Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066087.t1 | ACJ85369.1 | 99.3 | 284 | 2 | 0 | 1 | 284 | 1 | 284 | 5.60E-154 | 553.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066087.t1 | Q6L4S3 | 87.2 | 281 | 36 | 0 | 1 | 281 | 1 | 281 | 4.0e-140 | 498.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066087.t1 | B7FKT5 | 99.3 | 284 | 2 | 0 | 1 | 284 | 1 | 284 | 4.1e-154 | 553.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68929 | MS.gene066087 | PPI |
| MS.gene31416 | MS.gene066087 | PPI |
| MS.gene029948 | MS.gene066087 | PPI |
| MS.gene20481 | MS.gene066087 | PPI |
| MS.gene055768 | MS.gene066087 | PPI |
| MS.gene043467 | MS.gene066087 | PPI |
| MS.gene030984 | MS.gene066087 | PPI |
| MS.gene066087 | MS.gene028857 | PPI |
| MS.gene59292 | MS.gene066087 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066087.t1 | MTR_4g107720 | 93.662 | 284 | 18 | 0 | 1 | 284 | 1 | 284 | 0.0 | 536 |
| MS.gene066087.t1 | MTR_4g107810 | 93.617 | 282 | 18 | 0 | 1 | 282 | 1 | 282 | 0.0 | 533 |
| MS.gene066087.t1 | MTR_4g107760 | 93.617 | 282 | 18 | 0 | 1 | 282 | 1 | 282 | 0.0 | 533 |
| MS.gene066087.t1 | MTR_4g107830 | 86.622 | 299 | 25 | 1 | 1 | 284 | 1 | 299 | 0.0 | 531 |
| MS.gene066087.t1 | MTR_4g107810 | 93.617 | 282 | 18 | 0 | 1 | 282 | 61 | 342 | 0.0 | 531 |
| MS.gene066087.t1 | MTR_4g107730 | 93.310 | 284 | 17 | 1 | 1 | 284 | 1 | 282 | 0.0 | 519 |
| MS.gene066087.t1 | MTR_6g011380 | 82.270 | 282 | 50 | 0 | 1 | 282 | 1 | 282 | 1.20e-176 | 488 |
| MS.gene066087.t1 | MTR_8g469160 | 78.723 | 282 | 60 | 0 | 1 | 282 | 1 | 282 | 9.85e-174 | 481 |
| MS.gene066087.t1 | MTR_6g460470 | 58.803 | 284 | 115 | 1 | 1 | 282 | 1 | 284 | 5.86e-119 | 343 |
| MS.gene066087.t1 | MTR_4g107700 | 92.771 | 83 | 6 | 0 | 202 | 284 | 6 | 88 | 3.24e-50 | 160 |
| MS.gene066087.t1 | MTR_6g060500 | 50.769 | 65 | 19 | 1 | 161 | 212 | 1 | 65 | 7.68e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066087.t1 | AT5G62740 | 87.943 | 282 | 34 | 0 | 1 | 282 | 1 | 282 | 0.0 | 524 |
| MS.gene066087.t1 | AT1G69840 | 82.624 | 282 | 49 | 0 | 1 | 282 | 1 | 282 | 3.41e-172 | 477 |
| MS.gene066087.t1 | AT1G69840 | 82.624 | 282 | 49 | 0 | 1 | 282 | 1 | 282 | 3.41e-172 | 477 |
| MS.gene066087.t1 | AT1G69840 | 82.624 | 282 | 49 | 0 | 1 | 282 | 1 | 282 | 3.41e-172 | 477 |
| MS.gene066087.t1 | AT1G69840 | 82.624 | 282 | 49 | 0 | 1 | 282 | 1 | 282 | 3.41e-172 | 477 |
