |
| GAGGAGGTACACATGGACGT+GGG | 0.602359 | 8.1:-16697421 | MS.gene061720:CDS |
| GATTTCTGGTTCCGGTGCAG+CGG | 0.603810 | 8.1:+16699401 | None:intergenic |
| AGAAATCGTCGCTGTAGACA+TGG | 0.605806 | 8.1:-16699385 | MS.gene061720:CDS |
| AGAAAGCATCGAGGTGCTGG+TGG | 0.622028 | 8.1:-16697446 | MS.gene061720:CDS |
| AGAGGAGGTACACATGGACG+TGG | 0.625090 | 8.1:-16697422 | MS.gene061720:CDS |
| GGAGGTACACATGGACGTGG+GGG | 0.649144 | 8.1:-16697419 | MS.gene061720:CDS |
| GGTGGAAGAGGAGGTACACA+TGG | 0.663515 | 8.1:-16697428 | MS.gene061720:CDS |
| TTTCGCTTCTGAATCGACGG+CGG | 0.677545 | 8.1:+16699332 | None:intergenic |
| GATGCAAACAGAGCATTGGG+TGG | 0.682793 | 8.1:-16697479 | MS.gene061720:CDS |
| TGAAAACGCTGAACTCACGG+AGG | 0.780192 | 8.1:-16699358 | MS.gene061720:CDS |
| TCTGGTAAAAGAAAGCATCG+AGG | 0.799067 | 8.1:-16697455 | MS.gene061720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAGAATATCTTATTA+CGG | - | chr8.1:16697847-16697866 | MS.gene061720:intron | 10.0% |
| !! | AAATCTCAATTTACAAATTA+GGG | + | chr8.1:16698957-16698976 | None:intergenic | 15.0% |
| !! | GTTAGTAACAAAAAAATATT+AGG | + | chr8.1:16699059-16699078 | None:intergenic | 15.0% |
| !!! | AATATTTTTTTGTTACTAAC+TGG | - | chr8.1:16699059-16699078 | MS.gene061720:intron | 15.0% |
| !!! | ATATTTTTTTGTTACTAACT+GGG | - | chr8.1:16699060-16699079 | MS.gene061720:intron | 15.0% |
| !! | CAACTAAAAAATTGTATTGA+AGG | - | chr8.1:16698473-16698492 | MS.gene061720:intron | 20.0% |
| !! | GAAATCTCAATTTACAAATT+AGG | + | chr8.1:16698958-16698977 | None:intergenic | 20.0% |
| !! | TAAAAAATTGTATTGAAGGA+GGG | - | chr8.1:16698477-16698496 | MS.gene061720:intron | 20.0% |
| ! | AAATTGGGTTACAAAACTTT+CGG | - | chr8.1:16697619-16697638 | MS.gene061720:CDS | 25.0% |
| ! | ACATCAAAATGTCAAATCAA+GGG | + | chr8.1:16697761-16697780 | None:intergenic | 25.0% |
| ! | ACCAACATCAATACAAAATA+AGG | + | chr8.1:16697876-16697895 | None:intergenic | 25.0% |
| ! | ACCTTGTTAACATTAAGATT+AGG | + | chr8.1:16697697-16697716 | None:intergenic | 25.0% |
| ! | ATAATGTTACTGATCTTTCA+AGG | - | chr8.1:16698067-16698086 | MS.gene061720:intron | 25.0% |
| ! | CCAACATCAATACAAAATAA+GGG | + | chr8.1:16697875-16697894 | None:intergenic | 25.0% |
| ! | CTAAAAAATTGTATTGAAGG+AGG | - | chr8.1:16698476-16698495 | MS.gene061720:intron | 25.0% |
| ! | GAAACGCTAAAAACAAAATA+AGG | + | chr8.1:16698708-16698727 | None:intergenic | 25.0% |
| ! | TCCTAATCTTAATGTTAACA+AGG | - | chr8.1:16697693-16697712 | MS.gene061720:CDS | 25.0% |
| ! | TTACTAGAATTGCTTATGAA+AGG | - | chr8.1:16699125-16699144 | MS.gene061720:CDS | 25.0% |
| !! | GTTTTGTACAATGAAGAAAA+AGG | + | chr8.1:16698438-16698457 | None:intergenic | 25.0% |
