Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066088.t1 | XP_003608997.2 | 99.7 | 286 | 1 | 0 | 1 | 286 | 1 | 286 | 1.10E-154 | 555.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066088.t1 | Q5GI04 | 88.4 | 285 | 33 | 0 | 1 | 285 | 1 | 285 | 6.2e-141 | 501.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066088.t1 | G7JPW8 | 99.7 | 286 | 1 | 0 | 1 | 286 | 1 | 286 | 8.2e-155 | 555.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene20481 | MS.gene066088 | PPI |
| MS.gene066088 | MS.gene59292 | PPI |
| MS.gene043467 | MS.gene066088 | PPI |
| MS.gene066088 | MS.gene030984 | PPI |
| MS.gene066088 | MS.gene028857 | PPI |
| MS.gene68929 | MS.gene066088 | PPI |
| MS.gene066088 | MS.gene055768 | PPI |
| MS.gene31416 | MS.gene066088 | PPI |
| MS.gene066088 | MS.gene029948 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066088.t1 | MTR_4g107810 | 99.650 | 286 | 1 | 0 | 1 | 286 | 1 | 286 | 0.0 | 591 |
| MS.gene066088.t1 | MTR_4g107760 | 99.650 | 286 | 1 | 0 | 1 | 286 | 1 | 286 | 0.0 | 591 |
| MS.gene066088.t1 | MTR_4g107810 | 99.650 | 286 | 1 | 0 | 1 | 286 | 61 | 346 | 0.0 | 589 |
| MS.gene066088.t1 | MTR_4g107830 | 90.033 | 301 | 13 | 2 | 1 | 286 | 1 | 299 | 0.0 | 545 |
| MS.gene066088.t1 | MTR_4g107720 | 95.105 | 286 | 12 | 1 | 1 | 286 | 1 | 284 | 0.0 | 541 |
| MS.gene066088.t1 | MTR_6g011380 | 84.211 | 285 | 45 | 0 | 1 | 285 | 1 | 285 | 0.0 | 502 |
| MS.gene066088.t1 | MTR_4g107730 | 88.732 | 284 | 26 | 2 | 1 | 282 | 1 | 280 | 1.50e-178 | 493 |
| MS.gene066088.t1 | MTR_8g469160 | 78.169 | 284 | 62 | 0 | 1 | 284 | 1 | 284 | 5.47e-175 | 484 |
| MS.gene066088.t1 | MTR_6g460470 | 56.446 | 287 | 123 | 1 | 1 | 285 | 1 | 287 | 1.29e-117 | 339 |
| MS.gene066088.t1 | MTR_4g107700 | 96.471 | 85 | 1 | 1 | 202 | 286 | 6 | 88 | 3.85e-51 | 163 |
| MS.gene066088.t1 | MTR_3g093220 | 30.055 | 183 | 122 | 5 | 19 | 199 | 71 | 249 | 5.28e-11 | 63.2 |
| MS.gene066088.t1 | MTR_6g060500 | 49.231 | 65 | 20 | 1 | 161 | 212 | 1 | 65 | 5.31e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066088.t1 | AT5G62740 | 90.071 | 282 | 28 | 0 | 1 | 282 | 1 | 282 | 0.0 | 529 |
| MS.gene066088.t1 | AT1G69840 | 84.043 | 282 | 45 | 0 | 1 | 282 | 1 | 282 | 1.30e-175 | 486 |
| MS.gene066088.t1 | AT1G69840 | 84.043 | 282 | 45 | 0 | 1 | 282 | 1 | 282 | 1.30e-175 | 486 |
| MS.gene066088.t1 | AT1G69840 | 84.043 | 282 | 45 | 0 | 1 | 282 | 1 | 282 | 1.30e-175 | 486 |
| MS.gene066088.t1 | AT1G69840 | 84.043 | 282 | 45 | 0 | 1 | 282 | 1 | 282 | 1.30e-175 | 486 |
| MS.gene066088.t1 | AT1G69840 | 84.043 | 282 | 45 | 0 | 1 | 282 | 1 | 282 | 1.30e-175 | 486 |
