Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064524.t1 | XP_013461082.1 | 99.4 | 172 | 1 | 0 | 1 | 172 | 1 | 172 | 3.00E-96 | 361.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064524.t1 | F8WLS6 | 54.1 | 172 | 77 | 1 | 3 | 172 | 4 | 175 | 5.1e-52 | 205.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064524.t1 | A0A072V079 | 99.4 | 172 | 1 | 0 | 1 | 172 | 1 | 172 | 2.2e-96 | 361.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050168 | MS.gene064524 | 0.802708 | 4.93E-49 | -1.69E-46 |
| MS.gene053074 | MS.gene064524 | 0.830453 | 2.91E-55 | -1.69E-46 |
| MS.gene053630 | MS.gene064524 | 0.800641 | 1.31E-48 | -1.69E-46 |
| MS.gene055356 | MS.gene064524 | 0.803523 | 3.35E-49 | -1.69E-46 |
| MS.gene055358 | MS.gene064524 | 0.802568 | 5.27E-49 | -1.69E-46 |
| MS.gene057394 | MS.gene064524 | 0.805093 | 1.58E-49 | -1.69E-46 |
| MS.gene057395 | MS.gene064524 | 0.811905 | 5.54E-51 | -1.69E-46 |
| MS.gene057750 | MS.gene064524 | 0.802218 | 6.23E-49 | -1.69E-46 |
| MS.gene059006 | MS.gene064524 | 0.809487 | 1.85E-50 | -1.69E-46 |
| MS.gene059124 | MS.gene064524 | 0.814491 | 1.50E-51 | -1.69E-46 |
| MS.gene059128 | MS.gene064524 | 0.801314 | 9.55E-49 | -1.69E-46 |
| MS.gene060998 | MS.gene064524 | 0.802791 | 4.74E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064524.t1 | MTR_3g479470 | 96.667 | 180 | 3 | 1 | 1 | 177 | 1 | 180 | 5.35e-125 | 362 |
| MS.gene064524.t1 | MTR_3g479620 | 70.482 | 166 | 49 | 0 | 9 | 174 | 2 | 167 | 2.59e-82 | 242 |
| MS.gene064524.t1 | MTR_3g479520 | 66.667 | 171 | 54 | 1 | 10 | 177 | 12 | 182 | 8.07e-74 | 231 |
| MS.gene064524.t1 | MTR_3g079480 | 65.537 | 177 | 58 | 1 | 8 | 181 | 16 | 192 | 3.98e-73 | 229 |
| MS.gene064524.t1 | MTR_3g479490 | 65.031 | 163 | 57 | 0 | 10 | 172 | 3 | 165 | 1.46e-69 | 220 |
| MS.gene064524.t1 | MTR_5g464760 | 55.488 | 164 | 72 | 1 | 10 | 172 | 9 | 172 | 4.46e-59 | 192 |
| MS.gene064524.t1 | MTR_5g464810 | 54.658 | 161 | 72 | 1 | 13 | 172 | 12 | 172 | 4.65e-57 | 187 |
| MS.gene064524.t1 | MTR_5g064240 | 54.658 | 161 | 72 | 1 | 13 | 172 | 12 | 172 | 4.65e-57 | 187 |
| MS.gene064524.t1 | MTR_0036s0220 | 51.807 | 166 | 79 | 1 | 12 | 176 | 11 | 176 | 5.70e-56 | 184 |
| MS.gene064524.t1 | MTR_2g008210 | 47.953 | 171 | 84 | 2 | 3 | 172 | 1 | 167 | 2.77e-50 | 169 |
| MS.gene064524.t1 | MTR_6g014040 | 47.093 | 172 | 85 | 2 | 7 | 172 | 4 | 175 | 3.74e-47 | 161 |
| MS.gene064524.t1 | MTR_4g094220 | 46.341 | 164 | 86 | 1 | 11 | 172 | 5 | 168 | 2.23e-44 | 154 |
| MS.gene064524.t1 | MTR_3g008010 | 43.976 | 166 | 91 | 1 | 9 | 172 | 6 | 171 | 4.58e-44 | 153 |
| MS.gene064524.t1 | MTR_6g014290 | 42.771 | 166 | 93 | 1 | 9 | 172 | 6 | 171 | 6.19e-44 | 153 |
| MS.gene064524.t1 | MTR_6g014250 | 41.566 | 166 | 95 | 1 | 9 | 172 | 6 | 171 | 4.36e-43 | 150 |
| MS.gene064524.t1 | MTR_0199s0010 | 41.212 | 165 | 96 | 1 | 9 | 172 | 6 | 170 | 5.83e-42 | 143 |