| MS.gene066087.t1 | AT1G69840 | 82.624 | 282 | 49 | 0 | 1 | 282 | 1 | 282 | 3.41e-172 | 477 |
| MS.gene066087.t1 | AT1G69840 | 82.624 | 282 | 49 | 0 | 1 | 282 | 1 | 282 | 3.41e-172 | 477 |
| MS.gene066087.t1 | AT1G69840 | 82.624 | 282 | 49 | 0 | 1 | 282 | 1 | 282 | 3.41e-172 | 477 |
| MS.gene066087.t1 | AT3G01290 | 77.739 | 283 | 63 | 0 | 1 | 283 | 1 | 283 | 7.62e-169 | 469 |
| MS.gene066087.t1 | AT5G51570 | 58.099 | 284 | 117 | 1 | 1 | 282 | 1 | 284 | 1.08e-121 | 350 |
Find 61 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACACTATGAAAGAAAT+TGG | 0.235356 | 8.1:+17034880 | MS.gene066087:CDS |
| GGAGAAGTCCGTCACGAATT+TGG | 0.259803 | 8.1:-17034969 | None:intergenic |
| GTGGCTATGAAAGAAGGTTT+TGG | 0.357672 | 8.1:+17033354 | MS.gene066087:CDS |
| AATGAACACAGCAGAAGATT+TGG | 0.365320 | 8.1:-17034911 | None:intergenic |
| TTCCTTGGAAAACGAATTGC+TGG | 0.386474 | 8.1:+17033423 | MS.gene066087:CDS |
| TGCAAAAGATGTCATGGATT+TGG | 0.389648 | 8.1:+17034840 | MS.gene066087:CDS |
| GTATCATCCAAGTTGAGCTT+TGG | 0.393932 | 8.1:-17034044 | None:intergenic |
| GCCCGTTTCACATGCTCGTC+TGG | 0.399568 | 8.1:-17034254 | None:intergenic |
| AATTCGTGACGGACTTCTCC+AGG | 0.405210 | 8.1:+17034972 | MS.gene066087:CDS |
| GGTTTGAGAAACAGTGTGAT+TGG | 0.406441 | 8.1:+17034790 | MS.gene066087:CDS |
| GCCAGACGAGCATGTGAAAC+GGG | 0.414388 | 8.1:+17034253 | MS.gene066087:CDS |
| GAACAGGCTATGTCAGCATA+TGG | 0.456835 | 8.1:+17034194 | MS.gene066087:intron |
| AAGTTTGTAAAACGCATCAT+TGG | 0.460677 | 8.1:-17033858 | None:intergenic |
| CATTGCATGCCATGGTTCCT+TGG | 0.471591 | 8.1:+17033408 | MS.gene066087:CDS |
| CTCTCTTCGGCTACAACAGT+TGG | 0.475891 | 8.1:+17033452 | MS.gene066087:CDS |
| TTCTATTCAATACCGTGCCT+TGG | 0.491841 | 8.1:+17033826 | MS.gene066087:CDS |
| TTGCTGGTCATCTCTCTCTT+CGG | 0.493263 | 8.1:+17033439 | MS.gene066087:CDS |
| TTTGAAGAGGTGCTTCAGCC+AGG | 0.501147 | 8.1:+17033381 | MS.gene066087:CDS |
| CATGGCATGCAATGGCATCC+TGG | 0.506841 | 8.1:-17033399 | None:intergenic |
| AGCCAGACGAGCATGTGAAA+CGG | 0.508785 | 8.1:+17034252 | MS.gene066087:CDS |
| CTGAGTCTAAATATCTCCAT+GGG | 0.528009 | 8.1:+17034731 | MS.gene066087:CDS |
| TCTACAGTGGCTATGAAAGA+AGG | 0.529221 | 8.1:+17033348 | MS.gene066087:CDS |
| AGTAAAGCGAGCCGAGGGTG+AGG | 0.530224 | 8.1:+17034708 | MS.gene066087:CDS |
| CAACGTCAAGCCATTGTGGA+TGG | 0.533502 | 8.1:+17034769 | MS.gene066087:CDS |
| ATCATTGGCGTTGTCTGCCA+AGG | 0.539081 | 8.1:-17033843 | None:intergenic |
