Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062735.t1 | XP_013466038.1 | 98.3 | 524 | 9 | 0 | 1 | 524 | 1 | 524 | 8.20E-300 | 1038.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062735.t1 | K4BV52 | 65.2 | 538 | 169 | 3 | 1 | 524 | 1 | 534 | 6.5e-205 | 714.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062735.t1 | Q7X9B4 | 98.3 | 524 | 9 | 0 | 1 | 524 | 1 | 524 | 5.9e-300 | 1038.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050414 | MS.gene062735 | 0.819662 | 1.03E-52 | -1.69E-46 |
| MS.gene050669 | MS.gene062735 | 0.816223 | 6.18E-52 | -1.69E-46 |
| MS.gene051279 | MS.gene062735 | 0.814822 | 1.27E-51 | -1.69E-46 |
| MS.gene052016 | MS.gene062735 | 0.90657 | 1.29E-80 | -1.69E-46 |
| MS.gene052463 | MS.gene062735 | 0.804068 | 2.58E-49 | -1.69E-46 |
| MS.gene053143 | MS.gene062735 | 0.808843 | 2.54E-50 | -1.69E-46 |
| MS.gene053620 | MS.gene062735 | 0.858222 | 9.56E-63 | -1.69E-46 |
| MS.gene054178 | MS.gene062735 | 0.862854 | 3.77E-64 | -1.69E-46 |
| MS.gene054617 | MS.gene062735 | 0.857956 | 1.15E-62 | -1.69E-46 |
| MS.gene054824 | MS.gene062735 | 0.811852 | 5.69E-51 | -1.69E-46 |
| MS.gene054892 | MS.gene062735 | 0.82021 | 7.74E-53 | -1.69E-46 |
| MS.gene054893 | MS.gene062735 | 0.815032 | 1.14E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene062735 | 0.804347 | 2.26E-49 | -1.69E-46 |
| MS.gene058649 | MS.gene062735 | 0.821122 | 4.78E-53 | -1.69E-46 |
| MS.gene060522 | MS.gene062735 | 0.800325 | 1.52E-48 | -1.69E-46 |
| MS.gene061100 | MS.gene062735 | 0.800318 | 1.52E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062735.t1 | MTR_1g021652 | 98.282 | 524 | 9 | 0 | 1 | 524 | 1 | 524 | 0.0 | 1060 |
| MS.gene062735.t1 | MTR_3g111530 | 71.915 | 470 | 130 | 2 | 57 | 524 | 90 | 559 | 0.0 | 707 |
| MS.gene062735.t1 | MTR_4g068550 | 48.125 | 480 | 243 | 4 | 48 | 523 | 2 | 479 | 2.63e-167 | 483 |
| MS.gene062735.t1 | MTR_1g034320 | 50.418 | 478 | 229 | 6 | 52 | 523 | 8 | 483 | 6.16e-167 | 481 |
| MS.gene062735.t1 | MTR_1g034330 | 47.228 | 487 | 249 | 6 | 41 | 522 | 3 | 486 | 3.30e-162 | 470 |
| MS.gene062735.t1 | MTR_2g087890 | 39.787 | 470 | 269 | 5 | 56 | 522 | 21 | 479 | 8.36e-120 | 361 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062735.t1 | AT5G42650 | 60.077 | 521 | 204 | 3 | 4 | 524 | 2 | 518 | 0.0 | 649 |
| MS.gene062735.t1 | AT4G15440 | 40.217 | 368 | 216 | 4 | 137 | 501 | 4 | 370 | 8.63e-93 | 288 |
Find 119 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATTGATTTCAAGACTTT+TGG | 0.223131 | 1.4:+2748237 | MS.gene062735:CDS |
| TTCTTGAGCTGTTCATGTTT+TGG | 0.234640 | 1.4:-2747290 | None:intergenic |
| CCGATCCATTTCATCAAATT+AGG | 0.234831 | 1.4:-2747797 | None:intergenic |
| GAGAATCAACTTGCTGAAAA+TGG | 0.244874 | 1.4:+2747398 | MS.gene062735:CDS |
| CCACCGGTTCCATTACAATT+TGG | 0.257621 | 1.4:+2747962 | MS.gene062735:CDS |
| TACAATTTGGAAGAGCAAAA+AGG | 0.266309 | 1.4:+2747975 | MS.gene062735:CDS |
| CATGACGGCTACGTGATTTA+AGG | 0.269421 | 1.4:-2747328 | None:intergenic |
| CGTAAAATCCCTGGTGACTA+TGG | 0.271642 | 1.4:+2746969 | MS.gene062735:CDS |
| TCTGAAACTGAGGATCTTAT+AGG | 0.272458 | 1.4:-2746891 | None:intergenic |
| ACAGTTGGAGATTGAGATTC+TGG | 0.272740 | 1.4:-2748181 | None:intergenic |
