Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065602.t1 | XP_013467608.1 | 71.1 | 225 | 16 | 2 | 6 | 181 | 160 | 384 | 2.70E-77 | 298.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065602.t1 | Q8S9J2 | 56.9 | 225 | 48 | 2 | 6 | 181 | 161 | 385 | 5.0e-64 | 245.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065602.t1 | A0A072VU52 | 71.1 | 225 | 16 | 2 | 6 | 181 | 160 | 384 | 2.0e-77 | 298.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050277 | MS.gene065602 | 0.810604 | 1.06E-50 | -1.69E-46 |
| MS.gene050320 | MS.gene065602 | 0.837549 | 4.87E-57 | -1.69E-46 |
| MS.gene050752 | MS.gene065602 | 0.800825 | 1.20E-48 | -1.69E-46 |
| MS.gene050838 | MS.gene065602 | 0.812636 | 3.84E-51 | -1.69E-46 |
| MS.gene051746 | MS.gene065602 | 0.808143 | 3.58E-50 | -1.69E-46 |
| MS.gene051748 | MS.gene065602 | 0.813285 | 2.77E-51 | -1.69E-46 |
| MS.gene051756 | MS.gene065602 | 0.815698 | 8.09E-52 | -1.69E-46 |
| MS.gene051850 | MS.gene065602 | 0.810886 | 9.22E-51 | -1.69E-46 |
| MS.gene051903 | MS.gene065602 | 0.84568 | 3.49E-59 | -1.69E-46 |
| MS.gene053109 | MS.gene065602 | 0.847091 | 1.44E-59 | -1.69E-46 |
| MS.gene053952 | MS.gene065602 | 0.831935 | 1.26E-55 | -1.69E-46 |
| MS.gene057094 | MS.gene065602 | 0.857525 | 1.54E-62 | -1.69E-46 |
| MS.gene057234 | MS.gene065602 | 0.809462 | 1.87E-50 | -1.69E-46 |
| MS.gene059726 | MS.gene065602 | 0.801198 | 1.01E-48 | -1.69E-46 |
| MS.gene06001 | MS.gene065602 | 0.802591 | 5.22E-49 | -1.69E-46 |
| MS.gene06011 | MS.gene065602 | 0.821541 | 3.82E-53 | -1.69E-46 |
| MS.gene061145 | MS.gene065602 | 0.8039 | 2.80E-49 | -1.69E-46 |
| MS.gene06118 | MS.gene065602 | 0.817672 | 2.92E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065602.t1 | MTR_1g053270 | 71.111 | 225 | 16 | 2 | 6 | 181 | 160 | 384 | 5.93e-105 | 306 |
| MS.gene065602.t1 | MTR_1g007340 | 60.714 | 224 | 39 | 2 | 7 | 181 | 149 | 372 | 7.91e-90 | 271 |
| MS.gene065602.t1 | MTR_1g007325 | 46.222 | 225 | 52 | 3 | 6 | 181 | 32 | 236 | 2.34e-56 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065602.t1 | AT2G33840 | 57.143 | 224 | 47 | 2 | 7 | 181 | 162 | 385 | 8.34e-84 | 252 |
| MS.gene065602.t1 | AT1G28350 | 52.889 | 225 | 57 | 2 | 6 | 181 | 81 | 305 | 6.96e-73 | 232 |
| MS.gene065602.t1 | AT1G28350 | 78.218 | 101 | 22 | 0 | 7 | 107 | 460 | 560 | 3.04e-46 | 160 |
| MS.gene065602.t1 | AT1G28350 | 52.889 | 225 | 57 | 2 | 6 | 181 | 147 | 371 | 2.18e-72 | 232 |
| MS.gene065602.t1 | AT1G28350 | 78.218 | 101 | 22 | 0 | 7 | 107 | 526 | 626 | 4.53e-46 | 160 |
| MS.gene065602.t1 | AT1G28350 | 52.889 | 225 | 57 | 2 | 6 | 181 | 147 | 371 | 2.18e-72 | 232 |
| MS.gene065602.t1 | AT1G28350 | 78.218 | 101 | 22 | 0 | 7 | 107 | 526 | 626 | 4.53e-46 | 160 |
Find 38 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATACATGGATAGAATATT+TGG | 0.140591 | 1.4:+39007686 | None:intergenic |
| TTATAGGTGTAGCCAAATTA+TGG | 0.235240 | 1.4:-39007740 | MS.gene065602:intron |
| CTCTTCATCCTCCATGTAAA+TGG | 0.251052 | 1.4:+39006727 | None:intergenic |
| GTTCACTCCGTCCCATAATT+TGG | 0.255447 | 1.4:+39007728 | None:intergenic |
| ACTTCGACAAAGCCGGTTTA+AGG | 0.288565 | 1.4:+39006020 | None:intergenic |
| ACAACCTTAAAAGAATTATC+AGG | 0.345241 | 1.4:-39007844 | MS.gene065602:intron |
