Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062544.t1 | XP_003603098.1 | 96 | 323 | 12 | 1 | 1 | 323 | 1 | 322 | 2.80E-173 | 617.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062544.t1 | Q8GXG1 | 83.7 | 326 | 49 | 2 | 1 | 323 | 1 | 325 | 5.5e-154 | 545.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062544.t1 | G7J705 | 96.0 | 323 | 12 | 1 | 1 | 323 | 1 | 322 | 2.0e-173 | 617.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene038825 | MS.gene062544 | PPI |
| MS.gene063515 | MS.gene062544 | PPI |
| MS.gene044476 | MS.gene062544 | PPI |
| MS.gene063514 | MS.gene062544 | PPI |
| MS.gene033041 | MS.gene062544 | PPI |
| MS.gene044475 | MS.gene062544 | PPI |
| MS.gene03345 | MS.gene062544 | PPI |
| MS.gene033042 | MS.gene062544 | PPI |
| MS.gene038824 | MS.gene062544 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062544.t1 | MTR_3g102370 | 95.975 | 323 | 12 | 1 | 1 | 323 | 1 | 322 | 0.0 | 630 |
| MS.gene062544.t1 | MTR_1g094030 | 86.997 | 323 | 39 | 2 | 1 | 323 | 1 | 320 | 0.0 | 571 |
| MS.gene062544.t1 | MTR_1g018760 | 85.890 | 326 | 42 | 3 | 1 | 323 | 1 | 325 | 0.0 | 565 |
| MS.gene062544.t1 | MTR_4g109900 | 58.075 | 322 | 126 | 3 | 3 | 321 | 2 | 317 | 9.27e-125 | 360 |
| MS.gene062544.t1 | MTR_4g109920 | 57.143 | 322 | 130 | 4 | 3 | 321 | 2 | 318 | 3.76e-122 | 353 |
| MS.gene062544.t1 | MTR_8g031580 | 29.870 | 308 | 168 | 8 | 6 | 278 | 23 | 317 | 4.02e-27 | 109 |
| MS.gene062544.t1 | MTR_8g031580 | 29.870 | 308 | 168 | 8 | 6 | 278 | 23 | 317 | 1.12e-26 | 108 |
| MS.gene062544.t1 | MTR_3g008180 | 28.514 | 249 | 152 | 7 | 68 | 294 | 77 | 321 | 4.53e-16 | 78.2 |
| MS.gene062544.t1 | MTR_8g031580 | 27.706 | 231 | 118 | 7 | 86 | 279 | 1 | 219 | 3.06e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062544.t1 | AT3G16150 | 83.742 | 326 | 49 | 2 | 1 | 323 | 1 | 325 | 0.0 | 555 |
| MS.gene062544.t1 | AT5G08100 | 57.099 | 324 | 123 | 4 | 1 | 321 | 1 | 311 | 4.25e-122 | 353 |
| MS.gene062544.t1 | AT5G08100 | 56.790 | 243 | 91 | 2 | 81 | 321 | 1 | 231 | 2.99e-91 | 272 |
| MS.gene062544.t1 | AT4G00590 | 26.646 | 319 | 180 | 7 | 6 | 283 | 15 | 320 | 1.31e-21 | 94.7 |
| MS.gene062544.t1 | AT4G00590 | 25.890 | 309 | 180 | 7 | 6 | 283 | 15 | 305 | 7.17e-18 | 84.0 |
| MS.gene062544.t1 | AT5G61540 | 28.947 | 266 | 150 | 9 | 68 | 301 | 80 | 338 | 9.06e-18 | 83.2 |
| MS.gene062544.t1 | AT5G61540 | 29.167 | 240 | 131 | 9 | 94 | 301 | 4 | 236 | 1.18e-14 | 73.2 |
| MS.gene062544.t1 | AT5G61540 | 29.167 | 240 | 131 | 9 | 94 | 301 | 4 | 236 | 1.18e-14 | 73.2 |
Find 90 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAGCCACTTCACCCTTAT+TGG | 0.146841 | 8.1:-44295825 | None:intergenic |
| GTTCATGGAGGTTGGAATTT+TGG | 0.152801 | 8.1:+44295895 | MS.gene062544:CDS |
