Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063667.t1 | XP_003612249.1 | 99.2 | 266 | 2 | 0 | 1 | 266 | 1 | 266 | 9.60E-148 | 532.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063667.t1 | F4JZ24 | 75.6 | 266 | 64 | 1 | 1 | 266 | 2 | 266 | 7.0e-115 | 414.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063667.t1 | G7JYR0 | 99.2 | 266 | 2 | 0 | 1 | 266 | 1 | 266 | 6.9e-148 | 532.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene063667 | 0.80578 | 1.13E-49 | -1.69E-46 |
| MS.gene049350 | MS.gene063667 | 0.801581 | 8.42E-49 | -1.69E-46 |
| MS.gene049807 | MS.gene063667 | 0.85894 | 5.83E-63 | -1.69E-46 |
| MS.gene051234 | MS.gene063667 | 0.815706 | 8.06E-52 | -1.69E-46 |
| MS.gene052072 | MS.gene063667 | 0.808303 | 3.31E-50 | -1.69E-46 |
| MS.gene052307 | MS.gene063667 | 0.810833 | 9.47E-51 | -1.69E-46 |
| MS.gene052533 | MS.gene063667 | 0.813793 | 2.14E-51 | -1.69E-46 |
| MS.gene052793 | MS.gene063667 | 0.815646 | 8.31E-52 | -1.69E-46 |
| MS.gene055221 | MS.gene063667 | 0.813159 | 2.95E-51 | -1.69E-46 |
| MS.gene057102 | MS.gene063667 | 0.86245 | 5.03E-64 | -1.69E-46 |
| MS.gene058210 | MS.gene063667 | 0.801284 | 9.68E-49 | -1.69E-46 |
| MS.gene058492 | MS.gene063667 | 0.801788 | 7.63E-49 | -1.69E-46 |
| MS.gene059227 | MS.gene063667 | 0.813828 | 2.10E-51 | -1.69E-46 |
| MS.gene059778 | MS.gene063667 | 0.845438 | 4.06E-59 | -1.69E-46 |
| MS.gene05985 | MS.gene063667 | -0.807115 | 5.92E-50 | -1.69E-46 |
| MS.gene061100 | MS.gene063667 | 0.836913 | 7.08E-57 | -1.69E-46 |
| MS.gene061188 | MS.gene063667 | 0.8161 | 6.58E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063667.t1 | MTR_5g022960 | 99.248 | 266 | 2 | 0 | 1 | 266 | 1 | 266 | 0.0 | 547 |
| MS.gene063667.t1 | MTR_5g022960 | 98.529 | 204 | 3 | 0 | 1 | 204 | 1 | 204 | 1.69e-149 | 416 |
| MS.gene063667.t1 | MTR_8g074810 | 69.403 | 268 | 67 | 4 | 1 | 266 | 1 | 255 | 9.67e-129 | 366 |
| MS.gene063667.t1 | MTR_3g114670 | 64.662 | 266 | 85 | 2 | 1 | 266 | 1 | 257 | 1.08e-128 | 366 |
| MS.gene063667.t1 | MTR_8g074880 | 68.852 | 244 | 74 | 1 | 23 | 266 | 62 | 303 | 8.33e-125 | 358 |
| MS.gene063667.t1 | MTR_8g074890 | 64.662 | 266 | 82 | 2 | 1 | 266 | 1 | 254 | 6.38e-123 | 351 |
| MS.gene063667.t1 | MTR_8g074830 | 64.552 | 268 | 83 | 3 | 1 | 266 | 1 | 258 | 1.79e-117 | 338 |
| MS.gene063667.t1 | MTR_8g074870 | 71.642 | 201 | 43 | 2 | 66 | 266 | 16 | 202 | 1.82e-103 | 300 |
| MS.gene063667.t1 | MTR_3g114610 | 64.433 | 194 | 64 | 1 | 73 | 266 | 91 | 279 | 8.77e-88 | 263 |
| MS.gene063667.t1 | MTR_3g114590 | 65.464 | 194 | 61 | 1 | 73 | 266 | 59 | 246 | 3.06e-85 | 266 |
| MS.gene063667.t1 | MTR_3g114590 | 56.571 | 175 | 49 | 3 | 95 | 266 | 293 | 443 | 3.20e-51 | 176 |
| MS.gene063667.t1 | MTR_6g009440 | 56.614 | 189 | 81 | 1 | 78 | 266 | 51 | 238 | 1.77e-73 | 227 |
| MS.gene063667.t1 | MTR_2g020800 | 55.385 | 195 | 79 | 2 | 78 | 266 | 40 | 232 | 1.65e-70 | 219 |
| MS.gene063667.t1 | MTR_2g020800 | 55.959 | 193 | 79 | 2 | 78 | 266 | 40 | 230 | 2.50e-70 | 219 |
| MS.gene063667.t1 | MTR_4g118560 | 52.308 | 195 | 83 | 2 | 78 | 266 | 37 | 227 | 2.03e-66 | 209 |
| MS.gene063667.t1 | MTR_1g116810 | 49.524 | 210 | 90 | 4 | 65 | 266 | 58 | 259 | 4.96e-59 | 189 |
| MS.gene063667.t1 | MTR_4g095370 | 46.114 | 193 | 93 | 7 | 79 | 266 | 86 | 272 | 6.41e-50 | 166 |
| MS.gene063667.t1 | MTR_3g051200 | 56.296 | 135 | 57 | 2 | 93 | 226 | 25 | 158 | 1.06e-45 | 151 |
| MS.gene063667.t1 | MTR_5g016090 | 42.408 | 191 | 103 | 4 | 79 | 266 | 84 | 270 | 4.87e-43 | 148 |