| !! | TTTGTATTGATGTTGGTTAT+GGG | - | chr8.1:16697879-16697898 | MS.gene061720:intron | 25.0% |
| !!! | TTTAGTAGTGTTGATGTAAA+GGG | - | chr8.1:16698012-16698031 | MS.gene061720:intron | 25.0% |
| !!! | TTTTGTATTGATGTTGGTTA+TGG | - | chr8.1:16697878-16697897 | MS.gene061720:intron | 25.0% |
| !!! | TTTTTTAGTTGCTTCAAATG+AGG | + | chr8.1:16698464-16698483 | None:intergenic | 25.0% |
| AGAGAATTTGAATATTCCAC+AGG | - | chr8.1:16698832-16698851 | MS.gene061720:intron | 30.0% | |
| ATTACAAAGCCTAAAATGAG+AGG | - | chr8.1:16698625-16698644 | MS.gene061720:intron | 30.0% | |
| CAAGTGTTTCTTTCTCATTA+GGG | - | chr8.1:16699223-16699242 | MS.gene061720:intron | 30.0% | |
| CACATCAAAATGTCAAATCA+AGG | + | chr8.1:16697762-16697781 | None:intergenic | 30.0% | |
| CACTTATATATCTACATGTC+AGG | - | chr8.1:16698901-16698920 | MS.gene061720:intron | 30.0% | |
| CTTTGTAATTTACCCAATCA+AGG | + | chr8.1:16698614-16698633 | None:intergenic | 30.0% | |
| GAATATGATCCACACATTTA+CGG | + | chr8.1:16699277-16699296 | None:intergenic | 30.0% | |
| GAGAATTTGAATATTCCACA+GGG | - | chr8.1:16698833-16698852 | MS.gene061720:intron | 30.0% | |
| TGCATATTTGTGAATTGGAT+GGG | - | chr8.1:16698037-16698056 | MS.gene061720:intron | 30.0% | |
| TTGCATATTTGTGAATTGGA+TGG | - | chr8.1:16698036-16698055 | MS.gene061720:intron | 30.0% | |
| ! | TTTCCACCAATCTTTTTATC+AGG | + | chr8.1:16699161-16699180 | None:intergenic | 30.0% |
| ! | TTTTTGTGATTGCCTTGATT+GGG | - | chr8.1:16698599-16698618 | MS.gene061720:intron | 30.0% |
| !! | CTTTAGTAGTGTTGATGTAA+AGG | - | chr8.1:16698011-16698030 | MS.gene061720:intron | 30.0% |
| !! | TGACTTTTGGTTGTTTTATG+TGG | - | chr8.1:16699084-16699103 | MS.gene061720:intron | 30.0% |
| !! | TTAGTAGTGTTGATGTAAAG+GGG | - | chr8.1:16698013-16698032 | MS.gene061720:intron | 30.0% |
| !!! | CCCTTATTTTGTATTGATGT+TGG | - | chr8.1:16697872-16697891 | MS.gene061720:intron | 30.0% |
| !!! | TTTTTTGTGATTGCCTTGAT+TGG | - | chr8.1:16698598-16698617 | MS.gene061720:intron | 30.0% |
| AAAGTCACAAACAAAGCCTT+GGG | + | chr8.1:16698335-16698354 | None:intergenic | 35.0% | |
| ACTCGCAATCAAAGTCTAAA+AGG | + | chr8.1:16698159-16698178 | None:intergenic | 35.0% | |
| ATCTACATGTCAGGATTGAA+CGG | - | chr8.1:16698910-16698929 | MS.gene061720:intron | 35.0% | |
| ATGGAAGAAATAGAGGAGAT+TGG | - | chr8.1:16698391-16698410 | MS.gene061720:intron | 35.0% | |
| ATTAATCCAACATCTGACCT+TGG | - | chr8.1:16698786-16698805 | MS.gene061720:intron | 35.0% | |
| GCAAGTGTTTCTTTCTCATT+AGG | - | chr8.1:16699222-16699241 | MS.gene061720:intron | 35.0% | |
| TATTGAAAACGCTGAACTCA+CGG | - | chr8.1:16697447-16697466 | MS.gene061720:CDS | 35.0% | |
