Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066091.t1 | XP_003608997.2 | 95.8 | 286 | 12 | 0 | 1 | 286 | 1 | 286 | 6.50E-150 | 540 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066091.t1 | Q5GI04 | 87.4 | 285 | 36 | 0 | 1 | 285 | 1 | 285 | 8.0e-141 | 501.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066091.t1 | G7JPW8 | 95.8 | 286 | 12 | 0 | 1 | 286 | 1 | 286 | 4.7e-150 | 540.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene066091 | MS.gene59292 | PPI |
| MS.gene066091 | MS.gene68929 | PPI |
| MS.gene066091 | MS.gene029948 | PPI |
| MS.gene066091 | MS.gene030984 | PPI |
| MS.gene066091 | MS.gene028857 | PPI |
| MS.gene31416 | MS.gene066091 | PPI |
| MS.gene066091 | MS.gene043467 | PPI |
| MS.gene066091 | MS.gene20481 | PPI |
| MS.gene066091 | MS.gene055768 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066091.t1 | MTR_4g107830 | 92.256 | 297 | 8 | 1 | 1 | 282 | 1 | 297 | 0.0 | 557 |
| MS.gene066091.t1 | MTR_4g107810 | 95.804 | 286 | 12 | 0 | 1 | 286 | 1 | 286 | 0.0 | 553 |
| MS.gene066091.t1 | MTR_4g107760 | 95.804 | 286 | 12 | 0 | 1 | 286 | 1 | 286 | 0.0 | 553 |
| MS.gene066091.t1 | MTR_4g107810 | 95.804 | 286 | 12 | 0 | 1 | 286 | 61 | 346 | 0.0 | 552 |
| MS.gene066091.t1 | MTR_4g107720 | 94.326 | 282 | 16 | 0 | 1 | 282 | 1 | 282 | 0.0 | 536 |
| MS.gene066091.t1 | MTR_6g011380 | 83.688 | 282 | 46 | 0 | 1 | 282 | 1 | 282 | 7.37e-180 | 497 |
| MS.gene066091.t1 | MTR_8g469160 | 79.859 | 283 | 57 | 0 | 1 | 283 | 1 | 283 | 2.90e-177 | 490 |
| MS.gene066091.t1 | MTR_4g107730 | 87.153 | 288 | 29 | 3 | 1 | 286 | 1 | 282 | 3.22e-177 | 490 |
| MS.gene066091.t1 | MTR_6g460470 | 56.690 | 284 | 121 | 1 | 1 | 282 | 1 | 284 | 8.19e-117 | 337 |
| MS.gene066091.t1 | MTR_4g107700 | 96.296 | 81 | 3 | 0 | 202 | 282 | 6 | 86 | 1.26e-49 | 159 |
| MS.gene066091.t1 | MTR_3g093220 | 30.055 | 183 | 122 | 4 | 19 | 199 | 71 | 249 | 2.62e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066091.t1 | AT5G62740 | 89.362 | 282 | 30 | 0 | 1 | 282 | 1 | 282 | 0.0 | 530 |
| MS.gene066091.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene066091.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene066091.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene066091.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene066091.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene066091.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene066091.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene066091.t1 | AT3G01290 | 78.723 | 282 | 60 | 0 | 1 | 282 | 1 | 282 | 5.75e-170 | 472 |