| TCCATGTAAATGGATGATAA+AGG | 0.366918 | 1.4:+39006737 | None:intergenic |
| CCCTTTATCATCCATTTACA+TGG | 0.371480 | 1.4:-39006738 | MS.gene065602:CDS |
| AGTATTGTGATGTTATTAAG+AGG | 0.375155 | 1.4:-39006917 | MS.gene065602:CDS |
| TATAGGTGTAGCCAAATTAT+GGG | 0.399258 | 1.4:-39007739 | MS.gene065602:intron |
| CTCTTGCCTTGTTGTAGACC+AGG | 0.402974 | 1.4:+39006778 | None:intergenic |
| TTCTCTGATCCATTCCCAAT+TGG | 0.433325 | 1.4:+39006961 | None:intergenic |
| ATAGGCCGACATCTGCCAAT+TGG | 0.434224 | 1.4:-39006976 | MS.gene065602:intron |
| CCATGTAAATGGATGATAAA+GGG | 0.439796 | 1.4:+39006738 | None:intergenic |
| TTGGAAATATGCAGCCTGTA+AGG | 0.446216 | 1.4:-39004947 | MS.gene065602:intron |
| CATACATGGATAGAATATTT+GGG | 0.452640 | 1.4:+39007687 | None:intergenic |
| TAGGCCGACATCTGCCAATT+GGG | 0.459139 | 1.4:-39006975 | MS.gene065602:CDS |
| ACATCCAGCTGACCTTAAAC+CGG | 0.474408 | 1.4:-39006032 | MS.gene065602:CDS |
| ATGTCAGCACACTGCATACA+TGG | 0.480237 | 1.4:+39007673 | None:intergenic |
| TCTATAATCAACACATTACT+TGG | 0.482569 | 1.4:+39004752 | None:intergenic |
| TTCAATGACTTCGACAAAGC+CGG | 0.497005 | 1.4:+39006013 | None:intergenic |
| GGCCAATACTCATACAGCTC+TGG | 0.512524 | 1.4:+39007893 | None:intergenic |
| TGAGTATTGGCCTCTTGTGT+TGG | 0.513849 | 1.4:-39007882 | MS.gene065602:CDS |
| AATAACATCACAATACTCTC+TGG | 0.528355 | 1.4:+39006923 | None:intergenic |
| TGCCAGAGCTGTATGAGTAT+TGG | 0.535831 | 1.4:-39007895 | MS.gene065602:CDS |
| CGACATCTGCCAATTGGGAA+TGG | 0.537270 | 1.4:-39006970 | MS.gene065602:CDS |
| AAAGCCGGTTTAAGGTCAGC+TGG | 0.544325 | 1.4:+39006028 | None:intergenic |
| CATTTACATGGAGGATGAAG+AGG | 0.563565 | 1.4:-39006726 | MS.gene065602:intron |
| TAACTCTCCGCTTTCATAGT+CGG | 0.564786 | 1.4:+39006054 | None:intergenic |
| TTACGGTGTGATAAGATGAC+GGG | 0.572281 | 1.4:+39006885 | None:intergenic |
| CATTCCCAATTGGCAGATGT+CGG | 0.585557 | 1.4:+39006971 | None:intergenic |
| GTCATTGAATAAAATTCTAG+AGG | 0.600216 | 1.4:-39005999 | MS.gene065602:intron |
| ATTACGGTGTGATAAGATGA+CGG | 0.622032 | 1.4:+39006884 | None:intergenic |
| TTGATTGCCGACTATGAAAG+CGG | 0.628637 | 1.4:-39006061 | MS.gene065602:CDS |
| TGAGCTATATCCAACACAAG+AGG | 0.641928 | 1.4:+39007872 | None:intergenic |
| TTTATCATCCATTTACATGG+AGG | 0.642941 | 1.4:-39006735 | MS.gene065602:CDS |
| GGTGTAGCCAAATTATGGGA+CGG | 0.659015 | 1.4:-39007735 | MS.gene065602:CDS |
| ATGTTACCTGGTCTACAACA+AGG | 0.665145 | 1.4:-39006784 | MS.gene065602:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAAATTAATATCATC+TGG | + | chr1.4:39005555-39005574 | None:intergenic | 10.0% |
| !! | CTTCAAAAAAAAAAATAAAA+AGG | - | chr1.4:39007316-39007335 | MS.gene065602:intron | 10.0% |
| !!! | GAATATTTTTATCTTAAAAT+AGG | - | chr1.4:39005669-39005688 | MS.gene065602:intron | 10.0% |
| !!! | GATTTCTTTTAAAAATTAAA+AGG | + | chr1.4:39006729-39006748 | None:intergenic | 10.0% |
| !!! | TTCTATTTTATACTTTTTTT+CGG | + | chr1.4:39007218-39007237 | None:intergenic | 10.0% |
| !! | AAAATCTAGTTGTTATAATA+AGG | + | chr1.4:39007050-39007069 | None:intergenic | 15.0% |
| !! | ACATTTAGTAAACAAATTAT+AGG | + | chr1.4:39007689-39007708 | None:intergenic | 15.0% |
| !! | ATGCAATATATAATAGTTAA+CGG | - | chr1.4:39007124-39007143 | MS.gene065602:intron | 15.0% |