| MS.gene066088.t1 | AT1G69840 | 84.043 | 282 | 45 | 0 | 1 | 282 | 1 | 282 | 1.30e-175 | 486 |
| MS.gene066088.t1 | AT1G69840 | 84.043 | 282 | 45 | 0 | 1 | 282 | 1 | 282 | 1.30e-175 | 486 |
| MS.gene066088.t1 | AT3G01290 | 79.433 | 282 | 58 | 0 | 1 | 282 | 1 | 282 | 2.47e-170 | 473 |
| MS.gene066088.t1 | AT5G51570 | 56.597 | 288 | 123 | 1 | 1 | 286 | 1 | 288 | 9.92e-122 | 350 |
Find 63 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACACTATGAAAGAAAT+TGG | 0.222517 | 8.1:-17005895 | MS.gene066088:CDS |
| GGAGAAGTCCATCACGAATT+TGG | 0.279174 | 8.1:+17005806 | None:intergenic |
| CTTTATTTGCAAGATCTTCT+CGG | 0.287861 | 8.1:+17006083 | None:intergenic |
| GTATCATCCAAGTTGAGTTT+TGG | 0.298817 | 8.1:+17006889 | None:intergenic |
| GTGGCTATGAAAGAAGGTTT+TGG | 0.326852 | 8.1:-17007559 | MS.gene066088:CDS |
| CAACAGGCTATGTCAGCTTA+TGG | 0.345528 | 8.1:-17006746 | MS.gene066088:intron |
| CTCTCTTCGGGTACAACAAT+TGG | 0.345701 | 8.1:-17007461 | MS.gene066088:CDS |
| TTCCTTGGAAAACGAATTGC+TGG | 0.373724 | 8.1:-17007490 | MS.gene066088:CDS |
| TGCAAAAGATGTCATGGATA+TGG | 0.384185 | 8.1:-17005935 | MS.gene066088:CDS |
| TTGCTGGGCATCTCTCTCTT+CGG | 0.388662 | 8.1:-17007474 | MS.gene066088:CDS |
| TGCTGGGCATCTCTCTCTTC+GGG | 0.395978 | 8.1:-17007473 | MS.gene066088:CDS |
| GCCCGCTTCACATGGACATC+TGG | 0.415565 | 8.1:+17006686 | None:intergenic |
| GGTTTGAGAGACAGTGTGAT+TGG | 0.428212 | 8.1:-17005985 | MS.gene066088:CDS |
| AATTCGTGATGGACTTCTCC+AGG | 0.436039 | 8.1:-17005803 | MS.gene066088:CDS |
| GCTGAGTCTAAATATCTCTC+TGG | 0.445424 | 8.1:-17006045 | MS.gene066088:CDS |
| ATTTGAAAAGGTGCTTCAGC+CGG | 0.463345 | 8.1:-17007533 | MS.gene066088:CDS |
| CATTGCATGCCATGGTTCCT+TGG | 0.471591 | 8.1:-17007505 | MS.gene066088:CDS |
| AAGAATGAGGTTGGCAGCTA+AGG | 0.482595 | 8.1:-17006118 | MS.gene066088:CDS |
| TTCTATTCAATACCGTGCCT+TGG | 0.491841 | 8.1:-17007108 | MS.gene066088:CDS |
| GCCAGATGTCCATGTGAAGC+GGG | 0.510212 | 8.1:-17006687 | MS.gene066088:CDS |
| TCTCAAGTGGCTATGAAAGA+AGG | 0.511380 | 8.1:-17007565 | MS.gene066088:CDS |
| GTCTAAATATCTCTCTGGGA+TGG | 0.513624 | 8.1:-17006040 | MS.gene066088:CDS |
| TTTGAAAAGGTGCTTCAGCC+GGG | 0.514758 | 8.1:-17007532 | MS.gene066088:CDS |
| CATGGCATGCAATGGCATCC+CGG | 0.521469 | 8.1:+17007514 | None:intergenic |
| AATGAACACAGCAGAAGACT+TGG | 0.521852 | 8.1:+17005864 | None:intergenic |
| GTGTTCATTCCACATGGACC+TGG | 0.527747 | 8.1:-17005850 | MS.gene066088:CDS |
| CGGGATGCCATTGCATGCCA+TGG | 0.534181 | 8.1:-17007513 | MS.gene066088:CDS |