| TCAATTGTAATGGAATGTTT+AGG | 0.266625 | 8.1:+44295852 | MS.gene062544:CDS |
| CAATTGTAATGGAATGTTTA+GGG | 0.287602 | 8.1:+44295853 | MS.gene062544:CDS |
| AATAAGGGTGAAGTGGCTTA+TGG | 0.296657 | 8.1:+44295827 | MS.gene062544:CDS |
| GGTTGGGCCATTGCTGTTCA+TGG | 0.306024 | 8.1:+44294533 | MS.gene062544:CDS |
| CGTCTTGATGAAGGGTTTGC+TGG | 0.320904 | 8.1:+44295788 | MS.gene062544:CDS |
| TCTTATTGCTGTGTCCAATA+AGG | 0.346186 | 8.1:+44295811 | MS.gene062544:CDS |
| TGTGCTGCTGCAACCTCAAC+TGG | 0.368919 | 8.1:+44295563 | MS.gene062544:CDS |
| TGACGGTGTGTTGGAAGATT+AGG | 0.377061 | 8.1:-44294572 | None:intergenic |
| AAAGGAAGCTAATACAATAT+TGG | 0.379155 | 8.1:+44295304 | MS.gene062544:CDS |
| AGAAGATGTGGTGCTGTATC+TGG | 0.390803 | 8.1:+44295018 | MS.gene062544:CDS |
| TTTCAGCATACCAACATTAT+CGG | 0.395803 | 8.1:-44295276 | None:intergenic |
| AGGGGATGTGCAACTGAGAA+TGG | 0.403815 | 8.1:+44295872 | MS.gene062544:CDS |
| AGCAAAAGGAACGGTGGAAA+TGG | 0.416209 | 8.1:+44294969 | MS.gene062544:CDS |
| ACATTCGGTAAGAAGCTGTT+TGG | 0.418583 | 8.1:-44294603 | None:intergenic |
| GCTTATGGGTTCAATTGTAA+TGG | 0.420402 | 8.1:+44295842 | MS.gene062544:CDS |
| GTTATGGAGTACAAAGACTA+TGG | 0.421674 | 8.1:+44295731 | MS.gene062544:CDS |
| ATAAGGGTGAAGTGGCTTAT+GGG | 0.422425 | 8.1:+44295828 | MS.gene062544:CDS |
| ATTGCTGTTCATGGCGGCGC+AGG | 0.424510 | 8.1:+44294542 | MS.gene062544:CDS |
| CTTACCGAATGTCTCAATCT+TGG | 0.425909 | 8.1:+44294614 | MS.gene062544:CDS |
| CATTCTTACCTCGCCTTCTC+CGG | 0.431764 | 8.1:+44295099 | MS.gene062544:CDS |
| ACAAGACGAGCAAGAGAGAT+TGG | 0.433669 | 8.1:-44295060 | None:intergenic |
| CTTATTGCTGTGTCCAATAA+GGG | 0.458493 | 8.1:+44295812 | MS.gene062544:CDS |
| TTCAGCATACCAACATTATC+GGG | 0.458771 | 8.1:-44295275 | None:intergenic |
| GGATCTGCTCTGACAGCAAA+AGG | 0.463031 | 8.1:+44294955 | MS.gene062544:CDS |
| ATTAAGCATCGTCTTGATGA+AGG | 0.463221 | 8.1:+44295779 | MS.gene062544:CDS |
| AACAAAATGAGTGGTCGAAT+CGG | 0.464428 | 8.1:+44295596 | MS.gene062544:CDS |
| AGAAGAATTTGCTAGGGAAC+AGG | 0.465537 | 8.1:+44295125 | MS.gene062544:CDS |
| TGCAACTGAGAATGGGTTCA+TGG | 0.477091 | 8.1:+44295880 | MS.gene062544:CDS |
| ACCACACATCCGACGGTCTC+CGG | 0.480495 | 8.1:-44295521 | None:intergenic |
| TAATCTTCCAACACACCGTC+AGG | 0.481716 | 8.1:+44294574 | MS.gene062544:CDS |
| CTCTCTTGCTCGTCTTGTCA+TGG | 0.483008 | 8.1:+44295065 | MS.gene062544:CDS |
| ACGTGAAGTGGCTGCAGTTA+TGG | 0.491646 | 8.1:+44295715 | MS.gene062544:CDS |
| AAATTCTTCTGCACCGGAGA+AGG | 0.500532 | 8.1:-44295112 | None:intergenic |
| GAGAATGGGTTCATGGAGGT+TGG | 0.502391 | 8.1:+44295887 | MS.gene062544:CDS |
| ATCGGTGATTCACCTCTCAT+AGG | 0.503828 | 8.1:+44295614 | MS.gene062544:CDS |
| GTTCATTAGCCCTCCAGTTG+AGG | 0.507804 | 8.1:-44295576 | None:intergenic |