| GTGATTGAAAATCATGAAAA+TGG | 0.293983 | 1.4:+2748004 | MS.gene062735:CDS |
| AAACATGTGCTTTGGTCTAA+TGG | 0.336037 | 1.4:+2748157 | MS.gene062735:CDS |
| CAAGTTGGAAATTCACCTTT+AGG | 0.336124 | 1.4:+2748298 | MS.gene062735:CDS |
| AAGAAAGGTGAATTGTTGTT+AGG | 0.339578 | 1.4:+2748037 | MS.gene062735:CDS |
| AAAAGAAATCATAAAGTCTT+TGG | 0.340810 | 1.4:-2747652 | None:intergenic |
| ATAGTCTAAACGGTCTTTGT+AGG | 0.357496 | 1.4:-2747009 | None:intergenic |
| GTTAGGTCCAGTTCTGAAAC+TGG | 0.360881 | 1.4:+2747556 | MS.gene062735:CDS |
| AGTCCAAGTTCGGTGTCAAC+AGG | 0.376332 | 1.4:-2747494 | None:intergenic |
| TCTTTCTTAATGAGCCGAAA+TGG | 0.384153 | 1.4:-2747626 | None:intergenic |
| AACGTAGTTGTACTCCTTGA+TGG | 0.385691 | 1.4:+2747140 | MS.gene062735:CDS |
| TTTGCTCTTCCAAATTGTAA+TGG | 0.388470 | 1.4:-2747971 | None:intergenic |
| TCAAGGAGTACAACTACGTT+AGG | 0.399517 | 1.4:-2747137 | None:intergenic |
| TTCTTGAACCGTGCTTTGTT+CGG | 0.407853 | 1.4:+2747464 | MS.gene062735:CDS |
| TTAGACTATTTCTACAATCA+AGG | 0.414085 | 1.4:+2747023 | MS.gene062735:CDS |
| CTATAACATGACTGAAACTC+TGG | 0.418932 | 1.4:-2747356 | None:intergenic |
| AACCCTGTTGACACCGAACT+TGG | 0.419339 | 1.4:+2747491 | MS.gene062735:CDS |
| CTCGAGGAAGCAGAGCGTTT+AGG | 0.429148 | 1.4:+2747695 | MS.gene062735:CDS |
| TTAGGATCTTTAGTAGCAAA+AGG | 0.430684 | 1.4:-2748067 | None:intergenic |
| AATTGTTGAAACATGTGCTT+TGG | 0.436664 | 1.4:+2748149 | MS.gene062735:CDS |
| TGGAAATTCACCTTTAGGTC+CGG | 0.438707 | 1.4:+2748303 | MS.gene062735:CDS |
| TTCGATGCGTCGAAGAGGAC+GGG | 0.442058 | 1.4:-2747173 | None:intergenic |
| CTAATTTGATGAAATGGATC+GGG | 0.442169 | 1.4:+2747798 | MS.gene062735:CDS |
| CTTTCTTAATGAGCCGAAAT+GGG | 0.448393 | 1.4:-2747625 | None:intergenic |
| GATAGATTTGTTGGTGATGA+AGG | 0.449657 | 1.4:+2748121 | MS.gene062735:CDS |
| ATCGGAAGCTTGGTTGTTTG+TGG | 0.457864 | 1.4:-2746945 | None:intergenic |
| TGGACCGTCAAGTCCAAGTT+CGG | 0.457945 | 1.4:-2747504 | None:intergenic |
| TTTGTTGCAGATAGATTTGT+TGG | 0.462474 | 1.4:+2748112 | MS.gene062735:CDS |
| GATTGTAGAAATAGTCTAAA+CGG | 0.463350 | 1.4:-2747019 | None:intergenic |
| TGCTGGCGGGGAGATTACTA+TGG | 0.465831 | 1.4:+2747880 | MS.gene062735:CDS |
| AAATTAGCGACGGAAATTAG+AGG | 0.465886 | 1.4:+2747845 | MS.gene062735:CDS |
| GGTAGGCCCAGTTTCAGAAC+TGG | 0.470888 | 1.4:-2747563 | None:intergenic |
| GGAGATTACTATGGCGGCCA+TGG | 0.473614 | 1.4:+2747889 | MS.gene062735:CDS |
| GACACCGAACTTGGACTTGA+CGG | 0.474937 | 1.4:+2747500 | MS.gene062735:CDS |
| CTTCCAAATTGTAATGGAAC+CGG | 0.475194 | 1.4:-2747965 | None:intergenic |
| GCGTTTAGGTGTTTCAAAAG+AGG | 0.480545 | 1.4:+2747709 | MS.gene062735:CDS |
| CCACCAGTGAGTTCTGTAGA+AGG | 0.484397 | 1.4:-2747233 | None:intergenic |
| TCTTTGTAGGGTTGGATGAA+AGG | 0.484515 | 1.4:-2746996 | None:intergenic |
| GATTCCTTTGAGATTCAAGT+TGG | 0.484812 | 1.4:+2748283 | MS.gene062735:CDS |
| TCGTGATAAGGTGGTGGAAG+AGG | 0.486006 | 1.4:-2746847 | None:intergenic |
| CTAAACGGTCTTTGTAGGGT+TGG | 0.489158 | 1.4:-2747004 | None:intergenic |
| GGTGGAGGAACGTCGTGATA+AGG | 0.495151 | 1.4:-2746859 | None:intergenic |
| GAATCTCAATCTCCAACTGT+TGG | 0.495729 | 1.4:+2748184 | MS.gene062735:CDS |