| MS.gene066091.t1 | AT5G51570 | 57.042 | 284 | 120 | 1 | 1 | 282 | 1 | 284 | 7.71e-122 | 350 |
Find 63 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACACTATGAAAGAAAT+TGG | 0.142368 | 8.1:-16985930 | MS.gene066091:CDS |
| ATGTTCTCATTGCAGTAATT+AGG | 0.205184 | 8.1:-16986952 | MS.gene066091:intron |
| GCCTTCTTCACATGCTTATC+TGG | 0.244299 | 8.1:+16986716 | None:intergenic |
| GGAGAAGTCCATCACGAATT+TGG | 0.279174 | 8.1:+16985841 | None:intergenic |
| GTATCATCCAAGTTGAGTTT+TGG | 0.298817 | 8.1:+16986920 | None:intergenic |
| CTCTCTTCGGGTTCAACAAT+TGG | 0.301031 | 8.1:-16987491 | MS.gene066091:CDS |
| TGTTCTCATTGCAGTAATTA+GGG | 0.306159 | 8.1:-16986951 | MS.gene066091:intron |
| TGCTGGTCATCTCTCTCTTC+GGG | 0.329796 | 8.1:-16987503 | MS.gene066091:CDS |
| TTGACACTATGAAAGAAATT+GGG | 0.344707 | 8.1:-16985929 | MS.gene066091:CDS |
| CAACAGGCTATGTCAGCTTA+TGG | 0.345528 | 8.1:-16986776 | MS.gene066091:intron |
| TTGCTGGTCATCTCTCTCTT+CGG | 0.350694 | 8.1:-16987504 | MS.gene066091:CDS |
| GTGGCTATGAAAGAAGGTTT+TGG | 0.357672 | 8.1:-16987589 | MS.gene066091:CDS |
| TTCCTTGGAAAACGAATTGC+TGG | 0.386474 | 8.1:-16987520 | MS.gene066091:CDS |
| GGATTGAGAGACAGTGTGAT+TGG | 0.394088 | 8.1:-16986020 | MS.gene066091:CDS |
| GCCAGATAAGCATGTGAAGA+AGG | 0.431501 | 8.1:-16986717 | MS.gene066091:CDS |
| AATTCGTGATGGACTTCTCC+AGG | 0.436039 | 8.1:-16985838 | MS.gene066091:CDS |
| TGCAAAAGATGTCATGGATA+TGG | 0.437735 | 8.1:-16985970 | MS.gene066091:CDS |
| ATTTGAAAAGGTGCTTCAGC+CGG | 0.463345 | 8.1:-16987563 | MS.gene066091:CDS |
| CATTGCATGCCATGGTTCCT+TGG | 0.471591 | 8.1:-16987535 | MS.gene066091:CDS |
| GTCTAAATATCTCGCTGGGA+TGG | 0.480437 | 8.1:-16986075 | MS.gene066091:CDS |
| TTCTATTCAATACCGTGCCT+TGG | 0.481733 | 8.1:-16987123 | MS.gene066091:CDS |
| ATCGTTTGCCTTGTTTGCCA+AGG | 0.508315 | 8.1:+16987106 | None:intergenic |
| TAACAAACCAACCTTTGTCT+TGG | 0.511154 | 8.1:+16987453 | None:intergenic |
| TCTCAAGTGGCTATGAAAGA+AGG | 0.511380 | 8.1:-16987595 | MS.gene066091:CDS |
| TTTGAAAAGGTGCTTCAGCC+GGG | 0.514758 | 8.1:-16987562 | MS.gene066091:CDS |
| CATGGCATGCAATGGCATCC+CGG | 0.521469 | 8.1:+16987544 | None:intergenic |
| AATGAACACAGCAGAAGACT+TGG | 0.521852 | 8.1:+16985899 | None:intergenic |
| TCTAAATATCTCGCTGGGAT+GGG | 0.525100 | 8.1:-16986074 | MS.gene066091:CDS |
| TTGCCTTGTTTGCCAAGGCA+CGG | 0.526106 | 8.1:+16987111 | None:intergenic |