| MS.gene063667.t1 | MTR_4g095370 | 43.443 | 122 | 64 | 4 | 79 | 196 | 86 | 206 | 8.85e-26 | 101 |
| MS.gene063667.t1 | MTR_4g095370 | 42.276 | 123 | 66 | 4 | 79 | 197 | 86 | 207 | 9.71e-26 | 100 |
| MS.gene063667.t1 | MTR_6g053720 | 28.980 | 245 | 142 | 9 | 28 | 266 | 4 | 222 | 1.55e-25 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063667.t1 | AT5G66060 | 75.564 | 266 | 64 | 1 | 1 | 266 | 2 | 266 | 3.65e-153 | 429 |
| MS.gene063667.t1 | AT1G20270 | 69.925 | 266 | 78 | 2 | 1 | 266 | 1 | 264 | 1.30e-140 | 397 |
| MS.gene063667.t1 | AT5G66060 | 72.131 | 244 | 65 | 2 | 1 | 244 | 2 | 242 | 6.26e-130 | 368 |
| MS.gene063667.t1 | AT2G17720 | 70.611 | 262 | 77 | 0 | 5 | 266 | 7 | 268 | 4.01e-129 | 368 |
| MS.gene063667.t1 | AT4G35810 | 71.121 | 232 | 64 | 1 | 38 | 266 | 37 | 268 | 4.63e-123 | 352 |
| MS.gene063667.t1 | AT4G35810 | 71.121 | 232 | 64 | 1 | 38 | 266 | 37 | 268 | 4.63e-123 | 352 |
| MS.gene063667.t1 | AT1G20270 | 66.010 | 203 | 67 | 2 | 1 | 203 | 1 | 201 | 4.15e-97 | 283 |
| MS.gene063667.t1 | AT1G20270 | 66.010 | 203 | 67 | 2 | 1 | 203 | 1 | 201 | 4.15e-97 | 283 |
| MS.gene063667.t1 | AT4G35820 | 57.000 | 200 | 56 | 3 | 75 | 266 | 85 | 262 | 2.88e-73 | 225 |
| MS.gene063667.t1 | AT3G28480 | 46.091 | 243 | 127 | 3 | 24 | 266 | 5 | 243 | 1.29e-71 | 223 |
| MS.gene063667.t1 | AT5G18900 | 53.927 | 191 | 86 | 1 | 78 | 266 | 37 | 227 | 3.19e-68 | 213 |
| MS.gene063667.t1 | AT3G06300 | 54.167 | 192 | 84 | 2 | 78 | 266 | 38 | 228 | 5.73e-67 | 210 |
| MS.gene063667.t1 | AT3G28490 | 54.011 | 187 | 84 | 2 | 81 | 266 | 35 | 220 | 1.60e-66 | 208 |
| MS.gene063667.t1 | AT2G43080 | 53.608 | 194 | 74 | 4 | 79 | 266 | 78 | 261 | 2.01e-61 | 195 |
| MS.gene063667.t1 | AT3G28480 | 49.239 | 197 | 91 | 3 | 78 | 266 | 56 | 251 | 3.25e-61 | 196 |
| MS.gene063667.t1 | AT4G33910 | 37.818 | 275 | 144 | 10 | 7 | 266 | 3 | 265 | 1.47e-46 | 157 |
| MS.gene063667.t1 | AT2G23096 | 33.200 | 250 | 157 | 5 | 20 | 266 | 10 | 252 | 5.13e-37 | 132 |
| MS.gene063667.t1 | AT2G43080 | 52.041 | 98 | 45 | 1 | 79 | 174 | 78 | 175 | 1.89e-25 | 99.8 |
| MS.gene063667.t1 | AT4G25600 | 31.351 | 185 | 101 | 5 | 81 | 265 | 62 | 220 | 9.15e-22 | 92.4 |
| MS.gene063667.t1 | AT4G25600 | 30.556 | 180 | 99 | 5 | 86 | 265 | 6 | 159 | 5.64e-19 | 83.6 |
| MS.gene063667.t1 | AT4G25600 | 30.556 | 180 | 99 | 5 | 86 | 265 | 3 | 156 | 5.97e-19 | 83.6 |
| MS.gene063667.t1 | AT4G25600 | 30.556 | 180 | 99 | 5 | 86 | 265 | 15 | 168 | 7.80e-19 | 83.2 |
Find 50 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTAAAGCATCACCTCTCTT+TGG | 0.342180 | 5.3:+13352556 | None:intergenic |
| GAGGTAAGATCGTTGGGTTT+AGG | 0.404374 | 5.3:+13355410 | None:intergenic |
| GATGAATATAACACAAAGAA+TGG | 0.412374 | 5.3:-13352823 | MS.gene063667:CDS |
| CTGAAATTCCCCTTAGCAGC+AGG | 0.415882 | 5.3:+13352637 | None:intergenic |
| ATGAATATAACACAAAGAAT+GGG | 0.423938 | 5.3:-13352822 | MS.gene063667:CDS |
| TGTAGAGTGCGTACGAGCTC+TGG | 0.433588 | 5.3:-13353301 | MS.gene063667:intron |
| AAATGATGATGAAGAAGGTA+AGG | 0.476008 | 5.3:-13355275 | MS.gene063667:CDS |
| CAGATATTCACATTCCTCCT+TGG | 0.476063 | 5.3:+13353515 | None:intergenic |
| AAACGAGAAGAATGAGGATA+AGG | 0.480852 | 5.3:+13355471 | None:intergenic |
| ACAGTTGTTGATAGCGAGAC+TGG | 0.480980 | 5.3:-13353459 | MS.gene063667:CDS |
| AACAATGGAGGTAAGATCGT+TGG | 0.490361 | 5.3:+13355403 | None:intergenic |
| ACAATGGAGGTAAGATCGTT+GGG | 0.491811 | 5.3:+13355404 | None:intergenic |