| TGGAAGAAATAGAGGAGATT+GGG | - | chr8.1:16698392-16698411 | MS.gene061720:intron | 35.0% | |
| TTAGACTTTGATTGCGAGTT+TGG | - | chr8.1:16698160-16698179 | MS.gene061720:intron | 35.0% | |
| TTAGCGTTTCCATGAATTGA+GGG | - | chr8.1:16698718-16698737 | MS.gene061720:intron | 35.0% | |
| TTTAGCGTTTCCATGAATTG+AGG | - | chr8.1:16698717-16698736 | MS.gene061720:intron | 35.0% | |
| ! | AACAGTTTTCTTCATGCTTG+GGG | - | chr8.1:16697670-16697689 | MS.gene061720:CDS | 35.0% |
| ! | CAACAGTTTTCTTCATGCTT+GGG | - | chr8.1:16697669-16697688 | MS.gene061720:CDS | 35.0% |
| ! | GTTTTGTAACCCAATTTCAC+AGG | + | chr8.1:16697616-16697635 | None:intergenic | 35.0% |
| ! | TAAAATGAGAGGAAGCACAT+GGG | - | chr8.1:16698636-16698655 | MS.gene061720:intron | 35.0% |
| ! | TCAACAGTTTTCTTCATGCT+TGG | - | chr8.1:16697668-16697687 | MS.gene061720:CDS | 35.0% |
| ! | TTACTAACTGGGATGACTTT+TGG | - | chr8.1:16699071-16699090 | MS.gene061720:intron | 35.0% |
| ! | TTTCCATGAATTGAGGGTTT+TGG | - | chr8.1:16698724-16698743 | MS.gene061720:intron | 35.0% |
| !! | AAACACTTGCTTTTCCATGT+AGG | + | chr8.1:16699212-16699231 | None:intergenic | 35.0% |
| !!! | TTTTAGCTTCCGTAAATGTG+TGG | - | chr8.1:16699265-16699284 | MS.gene061720:intron | 35.0% |
| AAGAAATAGAGGAGATTGGG+AGG | - | chr8.1:16698395-16698414 | MS.gene061720:intron | 40.0% | |
| ACATGATGCAAACAGAGCAT+TGG | - | chr8.1:16699325-16699344 | MS.gene061720:CDS | 40.0% | |
| ACTTTGATTGCGAGTTTGGA+GGG | - | chr8.1:16698164-16698183 | MS.gene061720:intron | 40.0% | |
| AGAAATAGAGGAGATTGGGA+GGG | - | chr8.1:16698396-16698415 | MS.gene061720:intron | 40.0% | |
| AGGTGTTTCCAAGAAGCAAA+AGG | - | chr8.1:16697540-16697559 | MS.gene061720:CDS | 40.0% | |
| AGTCCAAAACCCTCAATTCA+TGG | + | chr8.1:16698730-16698749 | None:intergenic | 40.0% | |
| CAAAACTTTCGGCTCTTCTT+TGG | - | chr8.1:16697630-16697649 | MS.gene061720:CDS | 40.0% | |
| CAAAGTCACAAACAAAGCCT+TGG | + | chr8.1:16698336-16698355 | None:intergenic | 40.0% | |
| CCAGAGCCTGATAAAAAGAT+TGG | - | chr8.1:16699152-16699171 | MS.gene061720:CDS | 40.0% | |
| GAAGAAGAGATGAAACCATC+AGG | - | chr8.1:16697589-16697608 | MS.gene061720:CDS | 40.0% | |
| GAGATTCAGAGTTCAACTCT+TGG | - | chr8.1:16697978-16697997 | MS.gene061720:intron | 40.0% | |
| GAGCCTGATAAAAAGATTGG+TGG | - | chr8.1:16699155-16699174 | MS.gene061720:CDS | 40.0% | |
| GGGGTTGCATATTTGTGAAT+TGG | - | chr8.1:16698032-16698051 | MS.gene061720:intron | 40.0% | |
| GTGTTTCTTTCTCATTAGGG+AGG | - | chr8.1:16699226-16699245 | MS.gene061720:intron | 40.0% | |
| TCTACATGTCAGGATTGAAC+GGG | - | chr8.1:16698911-16698930 | MS.gene061720:intron | 40.0% | |
| TGTTTCACTTGCATTGCTTC+TGG | + | chr8.1:16699308-16699327 | None:intergenic | 40.0% | |