| GATAGTCCAGTGAAAATGAA+TGG | 0.507847 | 8.1:+44295476 | MS.gene062544:CDS |
| GATTCACCTCTCATAGGTGC+TGG | 0.508182 | 8.1:+44295620 | MS.gene062544:CDS |
| CCTAGCAAATTCTTCTGCAC+CGG | 0.509592 | 8.1:-44295118 | None:intergenic |
| GCTTCTTCCTGACGGTGTGT+TGG | 0.511337 | 8.1:-44294581 | None:intergenic |
| GTGTGTGGAGTTTCTTGCAC+TGG | 0.514229 | 8.1:+44295659 | MS.gene062544:CDS |
| GGGGATGTGCAACTGAGAAT+GGG | 0.515436 | 8.1:+44295873 | MS.gene062544:CDS |
| TACAGCACCACATCTTCTCT+TGG | 0.525365 | 8.1:-44295013 | None:intergenic |
| GGAGTTTCTTGCACTGGTGA+AGG | 0.536295 | 8.1:+44295665 | MS.gene062544:CDS |
| GGAAATGGAGGCTAGTATCA+TGG | 0.537266 | 8.1:+44294984 | MS.gene062544:CDS |
| GATACCAAGATTGAGACATT+CGG | 0.538052 | 8.1:-44294618 | None:intergenic |
| CCGGTGCAGAAGAATTTGCT+AGG | 0.539891 | 8.1:+44295118 | MS.gene062544:CDS |
| GACCGTCGGATGTGTGGTGG+TGG | 0.541481 | 8.1:+44295526 | MS.gene062544:CDS |
| GCTGTTTGGCTTCTTCCTGA+CGG | 0.552502 | 8.1:-44294589 | None:intergenic |
| TGGCACTCTTGCACGTGAAG+TGG | 0.556232 | 8.1:+44295703 | MS.gene062544:CDS |
| TTCATCACTCCCGATAATGT+TGG | 0.557667 | 8.1:+44295266 | MS.gene062544:CDS |
| AATTGTAATGGAATGTTTAG+GGG | 0.558475 | 8.1:+44295854 | MS.gene062544:CDS |
| GAGAAGGCGAGGTAAGAATG+AGG | 0.562126 | 8.1:-44295096 | None:intergenic |
| CCACGGCCAGAATTCAAAAG+TGG | 0.564240 | 8.1:-44294934 | None:intergenic |
| TGCGCCGCCATGAACAGCAA+TGG | 0.567462 | 8.1:-44294540 | None:intergenic |
| GTTTGATTATCGAATTCCAA+CGG | 0.581762 | 8.1:+44295436 | MS.gene062544:intron |
| GCCGGAGACCGTCGGATGTG+TGG | 0.582295 | 8.1:+44295520 | MS.gene062544:CDS |
| GAAGGTGAAGCTATCATTCG+TGG | 0.583136 | 8.1:+44295683 | MS.gene062544:CDS |
| CTATGGACTTCAACAAGCTG+TGG | 0.585085 | 8.1:+44295748 | MS.gene062544:CDS |
| TGTTCATGGCGGCGCAGGTG+TGG | 0.589949 | 8.1:+44294547 | MS.gene062544:CDS |
| GCCGATGAGCATTTACGCGC+CGG | 0.592527 | 8.1:+44295502 | MS.gene062544:CDS |
| AGAAGGCGAGGTAAGAATGA+GGG | 0.593655 | 8.1:-44295095 | None:intergenic |
| TTAAGCATCGTCTTGATGAA+GGG | 0.596066 | 8.1:+44295780 | MS.gene062544:CDS |
| TTGCTGTCAGAGCAGATCCA+CGG | 0.605965 | 8.1:-44294951 | None:intergenic |
| GCTGCTGCAACCTCAACTGG+AGG | 0.606206 | 8.1:+44295566 | MS.gene062544:CDS |
| TGCTCTGACAGCAAAAGGAA+CGG | 0.607232 | 8.1:+44294960 | MS.gene062544:CDS |
| TTTCTAGGGCGTGGAGACTG+AGG | 0.612061 | 8.1:+44295232 | MS.gene062544:intron |
| GTCCACCACCACACATCCGA+CGG | 0.619811 | 8.1:-44295528 | None:intergenic |
| AAAAGGAACGGTGGAAATGG+AGG | 0.622339 | 8.1:+44294972 | MS.gene062544:CDS |
| CGGTGCAGAAGAATTTGCTA+GGG | 0.622722 | 8.1:+44295119 | MS.gene062544:CDS |
| CTGCTGCAACCTCAACTGGA+GGG | 0.626492 | 8.1:+44295567 | MS.gene062544:CDS |