| ACTGTTGACTTGTGCATACT+CGG | 0.491867 | 5.3:+13353477 | None:intergenic |
| GATGCATCTAAAGTTGCATC+CGG | 0.502828 | 5.3:+13352517 | None:intergenic |
| TATAATGAGCTTTCTGATTG+TGG | 0.504044 | 5.3:-13352601 | MS.gene063667:CDS |
| GACAGTGTTCCCTGCTGCTA+AGG | 0.510901 | 5.3:-13352647 | MS.gene063667:CDS |
| AGTGGGTTGAAGTTGTATCA+TGG | 0.519666 | 5.3:-13355246 | MS.gene063667:CDS |
| TTAGATGCATCAAGCTTGCA+TGG | 0.521772 | 5.3:-13352505 | MS.gene063667:CDS |
| TACAGTACAGATGTTGAAGA+AGG | 0.524814 | 5.3:-13352676 | MS.gene063667:intron |
| ATAATGAGCTTTCTGATTGT+GGG | 0.530607 | 5.3:-13352600 | MS.gene063667:CDS |
| AAGAAGGTAAGGGTGAACAG+TGG | 0.530724 | 5.3:-13355264 | MS.gene063667:CDS |
| ACAGTGTTCCCTGCTGCTAA+GGG | 0.531155 | 5.3:-13352646 | MS.gene063667:CDS |
| TTGTGATACACAAAAGCTCT+AGG | 0.533206 | 5.3:+13355220 | None:intergenic |
| CTGGAAAGAGCAAAGACAGC+AGG | 0.539433 | 5.3:-13353440 | MS.gene063667:intron |
| ATTAGAAATGATGATGAAGA+AGG | 0.541569 | 5.3:-13355280 | MS.gene063667:intron |
| CACAATCTTATCACGTCCCC+TGG | 0.546111 | 5.3:+13353267 | None:intergenic |
| CAGTACAGATGTTGAAGAAG+GGG | 0.549364 | 5.3:-13352674 | MS.gene063667:CDS |
| GTGGGTTGAAGTTGTATCAT+GGG | 0.551409 | 5.3:-13355245 | MS.gene063667:CDS |
| AGAAGGTAAGGGTGAACAGT+GGG | 0.565306 | 5.3:-13355263 | MS.gene063667:CDS |
| CAAGTTCTACATTATGAAGT+CGG | 0.566702 | 5.3:-13352880 | MS.gene063667:CDS |
| ACAGTACAGATGTTGAAGAA+GGG | 0.576370 | 5.3:-13352675 | MS.gene063667:intron |
| TGAAATTCCCCTTAGCAGCA+GGG | 0.595044 | 5.3:+13352638 | None:intergenic |
| AATGATGATGAAGAAGGTAA+GGG | 0.600100 | 5.3:-13355274 | MS.gene063667:CDS |
| TTCCGAAAACGAGAAGAATG+AGG | 0.600315 | 5.3:+13355465 | None:intergenic |
| TGAATATAACACAAAGAATG+GGG | 0.607097 | 5.3:-13352821 | MS.gene063667:CDS |
| GATTGGAAGAAGGAATGGAG+AGG | 0.608811 | 5.3:+13355441 | None:intergenic |
| CTTTCAATTAAGCCAAAGAG+AGG | 0.612559 | 5.3:-13352568 | MS.gene063667:CDS |
| CAATATACAGAGCACGGTGA+AGG | 0.613394 | 5.3:-13352907 | MS.gene063667:intron |
| TTGTTCATAACACCGTCGAT+AGG | 0.618672 | 5.3:-13355385 | MS.gene063667:intron |
| ATCGACGGTGTTATGAACAA+TGG | 0.621359 | 5.3:+13355388 | None:intergenic |
| CAGTGTTCCCTGCTGCTAAG+GGG | 0.641768 | 5.3:-13352645 | MS.gene063667:CDS |
| TCAAGAAAGTAGTCATAGTG+AGG | 0.653721 | 5.3:+13352844 | None:intergenic |
| GACGGTGTTATGAACAATGG+AGG | 0.664067 | 5.3:+13355391 | None:intergenic |
| GAATATAACACAAAGAATGG+GGG | 0.666678 | 5.3:-13352820 | MS.gene063667:CDS |
| GGAATTTCAGTAATGTGCCG+TGG | 0.673959 | 5.3:-13352624 | MS.gene063667:CDS |
| ACAGAAACGTTACCTATCGA+CGG | 0.683390 | 5.3:+13355373 | None:intergenic |
| GGGGACGTGATAAGATTGTG+AGG | 0.685334 | 5.3:-13353264 | MS.gene063667:CDS |
| AGTACAGATGTTGAAGAAGG+GGG | 0.701130 | 5.3:-13352673 | MS.gene063667:CDS |
| TCAGAAAGCTCATTATACCA+CGG | 0.716313 | 5.3:+13352607 | None:intergenic |
| ATAATCTGAGTAGACCAAGG+AGG | 0.746271 | 5.3:-13353529 | MS.gene063667:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATGCTATTTATATATTAA+GGG | - | chr5.3:13353090-13353109 | MS.gene063667:intron | 10.0% |
| !!! | ATTATTTTTGTAAGTTATAT+TGG | + | chr5.3:13353242-13353261 | None:intergenic | 10.0% |
| !!! | TAAAAAAGAAATTAATTTTG+CGG | - | chr5.3:13354189-13354208 | MS.gene063667:intron | 10.0% |
| !!! | TATATGCTATTTATATATTA+AGG | - | chr5.3:13353089-13353108 | MS.gene063667:intron | 10.0% |
| !! | AAAAAAGTAAATATAATAGG+TGG | + | chr5.3:13354876-13354895 | None:intergenic | 15.0% |
| !! | AAAAAGTAAATATAATAGGT+GGG | + | chr5.3:13354875-13354894 | None:intergenic | 15.0% |