| GTGTTCATTCCACATGGACC+TGG | 0.527747 | 8.1:-16985885 | MS.gene066091:CDS |
| CAACGTCAAGCCATTGTGGA+TGG | 0.529578 | 8.1:-16986041 | MS.gene066091:CDS |
| CGGGATGCCATTGCATGCCA+TGG | 0.534181 | 8.1:-16987543 | MS.gene066091:CDS |
| AATAAAGCGAGCCGAGGGTG+AGG | 0.551044 | 8.1:-16986102 | MS.gene066091:CDS |
| GCTGAGTCTAAATATCTCGC+TGG | 0.552574 | 8.1:-16986080 | MS.gene066091:CDS |
| GACAAGTGCAAAAGATGTCA+TGG | 0.553387 | 8.1:-16985976 | MS.gene066091:CDS |
| CAGTGTTCCAAAACTCAACT+TGG | 0.553554 | 8.1:-16986927 | MS.gene066091:CDS |
| TATGATTAGCTGCAAGAATG+AGG | 0.556005 | 8.1:-16986166 | MS.gene066091:intron |
| GCAACATCGCGAACAGCACC+AGG | 0.556632 | 8.1:+16985867 | None:intergenic |
| GCTATGAATGAAATCAATGC+TGG | 0.558940 | 8.1:-16986695 | MS.gene066091:intron |
| TCTGCTGTGTTCATTCCACA+TGG | 0.564187 | 8.1:-16985891 | MS.gene066091:CDS |
| ATACCGTGCCTTGGCAAACA+AGG | 0.570829 | 8.1:-16987114 | MS.gene066091:CDS |
| GAACACAGCAGAAGACTTGG+AGG | 0.574169 | 8.1:+16985902 | None:intergenic |
| TGACACTATGAAAGAAATTG+GGG | 0.579718 | 8.1:-16985928 | MS.gene066091:CDS |
| CTGAGTCTAAATATCTCGCT+GGG | 0.580679 | 8.1:-16986079 | MS.gene066091:CDS |
| CAAGGAACCATGGCATGCAA+TGG | 0.581813 | 8.1:+16987536 | None:intergenic |
| TTTAGACTCAGCCTCACCCT+CGG | 0.596378 | 8.1:+16986091 | None:intergenic |
| AAATGAAATTGCAAAAGCTG+TGG | 0.603554 | 8.1:-16986885 | MS.gene066091:CDS |
| TGTGGAAGAAGAACTTGAGA+AGG | 0.603618 | 8.1:-16986867 | MS.gene066091:intron |
| ACTCATGAGTTAGAGAACCC+TGG | 0.616759 | 8.1:+16985820 | None:intergenic |
| GCAAGTTGATCAATCTCAAG+TGG | 0.619072 | 8.1:-16987608 | MS.gene066091:CDS |
| GTTGCTAGCCAAATTCGTGA+TGG | 0.622218 | 8.1:-16985849 | MS.gene066091:CDS |
| TACAAACTTAGCAACACAAG+GGG | 0.623209 | 8.1:-16987077 | MS.gene066091:CDS |
| TTTACAAACTTAGCAACACA+AGG | 0.632164 | 8.1:-16987079 | MS.gene066091:CDS |
| GAGGATCGCAGCTAATGAGA+AGG | 0.632818 | 8.1:-16986147 | MS.gene066091:CDS |
| ATTCGTGATGGACTTCTCCA+GGG | 0.634995 | 8.1:-16985837 | MS.gene066091:CDS |
| CTTGCAAATAAAGCGAGCCG+AGG | 0.639259 | 8.1:-16986108 | MS.gene066091:CDS |
| TCGTCAACGTCAAGCCATTG+TGG | 0.640251 | 8.1:-16986045 | MS.gene066091:CDS |
| CAAATGTGAGACCAAGACAA+AGG | 0.650717 | 8.1:-16987464 | MS.gene066091:intron |
| TTGCAAATAAAGCGAGCCGA+GGG | 0.652348 | 8.1:-16986107 | MS.gene066091:CDS |
| GTCTCTCAATCCATCCACAA+TGG | 0.662038 | 8.1:+16986031 | None:intergenic |
| CGAACAGCACCAGGTCCATG+TGG | 0.675254 | 8.1:+16985876 | None:intergenic |