| GAAGGCGAGGTAAGAATGAG+GGG | 0.630197 | 8.1:-44295094 | None:intergenic |
| ATTTACGCGCCGGAGACCGT+CGG | 0.633728 | 8.1:+44295512 | MS.gene062544:CDS |
| ATGGAGGCTAGTATCATGGA+TGG | 0.635651 | 8.1:+44294988 | MS.gene062544:CDS |
| CACGGCCAGAATTCAAAAGT+GGG | 0.635763 | 8.1:-44294933 | None:intergenic |
| TCCGGCGCGTAAATGCTCAT+CGG | 0.640097 | 8.1:-44295503 | None:intergenic |
| TAAGTTCCAGCACCTATGAG+AGG | 0.650295 | 8.1:-44295626 | None:intergenic |
| TGTGTCCAATAAGGGTGAAG+TGG | 0.655230 | 8.1:+44295820 | MS.gene062544:CDS |
| CTTCTGCACCGGAGAAGGCG+AGG | 0.656386 | 8.1:-44295107 | None:intergenic |
| GGAGACCGTCGGATGTGTGG+TGG | 0.674288 | 8.1:+44295523 | MS.gene062544:CDS |
| GATGGTACCAAGAGAAGATG+TGG | 0.682088 | 8.1:+44295006 | MS.gene062544:CDS |
| TGGTATGCTGAAACTCGCAA+AGG | 0.682548 | 8.1:+44295286 | MS.gene062544:CDS |
| TGGGCCATTGCTGTTCATGG+CGG | 0.682587 | 8.1:+44294536 | MS.gene062544:CDS |
| ACTTATGCATGTGAAGTGTG+TGG | 0.696667 | 8.1:+44295644 | MS.gene062544:CDS |
| GGGCTAATGAACAAAATGAG+TGG | 0.699843 | 8.1:+44295587 | MS.gene062544:CDS |
| TCTGACAGCAAAAGGAACGG+TGG | 0.711989 | 8.1:+44294963 | MS.gene062544:CDS |
| TGTGTGGTGGTGGACAGTGA+AGG | 0.729603 | 8.1:+44295536 | MS.gene062544:CDS |
| AACTGAGAATGGGTTCATGG+AGG | 0.788867 | 8.1:+44295883 | MS.gene062544:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATATCATTAATAATCA+TGG | + | chr8.1:44294738-44294757 | MS.gene062544:intron | 10.0% |
| !! | GATTATTAATGATATAAATT+AGG | - | chr8.1:44294737-44294756 | None:intergenic | 10.0% |
| !! | TATATTTATAGATCAAAAAT+TGG | - | chr8.1:44295178-44295197 | None:intergenic | 10.0% |
| !! | TTTATATCATTAATAATCAT+GGG | + | chr8.1:44294739-44294758 | MS.gene062544:intron | 10.0% |
| !! | TTAATGATATAAATTAGGTT+AGG | - | chr8.1:44294732-44294751 | None:intergenic | 15.0% |
| !!! | CTTTTTAATCAAAAGATATT+TGG | + | chr8.1:44295201-44295220 | MS.gene062544:intron | 15.0% |
| !! | AAATTAGGTTAGGTTTATTA+CGG | - | chr8.1:44294722-44294741 | None:intergenic | 20.0% |
| ! | AAAGGAAGCTAATACAATAT+TGG | + | chr8.1:44295304-44295323 | MS.gene062544:CDS | 25.0% |
| ! | AACCCTAAAATCAACAAAAA+CGG | - | chr8.1:44294880-44294899 | None:intergenic | 25.0% |
| ! | TCACTTGTGTAATTAAAATG+TGG | + | chr8.1:44295363-44295382 | MS.gene062544:intron | 25.0% |
| ! | TCATTAATAATCATGGGATA+AGG | + | chr8.1:44294745-44294764 | MS.gene062544:intron | 25.0% |
| ! | TTACTAATGAATGTGTTTGA+TGG | + | chr8.1:44295402-44295421 | MS.gene062544:intron | 25.0% |
| !! | AATTGTAATGGAATGTTTAG+GGG | + | chr8.1:44295854-44295873 | MS.gene062544:CDS | 25.0% |
| !! | CAATTGTAATGGAATGTTTA+GGG | + | chr8.1:44295853-44295872 | MS.gene062544:CDS | 25.0% |
| !! | TCAATTGTAATGGAATGTTT+AGG | + | chr8.1:44295852-44295871 | MS.gene062544:CDS | 25.0% |