| GACAAGTGCAAAAGATGTCA+TGG | 0.548649 | 8.1:+17034834 | MS.gene066087:CDS |
| GTGTTCATTCCACACGGACC+TGG | 0.552060 | 8.1:+17034925 | MS.gene066087:CDS |
| ACTACATCGCGAACAGCACC+AGG | 0.554557 | 8.1:-17034943 | None:intergenic |
| GTCTAAATATCTCCATGGGG+TGG | 0.557451 | 8.1:+17034735 | MS.gene066087:CDS |
| GAACACAGCAGAAGATTTGG+AGG | 0.567527 | 8.1:-17034908 | None:intergenic |
| AGTGGAAGAAGAACTTGAGA+AGG | 0.570489 | 8.1:+17034097 | MS.gene066087:CDS |
| CAGGATGCCATTGCATGCCA+TGG | 0.571416 | 8.1:+17033400 | MS.gene066087:CDS |
| TAACAAACGAACCTTTGTCT+TGG | 0.574288 | 8.1:-17033490 | None:intergenic |
| TCTAAATATCTCCATGGGGT+GGG | 0.579878 | 8.1:+17034736 | MS.gene066087:CDS |
| GCTGAGTCTAAATATCTCCA+TGG | 0.580913 | 8.1:+17034730 | MS.gene066087:CDS |
| CAAGGAACCATGGCATGCAA+TGG | 0.581813 | 8.1:-17033407 | None:intergenic |
| ATATGTTCCAAAGCTCAACT+TGG | 0.583632 | 8.1:+17034037 | MS.gene066087:CDS |
| AAATGAAATCGCAAAAGCAG+TGG | 0.586140 | 8.1:+17034079 | MS.gene066087:CDS |
| GAGAGTGGCAGCTAACGAAA+AGG | 0.587274 | 8.1:+17034663 | MS.gene066087:CDS |
| TTTAGACTCAGCCTCACCCT+CGG | 0.596378 | 8.1:-17034719 | None:intergenic |
| GGCAGCTAACGAAAAGGCGG+AGG | 0.599752 | 8.1:+17034669 | MS.gene066087:CDS |
| TGGCGTTGTCTGCCAAGGCA+CGG | 0.603453 | 8.1:-17033838 | None:intergenic |
| GAAGCTACTCATGAGAACCC+TGG | 0.616440 | 8.1:-17034990 | None:intergenic |
| ATTCGTGACGGACTTCTCCA+GGG | 0.627782 | 8.1:+17034973 | MS.gene066087:CDS |
| ATCAGCTGCAAGAATGAGAG+TGG | 0.628496 | 8.1:+17034648 | MS.gene066087:intron |
| GCTATGAATGAAATCAATGC+CGG | 0.629714 | 8.1:+17034275 | MS.gene066087:CDS |
| CACAGCAGAAGATTTGGAGG+CGG | 0.636213 | 8.1:-17034905 | None:intergenic |
| CTTGCAAGTAAAGCGAGCCG+AGG | 0.639259 | 8.1:+17034702 | MS.gene066087:CDS |
| TCGTCAACGTCAAGCCATTG+TGG | 0.640251 | 8.1:+17034765 | MS.gene066087:CDS |
| TTGCAAGTAAAGCGAGCCGA+GGG | 0.652348 | 8.1:+17034703 | MS.gene066087:CDS |
| TCTGCTGTGTTCATTCCACA+CGG | 0.654464 | 8.1:+17034919 | MS.gene066087:CDS |
| GACGAGCAATACCCACCCCA+TGG | 0.656560 | 8.1:-17034747 | None:intergenic |
| TTTACAAACTTAGCAACACA+AGG | 0.662587 | 8.1:+17033870 | MS.gene066087:CDS |
| AAAATGTGAGACCAAGACAA+AGG | 0.665463 | 8.1:+17033479 | MS.gene066087:CDS |
| GTTTCTCAAACCATCCACAA+TGG | 0.673360 | 8.1:-17034779 | None:intergenic |
| CGAACAGCACCAGGTCCGTG+TGG | 0.676751 | 8.1:-17034934 | None:intergenic |
| AGTGGCAGCTAACGAAAAGG+CGG | 0.677436 | 8.1:+17034666 | MS.gene066087:CDS |
