Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065011.t1 | RHN82564.1 | 97.4 | 387 | 10 | 0 | 180 | 566 | 62 | 448 | 1.00E-210 | 743 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065011.t1 | Q5RC80 | 42.2 | 393 | 187 | 9 | 184 | 565 | 149 | 512 | 1.6e-68 | 261.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065011.t1 | A0A396JZD2 | 97.4 | 387 | 10 | 0 | 180 | 566 | 62 | 448 | 7.2e-211 | 743.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene065011 | 0.801867 | 7.35E-49 | -1.69E-46 |
| MS.gene049993 | MS.gene065011 | 0.807836 | 4.16E-50 | -1.69E-46 |
| MS.gene050787 | MS.gene065011 | 0.809778 | 1.60E-50 | -1.69E-46 |
| MS.gene051525 | MS.gene065011 | 0.813512 | 2.47E-51 | -1.69E-46 |
| MS.gene052011 | MS.gene065011 | -0.846147 | 2.61E-59 | -1.69E-46 |
| MS.gene053176 | MS.gene065011 | 0.841001 | 6.19E-58 | -1.69E-46 |
| MS.gene054183 | MS.gene065011 | 0.836474 | 9.16E-57 | -1.69E-46 |
| MS.gene054548 | MS.gene065011 | 0.829553 | 4.83E-55 | -1.69E-46 |
| MS.gene054920 | MS.gene065011 | 0.801959 | 7.04E-49 | -1.69E-46 |
| MS.gene055358 | MS.gene065011 | 0.80381 | 2.92E-49 | -1.69E-46 |
| MS.gene055488 | MS.gene065011 | -0.810633 | 1.05E-50 | -1.69E-46 |
| MS.gene056297 | MS.gene065011 | 0.902893 | 6.08E-79 | -1.69E-46 |
| MS.gene059247 | MS.gene065011 | 0.809991 | 1.44E-50 | -1.69E-46 |
| MS.gene059609 | MS.gene065011 | 0.810974 | 8.82E-51 | -1.69E-46 |
| MS.gene061114 | MS.gene065011 | -0.851302 | 9.69E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene86296 | MS.gene065011 | PPI |
| MS.gene54070 | MS.gene065011 | PPI |
| MS.gene021573 | MS.gene065011 | PPI |
| MS.gene09281 | MS.gene065011 | PPI |
| MS.gene015893 | MS.gene065011 | PPI |
| MS.gene08963 | MS.gene065011 | PPI |
| MS.gene08808 | MS.gene065011 | PPI |
| MS.gene023498 | MS.gene065011 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065011.t1 | MTR_8g092550 | 52.623 | 591 | 226 | 16 | 2 | 564 | 1 | 565 | 0.0 | 527 |
| MS.gene065011.t1 | MTR_3g095230 | 64.179 | 402 | 131 | 7 | 164 | 562 | 192 | 583 | 6.51e-179 | 518 |
| MS.gene065011.t1 | MTR_3g095230 | 64.631 | 393 | 126 | 7 | 164 | 553 | 192 | 574 | 8.08e-176 | 509 |
| MS.gene065011.t1 | MTR_7g094660 | 23.605 | 233 | 159 | 7 | 174 | 398 | 626 | 847 | 2.23e-12 | 70.5 |
| MS.gene065011.t1 | MTR_6g040190 | 31.126 | 151 | 86 | 3 | 199 | 348 | 36 | 169 | 4.15e-12 | 69.3 |