| MS.gene064524.t1 | MTR_6g014195 | 44.643 | 168 | 88 | 2 | 10 | 172 | 7 | 174 | 1.52e-41 | 140 |
| MS.gene064524.t1 | MTR_6g014220 | 43.976 | 166 | 91 | 1 | 9 | 172 | 6 | 171 | 5.12e-41 | 145 |
| MS.gene064524.t1 | MTR_8g007585 | 41.071 | 168 | 98 | 1 | 9 | 175 | 6 | 173 | 4.22e-40 | 141 |
| MS.gene064524.t1 | MTR_6g014020 | 42.262 | 168 | 92 | 2 | 10 | 172 | 7 | 174 | 8.28e-40 | 142 |
| MS.gene064524.t1 | MTR_0288s0020 | 43.529 | 170 | 90 | 2 | 9 | 172 | 6 | 175 | 9.66e-40 | 141 |
| MS.gene064524.t1 | MTR_6g014270 | 43.529 | 170 | 89 | 2 | 10 | 172 | 4 | 173 | 8.95e-39 | 139 |
| MS.gene064524.t1 | MTR_6g014186 | 40.476 | 168 | 95 | 2 | 10 | 172 | 4 | 171 | 1.75e-38 | 137 |
| MS.gene064524.t1 | MTR_6g013440 | 41.714 | 175 | 97 | 2 | 3 | 172 | 1 | 175 | 2.27e-38 | 138 |
| MS.gene064524.t1 | MTR_6g014170 | 41.566 | 166 | 95 | 1 | 9 | 172 | 6 | 171 | 4.59e-38 | 137 |
| MS.gene064524.t1 | MTR_6g014150 | 42.857 | 168 | 91 | 2 | 10 | 172 | 4 | 171 | 2.49e-37 | 135 |
| MS.gene064524.t1 | MTR_6g014310 | 44.910 | 167 | 87 | 2 | 11 | 172 | 9 | 175 | 5.19e-37 | 134 |
| MS.gene064524.t1 | MTR_8g059425 | 39.759 | 166 | 97 | 1 | 10 | 172 | 7 | 172 | 9.59e-37 | 134 |
| MS.gene064524.t1 | MTR_6g014300 | 41.420 | 169 | 94 | 2 | 9 | 172 | 8 | 176 | 1.32e-35 | 130 |
| MS.gene064524.t1 | MTR_6g013450 | 42.515 | 167 | 91 | 2 | 11 | 172 | 8 | 174 | 1.75e-35 | 130 |
| MS.gene064524.t1 | MTR_6g014200 | 42.857 | 168 | 91 | 2 | 10 | 172 | 4 | 171 | 3.56e-35 | 129 |
| MS.gene064524.t1 | MTR_0475s0020 | 50.000 | 124 | 56 | 2 | 9 | 126 | 6 | 129 | 5.70e-34 | 120 |
| MS.gene064524.t1 | MTR_6g014187 | 40.476 | 168 | 95 | 2 | 10 | 172 | 7 | 174 | 3.04e-33 | 124 |
| MS.gene064524.t1 | MTR_7g011470 | 36.408 | 206 | 119 | 4 | 10 | 208 | 7 | 207 | 1.05e-32 | 122 |
| MS.gene064524.t1 | MTR_6g013960 | 39.881 | 168 | 96 | 2 | 10 | 172 | 7 | 174 | 1.71e-32 | 122 |
| MS.gene064524.t1 | MTR_7g011470 | 36.893 | 206 | 122 | 4 | 10 | 208 | 7 | 211 | 5.08e-32 | 120 |
| MS.gene064524.t1 | MTR_6g014240 | 39.394 | 165 | 87 | 2 | 10 | 172 | 4 | 157 | 1.41e-30 | 117 |
| MS.gene064524.t1 | MTR_6g014050 | 44.910 | 167 | 87 | 2 | 11 | 172 | 9 | 175 | 2.97e-30 | 116 |
| MS.gene064524.t1 | MTR_6g011340 | 40.476 | 168 | 95 | 2 | 10 | 172 | 7 | 174 | 7.36e-29 | 112 |
| MS.gene064524.t1 | MTR_6g013990 | 38.690 | 168 | 98 | 2 | 10 | 172 | 7 | 174 | 2.25e-27 | 108 |
| MS.gene064524.t1 | MTR_5g058320 | 38.415 | 164 | 86 | 3 | 11 | 172 | 8 | 158 | 1.81e-26 | 105 |
| MS.gene064524.t1 | MTR_6g013920 | 40.361 | 166 | 95 | 2 | 11 | 172 | 8 | 173 | 1.00e-25 | 103 |
| MS.gene064524.t1 | MTR_6g013900 | 36.747 | 166 | 101 | 2 | 11 | 172 | 8 | 173 | 4.34e-23 | 96.3 |
| MS.gene064524.t1 | MTR_7g013200 | 35.664 | 143 | 86 | 2 | 12 | 154 | 4 | 140 | 8.69e-22 | 92.4 |
| MS.gene064524.t1 | MTR_7g013220 | 35.152 | 165 | 98 | 3 | 12 | 169 | 4 | 166 | 3.81e-21 | 90.9 |