| !! | ATGAAATAGAATAAAAATTG+GGG | - | chr5.3:13353851-13353870 | MS.gene063667:intron | 15.0% |
| !! | CATGAAATAGAATAAAAATT+GGG | - | chr5.3:13353850-13353869 | MS.gene063667:intron | 15.0% |
| !! | TAATATTACACAATCATTAA+GGG | - | chr5.3:13354233-13354252 | MS.gene063667:intron | 15.0% |
| !!! | AAAAAAAAGAGTTAATTTTG+TGG | - | chr5.3:13353991-13354010 | MS.gene063667:intron | 15.0% |
| !!! | AAAAAAAGAGTTAATTTTGT+GGG | - | chr5.3:13353992-13354011 | MS.gene063667:intron | 15.0% |
| !!! | AAAAAAGAAATTAATTTTGC+GGG | - | chr5.3:13354190-13354209 | MS.gene063667:intron | 15.0% |
| !!! | AAGTTAGTTTTTTGTTTTAA+AGG | - | chr5.3:13353702-13353721 | MS.gene063667:intron | 15.0% |
| !!! | AGTTAGTTTTTTGTTTTAAA+GGG | - | chr5.3:13353703-13353722 | MS.gene063667:intron | 15.0% |
| !!! | ATGAACTATATATATGTTTT+TGG | - | chr5.3:13352964-13352983 | MS.gene063667:intron | 15.0% |
| !! | AAAAAACACTATTCCAAATT+AGG | + | chr5.3:13353736-13353755 | None:intergenic | 20.0% |
| !! | AAAAGTAAATATAATAGGTG+GGG | + | chr5.3:13354874-13354893 | None:intergenic | 20.0% |
| !! | ACTAAAATCATATTCAAACA+TGG | + | chr5.3:13354404-13354423 | None:intergenic | 20.0% |
| !! | ATGAATATAACACAAAGAAT+GGG | - | chr5.3:13355239-13355258 | MS.gene063667:CDS | 20.0% |
| !! | CTAATATTACACAATCATTA+AGG | - | chr5.3:13354232-13354251 | MS.gene063667:intron | 20.0% |
| !! | GCATGAAATAGAATAAAAAT+TGG | - | chr5.3:13353849-13353868 | MS.gene063667:intron | 20.0% |
| !! | TATGAATCGCATTAATAAAA+TGG | + | chr5.3:13352929-13352948 | None:intergenic | 20.0% |
| !! | TGAAATAGAATAAAAATTGG+GGG | - | chr5.3:13353852-13353871 | MS.gene063667:intron | 20.0% |
| !! | TTACAAAAAGAGTTTATTTC+TGG | - | chr5.3:13354921-13354940 | MS.gene063667:intron | 20.0% |
| !!! | AAAAAAGAGTTAATTTTGTG+GGG | - | chr5.3:13353993-13354012 | MS.gene063667:intron | 20.0% |
| !!! | AAAAAGAAATTAATTTTGCG+GGG | - | chr5.3:13354191-13354210 | MS.gene063667:intron | 20.0% |
| !!! | ATAAGTTTTGTGAAAATGTT+TGG | - | chr5.3:13353150-13353169 | MS.gene063667:intron | 20.0% |
| !!! | TATATTTCATAAGCTGTTTT+CGG | - | chr5.3:13353368-13353387 | MS.gene063667:intron | 20.0% |
| ! | AATAAATATTAATGCTCCAC+AGG | + | chr5.3:13354460-13354479 | None:intergenic | 25.0% |
| ! | AATAAGTTGTTTACACAAAC+AGG | - | chr5.3:13353636-13353655 | MS.gene063667:intron | 25.0% |
| ! | ACACACTAATAATAGAAGTA+GGG | - | chr5.3:13354042-13354061 | MS.gene063667:intron | 25.0% |
| ! | AGAAAGAAATATGTGAAGAT+GGG | + | chr5.3:13354737-13354756 | None:intergenic | 25.0% |
| ! | ATAAGTTGTTTACACAAACA+GGG | - | chr5.3:13353637-13353656 | MS.gene063667:intron | 25.0% |
| ! | CATAATAAAAGAAAGCTAGA+TGG | + | chr5.3:13355073-13355092 | None:intergenic | 25.0% |
| ! | CTAAGTAGATAGTTAAACAA+AGG | + | chr5.3:13354295-13354314 | None:intergenic | 25.0% |
| ! | GAAAGAATCCTATATGTTAA+GGG | - | chr5.3:13353780-13353799 | MS.gene063667:intron | 25.0% |
| ! | GATGAATATAACACAAAGAA+TGG | - | chr5.3:13355238-13355257 | MS.gene063667:CDS | 25.0% |
| ! | TACACACTAATAATAGAAGT+AGG | - | chr5.3:13354041-13354060 | MS.gene063667:intron | 25.0% |
| ! | TAGAAAGAAATATGTGAAGA+TGG | + | chr5.3:13354738-13354757 | None:intergenic | 25.0% |
| ! | TGAATATAACACAAAGAATG+GGG | - | chr5.3:13355240-13355259 | MS.gene063667:CDS | 25.0% |
| ! | TGTTAACTGAAAATATTCAG+TGG | + | chr5.3:13355047-13355066 | None:intergenic | 25.0% |
| ! | TTACTAACTTCAATTTGTCT+TGG | - | chr5.3:13355316-13355335 | MS.gene063667:intron | 25.0% |