| MS.gene065011.t1 | MTR_7g096260 | 24.066 | 241 | 163 | 8 | 174 | 406 | 471 | 699 | 1.93e-11 | 67.4 |
| MS.gene065011.t1 | MTR_7g096260 | 24.066 | 241 | 163 | 8 | 174 | 406 | 485 | 713 | 2.32e-11 | 67.0 |
| MS.gene065011.t1 | MTR_1g020080 | 28.333 | 180 | 119 | 6 | 189 | 365 | 191 | 363 | 4.33e-11 | 65.5 |
| MS.gene065011.t1 | MTR_1g019150 | 25.146 | 171 | 110 | 2 | 179 | 348 | 23 | 176 | 6.98e-11 | 65.5 |
| MS.gene065011.t1 | MTR_4g085540 | 26.036 | 169 | 106 | 3 | 189 | 355 | 35 | 186 | 7.28e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065011.t1 | AT2G16940 | 54.470 | 604 | 191 | 13 | 2 | 566 | 1 | 559 | 0.0 | 538 |
| MS.gene065011.t1 | AT2G16940 | 51.380 | 652 | 186 | 14 | 2 | 566 | 1 | 608 | 0.0 | 536 |
| MS.gene065011.t1 | AT2G16940 | 52.418 | 641 | 185 | 16 | 2 | 566 | 1 | 597 | 0.0 | 534 |
| MS.gene065011.t1 | AT2G16940 | 68.704 | 409 | 109 | 6 | 167 | 566 | 20 | 418 | 0.0 | 527 |
| MS.gene065011.t1 | AT2G16940 | 68.704 | 409 | 109 | 6 | 167 | 566 | 20 | 418 | 0.0 | 527 |
| MS.gene065011.t1 | AT5G09880 | 51.957 | 562 | 226 | 11 | 2 | 559 | 1 | 522 | 1.52e-166 | 484 |
| MS.gene065011.t1 | AT4G27000 | 30.435 | 184 | 120 | 4 | 184 | 365 | 169 | 346 | 3.71e-14 | 75.1 |
| MS.gene065011.t1 | AT1G48920 | 29.609 | 179 | 114 | 6 | 188 | 359 | 297 | 470 | 1.50e-13 | 73.9 |
| MS.gene065011.t1 | AT5G54900 | 26.562 | 192 | 134 | 3 | 176 | 365 | 142 | 328 | 1.90e-13 | 72.8 |
| MS.gene065011.t1 | AT4G34110 | 28.994 | 169 | 101 | 3 | 189 | 355 | 37 | 188 | 8.01e-13 | 71.6 |
| MS.gene065011.t1 | AT4G19610 | 24.123 | 228 | 156 | 5 | 180 | 400 | 593 | 810 | 3.41e-12 | 70.1 |
| MS.gene065011.t1 | AT4G26650 | 29.341 | 167 | 112 | 4 | 178 | 339 | 2 | 167 | 4.10e-11 | 65.9 |
| MS.gene065011.t1 | AT4G26650 | 29.341 | 167 | 112 | 4 | 178 | 339 | 5 | 170 | 4.24e-11 | 65.9 |
| MS.gene065011.t1 | AT1G11650 | 25.140 | 179 | 127 | 3 | 189 | 365 | 156 | 329 | 7.76e-11 | 64.7 |
| MS.gene065011.t1 | AT5G51120 | 35.345 | 116 | 66 | 3 | 264 | 378 | 120 | 227 | 9.56e-11 | 63.2 |
Find 153 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAATTTAGGCCCTTATTC+TGG | 0.109164 | 1.2:-83531915 | MS.gene065011:CDS |
| AATGATCACCGCAAGCTTTA+TGG | 0.144465 | 1.2:-83527341 | MS.gene065011:intron |
| AAGAACTGTGTTTGCTTATC+AGG | 0.185609 | 1.2:-83533834 | MS.gene065011:intron |
| ACAGTTCTTTGATCTCTTTC+AGG | 0.242899 | 1.2:+83533848 | None:intergenic |