| TCTAAATATCTCTCTGGGAT+GGG | 0.543650 | 8.1:-17006039 | MS.gene066088:CDS |
| CATTCATAGCCCGCTTCACA+TGG | 0.551008 | 8.1:+17006678 | None:intergenic |
| AATAAAGCGAGCCGAGGGTG+AGG | 0.551044 | 8.1:-17006067 | MS.gene066088:CDS |
| CAACGTCAAGCTATTGTGGA+TGG | 0.553453 | 8.1:-17006006 | MS.gene066088:CDS |
| ATAGTAACGAACCTTTGTCT+TGG | 0.554746 | 8.1:+17007423 | None:intergenic |
| GCAACATCGCGAACAGCACC+AGG | 0.556632 | 8.1:+17005832 | None:intergenic |
| TCTGCTGTGTTCATTCCACA+TGG | 0.564187 | 8.1:-17005856 | MS.gene066088:CDS |
| CTGAGTCTAAATATCTCTCT+GGG | 0.568387 | 8.1:-17006044 | MS.gene066088:CDS |
| TCCTTGGAAAACGAATTGCT+GGG | 0.571212 | 8.1:-17007489 | MS.gene066088:CDS |
| GACGACTGCAAAAGATGTCA+TGG | 0.572197 | 8.1:-17005941 | MS.gene066088:CDS |
| GAACACAGCAGAAGACTTGG+AGG | 0.574169 | 8.1:+17005867 | None:intergenic |
| CAAGGAACCATGGCATGCAA+TGG | 0.581813 | 8.1:+17007506 | None:intergenic |
| GGCAGCTAAGGAGAAGGCTG+AGG | 0.585754 | 8.1:-17006106 | MS.gene066088:CDS |
| TCGCCAACGTCAAGCTATTG+TGG | 0.586819 | 8.1:-17006010 | MS.gene066088:CDS |
| ATACCGTGCCTTGGCAGACA+AGG | 0.587225 | 8.1:-17007099 | MS.gene066088:CDS |
| AGCCAGATGTCCATGTGAAG+CGG | 0.595395 | 8.1:-17006688 | MS.gene066088:CDS |
| TTTAGACTCAGCCTCACCCT+CGG | 0.596378 | 8.1:+17006056 | None:intergenic |
| ATCATTAGCCTTGTCTGCCA+AGG | 0.596483 | 8.1:+17007091 | None:intergenic |
| GCTATGAATGAAATCAATGC+AGG | 0.600928 | 8.1:-17006665 | MS.gene066088:intron |
| AAATGAAATTGCAAAAGCTG+TGG | 0.603554 | 8.1:-17006854 | MS.gene066088:CDS |
| ATCAGCTGCAAGAATGAGGT+TGG | 0.607568 | 8.1:-17006127 | MS.gene066088:intron |
| TGTGATCAGCTGCAAGAATG+AGG | 0.607950 | 8.1:-17006131 | MS.gene066088:intron |
| AAGTGTTCCAAAACTCAACT+TGG | 0.610923 | 8.1:-17006896 | MS.gene066088:CDS |
| GAGGTTGGCAGCTAAGGAGA+AGG | 0.617756 | 8.1:-17006112 | MS.gene066088:CDS |
| GCAAGTTGATCAATCTCAAG+TGG | 0.619072 | 8.1:-17007578 | MS.gene066088:CDS |
| TGTGGAAGAAGAACTTGAGA+AGG | 0.621419 | 8.1:-17006836 | MS.gene066088:intron |
| GTTGCTAGCCAAATTCGTGA+TGG | 0.622218 | 8.1:-17005814 | MS.gene066088:CDS |
| TAGCCTTGTCTGCCAAGGCA+CGG | 0.623988 | 8.1:+17007096 | None:intergenic |
| ATTCGTGATGGACTTCTCCA+GGG | 0.634995 | 8.1:-17005802 | MS.gene066088:CDS |
| CTTGCAAATAAAGCGAGCCG+AGG | 0.639259 | 8.1:-17006073 | MS.gene066088:CDS |
| ACTGATGAGATAGAGAACCC+TGG | 0.648950 | 8.1:+17005785 | None:intergenic |
| TTGCAAATAAAGCGAGCCGA+GGG | 0.652348 | 8.1:-17006072 | MS.gene066088:CDS |
| CAAATGTGAGACCAAGACAA+AGG | 0.653157 | 8.1:-17007434 | MS.gene066088:intron |
| CGAACAGCACCAGGTCCATG+TGG | 0.675254 | 8.1:+17005841 | None:intergenic |