| MS.gene064524.t1 | MTR_7g013180 | 28.125 | 160 | 111 | 2 | 12 | 169 | 4 | 161 | 1.17e-19 | 86.7 |
| MS.gene064524.t1 | MTR_7g013260 | 31.646 | 158 | 101 | 2 | 12 | 169 | 5 | 155 | 1.26e-18 | 83.6 |
| MS.gene064524.t1 | MTR_5g031860 | 33.333 | 168 | 95 | 6 | 12 | 172 | 11 | 168 | 2.40e-18 | 82.8 |
| MS.gene064524.t1 | MTR_7g013240 | 31.013 | 158 | 102 | 2 | 12 | 169 | 5 | 155 | 1.35e-17 | 80.5 |
| MS.gene064524.t1 | MTR_5g031830 | 31.548 | 168 | 98 | 6 | 12 | 172 | 11 | 168 | 3.05e-16 | 76.6 |
| MS.gene064524.t1 | MTR_6g038240 | 28.402 | 169 | 106 | 4 | 9 | 170 | 7 | 167 | 1.03e-15 | 75.1 |
| MS.gene064524.t1 | MTR_6g013680 | 36.975 | 119 | 70 | 2 | 59 | 172 | 3 | 121 | 6.18e-15 | 72.8 |
| MS.gene064524.t1 | MTR_5g031840 | 32.000 | 175 | 93 | 7 | 10 | 172 | 2 | 162 | 7.76e-15 | 72.8 |
| MS.gene064524.t1 | MTR_4g064987 | 29.480 | 173 | 105 | 4 | 11 | 179 | 6 | 165 | 4.21e-14 | 70.5 |
| MS.gene064524.t1 | MTR_4g064987 | 28.994 | 169 | 101 | 4 | 11 | 170 | 6 | 164 | 1.16e-13 | 69.3 |
| MS.gene064524.t1 | MTR_5g035580 | 28.289 | 152 | 97 | 2 | 1 | 152 | 1 | 140 | 1.18e-13 | 69.3 |
| MS.gene064524.t1 | MTR_7g080935 | 33.088 | 136 | 75 | 6 | 9 | 141 | 7 | 129 | 2.97e-13 | 68.2 |
| MS.gene064524.t1 | MTR_3g069690 | 30.636 | 173 | 104 | 6 | 13 | 182 | 8 | 167 | 8.63e-13 | 66.6 |
| MS.gene064524.t1 | MTR_5g035560 | 27.143 | 140 | 90 | 2 | 13 | 152 | 11 | 138 | 4.23e-12 | 64.7 |
| MS.gene064524.t1 | MTR_7g080950 | 33.333 | 147 | 70 | 6 | 11 | 148 | 4 | 131 | 1.05e-11 | 63.5 |
| MS.gene064524.t1 | MTR_7g106850 | 64.103 | 39 | 13 | 1 | 16 | 53 | 142 | 180 | 1.82e-11 | 60.8 |
| MS.gene064524.t1 | MTR_8g088560 | 27.922 | 154 | 104 | 4 | 13 | 165 | 10 | 157 | 5.93e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064524.t1 | AT1G22370 | 47.093 | 172 | 91 | 0 | 1 | 172 | 1 | 172 | 6.34e-58 | 189 |
| MS.gene064524.t1 | AT1G22360 | 51.220 | 164 | 80 | 0 | 9 | 172 | 6 | 169 | 1.16e-57 | 189 |
| MS.gene064524.t1 | AT1G22360 | 51.220 | 164 | 80 | 0 | 9 | 172 | 6 | 169 | 1.22e-57 | 189 |
| MS.gene064524.t1 | AT1G22400 | 48.256 | 172 | 89 | 0 | 1 | 172 | 1 | 172 | 2.23e-57 | 188 |
| MS.gene064524.t1 | AT1G22380 | 50.898 | 167 | 82 | 0 | 6 | 172 | 6 | 172 | 3.27e-57 | 188 |
| MS.gene064524.t1 | AT1G22340 | 47.674 | 172 | 90 | 0 | 1 | 172 | 1 | 172 | 5.54e-55 | 182 |
| MS.gene064524.t1 | AT1G78270 | 46.512 | 172 | 92 | 0 | 7 | 178 | 7 | 178 | 1.76e-53 | 178 |
| MS.gene064524.t1 | AT3G02100 | 32.927 | 164 | 102 | 4 | 11 | 169 | 11 | 171 | 6.04e-21 | 90.5 |
| MS.gene064524.t1 | AT3G46660 | 36.047 | 172 | 92 | 4 | 3 | 168 | 1 | 160 | 1.10e-19 | 86.7 |
| MS.gene064524.t1 | AT3G46650 | 33.929 | 168 | 90 | 5 | 11 | 172 | 8 | 160 | 4.65e-17 | 79.0 |
| MS.gene064524.t1 | AT3G46670 | 34.969 | 163 | 84 | 6 | 13 | 169 | 9 | 155 | 5.15e-16 | 76.3 |
| MS.gene064524.t1 | AT3G21560 | 33.333 | 153 | 97 | 3 | 12 | 160 | 11 | 162 | 5.49e-16 | 76.3 |
| MS.gene064524.t1 | AT2G36970 | 31.098 | 164 | 103 | 3 | 9 | 164 | 6 | 167 | 1.82e-15 | 74.7 |