| CTTTGTAGGGTTGGATGAAA+GGG | 0.497717 | 1.4:-2746995 | None:intergenic |
| CCTAATTTGATGAAATGGAT+CGG | 0.498399 | 1.4:+2747797 | MS.gene062735:CDS |
| AATCTCAATCTCCAACTGTT+GGG | 0.502505 | 1.4:+2748185 | MS.gene062735:CDS |
| AGAGGAGCAATTAGATCTGC+TGG | 0.504448 | 1.4:+2747863 | MS.gene062735:CDS |
| TTCCGCACTAACGTTCCTCC+TGG | 0.506823 | 1.4:+2747095 | MS.gene062735:CDS |
| GGTTGTTTGTGGTTGAGAGA+TGG | 0.510021 | 1.4:-2746934 | None:intergenic |
| CATTGTTTATTCCCAACAGT+TGG | 0.511671 | 1.4:-2748196 | None:intergenic |
| GAATATGCCGTTGATGAAAT+CGG | 0.515909 | 1.4:+2747913 | MS.gene062735:CDS |
| ACTGGGCCTACCGAAGTTTG+TGG | 0.518134 | 1.4:+2747574 | MS.gene062735:CDS |
| TAGTCTAAACGGTCTTTGTA+GGG | 0.523147 | 1.4:-2747008 | None:intergenic |
| GGATCTTATAGGTGGAAGAA+AGG | 0.524920 | 1.4:-2746880 | None:intergenic |
| GAGCAATTAGATCTGCTGGC+GGG | 0.527113 | 1.4:+2747867 | MS.gene062735:CDS |
| GAGATGGAGACTTGGAAAGG+TGG | 0.530805 | 1.4:-2746918 | None:intergenic |
| GATAAAACCGATGTCTTCAC+AGG | 0.538925 | 1.4:+2747200 | MS.gene062735:CDS |
| AGCAATTAGATCTGCTGGCG+GGG | 0.539011 | 1.4:+2747868 | MS.gene062735:CDS |
| CAAGGAGTACAACTACGTTA+GGG | 0.540708 | 1.4:-2747136 | None:intergenic |
| AAAGGGATGCCATAGTCACC+AGG | 0.542937 | 1.4:-2746978 | None:intergenic |
| GTGGTTGAGAGATGGAGACT+TGG | 0.545394 | 1.4:-2746926 | None:intergenic |
| ATTTCCAACTTGAATCTCAA+AGG | 0.547715 | 1.4:-2748287 | None:intergenic |
| CGTGATAAGGTGGTGGAAGA+GGG | 0.548060 | 1.4:-2746846 | None:intergenic |
| TGCTGATAATAATGATCAAG+CGG | 0.549573 | 1.4:+2747433 | MS.gene062735:CDS |
| AGGGTAATAGCCGGACCTAA+AGG | 0.549887 | 1.4:-2748313 | None:intergenic |
| CTTCCGATCCGTAAAATCCC+TGG | 0.555994 | 1.4:+2746960 | MS.gene062735:CDS |
| TGTTTGAGGAGATTAGGAGA+AGG | 0.557408 | 1.4:-2746813 | None:intergenic |
| CTTCGATGCGTCGAAGAGGA+CGG | 0.557973 | 1.4:-2747174 | None:intergenic |
| TGATCTCTTTAGTGAGGTGA+GGG | 0.559767 | 1.4:-2748332 | None:intergenic |
| TCTTATAGGTGGAAGAAAGG+TGG | 0.561423 | 1.4:-2746877 | None:intergenic |
| TTGATCTCTTTAGTGAGGTG+AGG | 0.564316 | 1.4:-2748333 | None:intergenic |
| AGAAGGAGTTGAAAGAGTAG+AGG | 0.564504 | 1.4:-2746796 | None:intergenic |
| CATCAACGGCATATTCTCCA+TGG | 0.564805 | 1.4:-2747906 | None:intergenic |
| TAGTGCGGAAGATGGTTGAC+TGG | 0.567027 | 1.4:-2747082 | None:intergenic |
| CGATCTTCGATGCGTCGAAG+AGG | 0.569780 | 1.4:-2747178 | None:intergenic |
| AGGAACGTTAGTGCGGAAGA+TGG | 0.576272 | 1.4:-2747090 | None:intergenic |
| TTTAGGTGTTTCAAAAGAGG+AGG | 0.581669 | 1.4:+2747712 | MS.gene062735:CDS |
| GGATCGGGCGCGGTGGAGTG+AGG | 0.582337 | 1.4:+2747813 | MS.gene062735:CDS |
| ATAGAATCTTCCACAAACTT+CGG | 0.583947 | 1.4:-2747584 | None:intergenic |
| TCGATGCGTCGAAGAGGACG+GGG | 0.588579 | 1.4:-2747172 | None:intergenic |
| TATACCACCGATTTCATCAA+CGG | 0.592868 | 1.4:-2747920 | None:intergenic |
| CCAAATTGTAATGGAACCGG+TGG | 0.594525 | 1.4:-2747962 | None:intergenic |
| GTTGGGAATAAACAATGTGC+TGG | 0.598250 | 1.4:+2748202 | MS.gene062735:CDS |
| GGAACGTCGTGATAAGGTGG+TGG | 0.600776 | 1.4:-2746853 | None:intergenic |
| TATAGGTGGAAGAAAGGTGG+AGG | 0.604481 | 1.4:-2746874 | None:intergenic |
| TTCCTCGGGATTTGCTCTCG+AGG | 0.607265 | 1.4:+2747679 | MS.gene062735:CDS |