| TTACAAACTTAGCAACACAA+GGG | 0.685367 | 8.1:-16987078 | MS.gene066091:CDS |
| TGTCAAAGTATTGAGTGACA+AGG | 0.713018 | 8.1:+16985946 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATAATAACAATATTGT+GGG | + | chr8.1:16986807-16986826 | None:intergenic | 10.0% |
| !! | AATAAAAATTAAAATTATCC+CGG | + | chr8.1:16986097-16986116 | None:intergenic | 10.0% |
| !! | TAAATATAATAACAATATTG+TGG | + | chr8.1:16986808-16986827 | None:intergenic | 10.0% |
| !! | TTATTTATATGAATTAAACT+TGG | - | chr8.1:16986825-16986844 | MS.gene066091:intron | 10.0% |
| !!! | GGATAATTTTAATTTTTATT+AGG | - | chr8.1:16986097-16986116 | MS.gene066091:CDS | 10.0% |
| !! | AATATAATAACAATATTGTG+GGG | + | chr8.1:16986806-16986825 | None:intergenic | 15.0% |
| !! | TTTAATATTTATTTGCTTGT+AGG | - | chr8.1:16986278-16986297 | MS.gene066091:intron | 15.0% |
| !!! | TTTATTTTATTCTCTAAAAG+AGG | - | chr8.1:16986870-16986889 | MS.gene066091:CDS | 15.0% |
| !! | AAAAATTTGAGAACAATGTA+CGG | + | chr8.1:16986236-16986255 | None:intergenic | 20.0% |
| !! | ACAATTAGTATTTACAGATA+AGG | - | chr8.1:16986617-16986636 | MS.gene066091:intron | 20.0% |
| !! | ATGTAACAAAAAACTATGTA+GGG | - | chr8.1:16986942-16986961 | MS.gene066091:intron | 20.0% |
| !! | CCATAGTTAAGAAAATATAT+AGG | + | chr8.1:16986152-16986171 | None:intergenic | 20.0% |
| !!! | ATTTATTTTGGAATTAACTC+CGG | - | chr8.1:16987025-16987044 | MS.gene066091:intron | 20.0% |
| !!! | CCTATATATTTTCTTAACTA+TGG | - | chr8.1:16986149-16986168 | MS.gene066091:CDS | 20.0% |
| !!! | TTTTGCTGCAAAATTTATTT+TGG | - | chr8.1:16987013-16987032 | MS.gene066091:intron | 20.0% |
| ! | AATCAAAATAACATAGCACA+AGG | + | chr8.1:16986129-16986148 | None:intergenic | 25.0% |
| ! | CATGTAACAAAAAACTATGT+AGG | - | chr8.1:16986941-16986960 | MS.gene066091:intron | 25.0% |
| ! | GGAAACAGTATATGAAAATA+TGG | + | chr8.1:16987259-16987278 | None:intergenic | 25.0% |
| ! | TTGACACTATGAAAGAAATT+GGG | - | chr8.1:16987520-16987539 | MS.gene066091:CDS | 25.0% |
| ! | TTTGACACTATGAAAGAAAT+TGG | - | chr8.1:16987519-16987538 | MS.gene066091:CDS | 25.0% |
| !! | ATTGTTCTCAAATTTTTCCA+TGG | - | chr8.1:16986239-16986258 | MS.gene066091:intron | 25.0% |
| !! | TTGTTCTCAAATTTTTCCAT+GGG | - | chr8.1:16986240-16986259 | MS.gene066091:intron | 25.0% |
| !!! | AGGTTTTGGAAAATTTGAAA+AGG | - | chr8.1:16985874-16985893 | MS.gene066091:CDS | 25.0% |
| !!! | ATTCAAGCTTATGTTTTTGA+TGG | - | chr8.1:16986399-16986418 | MS.gene066091:intron | 25.0% |