| MS.gene064524.t1 | AT5G38010 | 33.793 | 145 | 84 | 4 | 10 | 151 | 7 | 142 | 4.37e-15 | 73.6 |
| MS.gene064524.t1 | AT3G46690 | 35.000 | 160 | 95 | 4 | 10 | 169 | 6 | 156 | 6.46e-15 | 73.2 |
| MS.gene064524.t1 | AT3G46720 | 36.913 | 149 | 72 | 5 | 9 | 151 | 5 | 137 | 2.82e-14 | 71.2 |
| MS.gene064524.t1 | AT2G26480 | 33.929 | 168 | 93 | 5 | 10 | 175 | 5 | 156 | 3.50e-13 | 67.8 |
| MS.gene064524.t1 | AT3G11340 | 27.907 | 172 | 110 | 5 | 11 | 182 | 7 | 164 | 4.58e-13 | 67.8 |
| MS.gene064524.t1 | AT5G59590 | 33.553 | 152 | 80 | 5 | 10 | 155 | 7 | 143 | 4.77e-13 | 67.4 |
| MS.gene064524.t1 | AT4G15490 | 29.936 | 157 | 100 | 3 | 9 | 160 | 4 | 155 | 1.05e-12 | 66.6 |
| MS.gene064524.t1 | AT5G05880 | 29.630 | 162 | 102 | 4 | 13 | 172 | 8 | 159 | 1.60e-12 | 65.9 |
| MS.gene064524.t1 | AT5G59580 | 33.775 | 151 | 78 | 5 | 11 | 155 | 7 | 141 | 1.66e-12 | 65.9 |
| MS.gene064524.t1 | AT5G05900 | 27.586 | 174 | 110 | 3 | 13 | 180 | 8 | 171 | 4.48e-12 | 64.7 |
| MS.gene064524.t1 | AT2G30140 | 31.447 | 159 | 94 | 5 | 9 | 164 | 9 | 155 | 6.21e-12 | 64.3 |
| MS.gene064524.t1 | AT2G30140 | 31.447 | 159 | 94 | 5 | 9 | 164 | 9 | 155 | 6.45e-12 | 64.3 |
| MS.gene064524.t1 | AT5G38040 | 31.544 | 149 | 92 | 3 | 21 | 169 | 18 | 156 | 1.07e-11 | 63.5 |
| MS.gene064524.t1 | AT2G28080 | 30.065 | 153 | 97 | 4 | 17 | 163 | 22 | 170 | 1.18e-11 | 63.5 |
| MS.gene064524.t1 | AT3G46680 | 29.897 | 194 | 95 | 7 | 10 | 189 | 6 | 172 | 1.22e-11 | 63.5 |
| MS.gene064524.t1 | AT2G31790 | 27.389 | 157 | 103 | 3 | 6 | 162 | 1 | 146 | 3.65e-11 | 62.0 |
| MS.gene064524.t1 | AT2G43840 | 28.188 | 149 | 97 | 4 | 13 | 160 | 7 | 146 | 3.83e-11 | 62.0 |
| MS.gene064524.t1 | AT2G43840 | 28.188 | 149 | 97 | 4 | 13 | 160 | 7 | 146 | 3.91e-11 | 62.0 |
Find 0 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAATAAATATCAAATG+TGG | + | 24162:12176-12195 | MS.gene064524:intron | 10.0% |
| !! | ATAAAATATTCAATCAAAAT+TGG | - | 24162:13014-13033 | MS.gene064524:intergenic | 10.0% |
| !! | TAAAAATAAATATCAAATGT+GGG | + | 24162:12177-12196 | MS.gene064524:intron | 10.0% |
| !! | AATAATTTGAATTGAAACTT+AGG | + | 24162:12901-12920 | MS.gene064524:intron | 15.0% |
| !! | ATAATTTGAATTGAAACTTA+GGG | + | 24162:12902-12921 | MS.gene064524:intron | 15.0% |
| !! | TAAGTTTCAATTCAAATTAT+TGG | - | 24162:12902-12921 | MS.gene064524:intergenic | 15.0% |
| !! | TTAAAAAAGAAAAATCTCAT+CGG | + | 24162:12240-12259 | MS.gene064524:intron | 15.0% |
| !! | TTGATAGAAATAAGTAAAAT+TGG | - | 24162:12686-12705 | MS.gene064524:intergenic | 15.0% |
| !!! | AAACTAAACTCTTTTAAATA+AGG | + | 24162:12082-12101 | MS.gene064524:intron | 15.0% |
| !!! | AGTAAAATTGGTTTAATATA+AGG | - | 24162:12674-12693 | MS.gene064524:intergenic | 15.0% |
| !!! | ATTTTATGAACTAAATTAAC+TGG | + | 24162:11866-11885 | MS.gene064524:intron | 15.0% |
| !!! | TGAATTAATTCGATTTTTTA+TGG | + | 24162:12550-12569 | MS.gene064524:intron | 15.0% |