| GTAGTAAGCCAAATTCGTGA+CGG | 0.698713 | 8.1:+17034961 | MS.gene066087:CDS |
| TGTCAAAGTATTGAGTGACA+AGG | 0.713018 | 8.1:-17034864 | None:intergenic |
| GCAAGTTGATCAATCTACAG+TGG | 0.715524 | 8.1:+17033335 | MS.gene066087:CDS |
| TGAGTCTAAATATCTCCATG+GGG | 0.748301 | 8.1:+17034732 | MS.gene066087:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTTAAATTATCAGCTA+AGG | + | chr8.1:17033982-17034001 | MS.gene066087:intron | 15.0% |
| !! | ACAATTAGCATTTATTGATA+TGG | + | chr8.1:17034138-17034157 | MS.gene066087:intron | 20.0% |
| !! | ATTAATTCATTGGAAAAACA+TGG | - | chr8.1:17033749-17033768 | None:intergenic | 20.0% |
| !! | GAACAAAATAGATAGATATT+TGG | - | chr8.1:17034589-17034608 | None:intergenic | 20.0% |
| !!! | ATATCTATCTATTTTGTTCT+TGG | + | chr8.1:17034590-17034609 | MS.gene066087:intron | 20.0% |
| !!! | TACATATAGAGTATTGAAAA+TGG | - | chr8.1:17033697-17033716 | None:intergenic | 20.0% |
| ! | AAAAACATAAGCTTGAATCT+GGG | - | chr8.1:17033897-17033916 | None:intergenic | 25.0% |
| ! | AACATGTCATAACTAATAAG+TGG | + | chr8.1:17033953-17033972 | MS.gene066087:intron | 25.0% |
| ! | ACCAATCAACATTAATTCAT+TGG | - | chr8.1:17033759-17033778 | None:intergenic | 25.0% |
| ! | ATCATAACATGACTATCTAT+TGG | - | chr8.1:17034492-17034511 | None:intergenic | 25.0% |
| ! | GAAACCAGTATAAGAAAATA+TGG | - | chr8.1:17034620-17034639 | None:intergenic | 25.0% |
| ! | TCAGATAATTACAATACTGT+GGG | - | chr8.1:17034328-17034347 | None:intergenic | 25.0% |
| ! | TCCAATGAATTAATGTTGAT+TGG | + | chr8.1:17033755-17033774 | MS.gene066087:intron | 25.0% |
| ! | TTCAGATAATTACAATACTG+TGG | - | chr8.1:17034329-17034348 | None:intergenic | 25.0% |
| ! | TTCTGTTGCAAAAATGATTT+AGG | + | chr8.1:17034432-17034451 | MS.gene066087:intron | 25.0% |
| ! | TTTGACACTATGAAAGAAAT+TGG | + | chr8.1:17034880-17034899 | MS.gene066087:CDS | 25.0% |
| ! | TTTGCAACAGAATTAGATTT+AGG | - | chr8.1:17034424-17034443 | None:intergenic | 25.0% |
| !! | ATTGCCATATTTTCTTATAC+TGG | + | chr8.1:17034613-17034632 | MS.gene066087:intron | 25.0% |
| !!! | ATTCAAGCTTATGTTTTTGA+TGG | + | chr8.1:17033899-17033918 | MS.gene066087:CDS | 25.0% |
| AAGTTTGTAAAACGCATCAT+TGG | - | chr8.1:17033861-17033880 | None:intergenic | 30.0% | |
| AATGATTTAGGCATTTCCTT+TGG | + | chr8.1:17034444-17034463 | MS.gene066087:intron | 30.0% | |
| AATGTACAGTGTATCATGTT+AGG | - | chr8.1:17033722-17033741 | None:intergenic | 30.0% | |