| TGTTTCCAAGAAGCAAAAGG+TGG | - | chr8.1:16697543-16697562 | MS.gene061720:CDS | 40.0% | |
| TTTCCGAACAAAACAGAGCA+CGG | + | chr8.1:16697917-16697936 | None:intergenic | 40.0% | |
| TTTGAAAAGGAAGGGGCAAA+TGG | - | chr8.1:16698372-16698391 | MS.gene061720:intron | 40.0% | |
| ! | CATGATGCAAACAGAGCATT+GGG | - | chr8.1:16699326-16699345 | MS.gene061720:CDS | 40.0% |
| ! | CATGTGCTTCCTCTCATTTT+AGG | + | chr8.1:16698637-16698656 | None:intergenic | 40.0% |
| ! | CCAATCTTTTTATCAGGCTC+TGG | + | chr8.1:16699155-16699174 | None:intergenic | 40.0% |
| ! | CTAAAATGAGAGGAAGCACA+TGG | - | chr8.1:16698635-16698654 | MS.gene061720:intron | 40.0% |
| ! | TTTGTGACTTTGGAGGGTAA+GGG | - | chr8.1:16698344-16698363 | MS.gene061720:intron | 40.0% |
| !! | AGAATCCCTCACTTTTATCG+GGG | + | chr8.1:16698253-16698272 | None:intergenic | 40.0% |
| !! | CAAGGCTTTGTTTGTGACTT+TGG | - | chr8.1:16698334-16698353 | MS.gene061720:intron | 40.0% |
| !! | GAGAATCCCTCACTTTTATC+GGG | + | chr8.1:16698254-16698273 | None:intergenic | 40.0% |
| !! | GCTTTGTTTGTGACTTTGGA+GGG | - | chr8.1:16698338-16698357 | MS.gene061720:intron | 40.0% |
| !! | GGAGAATCCCTCACTTTTAT+CGG | + | chr8.1:16698255-16698274 | None:intergenic | 40.0% |
| !! | GTATTGAAGGAGGGTTTTGA+CGG | - | chr8.1:16698486-16698505 | MS.gene061720:intron | 40.0% |
| !! | TATTGAAGGAGGGTTTTGAC+GGG | - | chr8.1:16698487-16698506 | MS.gene061720:intron | 40.0% |
| !! | TCTGGTAAAAGAAAGCATCG+AGG | - | chr8.1:16699353-16699372 | MS.gene061720:CDS | 40.0% |
| !!! | TTCAAGGCTGTGTTTTGAAG+AGG | - | chr8.1:16698083-16698102 | MS.gene061720:intron | 40.0% |
| AAACCATATCACAGTCCCTG+TGG | + | chr8.1:16698851-16698870 | None:intergenic | 45.0% | |
| AAGGGGCGAAAAGGAAACAT+AGG | + | chr8.1:16698276-16698295 | None:intergenic | 45.0% | |
| AAGTTCGCAAGCATCCTACA+TGG | - | chr8.1:16699195-16699214 | MS.gene061720:CDS | 45.0% | |
| ACCATCAGGTCCTGTGAAAT+TGG | - | chr8.1:16697603-16697622 | MS.gene061720:CDS | 45.0% | |
| ACTTGCATTGCTTCTGGCAA+GGG | + | chr8.1:16699302-16699321 | None:intergenic | 45.0% | |
| AGAAATCGTCGCTGTAGACA+TGG | - | chr8.1:16697423-16697442 | MS.gene061720:CDS | 45.0% | |
| AGACTCCCCGATAAAAGTGA+GGG | - | chr8.1:16698245-16698264 | MS.gene061720:intron | 45.0% | |
| ATGTAGGATGCTTGCGAACT+TGG | + | chr8.1:16699196-16699215 | None:intergenic | 45.0% | |
| ATGTCTACAGCGACGATTTC+TGG | + | chr8.1:16697424-16697443 | None:intergenic | 45.0% | |
| ATTCCACAGGGACTGTGATA+TGG | - | chr8.1:16698845-16698864 | MS.gene061720:intron | 45.0% | |
| CAAACAAAGCCTTGGGAGTT+AGG | + | chr8.1:16698328-16698347 | None:intergenic | 45.0% | |
| CCATCAGGTCCTGTGAAATT+GGG | - | chr8.1:16697604-16697623 | MS.gene061720:CDS | 45.0% | |