| !! | TAAATTTGTCATTACTAAAA+AGG | - | chr1.4:39005980-39005999 | MS.gene065602:intron | 15.0% |
| !!! | CAATTTAAAATTTAATGTGA+TGG | - | chr1.4:39006829-39006848 | MS.gene065602:intron | 15.0% |
| !!! | GAAAAAAAGTATAAAATAGA+AGG | - | chr1.4:39007217-39007236 | MS.gene065602:intron | 15.0% |
| !!! | TGTGAAATTTTCTTATAAAT+AGG | + | chr1.4:39007504-39007523 | None:intergenic | 15.0% |
| !!! | TTCTTTTAAAAATTAAAAGG+AGG | + | chr1.4:39006726-39006745 | None:intergenic | 15.0% |
| !! | AAAAAAAATAAAAAGGCAAG+AGG | - | chr1.4:39007323-39007342 | MS.gene065602:intron | 20.0% |
| !! | AAAACAAAACATAACTAGAT+AGG | + | chr1.4:39006020-39006039 | None:intergenic | 20.0% |
| !! | AAACTATAAGAAACTAAGAT+GGG | + | chr1.4:39005513-39005532 | None:intergenic | 20.0% |
| !! | AAGTGAATGTGAAAATAAAA+AGG | - | chr1.4:39006283-39006302 | MS.gene065602:intron | 20.0% |
| !! | AATGCAAGCATTAATATATA+GGG | + | chr1.4:39005045-39005064 | None:intergenic | 20.0% |
| !! | ACTATCAAAGAAATAAATGA+AGG | - | chr1.4:39005172-39005191 | MS.gene065602:intron | 20.0% |
| !! | GAAACTACTACTATTATAAA+TGG | + | chr1.4:39006464-39006483 | None:intergenic | 20.0% |
| !! | TATATATAACCAAGTTTACA+TGG | - | chr1.4:39007180-39007199 | MS.gene065602:intron | 20.0% |
| !! | TTAAATATCTTATCTTACCT+TGG | - | chr1.4:39006354-39006373 | MS.gene065602:intron | 20.0% |
| !!! | AACAAACTTTGAGAAAATTA+TGG | - | chr1.4:39005267-39005286 | MS.gene065602:intron | 20.0% |
| !!! | AATAGGATCAACAAAATTTT+TGG | + | chr1.4:39007487-39007506 | None:intergenic | 20.0% |
| !!! | ACAGAAAATATTTTGAATGA+AGG | - | chr1.4:39006106-39006125 | MS.gene065602:intron | 20.0% |
| !!! | AGAAAATTTCACAACTTTTA+CGG | - | chr1.4:39007511-39007530 | MS.gene065602:intron | 20.0% |
| !!! | ATTTTGAATGAAGGAATAAA+AGG | - | chr1.4:39006115-39006134 | MS.gene065602:intron | 20.0% |
| !!! | GAAAGCATTTTCATAATAAA+AGG | + | chr1.4:39004847-39004866 | None:intergenic | 20.0% |
| !!! | GTATTTTACATGTGTTTTTA+AGG | - | chr1.4:39007621-39007640 | MS.gene065602:intron | 20.0% |
| !!! | TATTTTTCTAATTCTAAACG+AGG | + | chr1.4:39007798-39007817 | None:intergenic | 20.0% |
| !!! | TGTGATTTTATATAAGATTG+TGG | - | chr1.4:39006139-39006158 | MS.gene065602:intron | 20.0% |
| !!! | TTTACTAAATGTTTGTTTCT+TGG | - | chr1.4:39007697-39007716 | MS.gene065602:CDS | 20.0% |
| !!! | TTTTATTTTCACATTCACTT+CGG | + | chr1.4:39006283-39006302 | None:intergenic | 20.0% |
| !!! | TTTTTTAGATGGAATTTGTT+AGG | - | chr1.4:39007372-39007391 | MS.gene065602:intron | 20.0% |
| ! | AAACTTAGGTAAAATTCCTT+AGG | + | chr1.4:39005340-39005359 | None:intergenic | 25.0% |
| ! | AAACTTAGGTACAATTCTTT+AGG | - | chr1.4:39005198-39005217 | MS.gene065602:intron | 25.0% |
| ! | AAGCATTAATATATAGGGAA+AGG | + | chr1.4:39005040-39005059 | None:intergenic | 25.0% |
| ! | AATGAAAATCTTTACCAGAA+AGG | + | chr1.4:39006174-39006193 | None:intergenic | 25.0% |
| ! | ACAACCTTAAAAGAATTATC+AGG | - | chr1.4:39004819-39004838 | MS.gene065602:intron | 25.0% |
| ! | AGCATTAATATATAGGGAAA+GGG | + | chr1.4:39005039-39005058 | None:intergenic | 25.0% |
| ! | AGTAATATCGGAAAAATAGT+GGG | - | chr1.4:39007537-39007556 | MS.gene065602:intron | 25.0% |
| ! | AGTATTGTGATGTTATTAAG+AGG | - | chr1.4:39005746-39005765 | MS.gene065602:intron | 25.0% |
| ! | ATAAATGAAGGACAAAACTT+AGG | - | chr1.4:39005184-39005203 | MS.gene065602:intron | 25.0% |