| ACTGAGGATTTATGTAACTT+TGG | + | chr8.1:17034164-17034183 | MS.gene066087:intron | 30.0% | |
| AGGATTTATGTAACTTTGGA+TGG | + | chr8.1:17034168-17034187 | MS.gene066087:intron | 30.0% | |
| ATGATTTAGGCATTTCCTTT+GGG | + | chr8.1:17034445-17034464 | MS.gene066087:intron | 30.0% | |
| ATGTTTATGTATTGCTAAGC+AGG | - | chr8.1:17033938-17033957 | None:intergenic | 30.0% | |
| CAAAAACATAAGCTTGAATC+TGG | - | chr8.1:17033898-17033917 | None:intergenic | 30.0% | |
| CAGATAATTACAATACTGTG+GGG | - | chr8.1:17034327-17034346 | None:intergenic | 30.0% | |
| CTGAATTACACATGTATGTA+TGG | + | chr8.1:17034344-17034363 | MS.gene066087:intron | 30.0% | |
| GTATGTATGGAAAACTATGT+GGG | + | chr8.1:17034357-17034376 | MS.gene066087:intron | 30.0% | |
| TATGTATGGAAAACTATGTG+GGG | + | chr8.1:17034358-17034377 | MS.gene066087:intron | 30.0% | |
| TGTATGTATGGAAAACTATG+TGG | + | chr8.1:17034356-17034375 | MS.gene066087:intron | 30.0% | |
| TGTTTATGTATTGCTAAGCA+GGG | - | chr8.1:17033937-17033956 | None:intergenic | 30.0% | |
| TTTACAAACTTAGCAACACA+AGG | + | chr8.1:17033870-17033889 | MS.gene066087:CDS | 30.0% | |
| TTTATTGATATGGTGAACTG+AGG | + | chr8.1:17034148-17034167 | MS.gene066087:intron | 30.0% | |
| ! | ATGGTCTTACAAAAACATAC+CGG | - | chr8.1:17034297-17034316 | None:intergenic | 30.0% |
| ! | GATTTTCAGTTAATGTACCA+GGG | + | chr8.1:17034812-17034831 | MS.gene066087:CDS | 30.0% |
| !! | ATTTTCATTAGGTGTCATCA+CGG | + | chr8.1:17033602-17033621 | MS.gene066087:intron | 30.0% |
| !!! | AGGTTTTGGAAAATTTGAAG+AGG | + | chr8.1:17033368-17033387 | MS.gene066087:CDS | 30.0% |
| AAAATGTGAGACCAAGACAA+AGG | + | chr8.1:17033479-17033498 | MS.gene066087:CDS | 35.0% | |
| AAATGAAATCGCAAAAGCAG+TGG | + | chr8.1:17034079-17034098 | MS.gene066087:CDS | 35.0% | |
| AATGAACACAGCAGAAGATT+TGG | - | chr8.1:17034914-17034933 | None:intergenic | 35.0% | |
| ATATGTTCCAAAGCTCAACT+TGG | + | chr8.1:17034037-17034056 | MS.gene066087:CDS | 35.0% | |
| CATAGTTAATGCGAACATAC+AGG | - | chr8.1:17033644-17033663 | None:intergenic | 35.0% | |
| CATGAAATGACGTGAAGATT+TGG | - | chr8.1:17033537-17033556 | None:intergenic | 35.0% | |
| CTGAGTCTAAATATCTCCAT+GGG | + | chr8.1:17034731-17034750 | MS.gene066087:CDS | 35.0% | |
| CTGTATGTTCGCATTAACTA+TGG | + | chr8.1:17033642-17033661 | MS.gene066087:intron | 35.0% | |
| CTTTCACTAGTATATCGATC+AGG | + | chr8.1:17033671-17033690 | MS.gene066087:intron | 35.0% | |