| AATCTTCCACAAACTTCGGT+AGG | 0.620192 | 1.4:-2747580 | None:intergenic |
| GTCCAAGTTCGGTGTCAACA+GGG | 0.625604 | 1.4:-2747493 | None:intergenic |
| ATGAAATGGATCGGGCGCGG+TGG | 0.626352 | 1.4:+2747806 | MS.gene062735:CDS |
| TTAGGTCCAGTTCTGAAACT+GGG | 0.627548 | 1.4:+2747557 | MS.gene062735:CDS |
| GGAGGAACGTCGTGATAAGG+TGG | 0.627902 | 1.4:-2746856 | None:intergenic |
| GACCAGGAGGAACGTTAGTG+CGG | 0.628753 | 1.4:-2747097 | None:intergenic |
| GGTTAACACCGAACAAAGCA+CGG | 0.629486 | 1.4:-2747472 | None:intergenic |
| GAAACTGAGGATCTTATAGG+TGG | 0.630333 | 1.4:-2746888 | None:intergenic |
| GAAGCTTGATCTCTTTAGTG+AGG | 0.631938 | 1.4:-2748338 | None:intergenic |
| TTGATGAAATGGATCGGGCG+CGG | 0.633244 | 1.4:+2747803 | MS.gene062735:CDS |
| ACACCTTCTACAGAACTCAC+TGG | 0.635223 | 1.4:+2747230 | MS.gene062735:CDS |
| AGTGAGGTGAGGGTAATAGC+CGG | 0.637608 | 1.4:-2748322 | None:intergenic |
| GAAACTCTGGAATAACATGA+CGG | 0.649547 | 1.4:-2747343 | None:intergenic |
| GTTGCATACAAAATTAGCGA+CGG | 0.661214 | 1.4:+2747835 | MS.gene062735:CDS |
| TGGCGGGGAGATTACTATGG+CGG | 0.671730 | 1.4:+2747883 | MS.gene062735:CDS |
| TGAGAGATGGAGACTTGGAA+AGG | 0.672847 | 1.4:-2746921 | None:intergenic |
| GGAGCAATTAGATCTGCTGG+CGG | 0.676095 | 1.4:+2747866 | MS.gene062735:CDS |
| CAAAAGTCTTGAAATCAATG+TGG | 0.688379 | 1.4:-2748236 | None:intergenic |
| AAGGGATGCCATAGTCACCA+GGG | 0.700881 | 1.4:-2746977 | None:intergenic |
| TTCCTCGAGAGCAAATCCCG+AGG | 0.708927 | 1.4:-2747681 | None:intergenic |
| CCTTCTACAGAACTCACTGG+TGG | 0.709735 | 1.4:+2747233 | MS.gene062735:CDS |
| TATGCCGTTGATGAAATCGG+TGG | 0.719714 | 1.4:+2747916 | MS.gene062735:CDS |
| GTATGTACCTGTGAAGACAT+CGG | 0.723042 | 1.4:-2747207 | None:intergenic |
| TGAGCTATGAAAGGACCAGG+AGG | 0.748813 | 1.4:-2747110 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAAATCATAAAGTCTT+TGG | - | chr1.4:2747655-2747674 | None:intergenic | 20.0% |
| !!! | AAATCATGAAAATGGTTTTT+TGG | + | chr1.4:2748012-2748031 | MS.gene062735:CDS | 20.0% |
| !!! | TTTTTCCTAATTTGATGAAA+TGG | + | chr1.4:2747792-2747811 | MS.gene062735:CDS | 20.0% |
| ! | GATTGTAGAAATAGTCTAAA+CGG | - | chr1.4:2747022-2747041 | None:intergenic | 25.0% |
| ! | GTGATTGAAAATCATGAAAA+TGG | + | chr1.4:2748004-2748023 | MS.gene062735:CDS | 25.0% |
| !!! | AAATGGGTTTTATTTCAGTT+AGG | + | chr1.4:2747539-2747558 | MS.gene062735:CDS | 25.0% |
| !!! | AATGGTTTTTTGGTTAAGAA+AGG | + | chr1.4:2748022-2748041 | MS.gene062735:CDS | 25.0% |
| !!! | TAGAGAGTTTTTTAATGCTT+TGG | + | chr1.4:2747376-2747395 | MS.gene062735:CDS | 25.0% |
| !!! | TTAGACTATTTCTACAATCA+AGG | + | chr1.4:2747023-2747042 | MS.gene062735:CDS | 25.0% |
| AATTGTTGAAACATGTGCTT+TGG | + | chr1.4:2748149-2748168 | MS.gene062735:CDS | 30.0% | |
| ACAATTTGGAAGAGCAAAAA+GGG | + | chr1.4:2747976-2747995 | MS.gene062735:CDS | 30.0% | |
| ATAGAATCTTCCACAAACTT+CGG | - | chr1.4:2747587-2747606 | None:intergenic | 30.0% | |
| ATTTCCAACTTGAATCTCAA+AGG | - | chr1.4:2748290-2748309 | None:intergenic | 30.0% | |
| CAAAAGTCTTGAAATCAATG+TGG | - | chr1.4:2748239-2748258 | None:intergenic | 30.0% | |
| CCTAATTTGATGAAATGGAT+CGG | + | chr1.4:2747797-2747816 | MS.gene062735:CDS | 30.0% | |
| CTAATTTGATGAAATGGATC+GGG | + | chr1.4:2747798-2747817 | MS.gene062735:CDS | 30.0% | |