| ! | ATCATGTATGGAAAAAACTT+AGG | + | chr1.4:39005354-39005373 | None:intergenic | 25.0% |
| ! | ATCTCTACTATAAATGTACT+AGG | - | chr1.4:39006746-39006765 | MS.gene065602:CDS | 25.0% |
| ! | ATTCAAAATGAGGAAATAGA+AGG | + | chr1.4:39006433-39006452 | None:intergenic | 25.0% |
| ! | CAATGCAAGCATTAATATAT+AGG | + | chr1.4:39005046-39005065 | None:intergenic | 25.0% |
| ! | CATACATGGATAGAATATTT+GGG | + | chr1.4:39004979-39004998 | None:intergenic | 25.0% |
| ! | GAAACTATAAGAAACTAAGA+TGG | + | chr1.4:39005514-39005533 | None:intergenic | 25.0% |
| ! | GATTCTTGTATTCAATTGTT+TGG | - | chr1.4:39006525-39006544 | MS.gene065602:intron | 25.0% |
| ! | GGTTATATATACTTGAACTA+TGG | + | chr1.4:39007171-39007190 | None:intergenic | 25.0% |
| ! | GTCATTGAATAAAATTCTAG+AGG | - | chr1.4:39006664-39006683 | MS.gene065602:intron | 25.0% |
| ! | TAGTAATATCGGAAAAATAG+TGG | - | chr1.4:39007536-39007555 | MS.gene065602:intron | 25.0% |
| ! | TTAATTAGTATACACCATCA+GGG | - | chr1.4:39006876-39006895 | MS.gene065602:intron | 25.0% |
| ! | TTATGGATTTGATGAAATCA+TGG | - | chr1.4:39005284-39005303 | MS.gene065602:intron | 25.0% |
| ! | TTCATGCTTTCATTCTATTT+AGG | - | chr1.4:39006558-39006577 | MS.gene065602:intron | 25.0% |
| !! | AACTAAAAATACCCTTTTGT+TGG | - | chr1.4:39005240-39005259 | MS.gene065602:intron | 25.0% |
| !! | TGATGGTGTATACTAATTAA+GGG | + | chr1.4:39006876-39006895 | None:intergenic | 25.0% |
| !!! | TGTTTCTAGTTATAAGTTAG+CGG | - | chr1.4:39007571-39007590 | MS.gene065602:intron | 25.0% |
| !!! | TTAGAAAAGCAATTTTCAAG+TGG | - | chr1.4:39007656-39007675 | MS.gene065602:intron | 25.0% |
| !!! | TTTTTTCCATACATGATACA+TGG | - | chr1.4:39005357-39005376 | MS.gene065602:intron | 25.0% |
| AAAGATGCATAAACATAACC+AGG | + | chr1.4:39006698-39006717 | None:intergenic | 30.0% | |
| AACCTAATAAAGCAAATGAG+CGG | - | chr1.4:39007408-39007427 | MS.gene065602:intron | 30.0% | |
| AATAACATCACAATACTCTC+TGG | + | chr1.4:39005743-39005762 | None:intergenic | 30.0% | |
| ACCAAGTTTACATGGAAATT+AGG | - | chr1.4:39007188-39007207 | MS.gene065602:intron | 30.0% | |
| ATTTAATGTACTCCAAGCAT+GGG | + | chr1.4:39006340-39006359 | None:intergenic | 30.0% | |
| ATTTGGCTACACCTATAAAT+TGG | + | chr1.4:39004921-39004940 | None:intergenic | 30.0% | |
| CAAAAACCATGTATCATGTA+TGG | + | chr1.4:39005366-39005385 | None:intergenic | 30.0% | |
| CAAGAGGATAGAAATGAAAT+TGG | - | chr1.4:39007339-39007358 | MS.gene065602:intron | 30.0% | |
| CCAAGTTTACATGGAAATTA+GGG | - | chr1.4:39007189-39007208 | MS.gene065602:intron | 30.0% | |
| CCATGTAAATGGATGATAAA+GGG | + | chr1.4:39005928-39005947 | None:intergenic | 30.0% | |
| CTTAATTAGTATACACCATC+AGG | - | chr1.4:39006875-39006894 | MS.gene065602:intron | 30.0% | |
| GACTAAACTGAATTTGTCTT+TGG | - | chr1.4:39007868-39007887 | MS.gene065602:CDS | 30.0% | |
| GACTGTTCAATCTTTGTATT+TGG | - | chr1.4:39006247-39006266 | MS.gene065602:intron | 30.0% | |
| GCATACATGGATAGAATATT+TGG | + | chr1.4:39004980-39004999 | None:intergenic | 30.0% | |
| GGAACTTGAAATTCAAAATG+AGG | + | chr1.4:39006443-39006462 | None:intergenic | 30.0% | |
| GTTTGGCATTTCCAATTTAT+AGG | - | chr1.4:39004907-39004926 | MS.gene065602:CDS | 30.0% | |
| GTTTGTTCTATCCAACAAAA+GGG | + | chr1.4:39005254-39005273 | None:intergenic | 30.0% | |