| CATCCACAATAGCTTGACGT+TGG | 0.677687 | 8.1:+17006007 | None:intergenic |
| TGTCAAAATATTGAGTGACA+AGG | 0.695273 | 8.1:+17005911 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACAATTTTTTTTATTGATA+TGG | - | chr8.1:17006582-17006601 | MS.gene066088:intron | 10.0% |
| !!! | AAAGAAAGTATTTATGTTAT+TGG | + | chr8.1:17006031-17006050 | None:intergenic | 15.0% |
| !!! | TCCTAAATCTAATTTTATTT+AGG | - | chr8.1:17006982-17007001 | MS.gene066088:intron | 15.0% |
| !! | AATATGCAAATTATCTACTA+AGG | - | chr8.1:17006432-17006451 | MS.gene066088:intron | 20.0% |
| !! | GCCTAAATAAAATTAGATTT+AGG | + | chr8.1:17006986-17007005 | None:intergenic | 20.0% |
| !!! | TAAATACTTTCTTTTTGACT+AGG | - | chr8.1:17006037-17006056 | MS.gene066088:CDS | 20.0% |
| !!! | TTTTGACTAGGATTTTTTTT+AGG | - | chr8.1:17006049-17006068 | MS.gene066088:CDS | 20.0% |
| ! | AATTCAATGGAAAATATACG+AGG | + | chr8.1:17006199-17006218 | None:intergenic | 25.0% |
| ! | ACCAATCAACATTAATTCAA+TGG | + | chr8.1:17006212-17006231 | None:intergenic | 25.0% |
| ! | ATTTATGTTATTGGTAAGCA+TGG | + | chr8.1:17006022-17006041 | None:intergenic | 25.0% |
| ! | CAAAAACATAAGCTTGAATT+TGG | + | chr8.1:17006348-17006367 | None:intergenic | 25.0% |
| ! | GTTAAAACATAAGTCAAACA+AGG | + | chr8.1:17007100-17007119 | None:intergenic | 25.0% |
| ! | TCCATTGAATTAATGTTGAT+TGG | - | chr8.1:17006208-17006227 | MS.gene066088:intron | 25.0% |
| ! | TTTGACACTATGAAAGAAAT+TGG | - | chr8.1:17007489-17007508 | MS.gene066088:CDS | 25.0% |
| !!! | ATTCAAGCTTATGTTTTTGA+TGG | - | chr8.1:17006349-17006368 | MS.gene066088:intron | 25.0% |
| !!! | TACATATGAAGTATTGAAAG+TGG | + | chr8.1:17006149-17006168 | None:intergenic | 25.0% |
| !!! | TTTTATTTAGGCATTTCCTT+TGG | - | chr8.1:17006994-17007013 | MS.gene066088:intron | 25.0% |
| AAATGAAATTGCAAAAGCTG+TGG | - | chr8.1:17006530-17006549 | MS.gene066088:intron | 30.0% | |
| AATCAAATTAACATAGCACC+AGG | + | chr8.1:17006081-17006100 | None:intergenic | 30.0% | |
| ACCATATAAAGAAAACACGT+AGG | + | chr8.1:17006104-17006123 | None:intergenic | 30.0% | |
| ATATAGCAATTCGCGAATAA+AGG | + | chr8.1:17007211-17007230 | None:intergenic | 30.0% | |
| GATATTTGGCAAATAGAACT+CGG | + | chr8.1:17007187-17007206 | None:intergenic | 30.0% | |
| GTACATAAACATGCAATAAG+TGG | - | chr8.1:17006403-17006422 | MS.gene066088:intron | 30.0% | |
| TAACTTTGAATCATCTCAAC+AGG | - | chr8.1:17006622-17006641 | MS.gene066088:intron | 30.0% | |
| TGTCAAAATATTGAGTGACA+AGG | + | chr8.1:17007476-17007495 | None:intergenic | 30.0% | |