| GCGAGATGTTCGGTTGATTA+TGG | 0.243482 | 1.2:-83533219 | MS.gene065011:CDS |
| TTCCCATTGCTTGTAGATTA+AGG | 0.251379 | 1.2:+83527864 | None:intergenic |
| CCAAGAACTCATTTGCTATC+TGG | 0.252789 | 1.2:+83527193 | None:intergenic |
| CTTTCAGGTCAACCTCTTCT+TGG | 0.289755 | 1.2:-83532017 | MS.gene065011:CDS |
| TTGCAGTATGGTTGGTTTGC+TGG | 0.290107 | 1.2:-83527912 | MS.gene065011:intron |
| GGAATCGATCCTCGTATAAC+TGG | 0.293028 | 1.2:+83527215 | None:intergenic |
| GAAGCAGAATGCTCCAAGTT+TGG | 0.294926 | 1.2:-83527565 | MS.gene065011:CDS |
| ATTGGGCATTGCAAAGGTTT+TGG | 0.296396 | 1.2:-83531514 | MS.gene065011:CDS |
| CCCATGGCAATAGCGCTTTC+AGG | 0.304225 | 1.2:-83532032 | MS.gene065011:CDS |
| CAGCGAAGCAAAAGCAGTTC+TGG | 0.307938 | 1.2:-83536764 | MS.gene065011:CDS |
| GAAATTTAGGCCCTTATTCT+GGG | 0.320135 | 1.2:-83531914 | MS.gene065011:CDS |
| AGGAATGGCAAGGGACTTAA+AGG | 0.323597 | 1.2:-83536681 | MS.gene065011:CDS |
| TCTGTTGCTAACGGGCCTTC+TGG | 0.328512 | 1.2:-83531936 | MS.gene065011:CDS |
| CCACCTGGCATTCCAACTCC+TGG | 0.330402 | 1.2:+83527812 | None:intergenic |
| CAGACGGCATAAAGAGAAAA+AGG | 0.339356 | 1.2:-83533897 | MS.gene065011:CDS |
| GTTTAGGTGTTTGAAGCATT+TGG | 0.350751 | 1.2:-83531571 | MS.gene065011:intron |
| ATGGGGATAGGAAGCGAGAT+AGG | 0.353260 | 1.2:-83536895 | MS.gene065011:CDS |
| GAAGGAACCAGACTTTGATT+TGG | 0.363169 | 1.2:-83527605 | MS.gene065011:CDS |
| AAGCAGAATGCTCCAAGTTT+GGG | 0.375980 | 1.2:-83527564 | MS.gene065011:CDS |
| CAAGAATTCGGCGGAAATAC+TGG | 0.377273 | 1.2:-83529220 | MS.gene065011:CDS |
| AACGGGCCTTCTGGAAATTT+AGG | 0.380199 | 1.2:-83531927 | MS.gene065011:CDS |
| AAGATCAGCTTCAGTAATAC+TGG | 0.384484 | 1.2:+83531857 | None:intergenic |
| GTTCATCTCGTCACCGTTCA+TGG | 0.390155 | 1.2:-83536967 | MS.gene065011:CDS |
| CTGTGCACTTATTGCAGATT+GGG | 0.394110 | 1.2:+83527396 | None:intergenic |
| TTAACATCCAAATCAAAGTC+TGG | 0.396360 | 1.2:+83527598 | None:intergenic |
| CAAGAACTCATTTGCTATCT+GGG | 0.400356 | 1.2:+83527194 | None:intergenic |
| TCCGATGGCTTCACCATCAC+TGG | 0.400948 | 1.2:+83531990 | None:intergenic |
| TTACATGGAAGATGGTTTGC+AGG | 0.407022 | 1.2:-83527367 | MS.gene065011:CDS |
| TGCTCGGGAAGAGGCATTCA+AGG | 0.409408 | 1.2:+83528045 | None:intergenic |
| GTTAAAGAATATGTTTGATC+CGG | 0.411016 | 1.2:-83527720 | MS.gene065011:CDS |
| ACGGTGAAGAGAAGAATAGA+AGG | 0.412946 | 1.2:-83536865 | MS.gene065011:CDS |