| !!! | ATTTGGTCATGTTTTTTCTA+GGG | + | chr8.1:44295218-44295237 | MS.gene062544:intron | 25.0% |
| !!! | TATTTGGTCATGTTTTTTCT+AGG | + | chr8.1:44295217-44295236 | MS.gene062544:intron | 25.0% |
| !!! | TTCCGTTTTTGTTGATTTTA+GGG | + | chr8.1:44294875-44294894 | MS.gene062544:intron | 25.0% |
| !!! | TTTCCGTTTTTGTTGATTTT+AGG | + | chr8.1:44294874-44294893 | MS.gene062544:intron | 25.0% |
| GTTTATTACGGAAAAGACAT+GGG | - | chr8.1:44294710-44294729 | None:intergenic | 30.0% | |
| GTTTGATTATCGAATTCCAA+CGG | + | chr8.1:44295436-44295455 | MS.gene062544:intron | 30.0% | |
| TAATGAATGTGTTTGATGGA+CGG | + | chr8.1:44295406-44295425 | MS.gene062544:intron | 30.0% | |
| TTTCAGCATACCAACATTAT+CGG | - | chr8.1:44295279-44295298 | None:intergenic | 30.0% | |
| ! | AAGAGAGATTGGATTTTTCA+CGG | - | chr8.1:44295052-44295071 | None:intergenic | 30.0% |
| !! | TTTAGGGTTCTTTTTGTGAT+AGG | + | chr8.1:44294891-44294910 | MS.gene062544:intron | 30.0% |
| AACAAAATGAGTGGTCGAAT+CGG | + | chr8.1:44295596-44295615 | MS.gene062544:CDS | 35.0% | |
| CTTATTGCTGTGTCCAATAA+GGG | + | chr8.1:44295812-44295831 | MS.gene062544:CDS | 35.0% | |
| GATACCAAGATTGAGACATT+CGG | - | chr8.1:44294621-44294640 | None:intergenic | 35.0% | |
| GATAGTCCAGTGAAAATGAA+TGG | + | chr8.1:44295476-44295495 | MS.gene062544:CDS | 35.0% | |
| GCTTATGGGTTCAATTGTAA+TGG | + | chr8.1:44295842-44295861 | MS.gene062544:CDS | 35.0% | |
| GGTTTATTACGGAAAAGACA+TGG | - | chr8.1:44294711-44294730 | None:intergenic | 35.0% | |
| GTTATGGAGTACAAAGACTA+TGG | + | chr8.1:44295731-44295750 | MS.gene062544:CDS | 35.0% | |
| TCTTATTGCTGTGTCCAATA+AGG | + | chr8.1:44295811-44295830 | MS.gene062544:CDS | 35.0% | |
| TTCAGCATACCAACATTATC+GGG | - | chr8.1:44295278-44295297 | None:intergenic | 35.0% | |
| ! | ATTAAGCATCGTCTTGATGA+AGG | + | chr8.1:44295779-44295798 | MS.gene062544:CDS | 35.0% |
| ! | TTAAGCATCGTCTTGATGAA+GGG | + | chr8.1:44295780-44295799 | MS.gene062544:CDS | 35.0% |
| AATAAGGGTGAAGTGGCTTA+TGG | + | chr8.1:44295827-44295846 | MS.gene062544:CDS | 40.0% | |
| ACATTCGGTAAGAAGCTGTT+TGG | - | chr8.1:44294606-44294625 | None:intergenic | 40.0% | |
| ACTTATGCATGTGAAGTGTG+TGG | + | chr8.1:44295644-44295663 | MS.gene062544:CDS | 40.0% | |
| ATAAGCCACTTCACCCTTAT+TGG | - | chr8.1:44295828-44295847 | None:intergenic | 40.0% | |
| ATAAGGGTGAAGTGGCTTAT+GGG | + | chr8.1:44295828-44295847 | MS.gene062544:CDS | 40.0% | |
| ATTCCAACGGAAAAATGTGC+TGG | + | chr8.1:44295449-44295468 | MS.gene062544:CDS | 40.0% | |
| CTTACCGAATGTCTCAATCT+TGG | + | chr8.1:44294614-44294633 | MS.gene062544:CDS | 40.0% | |
| GGGCTAATGAACAAAATGAG+TGG | + | chr8.1:44295587-44295606 | MS.gene062544:CDS | 40.0% | |
| TTCATCACTCCCGATAATGT+TGG | + | chr8.1:44295266-44295285 | MS.gene062544:CDS | 40.0% | |