| !!! | TTAAGAAATTTTGTTTTTGT+TGG | - | 24162:12138-12157 | MS.gene064524:intergenic | 15.0% |
| !! | GTTACATCTATTATATATGA+TGG | + | 24162:11604-11623 | MS.gene064524:CDS | 20.0% |
| !! | TAACTTATAATCAGATAAAG+AGG | + | 24162:12949-12968 | MS.gene064524:intron | 20.0% |
| !! | TACTAAAAATTGAGACATAT+AGG | + | 24162:11803-11822 | MS.gene064524:intron | 20.0% |
| !! | TATATAATAGATGTAACTTG+AGG | - | 24162:11601-11620 | MS.gene064524:intergenic | 20.0% |
| !! | TGAACGTAAAAAATCAATAT+TGG | - | 24162:12816-12835 | MS.gene064524:intergenic | 20.0% |
| !!! | AAAAGCATTCTTAAATTAGA+TGG | - | 24162:12490-12509 | MS.gene064524:intergenic | 20.0% |
| !!! | ATCAATCTTTTGCTAATTTT+TGG | - | 24162:12049-12068 | MS.gene064524:intergenic | 20.0% |
| !!! | ATTATATATGATGGACTTAT+GGG | + | 24162:11613-11632 | MS.gene064524:CDS | 20.0% |
| !!! | GACTATTTTAACTTTTTTTG+AGG | + | 24162:11930-11949 | MS.gene064524:intron | 20.0% |
| !!! | TATTATATATGATGGACTTA+TGG | + | 24162:11612-11631 | MS.gene064524:CDS | 20.0% |
| !!! | TATTTTAACTTTTTTTGAGG+TGG | + | 24162:11933-11952 | MS.gene064524:intron | 20.0% |
| !!! | TCTTTTTTAATAACTTCTGA+TGG | - | 24162:12230-12249 | MS.gene064524:intergenic | 20.0% |
| ! | AAAAGAGAGAAAAAACCAAA+GGG | - | 24162:13237-13256 | MS.gene064524:intergenic | 25.0% |
| ! | ATCAAACTATAACCTTTGTA+TGG | - | 24162:11757-11776 | MS.gene064524:intergenic | 25.0% |
| ! | CTTTCCTTGTAATAAATGAA+CGG | - | 24162:13170-13189 | MS.gene064524:intergenic | 25.0% |
| ! | GATGAAAGTTATATTACTGA+TGG | + | 24162:13066-13085 | MS.gene064524:intron | 25.0% |
| ! | TAAATAAGGCTATCAATCAT+TGG | + | 24162:12096-12115 | MS.gene064524:intron | 25.0% |
| ! | TCTTCACAAAAAATCTATAC+AGG | + | 24162:12354-12373 | MS.gene064524:intron | 25.0% |
| ! | TTATTACAAGGAAAGATCAA+TGG | + | 24162:13175-13194 | MS.gene064524:intron | 25.0% |
| ! | TTGGAATTAAAACACATGAA+TGG | + | 24162:13199-13218 | MS.gene064524:intron | 25.0% |
| !! | ATCAGATTTTACTTATCTCT+TGG | + | 24162:12585-12604 | MS.gene064524:intron | 25.0% |
| !! | CTTTTGAACAAGTAAGATTA+AGG | - | 24162:13319-13338 | MS.gene064524:intergenic | 25.0% |
| !! | TTTCTATCAAGAAAAAGTGT+TGG | + | 24162:12696-12715 | MS.gene064524:intron | 25.0% |
| !!! | ATTTTAGCTAATTGCATGAA+AGG | - | 24162:11328-11347 | MS.gene064524:intergenic | 25.0% |
| !!! | GGGCAAATTTTTTTTTCAAT+TGG | + | 24162:12922-12941 | MS.gene064524:intron | 25.0% |
| !!! | TTTTAGCTAATTGCATGAAA+GGG | - | 24162:11327-11346 | MS.gene064524:intergenic | 25.0% |
| AAACGTTTGGTAAAATCTCT+TGG | + | 24162:11400-11419 | MS.gene064524:CDS | 30.0% | |
| AGAAATATGCTTCCATACAA+AGG | + | 24162:11742-11761 | MS.gene064524:CDS | 30.0% | |
| AGAACTGGAGAAAAATTACA+CGG | - | 24162:13128-13147 | MS.gene064524:intergenic | 30.0% | |
| ATAGTCTCAAACCTAAAATC+TGG | - | 24162:11448-11467 | MS.gene064524:intergenic | 30.0% | |
| CAAAAGAGAGAAAAAACCAA+AGG | - | 24162:13238-13257 | MS.gene064524:intergenic | 30.0% | |