| AAATGAAATTGCAAAAGCTG+TGG | - | chr8.1:16986564-16986583 | MS.gene066091:intron | 30.0% | |
| ACAAATCAACATTTATCCCA+TGG | + | chr8.1:16986259-16986278 | None:intergenic | 30.0% | |
| AGCAATAAACATGCAATTAC+TGG | - | chr8.1:16986442-16986461 | MS.gene066091:intron | 30.0% | |
| ATCATAGCATAACCAACTAT+TGG | + | chr8.1:16987072-16987091 | None:intergenic | 30.0% | |
| ATGTTCTCATTGCAGTAATT+AGG | - | chr8.1:16986497-16986516 | MS.gene066091:intron | 30.0% | |
| CAAAAACATAAGCTTGAATC+TGG | + | chr8.1:16986398-16986417 | None:intergenic | 30.0% | |
| TAGTTGGTTATGCTATGATA+TGG | - | chr8.1:16987073-16987092 | MS.gene066091:CDS | 30.0% | |
| TGACACTATGAAAGAAATTG+GGG | - | chr8.1:16987521-16987540 | MS.gene066091:CDS | 30.0% | |
| TGTTCTCATTGCAGTAATTA+GGG | - | chr8.1:16986498-16986517 | MS.gene066091:intron | 30.0% | |
| TTACAAACTTAGCAACACAA+GGG | - | chr8.1:16986371-16986390 | MS.gene066091:intron | 30.0% | |
| TTTACAAACTTAGCAACACA+AGG | - | chr8.1:16986370-16986389 | MS.gene066091:intron | 30.0% | |
| TTTGTTACATGTAAGACGTA+CGG | + | chr8.1:16986932-16986951 | None:intergenic | 30.0% | |
| ! | AATTTTGCAGCAAAAGACTT+AGG | + | chr8.1:16987008-16987027 | None:intergenic | 30.0% |
| ATATGGTAATCCAAGAGCAA+AGG | + | chr8.1:16987242-16987261 | None:intergenic | 35.0% | |
| ATCCATGTGATTGATAAGCA+TGG | + | chr8.1:16986061-16986080 | None:intergenic | 35.0% | |
| CCAAATATATCCTTTGCTCT+TGG | - | chr8.1:16987229-16987248 | MS.gene066091:intron | 35.0% | |
| CCAAGAGCAAAGGATATATT+TGG | + | chr8.1:16987232-16987251 | None:intergenic | 35.0% | |
| GCTATGAATGAAATCAATGC+TGG | - | chr8.1:16986754-16986773 | MS.gene066091:CDS | 35.0% | |
| TAACAAACCAACCTTTGTCT+TGG | + | chr8.1:16985999-16986018 | None:intergenic | 35.0% | |
| TAACTTTGAATCGTCTCAAC+AGG | - | chr8.1:16986657-16986676 | MS.gene066091:intron | 35.0% | |
| TACAAACTTAGCAACACAAG+GGG | - | chr8.1:16986372-16986391 | MS.gene066091:intron | 35.0% | |
| TATATTTGGCACATAGCACT+CGG | + | chr8.1:16987218-16987237 | None:intergenic | 35.0% | |
| TCACATGGATACTTTCTCTT+TGG | - | chr8.1:16986071-16986090 | MS.gene066091:CDS | 35.0% | |
| TGCAAAAGATGTCATGGATA+TGG | - | chr8.1:16987479-16987498 | MS.gene066091:CDS | 35.0% | |
| TGCATGTTTATTGCTAAGCA+GGG | + | chr8.1:16986437-16986456 | None:intergenic | 35.0% | |
| TGTGATTGATAAGCATGGAA+TGG | + | chr8.1:16986056-16986075 | None:intergenic | 35.0% | |
| TTCCATGCTTATCAATCACA+TGG | - | chr8.1:16986056-16986075 | MS.gene066091:CDS | 35.0% | |