| TAATTAGTATACACCATCAG+GGG | - | chr1.4:39006877-39006896 | MS.gene065602:intron | 30.0% | |
| TACAGTTAATAACACATCCA+AGG | + | chr1.4:39005439-39005458 | None:intergenic | 30.0% | |
| TATAGGTGTAGCCAAATTAT+GGG | - | chr1.4:39004924-39004943 | MS.gene065602:CDS | 30.0% | |
| TATTTAATGTACTCCAAGCA+TGG | + | chr1.4:39006341-39006360 | None:intergenic | 30.0% | |
| TCATATGATCCACTGAATAA+TGG | - | chr1.4:39004865-39004884 | MS.gene065602:intron | 30.0% | |
| TCCATGTAAATGGATGATAA+AGG | + | chr1.4:39005929-39005948 | None:intergenic | 30.0% | |
| TCTTTGTATTTGGATATCAC+AGG | - | chr1.4:39006257-39006276 | MS.gene065602:intron | 30.0% | |
| TGCAATGTTAGTTGTGAAAA+TGG | - | chr1.4:39005384-39005403 | MS.gene065602:intron | 30.0% | |
| TTATAGAATGATGTCCTTGT+AGG | - | chr1.4:39005121-39005140 | MS.gene065602:intron | 30.0% | |
| TTATAGGTGTAGCCAAATTA+TGG | - | chr1.4:39004923-39004942 | MS.gene065602:CDS | 30.0% | |
| TTGTTATAATAAGGACCAGA+GGG | + | chr1.4:39007041-39007060 | None:intergenic | 30.0% | |
| TTTATCATCCATTTACATGG+AGG | - | chr1.4:39005928-39005947 | MS.gene065602:intron | 30.0% | |
| ! | AATTTCAAGTGTTCTGTTCT+TGG | - | chr1.4:39005482-39005501 | MS.gene065602:intron | 30.0% |
| ! | AGTTTGTTCTATCCAACAAA+AGG | + | chr1.4:39005255-39005274 | None:intergenic | 30.0% |
| ! | CAGAATTGTCTTATTCGTAT+TGG | - | chr1.4:39006786-39006805 | MS.gene065602:CDS | 30.0% |
| ! | CTGATGGTGTATACTAATTA+AGG | + | chr1.4:39006877-39006896 | None:intergenic | 30.0% |
| ! | CTTTTACGGTGTAGTAATAT+CGG | - | chr1.4:39007525-39007544 | MS.gene065602:intron | 30.0% |
| ! | GGAACCTGATAATTCTTTTA+AGG | + | chr1.4:39004826-39004845 | None:intergenic | 30.0% |
| !! | TTTTAATTAAATACCCCCTC+TGG | - | chr1.4:39007023-39007042 | MS.gene065602:intron | 30.0% |
| AAATACTTAAATGCCCTCAG+CGG | + | chr1.4:39007607-39007626 | None:intergenic | 35.0% | |
| ACAGTAAACTCGTTAAACCA+AGG | + | chr1.4:39006374-39006393 | None:intergenic | 35.0% | |
| ACCTAATAAAGCAAATGAGC+GGG | - | chr1.4:39007409-39007428 | MS.gene065602:intron | 35.0% | |
| AGAGCTACTAAAAAGAGTCA+AGG | - | chr1.4:39007768-39007787 | MS.gene065602:intron | 35.0% | |
| AGTAGTTTCCTAAACCATTC+TGG | - | chr1.4:39006475-39006494 | MS.gene065602:intron | 35.0% | |
| ATTACGGTGTGATAAGATGA+CGG | + | chr1.4:39005782-39005801 | None:intergenic | 35.0% | |
| ATTCCAGATCCATTATTCAG+TGG | + | chr1.4:39004877-39004896 | None:intergenic | 35.0% | |
| CAAATGAGCGGGAAAAAATT+AGG | - | chr1.4:39007420-39007439 | MS.gene065602:intron | 35.0% | |
| CCCTAATTTCCATGTAAACT+TGG | + | chr1.4:39007192-39007211 | None:intergenic | 35.0% | |
| CCCTTTATCATCCATTTACA+TGG | - | chr1.4:39005925-39005944 | MS.gene065602:intron | 35.0% | |
| GAAAGGAAATCTGGAGATTA+CGG | + | chr1.4:39005798-39005817 | None:intergenic | 35.0% | |
| GTCACTTACTAATTGATCCT+CGG | - | chr1.4:39005843-39005862 | MS.gene065602:intron | 35.0% | |
| GTTGTTATAATAAGGACCAG+AGG | + | chr1.4:39007042-39007061 | None:intergenic | 35.0% | |
| TCACTTACTAATTGATCCTC+GGG | - | chr1.4:39005844-39005863 | MS.gene065602:intron | 35.0% | |
| TCCAATATACACTAGCTGAA+AGG | + | chr1.4:39005815-39005834 | None:intergenic | 35.0% | |
| TCCTTTCAGCTAGTGTATAT+TGG | - | chr1.4:39005811-39005830 | MS.gene065602:intron | 35.0% | |