| GAAATAGAGGAGATTGGGAG+GGG | - | chr8.1:16698397-16698416 | MS.gene061720:intron | 45.0% | |
| GACTTTGATTGCGAGTTTGG+AGG | - | chr8.1:16698163-16698182 | MS.gene061720:intron | 45.0% | |
| GGGCATTAAGGGTAAAGGAT+AGG | - | chr8.1:16698199-16698218 | MS.gene061720:intron | 45.0% | |
| GGGGCAAATGGAAGAAATAG+AGG | - | chr8.1:16698384-16698403 | MS.gene061720:intron | 45.0% | |
| GTCTTTCGCTTCTGAATCGA+CGG | + | chr8.1:16697482-16697501 | None:intergenic | 45.0% | |
| ! | GTTTGTGACTTTGGAGGGTA+AGG | - | chr8.1:16698343-16698362 | MS.gene061720:intron | 45.0% |
| ! | TGCTTCCACCTTTTGCTTCT+TGG | + | chr8.1:16697551-16697570 | None:intergenic | 45.0% |
| ! | TTGTGACTTTGGAGGGTAAG+GGG | - | chr8.1:16698345-16698364 | MS.gene061720:intron | 45.0% |
| !! | AAAAGAAAGCATCGAGGTGC+TGG | - | chr8.1:16699359-16699378 | MS.gene061720:CDS | 45.0% |
| !! | AAAGCGAGATGAGGGCATTA+AGG | - | chr8.1:16698187-16698206 | MS.gene061720:intron | 45.0% |
| !! | AAGCGAGATGAGGGCATTAA+GGG | - | chr8.1:16698188-16698207 | MS.gene061720:intron | 45.0% |
| !! | ACCTTTTTCGTCGTCATCTC+TGG | + | chr8.1:16697524-16697543 | None:intergenic | 45.0% |
| !! | ACTCCGTGCTCTGTTTTGTT+CGG | - | chr8.1:16697911-16697930 | MS.gene061720:intron | 45.0% |
| !! | GATGAGGGCATTAAGGGTAA+AGG | - | chr8.1:16698194-16698213 | MS.gene061720:intron | 45.0% |
| !! | GGCTTTGTTTGTGACTTTGG+AGG | - | chr8.1:16698337-16698356 | MS.gene061720:intron | 45.0% |
| !! | TTTTGAAGAGGAAGGGGGTT+AGG | - | chr8.1:16698095-16698114 | MS.gene061720:intron | 45.0% |
| !!! | AGGCTGTGTTTTGAAGAGGA+AGG | - | chr8.1:16698087-16698106 | MS.gene061720:intron | 45.0% |
| !!! | CTGTGTTTTGAAGAGGAAGG+GGG | - | chr8.1:16698090-16698109 | MS.gene061720:intron | 45.0% |
| !!! | GCTGTGTTTTGAAGAGGAAG+GGG | - | chr8.1:16698089-16698108 | MS.gene061720:intron | 45.0% |
| !!! | GGCTGTGTTTTGAAGAGGAA+GGG | - | chr8.1:16698088-16698107 | MS.gene061720:intron | 45.0% |
| ACAAAGCCTTGGGAGTTAGG+AGG | + | chr8.1:16698325-16698344 | None:intergenic | 50.0% | |
| ATCTCTGGCACGCTTCTGAT+TGG | + | chr8.1:16697509-16697528 | None:intergenic | 50.0% | |
| CAAAGCCTTGGGAGTTAGGA+GGG | + | chr8.1:16698324-16698343 | None:intergenic | 50.0% | |
| CACTTGCATTGCTTCTGGCA+AGG | + | chr8.1:16699303-16699322 | None:intergenic | 50.0% | |
| CCCAATTTCACAGGACCTGA+TGG | + | chr8.1:16697607-16697626 | None:intergenic | 50.0% | |
| CTTGGGAGTTAGGAGGGAAA+GGG | + | chr8.1:16698318-16698337 | None:intergenic | 50.0% | |
| GAGACTCCCCGATAAAAGTG+AGG | - | chr8.1:16698244-16698263 | MS.gene061720:intron | 50.0% | |
| GCCAGAGATGACGACGAAAA+AGG | - | chr8.1:16697520-16697539 | MS.gene061720:CDS | 50.0% | |