| TGCAGTATGGTTGGTTTGCT+GGG | 0.416126 | 1.2:-83527911 | MS.gene065011:intron |
| TTGAATAGCCAGTTGGAGAT+TGG | 0.425004 | 1.2:-83530754 | MS.gene065011:CDS |
| CACCTGGCATTCCAACTCCT+GGG | 0.427701 | 1.2:+83527813 | None:intergenic |
| CTTCCTATCCCCATTGCCCT+TGG | 0.429709 | 1.2:+83536904 | None:intergenic |
| ATAGAAGTTCCAAGGGCAAT+GGG | 0.440870 | 1.2:-83536913 | MS.gene065011:CDS |
| TCTCTTTCAGGATCAATCTC+AGG | 0.446666 | 1.2:+83533860 | None:intergenic |
| ACCCCAGGAGTTGGAATGCC+AGG | 0.447356 | 1.2:-83527815 | MS.gene065011:CDS |
| GTAAATAGAGATAGAGAAAG+AGG | 0.447784 | 1.2:-83536701 | MS.gene065011:CDS |
| TTCTATCTCTTTCAACATCC+CGG | 0.447920 | 1.2:+83536828 | None:intergenic |
| CAATGTCATCAAGAGGCATC+TGG | 0.449507 | 1.2:+83531533 | None:intergenic |
| ATTTCCAGGTGCGAGATGTT+CGG | 0.451143 | 1.2:-83533229 | MS.gene065011:intron |
| TCAAGACGTTCTAAAGGTGT+TGG | 0.457560 | 1.2:-83533188 | MS.gene065011:CDS |
| AGATGCCTCTTGATGACATT+GGG | 0.460702 | 1.2:-83531531 | MS.gene065011:CDS |
| TCCTCCCACCAATCTCCAAC+TGG | 0.461997 | 1.2:+83530746 | None:intergenic |
| AATTCTGTTGTCAACAATAC+AGG | 0.465091 | 1.2:-83527887 | MS.gene065011:CDS |
| ATAGAGAGATGAGTCGTGAC+AGG | 0.465228 | 1.2:-83536724 | MS.gene065011:CDS |
| GACTTGTCAGCATTTGAACT+TGG | 0.465269 | 1.2:+83527783 | None:intergenic |
| GCTGTGCACTTATTGCAGAT+TGG | 0.469463 | 1.2:+83527395 | None:intergenic |
| TGCAAACCATCTTCCATGTA+AGG | 0.469787 | 1.2:+83527369 | None:intergenic |
| CAATCTGGAATGCAAGAATT+CGG | 0.473861 | 1.2:-83529232 | MS.gene065011:CDS |
| CAAGACGTTCTAAAGGTGTT+GGG | 0.475156 | 1.2:-83533187 | MS.gene065011:intron |
| CTTATTCCCACCCCAGGAGT+TGG | 0.477168 | 1.2:-83527824 | MS.gene065011:CDS |
| TCAGCTGTTACTGATCAATC+TGG | 0.478932 | 1.2:-83529247 | MS.gene065011:CDS |
| CTACAGCATCTGTTGCTAAC+GGG | 0.479490 | 1.2:-83531944 | MS.gene065011:CDS |
| ATGATGATGATGTTGATCAT+TGG | 0.482649 | 1.2:-83537015 | MS.gene065011:CDS |
| GGCCTTAATCTACAAGCAAT+GGG | 0.483020 | 1.2:-83527866 | MS.gene065011:CDS |
| GAAAGAGATAGAAGGAATCG+AGG | 0.484216 | 1.2:-83536818 | MS.gene065011:CDS |
| AGCATTACTCATGCAGAAGT+TGG | 0.485791 | 1.2:-83528026 | MS.gene065011:CDS |
| AAATCTTAAGTAGACAAATC+CGG | 0.486003 | 1.2:+83527426 | None:intergenic |
| ATCGAGGGAGTGAGAGTGAA+CGG | 0.494840 | 1.2:-83536802 | MS.gene065011:CDS |
| GCGCCGATTGTATCAATAGT+AGG | 0.495158 | 1.2:+83527761 | None:intergenic |
| AGTGCACAGCGGGCCTTACA+TGG | 0.497162 | 1.2:-83527382 | MS.gene065011:CDS |