| TACAATTTGGAAGAGCAAAA+AGG | + | chr1.4:2747975-2747994 | MS.gene062735:CDS | 30.0% | |
| TCCAAAAATGGTTCAGAAAT+GGG | + | chr1.4:2747523-2747542 | MS.gene062735:CDS | 30.0% | |
| TCTGCTCTATCAAAAATCTT+AGG | - | chr1.4:2748088-2748107 | None:intergenic | 30.0% | |
| TGCTGATAATAATGATCAAG+CGG | + | chr1.4:2747433-2747452 | MS.gene062735:CDS | 30.0% | |
| TTAGGATCTTTAGTAGCAAA+AGG | - | chr1.4:2748070-2748089 | None:intergenic | 30.0% | |
| TTTGCTCTTCCAAATTGTAA+TGG | - | chr1.4:2747974-2747993 | None:intergenic | 30.0% | |
| TTTGTTGCAGATAGATTTGT+TGG | + | chr1.4:2748112-2748131 | MS.gene062735:CDS | 30.0% | |
| ! | AAGAAAGGTGAATTGTTGTT+AGG | + | chr1.4:2748037-2748056 | MS.gene062735:CDS | 30.0% |
| ! | ATAATTTTCGTCTCCCATTT+CGG | + | chr1.4:2747612-2747631 | MS.gene062735:CDS | 30.0% |
| ! | TAAGATTTTTGATAGAGCAG+AGG | + | chr1.4:2748087-2748106 | MS.gene062735:CDS | 30.0% |
| ! | TGATTTCTTTTATGCTTCCT+CGG | + | chr1.4:2747664-2747683 | MS.gene062735:CDS | 30.0% |
| !! | TGGTTGTTGAACTTTTTCTT+AGG | + | chr1.4:2748257-2748276 | MS.gene062735:CDS | 30.0% |
| !!! | CACATTGATTTCAAGACTTT+TGG | + | chr1.4:2748237-2748256 | MS.gene062735:CDS | 30.0% |
| AAACATGTGCTTTGGTCTAA+TGG | + | chr1.4:2748157-2748176 | MS.gene062735:CDS | 35.0% | |
| AAATTAGCGACGGAAATTAG+AGG | + | chr1.4:2747845-2747864 | MS.gene062735:CDS | 35.0% | |
| AATCTCAATCTCCAACTGTT+GGG | + | chr1.4:2748185-2748204 | MS.gene062735:CDS | 35.0% | |
| ATAGTCTAAACGGTCTTTGT+AGG | - | chr1.4:2747012-2747031 | None:intergenic | 35.0% | |
| CATTGTTTATTCCCAACAGT+TGG | - | chr1.4:2748199-2748218 | None:intergenic | 35.0% | |
| CCGATCCATTTCATCAAATT+AGG | - | chr1.4:2747800-2747819 | None:intergenic | 35.0% | |
| CTATAACATGACTGAAACTC+TGG | - | chr1.4:2747359-2747378 | None:intergenic | 35.0% | |
| CTTTCTTAATGAGCCGAAAT+GGG | - | chr1.4:2747628-2747647 | None:intergenic | 35.0% | |
| GTCCAAAAATGGTTCAGAAA+TGG | + | chr1.4:2747522-2747541 | MS.gene062735:CDS | 35.0% | |
| GTTGCATACAAAATTAGCGA+CGG | + | chr1.4:2747835-2747854 | MS.gene062735:CDS | 35.0% | |
| TAGTCTAAACGGTCTTTGTA+GGG | - | chr1.4:2747011-2747030 | None:intergenic | 35.0% | |
| TCTTTCTTAATGAGCCGAAA+TGG | - | chr1.4:2747629-2747648 | None:intergenic | 35.0% | |
| TTTAGGTGTTTCAAAAGAGG+AGG | + | chr1.4:2747712-2747731 | MS.gene062735:CDS | 35.0% | |
| ! | ACCCATTTCTGAACCATTTT+TGG | - | chr1.4:2747527-2747546 | None:intergenic | 35.0% |
| ! | AGATGGTTGACTGGTATTTT+TGG | - | chr1.4:2747076-2747095 | None:intergenic | 35.0% |
| ! | CAAGTTGGAAATTCACCTTT+AGG | + | chr1.4:2748298-2748317 | MS.gene062735:CDS | 35.0% |
| ! | CTTCCAAATTGTAATGGAAC+CGG | - | chr1.4:2747968-2747987 | None:intergenic | 35.0% |
| ! | GAATATGCCGTTGATGAAAT+CGG | + | chr1.4:2747913-2747932 | MS.gene062735:CDS | 35.0% |
| ! | GATTTCTTTTATGCTTCCTC+GGG | + | chr1.4:2747665-2747684 | MS.gene062735:CDS | 35.0% |
| ! | TCTGAAACTGAGGATCTTAT+AGG | - | chr1.4:2746894-2746913 | None:intergenic | 35.0% |
| ! | TTCTTGAGCTGTTCATGTTT+TGG | - | chr1.4:2747293-2747312 | None:intergenic | 35.0% |
| !! | GAAACTCTGGAATAACATGA+CGG | - | chr1.4:2747346-2747365 | None:intergenic | 35.0% |
| !! | GAGAATCAACTTGCTGAAAA+TGG | + | chr1.4:2747398-2747417 | MS.gene062735:CDS | 35.0% |