| TTATCTCTTTCACTAGTATC+AGG | - | chr8.1:17006123-17006142 | MS.gene066088:CDS | 30.0% | |
| TTTATCTTATTCCCCAAAAG+AGG | - | chr8.1:17006823-17006842 | MS.gene066088:intron | 30.0% | |
| TTTATTGATATGGTGAACTG+TGG | - | chr8.1:17006592-17006611 | MS.gene066088:intron | 30.0% | |
| ! | CTTTATTTGCAAGATCTTCT+CGG | + | chr8.1:17007304-17007323 | None:intergenic | 30.0% |
| ! | GATTTTCAGTTAATGTACCA+GGG | - | chr8.1:17007421-17007440 | MS.gene066088:intron | 30.0% |
| ! | TCCTACGTGTTTTCTTTATA+TGG | - | chr8.1:17006100-17006119 | MS.gene066088:CDS | 30.0% |
| !!! | AGGTTTTGGGAAATTTGAAA+AGG | - | chr8.1:17005839-17005858 | MS.gene066088:CDS | 30.0% |
| !!! | ATTTTTTTTAGGTACCATCC+TGG | - | chr8.1:17006060-17006079 | MS.gene066088:CDS | 30.0% |
| !!! | TGGTTTTAATATTTGCTTGC+AGG | - | chr8.1:17006228-17006247 | MS.gene066088:intron | 30.0% |
| AAATTAACATAGCACCAGGA+TGG | + | chr8.1:17006077-17006096 | None:intergenic | 35.0% | |
| AAGTGTTCCAAAACTCAACT+TGG | - | chr8.1:17006488-17006507 | MS.gene066088:intron | 35.0% | |
| ATAGTAACGAACCTTTGTCT+TGG | + | chr8.1:17005964-17005983 | None:intergenic | 35.0% | |
| ATGTTTATGTACTGCTAAGC+AGG | + | chr8.1:17006395-17006414 | None:intergenic | 35.0% | |
| CATGTATGGAAAACTATGTG+AGG | - | chr8.1:17006920-17006939 | MS.gene066088:intron | 35.0% | |
| CTGAGTCTAAATATCTCTCT+GGG | - | chr8.1:17007340-17007359 | MS.gene066088:intron | 35.0% | |
| GCTATGAATGAAATCAATGC+AGG | - | chr8.1:17006719-17006738 | MS.gene066088:CDS | 35.0% | |
| TCGCGAATAAAGGAGATATT+TGG | + | chr8.1:17007201-17007220 | None:intergenic | 35.0% | |
| TGCAAAAGATGTCATGGATA+TGG | - | chr8.1:17007449-17007468 | MS.gene066088:CDS | 35.0% | |
| TGTTTATGTACTGCTAAGCA+GGG | + | chr8.1:17006394-17006413 | None:intergenic | 35.0% | |
| ! | GGATTTTCAGTTAATGTACC+AGG | - | chr8.1:17007420-17007439 | MS.gene066088:intron | 35.0% |
| ! | TGGCTATGAAAGAAGGTTTT+GGG | - | chr8.1:17005826-17005845 | MS.gene066088:CDS | 35.0% |
| !! | AAACACTGATTGACCTCTTT+TGG | + | chr8.1:17006839-17006858 | None:intergenic | 35.0% |
| !! | AACACTGATTGACCTCTTTT+GGG | + | chr8.1:17006838-17006857 | None:intergenic | 35.0% |
| !! | GTATCATCCAAGTTGAGTTT+TGG | + | chr8.1:17006498-17006517 | None:intergenic | 35.0% |
| !! | TCTAAATATCTCTCTGGGAT+GGG | - | chr8.1:17007345-17007364 | MS.gene066088:intron | 35.0% |
| !!! | CTTGTTTTGTTGCTTCTTTG+GGG | - | chr8.1:17007017-17007036 | MS.gene066088:intron | 35.0% |
| !!! | GCTTGTTTTGTTGCTTCTTT+GGG | - | chr8.1:17007016-17007035 | MS.gene066088:intron | 35.0% |
| AATGAACACAGCAGAAGACT+TGG | + | chr8.1:17007523-17007542 | None:intergenic | 40.0% | |