| CATGAGTAATGCTCGGGAAG+AGG | 0.500452 | 1.2:+83528036 | None:intergenic |
| ATCTGCAATAAGTGCACAGC+GGG | 0.503256 | 1.2:-83527392 | MS.gene065011:CDS |
| TATGAGTTCTTCTCAAGGGC+TGG | 0.503681 | 1.2:-83533694 | MS.gene065011:CDS |
| ACCTGAAAGCGCTATTGCCA+TGG | 0.505680 | 1.2:+83532031 | None:intergenic |
| AGGAACCAGATAGAGAAAAC+AGG | 0.508947 | 1.2:-83536661 | MS.gene065011:intron |
| AGGCCTTAATCTACAAGCAA+TGG | 0.510829 | 1.2:-83527867 | MS.gene065011:CDS |
| GTTCCAAGGGCAATGGGGAT+AGG | 0.513112 | 1.2:-83536907 | MS.gene065011:CDS |
| GAGTGAGAGTGAACGGGAGA+AGG | 0.513494 | 1.2:-83536795 | MS.gene065011:CDS |
| TTCACAGATTTCTCTTAAAG+CGG | 0.516431 | 1.2:-83533731 | MS.gene065011:intron |
| TCGAGGGAGTGAGAGTGAAC+GGG | 0.517478 | 1.2:-83536801 | MS.gene065011:CDS |
| AATAGCCAGTTGGAGATTGG+TGG | 0.519548 | 1.2:-83530751 | MS.gene065011:CDS |
| AGCGGGCCTTACATGGAAGA+TGG | 0.519802 | 1.2:-83527375 | MS.gene065011:CDS |
| TGGCATTCCAACTCCTGGGG+TGG | 0.521399 | 1.2:+83527817 | None:intergenic |
| TCTGTGAGCAGGAGGAGTGC+CGG | 0.524448 | 1.2:-83527445 | MS.gene065011:intron |
| TGATGATGAAGGTGGTGGAT+TGG | 0.525562 | 1.2:-83529188 | MS.gene065011:intron |
| CCTGAAAGCGCTATTGCCAT+GGG | 0.527636 | 1.2:+83532032 | None:intergenic |
| AAATTTAGGCCCTTATTCTG+GGG | 0.528621 | 1.2:-83531913 | MS.gene065011:CDS |
| TTTAACAATAAGCATTCACT+TGG | 0.530647 | 1.2:+83527737 | None:intergenic |
| GAGTCAACATAGAAGTTCCA+AGG | 0.532465 | 1.2:-83536921 | MS.gene065011:CDS |
| CGCAATTCAAGACGTTCTAA+AGG | 0.532669 | 1.2:-83533194 | MS.gene065011:CDS |
| CATAGAAGTTCCAAGGGCAA+TGG | 0.533745 | 1.2:-83536914 | MS.gene065011:CDS |
| AGTCCTACTATTGATACAAT+CGG | 0.537828 | 1.2:-83527764 | MS.gene065011:CDS |
| AAAGAGATAGAAGGAATCGA+GGG | 0.540092 | 1.2:-83536817 | MS.gene065011:CDS |
| CACCGTTCATGGTCTAGAGA+TGG | 0.540746 | 1.2:-83536956 | MS.gene065011:CDS |
| GAATCGATCCTCGTATAACT+GGG | 0.541805 | 1.2:+83527216 | None:intergenic |
| GGGATGTTGAAAGAGATAGA+AGG | 0.542287 | 1.2:-83536826 | MS.gene065011:CDS |
| GATGACATTGGGCATTGCAA+AGG | 0.544112 | 1.2:-83531520 | MS.gene065011:CDS |
| TATGTTTGATCCGGAAAATG+AGG | 0.544620 | 1.2:-83527711 | MS.gene065011:intron |
| GAAGGGAGAGAGACAGAGAC+CGG | 0.545866 | 1.2:-83536847 | MS.gene065011:CDS |
| ACTTCTGCATGAGTAATGCT+CGG | 0.546350 | 1.2:+83528029 | None:intergenic |
| AATTTAGGCCCTTATTCTGG+GGG | 0.547956 | 1.2:-83531912 | MS.gene065011:CDS |