| GCTAAAATCCTTAACAAACT+TGG | + | 24162:11340-11359 | MS.gene064524:CDS | 30.0% | |
| GTTGAATTCATTGTTCACAA+AGG | - | 24162:11377-11396 | MS.gene064524:intergenic | 30.0% | |
| TGAACAAGTAAGATTAAGGT+GGG | - | 24162:13315-13334 | MS.gene064524:intergenic | 30.0% | |
| TGAGGAAAAAAAGGTGAAAA+CGG | - | 24162:13287-13306 | MS.gene064524:intergenic | 30.0% | |
| TTGAACAAGTAAGATTAAGG+TGG | - | 24162:13316-13335 | MS.gene064524:intergenic | 30.0% | |
| TTTGTTGGAAGATTCAGAAT+AGG | - | 24162:12123-12142 | MS.gene064524:intergenic | 30.0% | |
| ! | CTTGGACATGACTTTTTAAA+GGG | + | 24162:11418-11437 | MS.gene064524:CDS | 30.0% |
| ! | TCTTGGACATGACTTTTTAA+AGG | + | 24162:11417-11436 | MS.gene064524:CDS | 30.0% |
| AATGGTACACAAACTACATG+AGG | - | 24162:11283-11302 | MS.gene064524:intergenic | 35.0% | |
| ACAAGGAAAGATCAATGGAT+TGG | + | 24162:13180-13199 | MS.gene064524:intron | 35.0% | |
| ACGATGGGATAACAATGATT+TGG | + | 24162:13467-13486 | MS.gene064524:CDS | 35.0% | |
| CATTGTTCACAAAGGTTATG+TGG | - | 24162:11369-11388 | MS.gene064524:intergenic | 35.0% | |
| GAAAATGCTACACAAAGCAT+TGG | + | 24162:11493-11512 | MS.gene064524:CDS | 35.0% | |
| GAACTGGAGAAAAATTACAC+GGG | - | 24162:13127-13146 | MS.gene064524:intergenic | 35.0% | |
| GAGGAAAAAAAGGTGAAAAC+GGG | - | 24162:13286-13305 | MS.gene064524:intergenic | 35.0% | |
| GGTCGAATCTCAGATTATTA+GGG | + | 24162:12606-12625 | MS.gene064524:intron | 35.0% | |
| GGTTGTAGGAAACATTGTTA+TGG | + | 24162:11529-11548 | MS.gene064524:CDS | 35.0% | |
| GTAGATGTTGCAAAGGATTT+GGG | + | 24162:11643-11662 | MS.gene064524:CDS | 35.0% | |
| TCAGCCGTTCATTTATTACA+AGG | + | 24162:13163-13182 | MS.gene064524:intron | 35.0% | |
| TCTTCGTAGTTATATGTGCT+TGG | + | 24162:12264-12283 | MS.gene064524:intron | 35.0% | |
| TGAATTCAACCACAAACGTT+TGG | + | 24162:11387-11406 | MS.gene064524:CDS | 35.0% | |
| TGGTCGAATCTCAGATTATT+AGG | + | 24162:12605-12624 | MS.gene064524:intron | 35.0% | |
| TGTAGATGTTGCAAAGGATT+TGG | + | 24162:11642-11661 | MS.gene064524:CDS | 35.0% | |
| TTATATTACTGATGGCTCCT+TGG | + | 24162:13074-13093 | MS.gene064524:intron | 35.0% | |
| ! | ATGATGGAGTTGCAATTAGT+GGG | - | 24162:13349-13368 | MS.gene064524:intergenic | 35.0% |
| ! | GAGATTTTACCAAACGTTTG+TGG | - | 24162:11399-11418 | MS.gene064524:intergenic | 35.0% |
| ! | TAAAGGGTCAACCAGATTTT+AGG | + | 24162:11434-11453 | MS.gene064524:CDS | 35.0% |
| ! | TGTGTAGCATTTTCATCTGA+TGG | - | 24162:11487-11506 | MS.gene064524:intergenic | 35.0% |
| !! | AAAAGTGTTGGTGTAACTGA+TGG | + | 24162:12708-12727 | MS.gene064524:intron | 35.0% |
| !! | ATTTGCTGTAGATGTTGCAA+AGG | + | 24162:11636-11655 | MS.gene064524:CDS | 35.0% |
| !! | TGGGTTTTGTGAGGAAAAAA+AGG | - | 24162:13296-13315 | MS.gene064524:intergenic | 35.0% |
| !! | TGTGGAAACCAAGTTTGTTA+AGG | - | 24162:11351-11370 | MS.gene064524:intergenic | 35.0% |