| !! | GATAGATTTGTTGGTGATGA+AGG | + | chr1.4:2748121-2748140 | MS.gene062735:CDS | 35.0% |
| !! | GATTCCTTTGAGATTCAAGT+TGG | + | chr1.4:2748283-2748302 | MS.gene062735:CDS | 35.0% |
| !! | TATACCACCGATTTCATCAA+CGG | - | chr1.4:2747923-2747942 | None:intergenic | 35.0% |
| !!! | ACGTGTTTTAATTCGTTTGG+CGG | + | chr1.4:2747758-2747777 | MS.gene062735:CDS | 35.0% |
| !!! | GCAACGTGTTTTAATTCGTT+TGG | + | chr1.4:2747755-2747774 | MS.gene062735:CDS | 35.0% |
| !!! | TTAGGGTTTTGAGCTATGAA+AGG | - | chr1.4:2747122-2747141 | None:intergenic | 35.0% |
| !!! | TTTTGGTGTTTGAGGAGATT+AGG | - | chr1.4:2746822-2746841 | None:intergenic | 35.0% |
| AACGTAGTTGTACTCCTTGA+TGG | + | chr1.4:2747140-2747159 | MS.gene062735:CDS | 40.0% | |
| AATCTTCCACAAACTTCGGT+AGG | - | chr1.4:2747583-2747602 | None:intergenic | 40.0% | |
| ACAGTTGGAGATTGAGATTC+TGG | - | chr1.4:2748184-2748203 | None:intergenic | 40.0% | |
| AGAAGGAGTTGAAAGAGTAG+AGG | - | chr1.4:2746799-2746818 | None:intergenic | 40.0% | |
| CTTTGTAGGGTTGGATGAAA+GGG | - | chr1.4:2746998-2747017 | None:intergenic | 40.0% | |
| GAAACTGAGGATCTTATAGG+TGG | - | chr1.4:2746891-2746910 | None:intergenic | 40.0% | |
| GAAGCTTGATCTCTTTAGTG+AGG | - | chr1.4:2748341-2748360 | None:intergenic | 40.0% | |
| GAATCTCAATCTCCAACTGT+TGG | + | chr1.4:2748184-2748203 | MS.gene062735:CDS | 40.0% | |
| GATAAAACCGATGTCTTCAC+AGG | + | chr1.4:2747200-2747219 | MS.gene062735:CDS | 40.0% | |
| GCGTTTAGGTGTTTCAAAAG+AGG | + | chr1.4:2747709-2747728 | MS.gene062735:CDS | 40.0% | |
| GGATCTTATAGGTGGAAGAA+AGG | - | chr1.4:2746883-2746902 | None:intergenic | 40.0% | |
| GTATGTACCTGTGAAGACAT+CGG | - | chr1.4:2747210-2747229 | None:intergenic | 40.0% | |
| GTTGGGAATAAACAATGTGC+TGG | + | chr1.4:2748202-2748221 | MS.gene062735:CDS | 40.0% | |
| TCTTATAGGTGGAAGAAAGG+TGG | - | chr1.4:2746880-2746899 | None:intergenic | 40.0% | |
| TCTTTGTAGGGTTGGATGAA+AGG | - | chr1.4:2746999-2747018 | None:intergenic | 40.0% | |
| TGATCTCTTTAGTGAGGTGA+GGG | - | chr1.4:2748335-2748354 | None:intergenic | 40.0% | |
| TGGAAATTCACCTTTAGGTC+CGG | + | chr1.4:2748303-2748322 | MS.gene062735:CDS | 40.0% | |
| TGTTTGAGGAGATTAGGAGA+AGG | - | chr1.4:2746816-2746835 | None:intergenic | 40.0% | |
| TTGATCTCTTTAGTGAGGTG+AGG | - | chr1.4:2748336-2748355 | None:intergenic | 40.0% | |
| ! | CAAGGAGTACAACTACGTTA+GGG | - | chr1.4:2747139-2747158 | None:intergenic | 40.0% |
| ! | CATAGTCACCAGGGATTTTA+CGG | - | chr1.4:2746971-2746990 | None:intergenic | 40.0% |
| ! | TCAAGGAGTACAACTACGTT+AGG | - | chr1.4:2747140-2747159 | None:intergenic | 40.0% |
| ! | TTCTTGAACCGTGCTTTGTT+CGG | + | chr1.4:2747464-2747483 | MS.gene062735:CDS | 40.0% |
| ! | TTTTGAGCTATGAAAGGACC+AGG | - | chr1.4:2747116-2747135 | None:intergenic | 40.0% |
| !! | AGCTTTTCGTATTGATCCAC+CGG | + | chr1.4:2747946-2747965 | MS.gene062735:CDS | 40.0% |
| !! | TTAGGTCCAGTTCTGAAACT+GGG | + | chr1.4:2747557-2747576 | MS.gene062735:CDS | 40.0% |
| !!! | AGGGTCTTTTTTGGTGTTTG+AGG | - | chr1.4:2746830-2746849 | None:intergenic | 40.0% |
| !!! | AGGTGGTTTTTCTGAAACTG+AGG | - | chr1.4:2746904-2746923 | None:intergenic | 40.0% |