| CGGTGAAGAGAAGAATAGAA+GGG | 0.548083 | 1.2:-83536864 | MS.gene065011:CDS |
| TAGAGATAGAGAAAGAGGAA+TGG | 0.552230 | 1.2:-83536696 | MS.gene065011:CDS |
| GTTCTTCTCAAGGGCTGGCA+AGG | 0.552502 | 1.2:-83533689 | MS.gene065011:intron |
| GGAGTTGGAATGCCAGGTGG+AGG | 0.553313 | 1.2:-83527809 | MS.gene065011:CDS |
| GGCATTCCAACTCCTGGGGT+GGG | 0.554138 | 1.2:+83527818 | None:intergenic |
| TTACTGAAGCTGATCTTCGT+AGG | 0.557966 | 1.2:-83531851 | MS.gene065011:CDS |
| TCTTCTTGGTCAACCAGTGA+TGG | 0.558447 | 1.2:-83532003 | MS.gene065011:CDS |
| CGATGTCATGTCTGTCCCCA+TGG | 0.560163 | 1.2:-83532048 | MS.gene065011:CDS |
| AGTTCATAGTCGAAACTTGA+AGG | 0.560716 | 1.2:-83537044 | MS.gene065011:CDS |
| CAGATGCCTCTTGATGACAT+TGG | 0.560834 | 1.2:-83531532 | MS.gene065011:CDS |
| AAGCATTCAAAATCTAGAGA+TGG | 0.565325 | 1.2:-83536989 | MS.gene065011:CDS |
| TGGGGATAGGAAGCGAGATA+GGG | 0.569142 | 1.2:-83536894 | MS.gene065011:CDS |
| GTAGCTCTTATTCCCACCCC+AGG | 0.569618 | 1.2:-83527830 | MS.gene065011:CDS |
| CTTCTGCATGAGTAATGCTC+GGG | 0.570793 | 1.2:+83528030 | None:intergenic |
| CTTTAGAACGTCTTGAATTG+CGG | 0.570798 | 1.2:+83533195 | None:intergenic |
| ATCGCAGTGGCATTGCATCA+AGG | 0.573059 | 1.2:-83528003 | MS.gene065011:intron |
| TACTGAAGCTGATCTTCGTA+GGG | 0.577585 | 1.2:-83531850 | MS.gene065011:intron |
| CGTTTATGAGTTCTTCTCAA+GGG | 0.577829 | 1.2:-83533698 | MS.gene065011:CDS |
| GATTGGTGGGAGGACAATCA+AGG | 0.581844 | 1.2:-83530737 | MS.gene065011:intron |
| ACCTGGCATTCCAACTCCTG+GGG | 0.582546 | 1.2:+83527814 | None:intergenic |
| TGAACTTGGAGACCTCCACC+TGG | 0.583833 | 1.2:+83527797 | None:intergenic |
| CTCCATCTCTAGACCATGAA+CGG | 0.584768 | 1.2:+83536954 | None:intergenic |
| TCTACAGCATCTGTTGCTAA+CGG | 0.585181 | 1.2:-83531945 | MS.gene065011:CDS |
| ATTGATGATGATGAAGGTGG+TGG | 0.588755 | 1.2:-83529193 | MS.gene065011:CDS |
| CAATGCCCAATGTCATCAAG+AGG | 0.592641 | 1.2:+83531526 | None:intergenic |
| ACCAGTGATGGTGAAGCCAT+CGG | 0.593462 | 1.2:-83531991 | MS.gene065011:CDS |
| ATAGCCAGTTGGAGATTGGT+GGG | 0.598010 | 1.2:-83530750 | MS.gene065011:CDS |
| TTCTGAACCTAAGAGTGGTG+TGG | 0.605344 | 1.2:-83537092 | MS.gene065011:CDS |
| GGTGCAAGAAGGCTCTATGT+TGG | 0.610158 | 1.2:-83531891 | MS.gene065011:CDS |
| TAGAGAGATGAGTCGTGACA+GGG | 0.610522 | 1.2:-83536723 | MS.gene065011:CDS |
| ACGTTTATGAGTTCTTCTCA+AGG | 0.612320 | 1.2:-83533699 | MS.gene065011:CDS |