| GGTGGAAGCAGAACTGAAAG+AGG | - | chr8.1:16697561-16697580 | MS.gene061720:CDS | 50.0% | |
| TAGGAGGGAAAGGGATGAGA+GGG | + | chr8.1:16698309-16698328 | None:intergenic | 50.0% | |
| TCCAACATCTGACCTTGGAC+TGG | - | chr8.1:16698791-16698810 | MS.gene061720:intron | 50.0% | |
| TCCAGTCCAAGGTCAGATGT+TGG | + | chr8.1:16698795-16698814 | None:intergenic | 50.0% | |
| TGAAAACGCTGAACTCACGG+AGG | - | chr8.1:16697450-16697469 | MS.gene061720:CDS | 50.0% | |
| TTAGGAGGGAAAGGGATGAG+AGG | + | chr8.1:16698310-16698329 | None:intergenic | 50.0% | |
| TTGGAGGGAAAGCGAGATGA+GGG | - | chr8.1:16698179-16698198 | MS.gene061720:intron | 50.0% | |
| TTTCGCTTCTGAATCGACGG+CGG | + | chr8.1:16697479-16697498 | None:intergenic | 50.0% | |
| TTTGGAGGAAAGGGGCGAAA+AGG | + | chr8.1:16698285-16698304 | None:intergenic | 50.0% | |
| TTTGGAGGGAAAGCGAGATG+AGG | - | chr8.1:16698178-16698197 | MS.gene061720:intron | 50.0% | |
| ! | AGGGGGGACTTTGAAAAGGA+AGG | - | chr8.1:16698363-16698382 | MS.gene061720:intron | 50.0% |
| ! | GGGGGACTTTGAAAAGGAAG+GGG | - | chr8.1:16698365-16698384 | MS.gene061720:intron | 50.0% |
| ! | GGGGGGACTTTGAAAAGGAA+GGG | - | chr8.1:16698364-16698383 | MS.gene061720:intron | 50.0% |
| ! | GGTAAGGGGGGACTTTGAAA+AGG | - | chr8.1:16698359-16698378 | MS.gene061720:intron | 50.0% |
| ! | TGTGACTTTGGAGGGTAAGG+GGG | - | chr8.1:16698346-16698365 | MS.gene061720:intron | 50.0% |
| ! | TTGGACTGGATTGAGCTGCA+GGG | - | chr8.1:16698805-16698824 | MS.gene061720:intron | 50.0% |
| !! | AACAGAGCATTGGGTGGTTC+TGG | - | chr8.1:16699335-16699354 | MS.gene061720:CDS | 50.0% |
| !! | ACAGCGACGATTTCTGGTTC+CGG | + | chr8.1:16697418-16697437 | None:intergenic | 50.0% |
| !! | ATGAGAGGGCTTTGGAGGAA+AGG | + | chr8.1:16698295-16698314 | None:intergenic | 50.0% |
| !! | GATGCAAACAGAGCATTGGG+TGG | - | chr8.1:16699329-16699348 | MS.gene061720:CDS | 50.0% |
| !! | TGAGAGGGCTTTGGAGGAAA+GGG | + | chr8.1:16698294-16698313 | None:intergenic | 50.0% |
| !!! | AGGAGGGTTTTGACGGGTTT+TGG | - | chr8.1:16698493-16698512 | MS.gene061720:intron | 50.0% |
| !!! | AGGGTTTTGACGGGTTTTGG+AGG | - | chr8.1:16698496-16698515 | MS.gene061720:intron | 50.0% |
| !!! | GGGTTTTGACGGGTTTTGGA+GGG | - | chr8.1:16698497-16698516 | MS.gene061720:intron | 50.0% |
| ACACATGGACGTGGGGGAAA+GGG | - | chr8.1:16699395-16699414 | MS.gene061720:CDS | 55.0% | |
| CCTTGGGAGTTAGGAGGGAA+AGG | + | chr8.1:16698319-16698338 | None:intergenic | 55.0% | |
| CCTTTCCCTCCTAACTCCCA+AGG | - | chr8.1:16698316-16698335 | MS.gene061720:intron | 55.0% | |
| CTGCAGCTCAATCCAGTCCA+AGG | + | chr8.1:16698806-16698825 | None:intergenic | 55.0% | |
| GGAAAGGGATGAGAGGGCTT+TGG | + | chr8.1:16698303-16698322 | None:intergenic | 55.0% | |