| CACTGTTATCCCATCATGAA+TGG | - | 24162:13404-13423 | MS.gene064524:intergenic | 40.0% | |
| CCATCATGAATGGTTGCAAA+CGG | - | 24162:13394-13413 | MS.gene064524:intergenic | 40.0% | |
| CGTTTGCAACCATTCATGAT+GGG | + | 24162:13392-13411 | MS.gene064524:intron | 40.0% | |
| TCGTGAATCACAGTTGCAAA+TGG | - | 24162:13451-13470 | MS.gene064524:intergenic | 40.0% | |
| TCTTACCCTCCAGATTCTAA+GGG | - | 24162:12639-12658 | MS.gene064524:intergenic | 40.0% | |
| TGATGGAGTTGCAATTAGTG+GGG | - | 24162:13348-13367 | MS.gene064524:intergenic | 40.0% | |
| TTCTCCACAAGCTCTTTCAA+TGG | - | 24162:11556-11575 | MS.gene064524:intergenic | 40.0% | |
| TTCTTACCCTCCAGATTCTA+AGG | - | 24162:12640-12659 | MS.gene064524:intergenic | 40.0% | |
| TTGCAACTCCATCATCATCT+TGG | + | 24162:13354-13373 | MS.gene064524:intron | 40.0% | |
| TTGCAACTGTGATTCACGAT+GGG | + | 24162:13452-13471 | MS.gene064524:CDS | 40.0% | |
| TTTGCAACTGTGATTCACGA+TGG | + | 24162:13451-13470 | MS.gene064524:CDS | 40.0% | |
| ! | AGGTTTGAGACTATACCAGA+TGG | + | 24162:11454-11473 | MS.gene064524:CDS | 40.0% |
| ! | GATAACAATGATTTGGCGAC+GGG | + | 24162:13474-13493 | MS.gene064524:CDS | 40.0% |
| ! | GCATTGCAGAGCAACAATTT+TGG | + | 24162:11665-11684 | MS.gene064524:CDS | 40.0% |
| ! | GGATAACAATGATTTGGCGA+CGG | + | 24162:13473-13492 | MS.gene064524:CDS | 40.0% |
| ! | GTAGCATTTTCATCTGATGG+TGG | - | 24162:11484-11503 | MS.gene064524:intergenic | 40.0% |
| !! | AATGCTACACAAAGCATTGG+TGG | + | 24162:11496-11515 | MS.gene064524:CDS | 40.0% |
| !! | AGATTAAGGTGGGTTTTGTG+AGG | - | 24162:13305-13324 | MS.gene064524:intergenic | 40.0% |
| !! | GATGATGGAGTTGCAATTAG+TGG | - | 24162:13350-13369 | MS.gene064524:intergenic | 40.0% |
| ATCACAGTTGCAAATGGCGT+TGG | - | 24162:13445-13464 | MS.gene064524:intergenic | 45.0% | |
| CAACACGATGACTTCACAAG+AGG | - | 24162:12317-12336 | MS.gene064524:intergenic | 45.0% | |
| CCGTTTGCAACCATTCATGA+TGG | + | 24162:13391-13410 | MS.gene064524:intron | 45.0% | |
| CTCTTCCCTTAGAATCTGGA+GGG | + | 24162:12631-12650 | MS.gene064524:intron | 45.0% | |
| GAGTTGCAATTAGTGGGGAT+GGG | - | 24162:13343-13362 | MS.gene064524:intergenic | 45.0% | |
| GCGACGGGAAATTGAATTTG+TGG | + | 24162:13489-13508 | MS.gene064524:CDS | 45.0% | |
| GGATAACAGTGATTCGCGAT+GGG | + | 24162:13413-13432 | MS.gene064524:intron | 45.0% | |
| TGGTCCATTGAAAGAGCTTG+TGG | + | 24162:11549-11568 | MS.gene064524:CDS | 45.0% | |
| TGTGGAGACCAAGATGATGA+TGG | - | 24162:13365-13384 | MS.gene064524:intergenic | 45.0% | |
| TGTGTACCATTTCCAGCACA+AGG | + | 24162:11292-11311 | MS.gene064524:CDS | 45.0% | |
| !! | AGCATTGGTGGACTTGTTGA+AGG | + | 24162:11508-11527 | MS.gene064524:CDS | 45.0% |
| !! | GTGGACTTGTTGAAGGTTGT+AGG | + | 24162:11515-11534 | MS.gene064524:CDS | 45.0% |
| !! | GTTTAAATTTATTTATTATT+CGG | + | 24162:12386-12405 | MS.gene064524:intron | 5.0% |
| !! | TTTAAATTTATTTATTATTC+GGG | + | 24162:12387-12406 | MS.gene064524:intron | 5.0% |