| CAAATGTGAGACCAAGACAA+AGG | - | chr8.1:17005950-17005969 | MS.gene066088:CDS | 40.0% | |
| CATGGAATGACATGAACACT+TGG | + | chr8.1:17006004-17006023 | None:intergenic | 40.0% | |
| GAAGCAACAAAACAAGCCAA+AGG | + | chr8.1:17007013-17007032 | None:intergenic | 40.0% | |
| GCTGAGTCTAAATATCTCTC+TGG | - | chr8.1:17007339-17007358 | MS.gene066088:intron | 40.0% | |
| TCCTTGGAAAACGAATTGCT+GGG | - | chr8.1:17005895-17005914 | MS.gene066088:CDS | 40.0% | |
| TCTCAAGTGGCTATGAAAGA+AGG | - | chr8.1:17005819-17005838 | MS.gene066088:CDS | 40.0% | |
| TGTGGAAGAAGAACTTGAGA+AGG | - | chr8.1:17006548-17006567 | MS.gene066088:intron | 40.0% | |
| TTCACGTAATAGCAATGCTG+TGG | + | chr8.1:17006773-17006792 | None:intergenic | 40.0% | |
| TTCCTTGGAAAACGAATTGC+TGG | - | chr8.1:17005894-17005913 | MS.gene066088:CDS | 40.0% | |
| TTCTATTCAATACCGTGCCT+TGG | - | chr8.1:17006276-17006295 | MS.gene066088:intron | 40.0% | |
| ! | ATTCGTTTTCCAAGGAACCA+TGG | + | chr8.1:17005891-17005910 | None:intergenic | 40.0% |
| ! | GTCTAAATATCTCTCTGGGA+TGG | - | chr8.1:17007344-17007363 | MS.gene066088:intron | 40.0% |
| ! | GTGGCTATGAAAGAAGGTTT+TGG | - | chr8.1:17005825-17005844 | MS.gene066088:CDS | 40.0% |
| !! | ACACTGATTGACCTCTTTTG+GGG | + | chr8.1:17006837-17006856 | None:intergenic | 40.0% |
| !! | ATTTGAAAAGGTGCTTCAGC+CGG | - | chr8.1:17005851-17005870 | MS.gene066088:CDS | 40.0% |
| !! | GCAAGTTGATCAATCTCAAG+TGG | - | chr8.1:17005806-17005825 | MS.gene066088:CDS | 40.0% |
| !!! | GGCTTGTTTTGTTGCTTCTT+TGG | - | chr8.1:17007015-17007034 | MS.gene066088:intron | 40.0% |
| AACATAGCATGACCGCCTAT+TGG | + | chr8.1:17007044-17007063 | None:intergenic | 45.0% | |
| AAGAATGAGGTTGGCAGCTA+AGG | - | chr8.1:17007266-17007285 | MS.gene066088:intron | 45.0% | |
| ACTGATGAGATAGAGAACCC+TGG | + | chr8.1:17007602-17007621 | None:intergenic | 45.0% | |
| ATCAGCTGCAAGAATGAGGT+TGG | - | chr8.1:17007257-17007276 | MS.gene066088:intron | 45.0% | |
| CAACAGGCTATGTCAGCTTA+TGG | - | chr8.1:17006638-17006657 | MS.gene066088:intron | 45.0% | |
| CAACGTCAAGCTATTGTGGA+TGG | - | chr8.1:17007378-17007397 | MS.gene066088:intron | 45.0% | |
| CACGGTTCGTCATACATGTA+TGG | - | chr8.1:17006906-17006925 | MS.gene066088:CDS | 45.0% | |
| CATCCACAATAGCTTGACGT+TGG | + | chr8.1:17007380-17007399 | None:intergenic | 45.0% | |
| CTCTCTTCGGGTACAACAAT+TGG | - | chr8.1:17005923-17005942 | MS.gene066088:CDS | 45.0% | |
| GACGACTGCAAAAGATGTCA+TGG | - | chr8.1:17007443-17007462 | MS.gene066088:CDS | 45.0% | |
| GGAGAAGTCCATCACGAATT+TGG | + | chr8.1:17007581-17007600 | None:intergenic | 45.0% | |