| ! | AGAGATTGGATTTTTCACGG+TGG | - | chr8.1:44295049-44295068 | None:intergenic | 40.0% |
| ! | GTTCATGGAGGTTGGAATTT+TGG | + | chr8.1:44295895-44295914 | MS.gene062544:CDS | 40.0% |
| !! | ACAGACCCACTTTTGAATTC+TGG | + | chr8.1:44294928-44294947 | MS.gene062544:CDS | 40.0% |
| !! | AGAAGAATTTGCTAGGGAAC+AGG | + | chr8.1:44295125-44295144 | MS.gene062544:CDS | 40.0% |
| !! | GTGCAGAAAAAGCATTGGAT+CGG | - | chr8.1:44294652-44294671 | None:intergenic | 40.0% |
| AAAAGGAACGGTGGAAATGG+AGG | + | chr8.1:44294972-44294991 | MS.gene062544:CDS | 45.0% | |
| AAATTCTTCTGCACCGGAGA+AGG | - | chr8.1:44295115-44295134 | None:intergenic | 45.0% | |
| ACAAGACGAGCAAGAGAGAT+TGG | - | chr8.1:44295063-44295082 | None:intergenic | 45.0% | |
| AGAAGGCGAGGTAAGAATGA+GGG | - | chr8.1:44295098-44295117 | None:intergenic | 45.0% | |
| AGCAAAAGGAACGGTGGAAA+TGG | + | chr8.1:44294969-44294988 | MS.gene062544:CDS | 45.0% | |
| ATCGGTGATTCACCTCTCAT+AGG | + | chr8.1:44295614-44295633 | MS.gene062544:CDS | 45.0% | |
| ATGGAGGCTAGTATCATGGA+TGG | + | chr8.1:44294988-44295007 | MS.gene062544:CDS | 45.0% | |
| CACGGCCAGAATTCAAAAGT+GGG | - | chr8.1:44294936-44294955 | None:intergenic | 45.0% | |
| CCTAGCAAATTCTTCTGCAC+CGG | - | chr8.1:44295121-44295140 | None:intergenic | 45.0% | |
| CTATGGACTTCAACAAGCTG+TGG | + | chr8.1:44295748-44295767 | MS.gene062544:CDS | 45.0% | |
| GAAGGTGAAGCTATCATTCG+TGG | + | chr8.1:44295683-44295702 | MS.gene062544:CDS | 45.0% | |
| GATGGTACCAAGAGAAGATG+TGG | + | chr8.1:44295006-44295025 | MS.gene062544:CDS | 45.0% | |
| GGAAATGGAGGCTAGTATCA+TGG | + | chr8.1:44294984-44295003 | MS.gene062544:CDS | 45.0% | |
| TAAGTTCCAGCACCTATGAG+AGG | - | chr8.1:44295629-44295648 | None:intergenic | 45.0% | |
| TAATCTTCCAACACACCGTC+AGG | + | chr8.1:44294574-44294593 | MS.gene062544:CDS | 45.0% | |
| TACAGCACCACATCTTCTCT+TGG | - | chr8.1:44295016-44295035 | None:intergenic | 45.0% | |
| TGACGGTGTGTTGGAAGATT+AGG | - | chr8.1:44294575-44294594 | None:intergenic | 45.0% | |
| TGCTCTGACAGCAAAAGGAA+CGG | + | chr8.1:44294960-44294979 | MS.gene062544:CDS | 45.0% | |
| TGGTATGCTGAAACTCGCAA+AGG | + | chr8.1:44295286-44295305 | MS.gene062544:CDS | 45.0% | |
| TGTGTCCAATAAGGGTGAAG+TGG | + | chr8.1:44295820-44295839 | MS.gene062544:CDS | 45.0% | |
| ! | AACTGAGAATGGGTTCATGG+AGG | + | chr8.1:44295883-44295902 | MS.gene062544:CDS | 45.0% |
| ! | GGCAGACCATTCATTTTCAC+TGG | - | chr8.1:44295485-44295504 | None:intergenic | 45.0% |
| ! | GTCGAGTGCAGAAAAAGCAT+TGG | - | chr8.1:44294657-44294676 | None:intergenic | 45.0% |
| ! | GTTCCAGCACATTTTTCCGT+TGG | - | chr8.1:44295455-44295474 | None:intergenic | 45.0% |
| ! | TGAATGTGTTTGATGGACGG+TGG | + | chr8.1:44295409-44295428 | MS.gene062544:intron | 45.0% |