| !!! | ATTTTTATTATCATTATTTA+TGG | - | 24162:12164-12183 | MS.gene064524:intergenic | 5.0% |
| ACGTGACCTTGTGCTGGAAA+TGG | - | 24162:11301-11320 | MS.gene064524:intergenic | 50.0% | |
| AGAGAATCTGCTCCCCTAGA+TGG | - | 24162:13104-13123 | MS.gene064524:intergenic | 50.0% | |
| CCTCTTCCCTTAGAATCTGG+AGG | + | 24162:12630-12649 | MS.gene064524:intron | 50.0% | |
| CTCCTTGGATGTCCATCTAG+GGG | + | 24162:13089-13108 | MS.gene064524:intron | 50.0% | |
| GCTCCTTGGATGTCCATCTA+GGG | + | 24162:13088-13107 | MS.gene064524:intron | 50.0% | |
| GGAGTTGCAATTAGTGGGGA+TGG | - | 24162:13344-13363 | MS.gene064524:intergenic | 50.0% | |
| GGGATAACAGTGATTCGCGA+TGG | + | 24162:13412-13431 | MS.gene064524:intron | 50.0% | |
| GGTCCTCTTCCCTTAGAATC+TGG | + | 24162:12627-12646 | MS.gene064524:intron | 50.0% | |
| TGAACGGCTGAGATATGCCA+CGG | - | 24162:13154-13173 | MS.gene064524:intergenic | 50.0% | |
| TGAATGGTTGCAAACGGCGT+TGG | - | 24162:13388-13407 | MS.gene064524:intergenic | 50.0% | |
| TTTGGACTGCCTCTGCTTGT+GGG | + | 24162:11683-11702 | MS.gene064524:CDS | 50.0% | |
| ! | CCTCCAGATTCTAAGGGAAG+AGG | - | 24162:12633-12652 | MS.gene064524:intergenic | 50.0% |
| ! | TTTTCTCCAGTTCTCTCCCG+TGG | + | 24162:13134-13153 | MS.gene064524:intron | 50.0% |
| ! | TTTTGGACTGCCTCTGCTTG+TGG | + | 24162:11682-11701 | MS.gene064524:CDS | 50.0% |
| !! | TCTGATGGTGGCAAACCATC+TGG | - | 24162:11472-11491 | MS.gene064524:intergenic | 50.0% |
| !!! | TGGCTTGTCGTTTTGCCCTT+TGG | + | 24162:13219-13238 | MS.gene064524:intron | 50.0% |
| CTCCCCTAGATGGACATCCA+AGG | - | 24162:13094-13113 | MS.gene064524:intergenic | 55.0% | |
| GAACGGCTGAGATATGCCAC+GGG | - | 24162:13153-13172 | MS.gene064524:intergenic | 55.0% | |
| GATATGCCACGGGAGAGAAC+TGG | - | 24162:13143-13162 | MS.gene064524:intergenic | 55.0% | |
| GGCTCCTTGGATGTCCATCT+AGG | + | 24162:13087-13106 | MS.gene064524:intron | 55.0% | |
| GGGTTTACGTGACCTTGTGC+TGG | - | 24162:11307-11326 | MS.gene064524:intergenic | 55.0% | |
| TCCCATCAACCCACAAGCAG+AGG | - | 24162:11695-11714 | MS.gene064524:intergenic | 55.0% | |
| ! | TGCCTCTGCTTGTGGGTTGA+TGG | + | 24162:11690-11709 | MS.gene064524:CDS | 55.0% |
| !! | GCCTCTGCTTGTGGGTTGAT+GGG | + | 24162:11691-11710 | MS.gene064524:CDS | 55.0% |
| !! | GGTTGCAAACGGCGTTGGTG+TGG | - | 24162:13383-13402 | MS.gene064524:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 24162 | gene | 11247 | 13537 | 11247 | ID=MS.gene064524 |
| 24162 | mRNA | 11247 | 13537 | 11247 | ID=MS.gene064524.t1;Parent=MS.gene064524 |
| 24162 | exon | 11247 | 11763 | 11247 | ID=MS.gene064524.t1.exon1;Parent=MS.gene064524.t1 |
| 24162 | CDS | 11247 | 11763 | 11247 | ID=cds.MS.gene064524.t1;Parent=MS.gene064524.t1 |
| 24162 | exon | 13422 | 13537 | 13422 | ID=MS.gene064524.t1.exon2;Parent=MS.gene064524.t1 |
| 24162 | CDS | 13422 | 13537 | 13422 | ID=cds.MS.gene064524.t1;Parent=MS.gene064524.t1 |
| Gene Sequence |
| Protein sequence |