| TTGCATGTTTATTGCTAAGC+AGG | + | chr8.1:16986438-16986457 | None:intergenic | 35.0% | |
| TTTACAGATAAGGTGAACTG+AGG | - | chr8.1:16986627-16986646 | MS.gene066091:intron | 35.0% | |
| ! | GATTTTCAGAGAATGTACCA+GGG | - | chr8.1:16987451-16987470 | MS.gene066091:intron | 35.0% |
| ! | TATGATTAGCTGCAAGAATG+AGG | - | chr8.1:16987283-16987302 | MS.gene066091:intron | 35.0% |
| !! | GTATCATCCAAGTTGAGTTT+TGG | + | chr8.1:16986532-16986551 | None:intergenic | 35.0% |
| !! | TATACACAGAGTACTGAAAG+TGG | + | chr8.1:16986197-16986216 | None:intergenic | 35.0% |
| !! | TGTCAAAGTATTGAGTGACA+AGG | + | chr8.1:16987506-16987525 | None:intergenic | 35.0% |
| !!! | TTTTGGAATTAACTCCGGTT+TGG | - | chr8.1:16987030-16987049 | MS.gene066091:intron | 35.0% |
| AAGACGTACGGTAAGGAAAA+AGG | + | chr8.1:16986920-16986939 | None:intergenic | 40.0% | |
| AAGACTTAGGATCAGATGCT+TGG | + | chr8.1:16986995-16987014 | None:intergenic | 40.0% | |
| AATATTGTGGGGACATCTCA+TGG | + | chr8.1:16986795-16986814 | None:intergenic | 40.0% | |
| AATGAACACAGCAGAAGACT+TGG | + | chr8.1:16987553-16987572 | None:intergenic | 40.0% | |
| ATGGATACTTTCTCTTTGGC+CGG | - | chr8.1:16986075-16986094 | MS.gene066091:CDS | 40.0% | |
| CAAATGTGAGACCAAGACAA+AGG | - | chr8.1:16985985-16986004 | MS.gene066091:CDS | 40.0% | |
| CAGTGTTCCAAAACTCAACT+TGG | - | chr8.1:16986522-16986541 | MS.gene066091:intron | 40.0% | |
| CATGGAATGGCATGAAGATT+TGG | + | chr8.1:16986043-16986062 | None:intergenic | 40.0% | |
| CTCAAAGAAGCAAACCAAAC+CGG | + | chr8.1:16987047-16987066 | None:intergenic | 40.0% | |
| CTGAGTCTAAATATCTCGCT+GGG | - | chr8.1:16987370-16987389 | MS.gene066091:intron | 40.0% | |
| GACAAGTGCAAAAGATGTCA+TGG | - | chr8.1:16987473-16987492 | MS.gene066091:CDS | 40.0% | |
| TACATGTAAGACGTACGGTA+AGG | + | chr8.1:16986927-16986946 | None:intergenic | 40.0% | |
| TCTAAATATCTCGCTGGGAT+GGG | - | chr8.1:16987375-16987394 | MS.gene066091:intron | 40.0% | |
| TCTCAAGTGGCTATGAAAGA+AGG | - | chr8.1:16985854-16985873 | MS.gene066091:CDS | 40.0% | |
| TCTTGCAGCTAATCATAGAC+AGG | + | chr8.1:16987280-16987299 | None:intergenic | 40.0% | |
| TGTGGAAGAAGAACTTGAGA+AGG | - | chr8.1:16986582-16986601 | MS.gene066091:intron | 40.0% | |
| TTCCTTGGAAAACGAATTGC+TGG | - | chr8.1:16985929-16985948 | MS.gene066091:CDS | 40.0% | |
| TTCTATTCAATACCGTGCCT+TGG | - | chr8.1:16986326-16986345 | MS.gene066091:intron | 40.0% | |