| !!! | CGTGTTTTAATTCGTTTGGC+GGG | + | chr1.4:2747759-2747778 | MS.gene062735:CDS | 40.0% |
| !!! | GAGCTGTTCATGTTTTGGTT+CGG | - | chr1.4:2747288-2747307 | None:intergenic | 40.0% |
| !!! | TGTTCATGTTTTGGTTCGGA+GGG | - | chr1.4:2747284-2747303 | None:intergenic | 40.0% |
| ACACCTTCTACAGAACTCAC+TGG | + | chr1.4:2747230-2747249 | MS.gene062735:CDS | 45.0% | |
| AGAGGAGCAATTAGATCTGC+TGG | + | chr1.4:2747863-2747882 | MS.gene062735:CDS | 45.0% | |
| ATCGGAAGCTTGGTTGTTTG+TGG | - | chr1.4:2746948-2746967 | None:intergenic | 45.0% | |
| CATCAACGGCATATTCTCCA+TGG | - | chr1.4:2747909-2747928 | None:intergenic | 45.0% | |
| CATGACGGCTACGTGATTTA+AGG | - | chr1.4:2747331-2747350 | None:intergenic | 45.0% | |
| CGTAAAATCCCTGGTGACTA+TGG | + | chr1.4:2746969-2746988 | MS.gene062735:CDS | 45.0% | |
| CTAAACGGTCTTTGTAGGGT+TGG | - | chr1.4:2747007-2747026 | None:intergenic | 45.0% | |
| GGTTAACACCGAACAAAGCA+CGG | - | chr1.4:2747475-2747494 | None:intergenic | 45.0% | |
| GGTTGTTTGTGGTTGAGAGA+TGG | - | chr1.4:2746937-2746956 | None:intergenic | 45.0% | |
| TATAGGTGGAAGAAAGGTGG+AGG | - | chr1.4:2746877-2746896 | None:intergenic | 45.0% | |
| TGAGAGATGGAGACTTGGAA+AGG | - | chr1.4:2746924-2746943 | None:intergenic | 45.0% | |
| TGGAAGAGCAAAAAGGGACA+TGG | + | chr1.4:2747982-2748001 | MS.gene062735:CDS | 45.0% | |
| TGGACTTGACGGTCCAAAAA+TGG | + | chr1.4:2747511-2747530 | MS.gene062735:CDS | 45.0% | |
| ! | CCAAATTGTAATGGAACCGG+TGG | - | chr1.4:2747965-2747984 | None:intergenic | 45.0% |
| ! | GATTTTACGGATCGGAAGCT+TGG | - | chr1.4:2746958-2746977 | None:intergenic | 45.0% |
| ! | TATGCCGTTGATGAAATCGG+TGG | + | chr1.4:2747916-2747935 | MS.gene062735:CDS | 45.0% |
| ! | TCACCAGGGATTTTACGGAT+CGG | - | chr1.4:2746966-2746985 | None:intergenic | 45.0% |
| !! | CCACCGGTTCCATTACAATT+TGG | + | chr1.4:2747962-2747981 | MS.gene062735:CDS | 45.0% |
| !! | GTTAGGTCCAGTTCTGAAAC+TGG | + | chr1.4:2747556-2747575 | MS.gene062735:CDS | 45.0% |
| !!! | CTGTTCATGTTTTGGTTCGG+AGG | - | chr1.4:2747285-2747304 | None:intergenic | 45.0% |
| !!! | TGGTGGAAGAGGGTCTTTTT+TGG | - | chr1.4:2746839-2746858 | None:intergenic | 45.0% |
| AAAGGGATGCCATAGTCACC+AGG | - | chr1.4:2746981-2747000 | None:intergenic | 50.0% | |
| AACCCTGTTGACACCGAACT+TGG | + | chr1.4:2747491-2747510 | MS.gene062735:CDS | 50.0% | |
| AAGGGATGCCATAGTCACCA+GGG | - | chr1.4:2746980-2746999 | None:intergenic | 50.0% | |
| AGCAATTAGATCTGCTGGCG+GGG | + | chr1.4:2747868-2747887 | MS.gene062735:CDS | 50.0% | |
| AGGAACGTTAGTGCGGAAGA+TGG | - | chr1.4:2747093-2747112 | None:intergenic | 50.0% | |
| AGGGTAATAGCCGGACCTAA+AGG | - | chr1.4:2748316-2748335 | None:intergenic | 50.0% | |
| AGTGAGGTGAGGGTAATAGC+CGG | - | chr1.4:2748325-2748344 | None:intergenic | 50.0% | |
| CCACCAGTGAGTTCTGTAGA+AGG | - | chr1.4:2747236-2747255 | None:intergenic | 50.0% | |
| CCTTCTACAGAACTCACTGG+TGG | + | chr1.4:2747233-2747252 | MS.gene062735:CDS | 50.0% | |
| CTTCCGATCCGTAAAATCCC+TGG | + | chr1.4:2746960-2746979 | MS.gene062735:CDS | 50.0% | |
| GACACCGAACTTGGACTTGA+CGG | + | chr1.4:2747500-2747519 | MS.gene062735:CDS | 50.0% | |
| GAGATGGAGACTTGGAAAGG+TGG | - | chr1.4:2746921-2746940 | None:intergenic | 50.0% | |
| GAGCAATTAGATCTGCTGGC+GGG | + | chr1.4:2747867-2747886 | MS.gene062735:CDS | 50.0% | |