| GCTATGAATGAAATCAATGC+CGG | + | chr8.1:17034275-17034294 | MS.gene066087:CDS | 35.0% | |
| TAACAAACGAACCTTTGTCT+TGG | - | chr8.1:17033493-17033512 | None:intergenic | 35.0% | |
| TGAGTCTAAATATCTCCATG+GGG | + | chr8.1:17034732-17034751 | MS.gene066087:CDS | 35.0% | |
| TGCAAAAGATGTCATGGATT+TGG | + | chr8.1:17034840-17034859 | MS.gene066087:CDS | 35.0% | |
| ! | GGATTTTCAGTTAATGTACC+AGG | + | chr8.1:17034811-17034830 | MS.gene066087:CDS | 35.0% |
| !! | TGTCAAAGTATTGAGTGACA+AGG | - | chr8.1:17034867-17034886 | None:intergenic | 35.0% |
| AAAGAAGCAAAGCAACCCAA+AGG | - | chr8.1:17034463-17034482 | None:intergenic | 40.0% | |
| AAGCACTCGATAGACAAACA+TGG | - | chr8.1:17034562-17034581 | None:intergenic | 40.0% | |
| AGTGGAAGAAGAACTTGAGA+AGG | + | chr8.1:17034097-17034116 | MS.gene066087:CDS | 40.0% | |
| GACAAGTGCAAAAGATGTCA+TGG | + | chr8.1:17034834-17034853 | MS.gene066087:CDS | 40.0% | |
| GCTGAGTCTAAATATCTCCA+TGG | + | chr8.1:17034730-17034749 | MS.gene066087:CDS | 40.0% | |
| GGTTTGAGAAACAGTGTGAT+TGG | + | chr8.1:17034790-17034809 | MS.gene066087:CDS | 40.0% | |
| GTAGTAAGCCAAATTCGTGA+CGG | + | chr8.1:17034961-17034980 | MS.gene066087:CDS | 40.0% | |
| GTTTCTCAAACCATCCACAA+TGG | - | chr8.1:17034782-17034801 | None:intergenic | 40.0% | |
| TAACTTTGGATGGTCTGAAC+AGG | + | chr8.1:17034178-17034197 | MS.gene066087:intron | 40.0% | |
| TCTAAATATCTCCATGGGGT+GGG | + | chr8.1:17034736-17034755 | MS.gene066087:CDS | 40.0% | |
| TCTACAGTGGCTATGAAAGA+AGG | + | chr8.1:17033348-17033367 | MS.gene066087:CDS | 40.0% | |
| TTCCTTGGAAAACGAATTGC+TGG | + | chr8.1:17033423-17033442 | MS.gene066087:CDS | 40.0% | |
| TTCTATTCAATACCGTGCCT+TGG | + | chr8.1:17033826-17033845 | MS.gene066087:CDS | 40.0% | |
| ! | ATTCGTTTTCCAAGGAACCA+TGG | - | chr8.1:17033420-17033439 | None:intergenic | 40.0% |
| ! | GTATCATCCAAGTTGAGCTT+TGG | - | chr8.1:17034047-17034066 | None:intergenic | 40.0% |
| ! | GTGGCTATGAAAGAAGGTTT+TGG | + | chr8.1:17033354-17033373 | MS.gene066087:CDS | 40.0% |
| ! | TTGGGTTGCTTTGCTTCTTT+GGG | + | chr8.1:17034463-17034482 | MS.gene066087:intron | 40.0% |
| !! | GCAAGTTGATCAATCTACAG+TGG | + | chr8.1:17033335-17033354 | MS.gene066087:CDS | 40.0% |
| !! | TTTGGGTTGCTTTGCTTCTT+TGG | + | chr8.1:17034462-17034481 | MS.gene066087:intron | 40.0% |
| AATACTGTGGGGACATCTCA+TGG | - | chr8.1:17034316-17034335 | None:intergenic | 45.0% | |
| ATCAGCTGCAAGAATGAGAG+TGG | + | chr8.1:17034648-17034667 | MS.gene066087:intron | 45.0% | |