| GGTTTGAGAGACAGTGTGAT+TGG | - | chr8.1:17007399-17007418 | MS.gene066088:intron | 45.0% | |
| GTTGCTAGCCAAATTCGTGA+TGG | - | chr8.1:17007570-17007589 | MS.gene066088:CDS | 45.0% | |
| TACATGTATGACGAACCGTG+AGG | + | chr8.1:17006906-17006925 | None:intergenic | 45.0% | |
| TAGGCGGTCATGCTATGTTA+TGG | - | chr8.1:17007045-17007064 | MS.gene066088:CDS | 45.0% | |
| TCTGCTGTGTTCATTCCACA+TGG | - | chr8.1:17007528-17007547 | MS.gene066088:CDS | 45.0% | |
| TGTACTGCTAAGCAGGGTTA+TGG | + | chr8.1:17006388-17006407 | None:intergenic | 45.0% | |
| TGTGATCAGCTGCAAGAATG+AGG | - | chr8.1:17007253-17007272 | MS.gene066088:intron | 45.0% | |
| TTGCAAATAAAGCGAGCCGA+GGG | - | chr8.1:17007312-17007331 | MS.gene066088:intron | 45.0% | |
| !! | AATTCGTGATGGACTTCTCC+AGG | - | chr8.1:17007581-17007600 | MS.gene066088:CDS | 45.0% |
| !! | ATCATTAGCCTTGTCTGCCA+AGG | + | chr8.1:17006296-17006315 | None:intergenic | 45.0% |
| !! | ATTCGTGATGGACTTCTCCA+GGG | - | chr8.1:17007582-17007601 | MS.gene066088:CDS | 45.0% |
| !! | TTGCTTCTTTGGGGTCCAAT+AGG | - | chr8.1:17007026-17007045 | MS.gene066088:intron | 45.0% |
| !! | TTTGAAAAGGTGCTTCAGCC+GGG | - | chr8.1:17005852-17005871 | MS.gene066088:CDS | 45.0% |
| AGCCAGATGTCCATGTGAAG+CGG | - | chr8.1:17006696-17006715 | MS.gene066088:CDS | 50.0% | |
| ATGACGAACCGTGAGGACAA+GGG | + | chr8.1:17006899-17006918 | None:intergenic | 50.0% | |
| CAAGGAACCATGGCATGCAA+TGG | + | chr8.1:17005881-17005900 | None:intergenic | 50.0% | |
| CATTCATAGCCCGCTTCACA+TGG | + | chr8.1:17006709-17006728 | None:intergenic | 50.0% | |
| CATTGCATGCCATGGTTCCT+TGG | - | chr8.1:17005879-17005898 | MS.gene066088:CDS | 50.0% | |
| CTTGCAAATAAAGCGAGCCG+AGG | - | chr8.1:17007311-17007330 | MS.gene066088:intron | 50.0% | |
| GAACACAGCAGAAGACTTGG+AGG | + | chr8.1:17007520-17007539 | None:intergenic | 50.0% | |
| GTGTTCATTCCACATGGACC+TGG | - | chr8.1:17007534-17007553 | MS.gene066088:CDS | 50.0% | |
| TATGACGAACCGTGAGGACA+AGG | + | chr8.1:17006900-17006919 | None:intergenic | 50.0% | |
| TCGCCAACGTCAAGCTATTG+TGG | - | chr8.1:17007374-17007393 | MS.gene066088:intron | 50.0% | |
| TTGCTGGGCATCTCTCTCTT+CGG | - | chr8.1:17005910-17005929 | MS.gene066088:CDS | 50.0% | |
| TTTAGACTCAGCCTCACCCT+CGG | + | chr8.1:17007331-17007350 | None:intergenic | 50.0% | |
| ! | ACATCTTTTGCAGTCGTCCC+TGG | + | chr8.1:17007441-17007460 | None:intergenic | 50.0% |
| ! | GCCCAGCAATTCGTTTTCCA+AGG | + | chr8.1:17005899-17005918 | None:intergenic | 50.0% |
| !! | CTTCTTTGGGGTCCAATAGG+CGG | - | chr8.1:17007029-17007048 | MS.gene066088:intron | 50.0% |