| !! | AAAACTATTTGTGTTTTGCT+TGG | - | chr5.3:13354327-13354346 | MS.gene063667:intron | 25.0% |
| !! | ACCTAACAAGTTAATTTTGT+GGG | - | chr5.3:13353953-13353972 | MS.gene063667:intron | 25.0% |
| !! | ATTAGAAATGATGATGAAGA+AGG | - | chr5.3:13352781-13352800 | MS.gene063667:intron | 25.0% |
| !! | TTATTATGGTCTAAGATAGT+AGG | - | chr5.3:13355085-13355104 | MS.gene063667:intron | 25.0% |
| !! | TTTTGTGTATCACAATTTTC+TGG | - | chr5.3:13352849-13352868 | MS.gene063667:CDS | 25.0% |
| !!! | AATATGATTTTAGTGTGATG+TGG | - | chr5.3:13354410-13354429 | MS.gene063667:intron | 25.0% |
| !!! | CATCTAGCTTTCTTTTATTA+TGG | - | chr5.3:13355071-13355090 | MS.gene063667:intron | 25.0% |
| AAGTTATCATGCTAAGCTTA+TGG | + | chr5.3:13353401-13353420 | None:intergenic | 30.0% | |
| AATCCTATATGTTAAGGGTT+TGG | - | chr5.3:13353785-13353804 | MS.gene063667:intron | 30.0% | |
| ACACTAATAATAGAAGTAGG+GGG | - | chr5.3:13354044-13354063 | MS.gene063667:intron | 30.0% | |
| ACACTTTAACAGAGAAAGAT+AGG | + | chr5.3:13354658-13354677 | None:intergenic | 30.0% | |
| AGAACTTATGAAAACAGCTT+AGG | - | chr5.3:13353174-13353193 | MS.gene063667:intron | 30.0% | |
| AGCATATAGATAAGCACTTA+TGG | + | chr5.3:13353077-13353096 | None:intergenic | 30.0% | |
| ATAATGAGCTTTCTGATTGT+GGG | - | chr5.3:13355461-13355480 | MS.gene063667:CDS | 30.0% | |
| ATAGCTGATATGCATAAACA+AGG | - | chr5.3:13353909-13353928 | MS.gene063667:intron | 30.0% | |
| CAAGTTCTACATTATGAAGT+CGG | - | chr5.3:13355181-13355200 | MS.gene063667:intron | 30.0% | |
| CACACTAATAATAGAAGTAG+GGG | - | chr5.3:13354043-13354062 | MS.gene063667:intron | 30.0% | |
| CATCAGCACCAAAAAAAAAA+AGG | + | chr5.3:13352744-13352763 | None:intergenic | 30.0% | |
| GAAAGAAATATGTGAAGATG+GGG | + | chr5.3:13354736-13354755 | None:intergenic | 30.0% | |
| GAATATAACACAAAGAATGG+GGG | - | chr5.3:13355241-13355260 | MS.gene063667:CDS | 30.0% | |
| GCTATATGCTTAAAAATAGC+AGG | - | chr5.3:13353506-13353525 | MS.gene063667:CDS | 30.0% | |
| GGAAAGAATCCTATATGTTA+AGG | - | chr5.3:13353779-13353798 | MS.gene063667:intron | 30.0% | |
| TACTCAAAAGTTCTCACTAA+CGG | + | chr5.3:13354998-13355017 | None:intergenic | 30.0% | |
| TATAATGAGCTTTCTGATTG+TGG | - | chr5.3:13355460-13355479 | MS.gene063667:CDS | 30.0% | |
| TCAAACATGGAATTCAAACA+GGG | + | chr5.3:13354391-13354410 | None:intergenic | 30.0% | |
| TTATATATTAAGGGTCGCTT+TGG | - | chr5.3:13353099-13353118 | MS.gene063667:intron | 30.0% | |
| TTATCATGTGTGACATTGTT+TGG | - | chr5.3:13353320-13353339 | MS.gene063667:intron | 30.0% | |
| TTCAAACATGGAATTCAAAC+AGG | + | chr5.3:13354392-13354411 | None:intergenic | 30.0% | |
| TTCAGCTAAACTTTAGTGAT+TGG | + | chr5.3:13354513-13354532 | None:intergenic | 30.0% | |
| ! | AAATGATGATGAAGAAGGTA+AGG | - | chr5.3:13352786-13352805 | MS.gene063667:intron | 30.0% |
| ! | AACCTTATTTATGCCATATC+AGG | + | chr5.3:13354117-13354136 | None:intergenic | 30.0% |
| ! | AATGATGATGAAGAAGGTAA+GGG | - | chr5.3:13352787-13352806 | MS.gene063667:intron | 30.0% |
| ! | ATTTCTCTGTTTTGCATGTT+TGG | - | chr5.3:13353025-13353044 | MS.gene063667:intron | 30.0% |
| ! | CACCTAACAAGTTAATTTTG+TGG | - | chr5.3:13353952-13353971 | MS.gene063667:intron | 30.0% |
| ! | TTTTAATCACTTGTGGTTCT+TGG | - | chr5.3:13354258-13354277 | MS.gene063667:intron | 30.0% |
| !! | ACCCACAAAATTAACTTGTT+AGG | + | chr5.3:13353957-13353976 | None:intergenic | 30.0% |
| !! | GACTTTACTTTTATTCCTGT+AGG | - | chr5.3:13354841-13354860 | MS.gene063667:intron | 30.0% |
| !!! | TGATTCCGCCTTTTTTTTTT+TGG | - | chr5.3:13352733-13352752 | MS.gene063667:intron | 30.0% |