| ! | ATTCGTTTTCCAAGGAACCA+TGG | + | chr8.1:16985926-16985945 | None:intergenic | 40.0% |
| ! | GGATTTTCAGAGAATGTACC+AGG | - | chr8.1:16987450-16987469 | MS.gene066091:intron | 40.0% |
| ! | GTGGCTATGAAAGAAGGTTT+TGG | - | chr8.1:16985860-16985879 | MS.gene066091:CDS | 40.0% |
| !! | ATTTGAAAAGGTGCTTCAGC+CGG | - | chr8.1:16985886-16985905 | MS.gene066091:CDS | 40.0% |
| !! | CTTCTTTGAGGTCCAATAGT+TGG | - | chr8.1:16987057-16987076 | MS.gene066091:CDS | 40.0% |
| !! | GCAAGTTGATCAATCTCAAG+TGG | - | chr8.1:16985841-16985860 | MS.gene066091:CDS | 40.0% |
| !!! | CAAGTTGAGTTTTGGAACAC+TGG | + | chr8.1:16986524-16986543 | None:intergenic | 40.0% |
| ACTCATGAGTTAGAGAACCC+TGG | + | chr8.1:16987632-16987651 | None:intergenic | 45.0% | |
| CAACAGGCTATGTCAGCTTA+TGG | - | chr8.1:16986673-16986692 | MS.gene066091:intron | 45.0% | |
| CGTACGGTAAGGAAAAAGGT+AGG | + | chr8.1:16986916-16986935 | None:intergenic | 45.0% | |
| GCCAGATAAGCATGTGAAGA+AGG | - | chr8.1:16986732-16986751 | MS.gene066091:CDS | 45.0% | |
| GCCTTCTTCACATGCTTATC+TGG | + | chr8.1:16986736-16986755 | None:intergenic | 45.0% | |
| GCTGAGTCTAAATATCTCGC+TGG | - | chr8.1:16987369-16987388 | MS.gene066091:intron | 45.0% | |
| GGAGAAGTCCATCACGAATT+TGG | + | chr8.1:16987611-16987630 | None:intergenic | 45.0% | |
| GGATTGAGAGACAGTGTGAT+TGG | - | chr8.1:16987429-16987448 | MS.gene066091:intron | 45.0% | |
| GTCTAAATATCTCGCTGGGA+TGG | - | chr8.1:16987374-16987393 | MS.gene066091:intron | 45.0% | |
| GTCTCTCAATCCATCCACAA+TGG | + | chr8.1:16987421-16987440 | None:intergenic | 45.0% | |
| GTTGCTAGCCAAATTCGTGA+TGG | - | chr8.1:16987600-16987619 | MS.gene066091:CDS | 45.0% | |
| TCTGCTGTGTTCATTCCACA+TGG | - | chr8.1:16987558-16987577 | MS.gene066091:CDS | 45.0% | |
| TGGATACTTTCTCTTTGGCC+GGG | - | chr8.1:16986076-16986095 | MS.gene066091:CDS | 45.0% | |
| TGTGAGACCAAGACAAAGGT+TGG | - | chr8.1:16985989-16986008 | MS.gene066091:CDS | 45.0% | |
| TTGCAAATAAAGCGAGCCGA+GGG | - | chr8.1:16987342-16987361 | MS.gene066091:intron | 45.0% | |
| TTGCTGGTCATCTCTCTCTT+CGG | - | chr8.1:16985945-16985964 | MS.gene066091:CDS | 45.0% | |
| ! | ACATCTTTTGCACTTGTCCC+TGG | + | chr8.1:16987471-16987490 | None:intergenic | 45.0% |
| ! | CTCTCTTCGGGTTCAACAAT+TGG | - | chr8.1:16985958-16985977 | MS.gene066091:CDS | 45.0% |
| ! | GACCAGCAATTCGTTTTCCA+AGG | + | chr8.1:16985934-16985953 | None:intergenic | 45.0% |
| !! | AATTCGTGATGGACTTCTCC+AGG | - | chr8.1:16987611-16987630 | MS.gene066091:CDS | 45.0% |