| TGTGGCTATTTATTCCTTTC+TGG | - | chr1.4:39006157-39006176 | MS.gene065602:intron | 35.0% | |
| TGTTATAATAAGGACCAGAG+GGG | + | chr1.4:39007040-39007059 | None:intergenic | 35.0% | |
| TTGGTTTAACGAGTTTACTG+TGG | - | chr1.4:39006373-39006392 | MS.gene065602:intron | 35.0% | |
| ! | AAGGGTTTGTTTGGTTCAAA+CGG | - | chr1.4:39006957-39006976 | MS.gene065602:CDS | 35.0% |
| ! | ATTCTAGAGGTAATGTTTCC+TGG | - | chr1.4:39006677-39006696 | MS.gene065602:intron | 35.0% |
| ! | TAGAGATTTTCATGGAAGGT+GGG | - | chr1.4:39006984-39007003 | MS.gene065602:intron | 35.0% |
| ! | TATCGGAAAAATAGTGGGAA+TGG | - | chr1.4:39007542-39007561 | MS.gene065602:intron | 35.0% |
| ! | TGATTTTCAGACATGTTACC+TGG | - | chr1.4:39005867-39005886 | MS.gene065602:intron | 35.0% |
| !! | CTGGAATGTTGTTTCATGTT+TGG | - | chr1.4:39004890-39004909 | MS.gene065602:intron | 35.0% |
| !! | TGAATTTGTCTTTGGTTTGC+AGG | - | chr1.4:39007876-39007895 | MS.gene065602:CDS | 35.0% |
| !! | TTGTGCTGTTTATTATGTCC+TGG | - | chr1.4:39005597-39005616 | MS.gene065602:intron | 35.0% |
| !!! | AAGCAATTTTCAAGTGGCAT+TGG | - | chr1.4:39007662-39007681 | MS.gene065602:CDS | 35.0% |
| !!! | GTGCGATGCATTTTTTTAGA+TGG | - | chr1.4:39007361-39007380 | MS.gene065602:intron | 35.0% |
| !!! | TGCTGACATTTTTTTCCTCA+AGG | - | chr1.4:39005004-39005023 | MS.gene065602:intron | 35.0% |
| !!! | TTTTTGAAGTGTTGCCTTAC+AGG | + | chr1.4:39007733-39007752 | None:intergenic | 35.0% |
| ACAAACCCTTAGTCGTCTTT+CGG | + | chr1.4:39006947-39006966 | None:intergenic | 40.0% | |
| ACACTAGCTGAAAGGAAATC+TGG | + | chr1.4:39005807-39005826 | None:intergenic | 40.0% | |
| ATGATAGATGTTCACAGCCT+TGG | - | chr1.4:39005419-39005438 | MS.gene065602:intron | 40.0% | |
| ATGTTACCTGGTCTACAACA+AGG | - | chr1.4:39005879-39005898 | MS.gene065602:intron | 40.0% | |
| CATTTACATGGAGGATGAAG+AGG | - | chr1.4:39005937-39005956 | MS.gene065602:intron | 40.0% | |
| CTCTTCATCCTCCATGTAAA+TGG | + | chr1.4:39005939-39005958 | None:intergenic | 40.0% | |
| GAAGAGGTAAGCTGCTAAAA+GGG | - | chr1.4:39005953-39005972 | MS.gene065602:intron | 40.0% | |
| GTTAACCGAAAGACGACTAA+GGG | - | chr1.4:39006939-39006958 | MS.gene065602:CDS | 40.0% | |
| GTTATAATAAGGACCAGAGG+GGG | + | chr1.4:39007039-39007058 | None:intergenic | 40.0% | |
| GTTTCCTAAACCATTCTGGT+TGG | - | chr1.4:39006479-39006498 | MS.gene065602:intron | 40.0% | |
| TAACTCTCCGCTTTCATAGT+CGG | + | chr1.4:39006612-39006631 | None:intergenic | 40.0% | |
| TGAAGAGGTAAGCTGCTAAA+AGG | - | chr1.4:39005952-39005971 | MS.gene065602:intron | 40.0% | |
| TGAGCTATATCCAACACAAG+AGG | + | chr1.4:39004794-39004813 | None:intergenic | 40.0% | |
| TGTTAACCGAAAGACGACTA+AGG | - | chr1.4:39006938-39006957 | MS.gene065602:CDS | 40.0% | |
| TTACGGTGTGATAAGATGAC+GGG | + | chr1.4:39005781-39005800 | None:intergenic | 40.0% | |
| TTCAATGACTTCGACAAAGC+CGG | + | chr1.4:39006653-39006672 | None:intergenic | 40.0% | |
| TTCTCTGATCCATTCCCAAT+TGG | + | chr1.4:39005705-39005724 | None:intergenic | 40.0% | |
| TTGGAAATATGCAGCCTGTA+AGG | - | chr1.4:39007716-39007735 | MS.gene065602:CDS | 40.0% | |
| TTTCCTTCCACAATCTTTGG+CGG | + | chr1.4:39006317-39006336 | None:intergenic | 40.0% | |
| ! | AAGACGACTAAGGGTTTGTT+TGG | - | chr1.4:39006948-39006967 | MS.gene065602:CDS | 40.0% |