| !!! | TTTTTTTTTTGGTGCTGATG+AGG | - | chr5.3:13352744-13352763 | MS.gene063667:intron | 30.0% |
| AAACGAGAAGAATGAGGATA+AGG | + | chr5.3:13352593-13352612 | None:intergenic | 35.0% | |
| AAACTTTAGTGATTGGAAGG+TGG | + | chr5.3:13354506-13354525 | None:intergenic | 35.0% | |
| ACAAACCACAACCTTGATTA+AGG | + | chr5.3:13353663-13353682 | None:intergenic | 35.0% | |
| ACAGTACAGATGTTGAAGAA+GGG | - | chr5.3:13355386-13355405 | MS.gene063667:CDS | 35.0% | |
| AGCCTGATATGGCATAAATA+AGG | - | chr5.3:13354112-13354131 | MS.gene063667:intron | 35.0% | |
| CAGCACCAAAAAAAAAAAGG+CGG | + | chr5.3:13352741-13352760 | None:intergenic | 35.0% | |
| CTTGGTTAAATGATGCTTGA+TGG | - | chr5.3:13354345-13354364 | MS.gene063667:intron | 35.0% | |
| CTTTCAATTAAGCCAAAGAG+AGG | - | chr5.3:13355493-13355512 | MS.gene063667:CDS | 35.0% | |
| CTTTCTGATTGTGGGAAAAA+AGG | - | chr5.3:13355469-13355488 | MS.gene063667:CDS | 35.0% | |
| GCTAAACTTTAGTGATTGGA+AGG | + | chr5.3:13354509-13354528 | None:intergenic | 35.0% | |
| GTACCAAACCCTTAACATAT+AGG | + | chr5.3:13353791-13353810 | None:intergenic | 35.0% | |
| GTTAAATGATGCTTGATGGA+AGG | - | chr5.3:13354349-13354368 | MS.gene063667:intron | 35.0% | |
| GTTTAGTGCATAGCAATGAA+AGG | - | chr5.3:13353874-13353893 | MS.gene063667:intron | 35.0% | |
| TACAGTACAGATGTTGAAGA+AGG | - | chr5.3:13355385-13355404 | MS.gene063667:intron | 35.0% | |
| TCAAGAAAGTAGTCATAGTG+AGG | + | chr5.3:13355220-13355239 | None:intergenic | 35.0% | |
| TCAGAAAGCTCATTATACCA+CGG | + | chr5.3:13355457-13355476 | None:intergenic | 35.0% | |
| TGAATAATCTGAGTAGACCA+AGG | - | chr5.3:13354529-13354548 | MS.gene063667:intron | 35.0% | |
| TTGTGATACACAAAAGCTCT+AGG | + | chr5.3:13352844-13352863 | None:intergenic | 35.0% | |
| ! | AAGGGTCTTTTAATCACTTG+TGG | - | chr5.3:13354251-13354270 | MS.gene063667:intron | 35.0% |
| ! | ATCCTCATTCTTCTCGTTTT+CGG | - | chr5.3:13352594-13352613 | MS.gene063667:CDS | 35.0% |
| ! | ATGCTTGCTGAAGTATATGA+TGG | + | chr5.3:13355117-13355136 | None:intergenic | 35.0% |
| ! | CAATTTGTAGACTAGTCACA+CGG | + | chr5.3:13353759-13353778 | None:intergenic | 35.0% |
| ! | GATGAAGATGATTTTCGTGA+TGG | + | chr5.3:13352531-13352550 | None:intergenic | 35.0% |
| ! | GCAACCATTTTCAATTTCAG+AGG | + | chr5.3:13354681-13354700 | None:intergenic | 35.0% |
| ! | TAATTTTGTGGGGTTGAGTT+AGG | - | chr5.3:13354003-13354022 | MS.gene063667:intron | 35.0% |
| !! | AGTGAGAACTTTTGAGTAGT+TGG | - | chr5.3:13355000-13355019 | MS.gene063667:intron | 35.0% |
| !! | GTGTCCTCTGAAATTGAAAA+TGG | - | chr5.3:13354674-13354693 | MS.gene063667:intron | 35.0% |
| !! | GTGTGACTAGTCTACAAATT+GGG | - | chr5.3:13353758-13353777 | MS.gene063667:intron | 35.0% |
| !!! | GTTTTGATTGGAAGAAGGAA+TGG | + | chr5.3:13352628-13352647 | None:intergenic | 35.0% |
| AAAGGGAACACGTCCTAATT+TGG | - | chr5.3:13353720-13353739 | MS.gene063667:intron | 40.0% | |
| AACAATGGAGGTAAGATCGT+TGG | + | chr5.3:13352661-13352680 | None:intergenic | 40.0% | |
| ACAATGGAGGTAAGATCGTT+GGG | + | chr5.3:13352660-13352679 | None:intergenic | 40.0% | |
| ACAGAAACGTTACCTATCGA+CGG | + | chr5.3:13352691-13352710 | None:intergenic | 40.0% | |
| AGTACAGATGTTGAAGAAGG+GGG | - | chr5.3:13355388-13355407 | MS.gene063667:CDS | 40.0% | |
| ATAATCTGAGTAGACCAAGG+AGG | - | chr5.3:13354532-13354551 | MS.gene063667:intron | 40.0% | |
| ATGCTTGATGGAAGGTTCAA+GGG | - | chr5.3:13354357-13354376 | MS.gene063667:intron | 40.0% | |