| GAACACAGCAGAAGATTTGG+AGG | - | chr8.1:17034911-17034930 | None:intergenic | 45.0% | |
| GAACAGGCTATGTCAGCATA+TGG | + | chr8.1:17034194-17034213 | MS.gene066087:intron | 45.0% | |
| GTCTAAATATCTCCATGGGG+TGG | + | chr8.1:17034735-17034754 | MS.gene066087:CDS | 45.0% | |
| TCTGCTGTGTTCATTCCACA+CGG | + | chr8.1:17034919-17034938 | MS.gene066087:CDS | 45.0% | |
| TTGCTGGTCATCTCTCTCTT+CGG | + | chr8.1:17033439-17033458 | MS.gene066087:CDS | 45.0% | |
| ! | ACATCTTTTGCACTTGTCCC+TGG | - | chr8.1:17034832-17034851 | None:intergenic | 45.0% |
| ! | GACCAGCAATTCGTTTTCCA+AGG | - | chr8.1:17033428-17033447 | None:intergenic | 45.0% |
| ! | TGGGTTGCTTTGCTTCTTTG+GGG | + | chr8.1:17034464-17034483 | MS.gene066087:intron | 45.0% |
| !!! | AATATTTTTTAATTTTCATT+AGG | + | chr8.1:17033591-17033610 | MS.gene066087:intron | 5.0% |
| !!! | TTTAATATTTATTTTCTTTT+AGG | + | chr8.1:17033778-17033797 | MS.gene066087:intron | 5.0% |
| AGCCAGACGAGCATGTGAAA+CGG | + | chr8.1:17034252-17034271 | MS.gene066087:CDS | 50.0% | |
| AGTGGCAGCTAACGAAAAGG+CGG | + | chr8.1:17034666-17034685 | MS.gene066087:CDS | 50.0% | |
| ATCATTGGCGTTGTCTGCCA+AGG | - | chr8.1:17033846-17033865 | None:intergenic | 50.0% | |
| CAACGTCAAGCCATTGTGGA+TGG | + | chr8.1:17034769-17034788 | MS.gene066087:CDS | 50.0% | |
| CAAGGAACCATGGCATGCAA+TGG | - | chr8.1:17033410-17033429 | None:intergenic | 50.0% | |
| CACAGCAGAAGATTTGGAGG+CGG | - | chr8.1:17034908-17034927 | None:intergenic | 50.0% | |
| CATTGCATGCCATGGTTCCT+TGG | + | chr8.1:17033408-17033427 | MS.gene066087:CDS | 50.0% | |
| CTCTCTTCGGCTACAACAGT+TGG | + | chr8.1:17033452-17033471 | MS.gene066087:CDS | 50.0% | |
| GAGAGTGGCAGCTAACGAAA+AGG | + | chr8.1:17034663-17034682 | MS.gene066087:CDS | 50.0% | |
| GGAGAAGTCCGTCACGAATT+TGG | - | chr8.1:17034972-17034991 | None:intergenic | 50.0% | |
| TCGTCAACGTCAAGCCATTG+TGG | + | chr8.1:17034765-17034784 | MS.gene066087:CDS | 50.0% | |
| TTGCAAGTAAAGCGAGCCGA+GGG | + | chr8.1:17034703-17034722 | MS.gene066087:CDS | 50.0% | |
| TTTAGACTCAGCCTCACCCT+CGG | - | chr8.1:17034722-17034741 | None:intergenic | 50.0% | |
| ! | GGGTTGCTTTGCTTCTTTGG+GGG | + | chr8.1:17034465-17034484 | MS.gene066087:intron | 50.0% |
| !! | AATTCGTGACGGACTTCTCC+AGG | + | chr8.1:17034972-17034991 | MS.gene066087:CDS | 50.0% |
| !! | ATTCGTGACGGACTTCTCCA+GGG | + | chr8.1:17034973-17034992 | MS.gene066087:CDS | 50.0% |