| AATAAAGCGAGCCGAGGGTG+AGG | - | chr8.1:17007317-17007336 | MS.gene066088:intron | 55.0% | |
| AATGCCTGCCCTTGTCCTCA+CGG | - | chr8.1:17006888-17006907 | MS.gene066088:CDS | 55.0% | |
| ATACCGTGCCTTGGCAGACA+AGG | - | chr8.1:17006285-17006304 | MS.gene066088:intron | 55.0% | |
| CATGGCATGCAATGGCATCC+CGG | + | chr8.1:17005873-17005892 | None:intergenic | 55.0% | |
| GAGGTTGGCAGCTAAGGAGA+AGG | - | chr8.1:17007272-17007291 | MS.gene066088:intron | 55.0% | |
| GCCAGATGTCCATGTGAAGC+GGG | - | chr8.1:17006697-17006716 | MS.gene066088:CDS | 55.0% | |
| TGCTGGGCATCTCTCTCTTC+GGG | - | chr8.1:17005911-17005930 | MS.gene066088:CDS | 55.0% | |
| !! | TAGCCTTGTCTGCCAAGGCA+CGG | + | chr8.1:17006291-17006310 | None:intergenic | 55.0% |
| CGAACAGCACCAGGTCCATG+TGG | + | chr8.1:17007546-17007565 | None:intergenic | 60.0% | |
| CGGGATGCCATTGCATGCCA+TGG | - | chr8.1:17005871-17005890 | MS.gene066088:CDS | 60.0% | |
| GCAACATCGCGAACAGCACC+AGG | + | chr8.1:17007555-17007574 | None:intergenic | 60.0% | |
| GCCCGCTTCACATGGACATC+TGG | + | chr8.1:17006701-17006720 | None:intergenic | 60.0% | |
| GGCAGCTAAGGAGAAGGCTG+AGG | - | chr8.1:17007278-17007297 | MS.gene066088:intron | 60.0% | |
| CGAACCGTGAGGACAAGGGC+AGG | + | chr8.1:17006895-17006914 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 17005783 | 17007623 | 17005783 | ID=MS.gene066088 |
| chr8.1 | mRNA | 17005783 | 17007623 | 17005783 | ID=MS.gene066088.t1;Parent=MS.gene066088 |
| chr8.1 | exon | 17007435 | 17007623 | 17007435 | ID=MS.gene066088.t1.exon1;Parent=MS.gene066088.t1 |
| chr8.1 | CDS | 17007435 | 17007623 | 17007435 | ID=cds.MS.gene066088.t1;Parent=MS.gene066088.t1 |
| chr8.1 | exon | 17007036 | 17007156 | 17007036 | ID=MS.gene066088.t1.exon2;Parent=MS.gene066088.t1 |
| chr8.1 | CDS | 17007036 | 17007156 | 17007036 | ID=cds.MS.gene066088.t1;Parent=MS.gene066088.t1 |
| chr8.1 | exon | 17006837 | 17006928 | 17006837 | ID=MS.gene066088.t1.exon3;Parent=MS.gene066088.t1 |
| chr8.1 | CDS | 17006837 | 17006928 | 17006837 | ID=cds.MS.gene066088.t1;Parent=MS.gene066088.t1 |
| chr8.1 | exon | 17006666 | 17006762 | 17006666 | ID=MS.gene066088.t1.exon4;Parent=MS.gene066088.t1 |
| chr8.1 | CDS | 17006666 | 17006762 | 17006666 | ID=cds.MS.gene066088.t1;Parent=MS.gene066088.t1 |
| chr8.1 | exon | 17005783 | 17006144 | 17005783 | ID=MS.gene066088.t1.exon5;Parent=MS.gene066088.t1 |
| chr8.1 | CDS | 17005783 | 17006144 | 17005783 | ID=cds.MS.gene066088.t1;Parent=MS.gene066088.t1 |
| Gene Sequence |
| Protein sequence |