| CAGATATTCACATTCCTCCT+TGG | + | chr5.3:13354549-13354568 | None:intergenic | 40.0% | |
| CAGTACAGATGTTGAAGAAG+GGG | - | chr5.3:13355387-13355406 | MS.gene063667:CDS | 40.0% | |
| CATCACATGCTATCACTTAC+AGG | + | chr5.3:13355294-13355313 | None:intergenic | 40.0% | |
| CATGGCTACATACCAAAGAA+AGG | - | chr5.3:13354075-13354094 | MS.gene063667:intron | 40.0% | |
| CATTGTTTCGATTGCCAGTA+TGG | - | chr5.3:13354706-13354725 | MS.gene063667:intron | 40.0% | |
| CTTTCTTTGGTATGTAGCCA+TGG | + | chr5.3:13354077-13354096 | None:intergenic | 40.0% | |
| GGCGGAATCAAATCGAAAAA+CGG | + | chr5.3:13352723-13352742 | None:intergenic | 40.0% | |
| TTAGATGCATCAAGCTTGCA+TGG | - | chr5.3:13355556-13355575 | MS.gene063667:CDS | 40.0% | |
| TTCCGAAAACGAGAAGAATG+AGG | + | chr5.3:13352599-13352618 | None:intergenic | 40.0% | |
| TTGTTCATAACACCGTCGAT+AGG | - | chr5.3:13352676-13352695 | MS.gene063667:intron | 40.0% | |
| ! | AGTAAAGCATCACCTCTCTT+TGG | + | chr5.3:13355508-13355527 | None:intergenic | 40.0% |
| ! | GATGCATCTAAAGTTGCATC+CGG | + | chr5.3:13355547-13355566 | None:intergenic | 40.0% |
| ! | GTGGGTTGAAGTTGTATCAT+GGG | - | chr5.3:13352816-13352835 | MS.gene063667:CDS | 40.0% |
| ! | GTTGGACTTTAGCCTTTCTT+TGG | + | chr5.3:13354090-13354109 | None:intergenic | 40.0% |
| !! | ACTGTTGACTTGTGCATACT+CGG | + | chr5.3:13354587-13354606 | None:intergenic | 40.0% |
| !! | AGTGGGTTGAAGTTGTATCA+TGG | - | chr5.3:13352815-13352834 | MS.gene063667:CDS | 40.0% |
| !! | ATCGACGGTGTTATGAACAA+TGG | + | chr5.3:13352676-13352695 | None:intergenic | 40.0% |
| !! | CGTGTGACTAGTCTACAAAT+TGG | - | chr5.3:13353757-13353776 | MS.gene063667:intron | 40.0% |
| !! | GAGGTGATGCTTTACTTTTC+TGG | - | chr5.3:13355512-13355531 | MS.gene063667:CDS | 40.0% |
| !! | GGGTTTAGGCAAGTTTTGAT+TGG | + | chr5.3:13352640-13352659 | None:intergenic | 40.0% |
| !! | TGTTTAACTTGAAGCTCCTG+TGG | - | chr5.3:13354441-13354460 | MS.gene063667:intron | 40.0% |
| !!! | GGCAAGTTTTGATTGGAAGA+AGG | + | chr5.3:13352633-13352652 | None:intergenic | 40.0% |
| !!! | TACGAGCTCTGGAACATTTT+TGG | - | chr5.3:13354771-13354790 | MS.gene063667:intron | 40.0% |
| AAAGAGCAAAGACAGCAGGT+AGG | - | chr5.3:13354625-13354644 | MS.gene063667:intron | 45.0% | |
| AAGAAGGTAAGGGTGAACAG+TGG | - | chr5.3:13352797-13352816 | MS.gene063667:CDS | 45.0% | |
| AAGTAGGGGGTTTAGTACCA+TGG | - | chr5.3:13354057-13354076 | MS.gene063667:intron | 45.0% | |
| AAGTCCAACGTAGCCTGATA+TGG | - | chr5.3:13354101-13354120 | MS.gene063667:intron | 45.0% | |
| ACCGTGCTCTGTATATTGTG+AGG | + | chr5.3:13355152-13355171 | None:intergenic | 45.0% | |
| AGAAGGTAAGGGTGAACAGT+GGG | - | chr5.3:13352798-13352817 | MS.gene063667:CDS | 45.0% | |
| CAATATACAGAGCACGGTGA+AGG | - | chr5.3:13355154-13355173 | MS.gene063667:intron | 45.0% | |
| CACAAACAGGGCCTTAATCA+AGG | - | chr5.3:13353649-13353668 | MS.gene063667:intron | 45.0% | |
| GAGGTAAGATCGTTGGGTTT+AGG | + | chr5.3:13352654-13352673 | None:intergenic | 45.0% | |
| GATGCTTGATGGAAGGTTCA+AGG | - | chr5.3:13354356-13354375 | MS.gene063667:intron | 45.0% | |
| GATTGGAAGAAGGAATGGAG+AGG | + | chr5.3:13352623-13352642 | None:intergenic | 45.0% | |
| GCCTCACAATATACAGAGCA+CGG | - | chr5.3:13355148-13355167 | MS.gene063667:intron | 45.0% | |
| GGAATTTCAGTAATGTGCCG+TGG | - | chr5.3:13355437-13355456 | MS.gene063667:CDS | 45.0% | |
| TATGCCATATCAGGCTACGT+TGG | + | chr5.3:13354108-13354127 | None:intergenic | 45.0% | |
| TGAAATTCCCCTTAGCAGCA+GGG | + | chr5.3:13355426-13355445 | None:intergenic | 45.0% | |