| !! | TTTGAAGAGGTGCTTCAGCC+AGG | + | chr8.1:17033381-17033400 | MS.gene066087:CDS | 50.0% |
| ACTACATCGCGAACAGCACC+AGG | - | chr8.1:17034946-17034965 | None:intergenic | 55.0% | |
| CAGGATGCCATTGCATGCCA+TGG | + | chr8.1:17033400-17033419 | MS.gene066087:CDS | 55.0% | |
| CATGGCATGCAATGGCATCC+TGG | - | chr8.1:17033402-17033421 | None:intergenic | 55.0% | |
| CTTGCAAGTAAAGCGAGCCG+AGG | + | chr8.1:17034702-17034721 | MS.gene066087:CDS | 55.0% | |
| GCCAGACGAGCATGTGAAAC+GGG | + | chr8.1:17034253-17034272 | MS.gene066087:CDS | 55.0% | |
| GTGTTCATTCCACACGGACC+TGG | + | chr8.1:17034925-17034944 | MS.gene066087:CDS | 55.0% | |
| AGTAAAGCGAGCCGAGGGTG+AGG | + | chr8.1:17034708-17034727 | MS.gene066087:CDS | 60.0% | |
| GACGAGCAATACCCACCCCA+TGG | - | chr8.1:17034750-17034769 | None:intergenic | 60.0% | |
| GCCCGTTTCACATGCTCGTC+TGG | - | chr8.1:17034257-17034276 | None:intergenic | 60.0% | |
| GGCAGCTAACGAAAAGGCGG+AGG | + | chr8.1:17034669-17034688 | MS.gene066087:CDS | 60.0% | |
| TGGCGTTGTCTGCCAAGGCA+CGG | - | chr8.1:17033841-17033860 | None:intergenic | 60.0% | |
| CGAACAGCACCAGGTCCGTG+TGG | - | chr8.1:17034937-17034956 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 17033312 | 17035008 | 17033312 | ID=MS.gene066087 |
| chr8.1 | mRNA | 17033312 | 17035008 | 17033312 | ID=MS.gene066087.t1;Parent=MS.gene066087 |
| chr8.1 | exon | 17033312 | 17033500 | 17033312 | ID=MS.gene066087.t1.exon1;Parent=MS.gene066087.t1 |
| chr8.1 | CDS | 17033312 | 17033500 | 17033312 | ID=cds.MS.gene066087.t1;Parent=MS.gene066087.t1 |
| chr8.1 | exon | 17033800 | 17033920 | 17033800 | ID=MS.gene066087.t1.exon2;Parent=MS.gene066087.t1 |
| chr8.1 | CDS | 17033800 | 17033920 | 17033800 | ID=cds.MS.gene066087.t1;Parent=MS.gene066087.t1 |
| chr8.1 | exon | 17034027 | 17034118 | 17034027 | ID=MS.gene066087.t1.exon3;Parent=MS.gene066087.t1 |
| chr8.1 | CDS | 17034027 | 17034118 | 17034027 | ID=cds.MS.gene066087.t1;Parent=MS.gene066087.t1 |
| chr8.1 | exon | 17034200 | 17034296 | 17034200 | ID=MS.gene066087.t1.exon4;Parent=MS.gene066087.t1 |
| chr8.1 | CDS | 17034200 | 17034296 | 17034200 | ID=cds.MS.gene066087.t1;Parent=MS.gene066087.t1 |
| chr8.1 | exon | 17034653 | 17035008 | 17034653 | ID=MS.gene066087.t1.exon5;Parent=MS.gene066087.t1 |
| chr8.1 | CDS | 17034653 | 17035008 | 17034653 | ID=cds.MS.gene066087.t1;Parent=MS.gene066087.t1 |
| Gene Sequence |
| Protein sequence |