| ! | AGAGATTTTCATGGAAGGTG+GGG | - | chr1.4:39006985-39007004 | MS.gene065602:intron | 40.0% |
| ! | AGGGTAGAGATTTTCATGGA+AGG | - | chr1.4:39006980-39006999 | MS.gene065602:intron | 40.0% |
| ! | GTAGAGATTTTCATGGAAGG+TGG | - | chr1.4:39006983-39007002 | MS.gene065602:intron | 40.0% |
| ! | GTTTGTTTGGTTCAAACGGA+GGG | - | chr1.4:39006961-39006980 | MS.gene065602:CDS | 40.0% |
| ! | TCCCGCTCATTTGCTTTATT+AGG | + | chr1.4:39007413-39007432 | None:intergenic | 40.0% |
| ! | TTCCTTAGGTGCTTTTCGTA+TGG | + | chr1.4:39005326-39005345 | None:intergenic | 40.0% |
| ! | TTGATTGCCGACTATGAAAG+CGG | - | chr1.4:39006602-39006621 | MS.gene065602:intron | 40.0% |
| !! | AACCATACGAAAAGCACCTA+AGG | - | chr1.4:39005321-39005340 | MS.gene065602:intron | 40.0% |
| !! | GATCCACTGAATAATGGATC+TGG | - | chr1.4:39004871-39004890 | MS.gene065602:intron | 40.0% |
| AAAGGGTGAACTTCACCTTG+AGG | + | chr1.4:39005022-39005041 | None:intergenic | 45.0% | |
| ACATCCAGCTGACCTTAAAC+CGG | - | chr1.4:39006631-39006650 | MS.gene065602:intron | 45.0% | |
| ACATCCATCACAAGCCTACA+AGG | + | chr1.4:39005138-39005157 | None:intergenic | 45.0% | |
| ACATGTCTGAAAATCACCCG+AGG | + | chr1.4:39005863-39005882 | None:intergenic | 45.0% | |
| ATATTGCCCGCCAAAGATTG+TGG | - | chr1.4:39006307-39006326 | MS.gene065602:intron | 45.0% | |
| ATGGAAGGTGGGGTAAAAGA+GGG | - | chr1.4:39006995-39007014 | MS.gene065602:intron | 45.0% | |
| ATGTCAGCACACTGCATACA+TGG | + | chr1.4:39004993-39005012 | None:intergenic | 45.0% | |
| ATGTCCTTGTAGGCTTGTGA+TGG | - | chr1.4:39005131-39005150 | MS.gene065602:intron | 45.0% | |
| CATTCCCAATTGGCAGATGT+CGG | + | chr1.4:39005695-39005714 | None:intergenic | 45.0% | |
| CCCTTTACAATAAACCCGAG+CGG | + | chr1.4:39007084-39007103 | None:intergenic | 45.0% | |
| CCGCTCGGGTTTATTGTAAA+GGG | - | chr1.4:39007081-39007100 | MS.gene065602:intron | 45.0% | |
| GAAGCCAACCAGAATGGTTT+AGG | + | chr1.4:39006486-39006505 | None:intergenic | 45.0% | |
| GGGTTTCCTTCCACAATCTT+TGG | + | chr1.4:39006320-39006339 | None:intergenic | 45.0% | |
| GGTGTAGCCAAATTATGGGA+CGG | - | chr1.4:39004928-39004947 | MS.gene065602:CDS | 45.0% | |
| GTGGAGCGTAATGCAGATAA+TGG | - | chr1.4:39006392-39006411 | MS.gene065602:intron | 45.0% | |
| GTTCACTCCGTCCCATAATT+TGG | + | chr1.4:39004938-39004957 | None:intergenic | 45.0% | |
| TCCGCTCGGGTTTATTGTAA+AGG | - | chr1.4:39007080-39007099 | MS.gene065602:intron | 45.0% | |
| TGACAACTACAGATGAAGCC+AGG | + | chr1.4:39005618-39005637 | None:intergenic | 45.0% | |
| TGCCAGAGCTGTATGAGTAT+TGG | - | chr1.4:39004768-39004787 | MS.gene065602:CDS | 45.0% | |
| TTCCTTCCACAATCTTTGGC+GGG | + | chr1.4:39006316-39006335 | None:intergenic | 45.0% | |
| ! | ACGGAGGGTAGAGATTTTCA+TGG | - | chr1.4:39006976-39006995 | MS.gene065602:intron | 45.0% |
| ! | ACTTCGACAAAGCCGGTTTA+AGG | + | chr1.4:39006646-39006665 | None:intergenic | 45.0% |
| ! | GAGCGTAATGCAGATAATGG+TGG | - | chr1.4:39006395-39006414 | MS.gene065602:intron | 45.0% |
| ! | GGTTTGTTTGGTTCAAACGG+AGG | - | chr1.4:39006960-39006979 | MS.gene065602:CDS | 45.0% |
| !! | TGAGTATTGGCCTCTTGTGT+TGG | - | chr1.4:39004781-39004800 | MS.gene065602:intron | 45.0% |
| ATAGGCCGACATCTGCCAAT+TGG | - | chr1.4:39005687-39005706 | MS.gene065602:intron | 50.0% | |
| CAGACTGAAGCCAACCAGAA+TGG | + | chr1.4:39006492-39006511 | None:intergenic | 50.0% | |