| ! | TGCAACTGAGAATGGGTTCA+TGG | + | chr8.1:44295880-44295899 | MS.gene062544:CDS | 45.0% |
| !! | AGAAGATGTGGTGCTGTATC+TGG | + | chr8.1:44295018-44295037 | MS.gene062544:CDS | 45.0% |
| !! | CGGTGCAGAAGAATTTGCTA+GGG | + | chr8.1:44295119-44295138 | MS.gene062544:CDS | 45.0% |
| !!! | GTCATGTTTTTTCTAGGGCG+TGG | + | chr8.1:44295223-44295242 | MS.gene062544:intron | 45.0% |
| !!! | AAATTATATTATTGTTATTA+TGG | - | chr8.1:44294823-44294842 | None:intergenic | 5.0% |
| !!! | AATAATATAATTTTTAAATC+GGG | + | chr8.1:44294830-44294849 | MS.gene062544:intron | 5.0% |
| !!! | CAATAATATAATTTTTAAAT+CGG | + | chr8.1:44294829-44294848 | MS.gene062544:intron | 5.0% |
| ACGTGAAGTGGCTGCAGTTA+TGG | + | chr8.1:44295715-44295734 | MS.gene062544:CDS | 50.0% | |
| AGGGGATGTGCAACTGAGAA+TGG | + | chr8.1:44295872-44295891 | MS.gene062544:CDS | 50.0% | |
| CATTCTTACCTCGCCTTCTC+CGG | + | chr8.1:44295099-44295118 | MS.gene062544:CDS | 50.0% | |
| CCACGGCCAGAATTCAAAAG+TGG | - | chr8.1:44294937-44294956 | None:intergenic | 50.0% | |
| CGTCTTGATGAAGGGTTTGC+TGG | + | chr8.1:44295788-44295807 | MS.gene062544:CDS | 50.0% | |
| CTCTCTTGCTCGTCTTGTCA+TGG | + | chr8.1:44295065-44295084 | MS.gene062544:CDS | 50.0% | |
| GAAGGCGAGGTAAGAATGAG+GGG | - | chr8.1:44295097-44295116 | None:intergenic | 50.0% | |
| GAGAAGGCGAGGTAAGAATG+AGG | - | chr8.1:44295099-44295118 | None:intergenic | 50.0% | |
| GATTCACCTCTCATAGGTGC+TGG | + | chr8.1:44295620-44295639 | MS.gene062544:CDS | 50.0% | |
| GGATCTGCTCTGACAGCAAA+AGG | + | chr8.1:44294955-44294974 | MS.gene062544:CDS | 50.0% | |
| GGGGATGTGCAACTGAGAAT+GGG | + | chr8.1:44295873-44295892 | MS.gene062544:CDS | 50.0% | |
| GTGTGTGGAGTTTCTTGCAC+TGG | + | chr8.1:44295659-44295678 | MS.gene062544:CDS | 50.0% | |
| GTTCATTAGCCCTCCAGTTG+AGG | - | chr8.1:44295579-44295598 | None:intergenic | 50.0% | |
| TCTGACAGCAAAAGGAACGG+TGG | + | chr8.1:44294963-44294982 | MS.gene062544:CDS | 50.0% | |
| TTGCTGTCAGAGCAGATCCA+CGG | - | chr8.1:44294954-44294973 | None:intergenic | 50.0% | |
| ! | CCGGTGCAGAAGAATTTGCT+AGG | + | chr8.1:44295118-44295137 | MS.gene062544:CDS | 50.0% |
| ! | GAGAATGGGTTCATGGAGGT+TGG | + | chr8.1:44295887-44295906 | MS.gene062544:CDS | 50.0% |
| ! | GCTGTTTGGCTTCTTCCTGA+CGG | - | chr8.1:44294592-44294611 | None:intergenic | 50.0% |
| ! | GGAGTTTCTTGCACTGGTGA+AGG | + | chr8.1:44295665-44295684 | MS.gene062544:CDS | 50.0% |
| !! | CCACTTTTGAATTCTGGCCG+TGG | + | chr8.1:44294934-44294953 | MS.gene062544:CDS | 50.0% |
| CTGCTGCAACCTCAACTGGA+GGG | + | chr8.1:44295567-44295586 | MS.gene062544:CDS | 55.0% | |
| GCTTCTTCCTGACGGTGTGT+TGG | - | chr8.1:44294584-44294603 | None:intergenic | 55.0% | |
| TCCGGCGCGTAAATGCTCAT+CGG | - | chr8.1:44295506-44295525 | None:intergenic | 55.0% | |