| TAGAGAAAGAGGAATGGCAA+GGG | 0.614110 | 1.2:-83536690 | MS.gene065011:CDS |
| GGTGATATTGATGATGATGA+AGG | 0.615807 | 1.2:-83529199 | MS.gene065011:CDS |
| CAAAATTCTGAACCTAAGAG+TGG | 0.616219 | 1.2:-83537097 | MS.gene065011:CDS |
| ATAGAGAAAGAGGAATGGCA+AGG | 0.620234 | 1.2:-83536691 | MS.gene065011:CDS |
| GTGGGAATAAGAGCTACTGC+TGG | 0.624602 | 1.2:+83527836 | None:intergenic |
| AAGCGAGATAGGGATAGAGA+CGG | 0.629250 | 1.2:-83536884 | MS.gene065011:CDS |
| GAAGCAAAAGCAGTTCTGGA+AGG | 0.631773 | 1.2:-83536760 | MS.gene065011:CDS |
| ATCACTGGTTGACCAAGAAG+AGG | 0.635615 | 1.2:+83532005 | None:intergenic |
| AAGGGAGAGAGACAGAGACC+GGG | 0.638082 | 1.2:-83536846 | MS.gene065011:CDS |
| TAAGGGCCTAAATTTCCAGA+AGG | 0.648555 | 1.2:+83531921 | None:intergenic |
| AGTCAACATAGAAGTTCCAA+GGG | 0.655074 | 1.2:-83536920 | MS.gene065011:CDS |
| TCAGAGCTTGAATAGCCAGT+TGG | 0.660361 | 1.2:-83530761 | MS.gene065011:CDS |
| ATGGTCTAGAGATGGAGACA+AGG | 0.670604 | 1.2:-83536948 | MS.gene065011:CDS |
| CCAGGAGTTGGAATGCCAGG+TGG | 0.674750 | 1.2:-83527812 | MS.gene065011:CDS |
| GATATTGATGATGATGAAGG+TGG | 0.683755 | 1.2:-83529196 | MS.gene065011:CDS |
| GCCAGTTGGAGATTGGTGGG+AGG | 0.684582 | 1.2:-83530747 | MS.gene065011:CDS |
| TCTGGAATGCAAGAATTCGG+CGG | 0.689367 | 1.2:-83529229 | MS.gene065011:CDS |
| ATGCAGAAGTTGGATCGCAG+TGG | 0.693345 | 1.2:-83528016 | MS.gene065011:CDS |
| TATGTGTACCATAAAGCTTG+CGG | 0.707127 | 1.2:+83527333 | None:intergenic |
| TAGAAGTTCCAAGGGCAATG+GGG | 0.709769 | 1.2:-83536912 | MS.gene065011:CDS |
| AATCGATCCTCGTATAACTG+GGG | 0.710279 | 1.2:+83527217 | None:intergenic |
| CTGAAAGCGCTATTGCCATG+GGG | 0.726318 | 1.2:+83532033 | None:intergenic |
| GTAGGTTCCCCAGTTATACG+AGG | 0.752635 | 1.2:-83527224 | MS.gene065011:intron |
| AATCTGCAATAAGTGCACAG+CGG | 0.813207 | 1.2:-83527393 | MS.gene065011:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 83527201 | 83537161 | 83527201 | ID=MS.gene065011 |
| chr1.2 | mRNA | 83527201 | 83537161 | 83527201 | ID=MS.gene065011.t1;Parent=MS.gene065011 |
| chr1.2 | exon | 83536662 | 83537161 | 83536662 | ID=MS.gene065011.t1.exon1;Parent=MS.gene065011.t1 |
| chr1.2 | CDS | 83536662 | 83537161 | 83536662 | ID=cds.MS.gene065011.t1;Parent=MS.gene065011.t1 |
| chr1.2 | exon | 83533835 | 83533916 | 83533835 | ID=MS.gene065011.t1.exon2;Parent=MS.gene065011.t1 |