| CATGGAAGGTGGGGTAAAAG+AGG | - | chr1.4:39006994-39007013 | MS.gene065602:intron | 50.0% | |
| CGACATCTGCCAATTGGGAA+TGG | - | chr1.4:39005693-39005712 | MS.gene065602:intron | 50.0% | |
| CGGTAGTTAACTACCGCTGA+GGG | - | chr1.4:39007591-39007610 | MS.gene065602:intron | 50.0% | |
| GGCCAATACTCATACAGCTC+TGG | + | chr1.4:39004773-39004792 | None:intergenic | 50.0% | |
| TAGGCCGACATCTGCCAATT+GGG | - | chr1.4:39005688-39005707 | MS.gene065602:intron | 50.0% | |
| TGTGGAAGGAAACCCATGCT+TGG | - | chr1.4:39006325-39006344 | MS.gene065602:intron | 50.0% | |
| ! | AAAGCCGGTTTAAGGTCAGC+TGG | + | chr1.4:39006638-39006657 | None:intergenic | 50.0% |
| ! | CTCTTGCCTTGTTGTAGACC+AGG | + | chr1.4:39005888-39005907 | None:intergenic | 50.0% |
| AATAAACCCGAGCGGAGCAC+GGG | + | chr1.4:39007076-39007095 | None:intergenic | 55.0% | |
| CAATAAACCCGAGCGGAGCA+CGG | + | chr1.4:39007077-39007096 | None:intergenic | 55.0% | |
| GAAGGTGGGGTAAAAGAGGG+AGG | - | chr1.4:39006998-39007017 | MS.gene065602:intron | 55.0% | |
| GCGGTAGTTAACTACCGCTG+AGG | - | chr1.4:39007590-39007609 | MS.gene065602:intron | 55.0% | |
| TGCCCGCCAAAGATTGTGGA+AGG | - | chr1.4:39006311-39006330 | MS.gene065602:intron | 55.0% | |
| ! | TTTTTGACCCGTGCTCCGCT+CGG | - | chr1.4:39007066-39007085 | MS.gene065602:intron | 55.0% |
| !! | TTCCTCTAGCTCTCCCCTGA+TGG | + | chr1.4:39006893-39006912 | None:intergenic | 55.0% |
| CACCATCAGGGGAGAGCTAG+AGG | - | chr1.4:39006888-39006907 | MS.gene065602:intron | 60.0% | |
| ! | TTTTGACCCGTGCTCCGCTC+GGG | - | chr1.4:39007067-39007086 | MS.gene065602:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 39004767 | 39007918 | 39004767 | ID=MS.gene065602 |
| chr1.4 | mRNA | 39004767 | 39007918 | 39004767 | ID=MS.gene065602.t1;Parent=MS.gene065602 |
| chr1.4 | exon | 39007845 | 39007918 | 39007845 | ID=MS.gene065602.t1.exon1;Parent=MS.gene065602.t1 |
| chr1.4 | CDS | 39007845 | 39007918 | 39007845 | ID=cds.MS.gene065602.t1;Parent=MS.gene065602.t1 |
| chr1.4 | exon | 39007660 | 39007756 | 39007660 | ID=MS.gene065602.t1.exon2;Parent=MS.gene065602.t1 |
| chr1.4 | CDS | 39007660 | 39007756 | 39007660 | ID=cds.MS.gene065602.t1;Parent=MS.gene065602.t1 |
| chr1.4 | exon | 39006889 | 39006994 | 39006889 | ID=MS.gene065602.t1.exon3;Parent=MS.gene065602.t1 |
| chr1.4 | CDS | 39006889 | 39006994 | 39006889 | ID=cds.MS.gene065602.t1;Parent=MS.gene065602.t1 |
| chr1.4 | exon | 39006727 | 39006808 | 39006727 | ID=MS.gene065602.t1.exon4;Parent=MS.gene065602.t1 |
| chr1.4 | CDS | 39006727 | 39006808 | 39006727 | ID=cds.MS.gene065602.t1;Parent=MS.gene065602.t1 |
| chr1.4 | exon | 39006000 | 39006105 | 39006000 | ID=MS.gene065602.t1.exon5;Parent=MS.gene065602.t1 |
| chr1.4 | CDS | 39006000 | 39006105 | 39006000 | ID=cds.MS.gene065602.t1;Parent=MS.gene065602.t1 |
| chr1.4 | exon | 39004896 | 39004955 | 39004896 | ID=MS.gene065602.t1.exon6;Parent=MS.gene065602.t1 |
| chr1.4 | CDS | 39004896 | 39004955 | 39004896 | ID=cds.MS.gene065602.t1;Parent=MS.gene065602.t1 |
| chr1.4 | exon | 39004767 | 39004787 | 39004767 | ID=MS.gene065602.t1.exon7;Parent=MS.gene065602.t1 |
| chr1.4 | CDS | 39004767 | 39004787 | 39004767 | ID=cds.MS.gene065602.t1;Parent=MS.gene065602.t1 |
| Gene Sequence |
| Protein sequence |