| TACACATGGACGTGGGGGAA+AGG | - | chr8.1:16699394-16699413 | MS.gene061720:CDS | 55.0% | |
| TGAAGAGGAAGGGGGTTAGG+AGG | - | chr8.1:16698098-16698117 | MS.gene061720:intron | 55.0% | |
| ! | AAGGGATGAGAGGGCTTTGG+AGG | + | chr8.1:16698300-16698319 | None:intergenic | 55.0% |
| ! | AGAGGAGGTACACATGGACG+TGG | - | chr8.1:16699386-16699405 | MS.gene061720:CDS | 55.0% |
| ! | AGGAGGTACACATGGACGTG+GGG | - | chr8.1:16699388-16699407 | MS.gene061720:CDS | 55.0% |
| ! | CTTGGACTGGATTGAGCTGC+AGG | - | chr8.1:16698804-16698823 | MS.gene061720:intron | 55.0% |
| ! | GAGGAGGTACACATGGACGT+GGG | - | chr8.1:16699387-16699406 | MS.gene061720:CDS | 55.0% |
| ! | GGTGGAAGAGGAGGTACACA+TGG | - | chr8.1:16699380-16699399 | MS.gene061720:CDS | 55.0% |
| ! | GTGACTTTGGAGGGTAAGGG+GGG | - | chr8.1:16698347-16698366 | MS.gene061720:intron | 55.0% |
| !! | AGAAAGCATCGAGGTGCTGG+TGG | - | chr8.1:16699362-16699381 | MS.gene061720:CDS | 55.0% |
| !! | GAGAGGGCTTTGGAGGAAAG+GGG | + | chr8.1:16698293-16698312 | None:intergenic | 55.0% |
| !! | GATTTCTGGTTCCGGTGCAG+CGG | + | chr8.1:16697410-16697429 | None:intergenic | 55.0% |
| AAGGGGGTTAGGAGGACAGG+CGG | - | chr8.1:16698106-16698125 | MS.gene061720:intron | 60.0% | |
| AGGAAGGGGGTTAGGAGGAC+AGG | - | chr8.1:16698103-16698122 | MS.gene061720:intron | 60.0% | |
| ! | GGAGGTACACATGGACGTGG+GGG | - | chr8.1:16699389-16699408 | MS.gene061720:CDS | 60.0% |
| !! | CATCGAGGTGCTGGTGGAAG+AGG | - | chr8.1:16699368-16699387 | MS.gene061720:CDS | 60.0% |
| !! | CGAGGTGCTGGTGGAAGAGG+AGG | - | chr8.1:16699371-16699390 | MS.gene061720:CDS | 65.0% |
| GAGGACAGGCGGCGAGCAGA+GGG | - | chr8.1:16698117-16698136 | MS.gene061720:intron | 70.0% | |
| GGAGGACAGGCGGCGAGCAG+AGG | - | chr8.1:16698116-16698135 | MS.gene061720:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 16697397 | 16699433 | 16697397 | ID=MS.gene061720 |
| chr8.1 | mRNA | 16697397 | 16699433 | 16697397 | ID=MS.gene061720.t1;Parent=MS.gene061720 |
| chr8.1 | exon | 16699289 | 16699433 | 16699289 | ID=MS.gene061720.t1.exon1;Parent=MS.gene061720.t1 |
| chr8.1 | CDS | 16699289 | 16699433 | 16699289 | ID=cds.MS.gene061720.t1;Parent=MS.gene061720.t1 |
| chr8.1 | exon | 16699116 | 16699219 | 16699116 | ID=MS.gene061720.t1.exon2;Parent=MS.gene061720.t1 |
| chr8.1 | CDS | 16699116 | 16699219 | 16699116 | ID=cds.MS.gene061720.t1;Parent=MS.gene061720.t1 |
| chr8.1 | exon | 16697397 | 16697720 | 16697397 | ID=MS.gene061720.t1.exon3;Parent=MS.gene061720.t1 |
| chr8.1 | CDS | 16697397 | 16697720 | 16697397 | ID=cds.MS.gene061720.t1;Parent=MS.gene061720.t1 |
| Gene Sequence |
| Protein sequence |