| TGGCACTCTTGCACGTGAAG+TGG | + | chr8.1:44295703-44295722 | MS.gene062544:CDS | 55.0% | |
| ! | GGTTGGGCCATTGCTGTTCA+TGG | + | chr8.1:44294533-44294552 | MS.gene062544:CDS | 55.0% |
| ! | TGGGCCATTGCTGTTCATGG+CGG | + | chr8.1:44294536-44294555 | MS.gene062544:CDS | 55.0% |
| ! | TGTGCTGCTGCAACCTCAAC+TGG | + | chr8.1:44295563-44295582 | MS.gene062544:CDS | 55.0% |
| !! | TGTGTGGTGGTGGACAGTGA+AGG | + | chr8.1:44295536-44295555 | MS.gene062544:CDS | 55.0% |
| !! | TTTCTAGGGCGTGGAGACTG+AGG | + | chr8.1:44295232-44295251 | MS.gene062544:intron | 55.0% |
| ACCACACATCCGACGGTCTC+CGG | - | chr8.1:44295524-44295543 | None:intergenic | 60.0% | |
| ATTTACGCGCCGGAGACCGT+CGG | + | chr8.1:44295512-44295531 | MS.gene062544:CDS | 60.0% | |
| GCCGATGAGCATTTACGCGC+CGG | + | chr8.1:44295502-44295521 | MS.gene062544:CDS | 60.0% | |
| GCTGCTGCAACCTCAACTGG+AGG | + | chr8.1:44295566-44295585 | MS.gene062544:CDS | 60.0% | |
| GTCCACCACCACACATCCGA+CGG | - | chr8.1:44295531-44295550 | None:intergenic | 60.0% | |
| TGCGCCGCCATGAACAGCAA+TGG | - | chr8.1:44294543-44294562 | None:intergenic | 60.0% | |
| ! | ATTGCTGTTCATGGCGGCGC+AGG | + | chr8.1:44294542-44294561 | MS.gene062544:CDS | 60.0% |
| CTTCTGCACCGGAGAAGGCG+AGG | - | chr8.1:44295110-44295129 | None:intergenic | 65.0% | |
| GACCGTCGGATGTGTGGTGG+TGG | + | chr8.1:44295526-44295545 | MS.gene062544:CDS | 65.0% | |
| GGAGACCGTCGGATGTGTGG+TGG | + | chr8.1:44295523-44295542 | MS.gene062544:CDS | 65.0% | |
| TGTTCATGGCGGCGCAGGTG+TGG | + | chr8.1:44294547-44294566 | MS.gene062544:CDS | 65.0% | |
| GCCGGAGACCGTCGGATGTG+TGG | + | chr8.1:44295520-44295539 | MS.gene062544:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 44294527 | 44295922 | 44294527 | ID=MS.gene062544 |
| chr8.1 | mRNA | 44294527 | 44295922 | 44294527 | ID=MS.gene062544.t1;Parent=MS.gene062544 |
| chr8.1 | exon | 44294527 | 44294691 | 44294527 | ID=MS.gene062544.t1.exon1;Parent=MS.gene062544.t1 |
| chr8.1 | CDS | 44294527 | 44294691 | 44294527 | ID=cds.MS.gene062544.t1;Parent=MS.gene062544.t1 |
| chr8.1 | exon | 44294913 | 44295146 | 44294913 | ID=MS.gene062544.t1.exon2;Parent=MS.gene062544.t1 |
| chr8.1 | CDS | 44294913 | 44295146 | 44294913 | ID=cds.MS.gene062544.t1;Parent=MS.gene062544.t1 |
| chr8.1 | exon | 44295239 | 44295325 | 44295239 | ID=MS.gene062544.t1.exon3;Parent=MS.gene062544.t1 |
| chr8.1 | CDS | 44295239 | 44295325 | 44295239 | ID=cds.MS.gene062544.t1;Parent=MS.gene062544.t1 |
| chr8.1 | exon | 44295437 | 44295922 | 44295437 | ID=MS.gene062544.t1.exon4;Parent=MS.gene062544.t1 |
| chr8.1 | CDS | 44295437 | 44295922 | 44295437 | ID=cds.MS.gene062544.t1;Parent=MS.gene062544.t1 |
| Gene Sequence |
| Protein sequence |