| GGAGCAATTAGATCTGCTGG+CGG | + | chr1.4:2747866-2747885 | MS.gene062735:CDS | 50.0% | |
| GTGGTTGAGAGATGGAGACT+TGG | - | chr1.4:2746929-2746948 | None:intergenic | 50.0% | |
| TAGTGCGGAAGATGGTTGAC+TGG | - | chr1.4:2747085-2747104 | None:intergenic | 50.0% | |
| TGAGCTATGAAAGGACCAGG+AGG | - | chr1.4:2747113-2747132 | None:intergenic | 50.0% | |
| TGGACCGTCAAGTCCAAGTT+CGG | - | chr1.4:2747507-2747526 | None:intergenic | 50.0% | |
| TTGATGAAATGGATCGGGCG+CGG | + | chr1.4:2747803-2747822 | MS.gene062735:CDS | 50.0% | |
| ! | CGGGGAAGCTTTTACCATCA+AGG | - | chr1.4:2747157-2747176 | None:intergenic | 50.0% |
| !! | AGTCCAAGTTCGGTGTCAAC+AGG | - | chr1.4:2747497-2747516 | None:intergenic | 50.0% |
| !! | CGTGATAAGGTGGTGGAAGA+GGG | - | chr1.4:2746849-2746868 | None:intergenic | 50.0% |
| !! | GTCCAAGTTCGGTGTCAACA+GGG | - | chr1.4:2747496-2747515 | None:intergenic | 50.0% |
| !! | TCGTGATAAGGTGGTGGAAG+AGG | - | chr1.4:2746850-2746869 | None:intergenic | 50.0% |
| !!! | GTTTTGGTTCGGAGGGATCA+AGG | - | chr1.4:2747277-2747296 | None:intergenic | 50.0% |
| ACTGGGCCTACCGAAGTTTG+TGG | + | chr1.4:2747574-2747593 | MS.gene062735:CDS | 55.0% | |
| CGATCTTCGATGCGTCGAAG+AGG | - | chr1.4:2747181-2747200 | None:intergenic | 55.0% | |
| CTTCGATGCGTCGAAGAGGA+CGG | - | chr1.4:2747177-2747196 | None:intergenic | 55.0% | |
| GACCAGGAGGAACGTTAGTG+CGG | - | chr1.4:2747100-2747119 | None:intergenic | 55.0% | |
| GGAACGTCGTGATAAGGTGG+TGG | - | chr1.4:2746856-2746875 | None:intergenic | 55.0% | |
| GGAGATTACTATGGCGGCCA+TGG | + | chr1.4:2747889-2747908 | MS.gene062735:CDS | 55.0% | |
| GGAGGAACGTCGTGATAAGG+TGG | - | chr1.4:2746859-2746878 | None:intergenic | 55.0% | |
| GGTAGGCCCAGTTTCAGAAC+TGG | - | chr1.4:2747566-2747585 | None:intergenic | 55.0% | |
| GGTGGAGGAACGTCGTGATA+AGG | - | chr1.4:2746862-2746881 | None:intergenic | 55.0% | |
| TGCTGGCGGGGAGATTACTA+TGG | + | chr1.4:2747880-2747899 | MS.gene062735:CDS | 55.0% | |
| TGGCGGGGAGATTACTATGG+CGG | + | chr1.4:2747883-2747902 | MS.gene062735:CDS | 55.0% | |
| TTCCGCACTAACGTTCCTCC+TGG | + | chr1.4:2747095-2747114 | MS.gene062735:CDS | 55.0% | |
| TTCCTCGAGAGCAAATCCCG+AGG | - | chr1.4:2747684-2747703 | None:intergenic | 55.0% | |
| TTCGATGCGTCGAAGAGGAC+GGG | - | chr1.4:2747176-2747195 | None:intergenic | 55.0% | |
| ! | CTCGAGGAAGCAGAGCGTTT+AGG | + | chr1.4:2747695-2747714 | MS.gene062735:CDS | 55.0% |
| ! | TTCCTCGGGATTTGCTCTCG+AGG | + | chr1.4:2747679-2747698 | MS.gene062735:CDS | 55.0% |
| ATGAAATGGATCGGGCGCGG+TGG | + | chr1.4:2747806-2747825 | MS.gene062735:CDS | 60.0% | |
| TCGATGCGTCGAAGAGGACG+GGG | - | chr1.4:2747175-2747194 | None:intergenic | 60.0% | |
| GGATCGGGCGCGGTGGAGTG+AGG | + | chr1.4:2747813-2747832 | MS.gene062735:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 2746789 | 2748363 | 2746789 | ID=MS.gene062735 |
| chr1.4 | mRNA | 2746789 | 2748363 | 2746789 | ID=MS.gene062735.t1;Parent=MS.gene062735 |
| chr1.4 | exon | 2746789 | 2748363 | 2746789 | ID=MS.gene062735.t1.exon1;Parent=MS.gene062735.t1 |
| chr1.4 | CDS | 2746789 | 2748363 | 2746789 | ID=cds.MS.gene062735.t1;Parent=MS.gene062735.t1 |
| Gene Sequence |
| Protein sequence |