| !! | ACAGTTGTTGATAGCGAGAC+TGG | - | chr5.3:13354602-13354621 | MS.gene063667:intron | 45.0% |
| !! | GACGGTGTTATGAACAATGG+AGG | + | chr5.3:13352673-13352692 | None:intergenic | 45.0% |
| !!! | ACTTTTCTGGAGCATGAAGC+CGG | - | chr5.3:13355525-13355544 | MS.gene063667:CDS | 45.0% |
| !!! | CTCTGGAACATTTTTGGCCA+GGG | - | chr5.3:13354777-13354796 | MS.gene063667:intron | 45.0% |
| !!! | TCTGGAACATTTTTGGCCAG+GGG | - | chr5.3:13354778-13354797 | MS.gene063667:intron | 45.0% |
| !! | AAAAAAAAAGTAAATATAAT+AGG | + | chr5.3:13354879-13354898 | None:intergenic | 5.0% |
| AACTAGCAGCCTCGAACTCT+AGG | - | chr5.3:13353811-13353830 | MS.gene063667:intron | 50.0% | |
| ACAGTGTTCCCTGCTGCTAA+GGG | - | chr5.3:13355415-13355434 | MS.gene063667:CDS | 50.0% | |
| CACAATCTTATCACGTCCCC+TGG | + | chr5.3:13354797-13354816 | None:intergenic | 50.0% | |
| CAGGGCCTTAATCAAGGTTG+TGG | - | chr5.3:13353655-13353674 | MS.gene063667:intron | 50.0% | |
| CTGAAATTCCCCTTAGCAGC+AGG | + | chr5.3:13355427-13355446 | None:intergenic | 50.0% | |
| CTGGAAAGAGCAAAGACAGC+AGG | - | chr5.3:13354621-13354640 | MS.gene063667:intron | 50.0% | |
| GAAGATGGGGTTTGCCATAC+TGG | + | chr5.3:13354723-13354742 | None:intergenic | 50.0% | |
| GGGGACGTGATAAGATTGTG+AGG | - | chr5.3:13354797-13354816 | MS.gene063667:intron | 50.0% | |
| TTGTTCCCTCCTAGAGTTCG+AGG | + | chr5.3:13353823-13353842 | None:intergenic | 50.0% | |
| !!! | GCTCTGGAACATTTTTGGCC+AGG | - | chr5.3:13354776-13354795 | MS.gene063667:intron | 50.0% |
| AGGTGGGGTTACTTGCCTAC+AGG | + | chr5.3:13354859-13354878 | None:intergenic | 55.0% | |
| CAGTGTTCCCTGCTGCTAAG+GGG | - | chr5.3:13355416-13355435 | MS.gene063667:CDS | 55.0% | |
| GACAGTGTTCCCTGCTGCTA+AGG | - | chr5.3:13355414-13355433 | MS.gene063667:CDS | 55.0% | |
| TAGCAGCCTCGAACTCTAGG+AGG | - | chr5.3:13353814-13353833 | MS.gene063667:intron | 55.0% | |
| TGTAGAGTGCGTACGAGCTC+TGG | - | chr5.3:13354760-13354779 | MS.gene063667:intron | 55.0% | |
| ! | AGCAGCCTCGAACTCTAGGA+GGG | - | chr5.3:13353815-13353834 | MS.gene063667:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 13352501 | 13355582 | 13352501 | ID=MS.gene063667 |
| chr5.3 | mRNA | 13352501 | 13355582 | 13352501 | ID=MS.gene063667.t1;Parent=MS.gene063667 |
| chr5.3 | exon | 13355386 | 13355582 | 13355386 | ID=MS.gene063667.t1.exon1;Parent=MS.gene063667.t1 |
| chr5.3 | CDS | 13355386 | 13355582 | 13355386 | ID=cds.MS.gene063667.t1;Parent=MS.gene063667.t1 |
| chr5.3 | exon | 13355213 | 13355297 | 13355213 | ID=MS.gene063667.t1.exon2;Parent=MS.gene063667.t1 |
| chr5.3 | CDS | 13355213 | 13355297 | 13355213 | ID=cds.MS.gene063667.t1;Parent=MS.gene063667.t1 |
| chr5.3 | exon | 13353441 | 13353538 | 13353441 | ID=MS.gene063667.t1.exon3;Parent=MS.gene063667.t1 |
| chr5.3 | CDS | 13353441 | 13353538 | 13353441 | ID=cds.MS.gene063667.t1;Parent=MS.gene063667.t1 |
| chr5.3 | exon | 13353221 | 13353318 | 13353221 | ID=MS.gene063667.t1.exon4;Parent=MS.gene063667.t1 |
| chr5.3 | CDS | 13353221 | 13353318 | 13353221 | ID=cds.MS.gene063667.t1;Parent=MS.gene063667.t1 |
| chr5.3 | exon | 13352790 | 13352919 | 13352790 | ID=MS.gene063667.t1.exon5;Parent=MS.gene063667.t1 |
| chr5.3 | CDS | 13352790 | 13352919 | 13352790 | ID=cds.MS.gene063667.t1;Parent=MS.gene063667.t1 |
| chr5.3 | exon | 13352501 | 13352693 | 13352501 | ID=MS.gene063667.t1.exon6;Parent=MS.gene063667.t1 |
| chr5.3 | CDS | 13352501 | 13352693 | 13352501 | ID=cds.MS.gene063667.t1;Parent=MS.gene063667.t1 |
| Gene Sequence |
| Protein sequence |