| chr1.2 | CDS | 83533835 | 83533916 | 83533835 | ID=cds.MS.gene065011.t1;Parent=MS.gene065011.t1 |
| chr1.2 | exon | 83533690 | 83533746 | 83533690 | ID=MS.gene065011.t1.exon3;Parent=MS.gene065011.t1 |
| chr1.2 | CDS | 83533690 | 83533746 | 83533690 | ID=cds.MS.gene065011.t1;Parent=MS.gene065011.t1 |
| chr1.2 | exon | 83533188 | 83533243 | 83533188 | ID=MS.gene065011.t1.exon4;Parent=MS.gene065011.t1 |
| chr1.2 | CDS | 83533188 | 83533243 | 83533188 | ID=cds.MS.gene065011.t1;Parent=MS.gene065011.t1 |
| chr1.2 | exon | 83531851 | 83532085 | 83531851 | ID=MS.gene065011.t1.exon5;Parent=MS.gene065011.t1 |
| chr1.2 | CDS | 83531851 | 83532085 | 83531851 | ID=cds.MS.gene065011.t1;Parent=MS.gene065011.t1 |
| chr1.2 | exon | 83531504 | 83531587 | 83531504 | ID=MS.gene065011.t1.exon6;Parent=MS.gene065011.t1 |
| chr1.2 | CDS | 83531504 | 83531587 | 83531504 | ID=cds.MS.gene065011.t1;Parent=MS.gene065011.t1 |
| chr1.2 | exon | 83530738 | 83530812 | 83530738 | ID=MS.gene065011.t1.exon7;Parent=MS.gene065011.t1 |
| chr1.2 | CDS | 83530738 | 83530812 | 83530738 | ID=cds.MS.gene065011.t1;Parent=MS.gene065011.t1 |
| chr1.2 | exon | 83529189 | 83529272 | 83529189 | ID=MS.gene065011.t1.exon8;Parent=MS.gene065011.t1 |
| chr1.2 | CDS | 83529189 | 83529272 | 83529189 | ID=cds.MS.gene065011.t1;Parent=MS.gene065011.t1 |
| chr1.2 | exon | 83528004 | 83528068 | 83528004 | ID=MS.gene065011.t1.exon9;Parent=MS.gene065011.t1 |
| chr1.2 | CDS | 83528004 | 83528068 | 83528004 | ID=cds.MS.gene065011.t1;Parent=MS.gene065011.t1 |
| chr1.2 | exon | 83527712 | 83527928 | 83527712 | ID=MS.gene065011.t1.exon10;Parent=MS.gene065011.t1 |
| chr1.2 | CDS | 83527712 | 83527928 | 83527712 | ID=cds.MS.gene065011.t1;Parent=MS.gene065011.t1 |
| chr1.2 | exon | 83527538 | 83527626 | 83527538 | ID=MS.gene065011.t1.exon11;Parent=MS.gene065011.t1 |
| chr1.2 | CDS | 83527538 | 83527626 | 83527538 | ID=cds.MS.gene065011.t1;Parent=MS.gene065011.t1 |
| chr1.2 | exon | 83527342 | 83527456 | 83527342 | ID=MS.gene065011.t1.exon12;Parent=MS.gene065011.t1 |
| chr1.2 | CDS | 83527342 | 83527456 | 83527342 | ID=cds.MS.gene065011.t1;Parent=MS.gene065011.t1 |
| chr1.2 | exon | 83527201 | 83527242 | 83527201 | ID=MS.gene065011.t1.exon13;Parent=MS.gene065011.t1 |
| chr1.2 | CDS | 83527201 | 83527242 | 83527201 | ID=cds.MS.gene065011.t1;Parent=MS.gene065011.t1 |
| Gene Sequence |
| Protein sequence |