| !! | ATCGTTTGCCTTGTTTGCCA+AGG | + | chr8.1:16986346-16986365 | None:intergenic | 45.0% |
| !! | ATTCGTGATGGACTTCTCCA+GGG | - | chr8.1:16987612-16987631 | MS.gene066091:CDS | 45.0% |
| !! | CGGTTTGGTTTGCTTCTTTG+AGG | - | chr8.1:16987045-16987064 | MS.gene066091:intron | 45.0% |
| !! | TTTGAAAAGGTGCTTCAGCC+GGG | - | chr8.1:16985887-16985906 | MS.gene066091:CDS | 45.0% |
| ATACCGTGCCTTGGCAAACA+AGG | - | chr8.1:16986335-16986354 | MS.gene066091:intron | 50.0% | |
| CAACGTCAAGCCATTGTGGA+TGG | - | chr8.1:16987408-16987427 | MS.gene066091:intron | 50.0% | |
| CAAGGAACCATGGCATGCAA+TGG | + | chr8.1:16985916-16985935 | None:intergenic | 50.0% | |
| CATTGCATGCCATGGTTCCT+TGG | - | chr8.1:16985914-16985933 | MS.gene066091:CDS | 50.0% | |
| CTTGCAAATAAAGCGAGCCG+AGG | - | chr8.1:16987341-16987360 | MS.gene066091:intron | 50.0% | |
| GAACACAGCAGAAGACTTGG+AGG | + | chr8.1:16987550-16987569 | None:intergenic | 50.0% | |
| GAGGATCGCAGCTAATGAGA+AGG | - | chr8.1:16987302-16987321 | MS.gene066091:intron | 50.0% | |
| GTGTTCATTCCACATGGACC+TGG | - | chr8.1:16987564-16987583 | MS.gene066091:CDS | 50.0% | |
| TCGTCAACGTCAAGCCATTG+TGG | - | chr8.1:16987404-16987423 | MS.gene066091:intron | 50.0% | |
| TGCTGGTCATCTCTCTCTTC+GGG | - | chr8.1:16985946-16985965 | MS.gene066091:CDS | 50.0% | |
| TTTAGACTCAGCCTCACCCT+CGG | + | chr8.1:16987361-16987380 | None:intergenic | 50.0% | |
| !! | TTGCCTTGTTTGCCAAGGCA+CGG | + | chr8.1:16986341-16986360 | None:intergenic | 50.0% |
| AATAAAGCGAGCCGAGGGTG+AGG | - | chr8.1:16987347-16987366 | MS.gene066091:intron | 55.0% | |
| CATGGCATGCAATGGCATCC+CGG | + | chr8.1:16985908-16985927 | None:intergenic | 55.0% | |
| CGAACAGCACCAGGTCCATG+TGG | + | chr8.1:16987576-16987595 | None:intergenic | 60.0% | |
| CGGGATGCCATTGCATGCCA+TGG | - | chr8.1:16985906-16985925 | MS.gene066091:CDS | 60.0% | |
| GCAACATCGCGAACAGCACC+AGG | + | chr8.1:16987585-16987604 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 16985818 | 16987653 | 16985818 | ID=MS.gene066091 |
| chr8.1 | mRNA | 16985818 | 16987653 | 16985818 | ID=MS.gene066091.t1;Parent=MS.gene066091 |
| chr8.1 | exon | 16987465 | 16987653 | 16987465 | ID=MS.gene066091.t1.exon1;Parent=MS.gene066091.t1 |
| chr8.1 | CDS | 16987465 | 16987653 | 16987465 | ID=cds.MS.gene066091.t1;Parent=MS.gene066091.t1 |
| chr8.1 | exon | 16987051 | 16987171 | 16987051 | ID=MS.gene066091.t1.exon2;Parent=MS.gene066091.t1 |
| chr8.1 | CDS | 16987051 | 16987171 | 16987051 | ID=cds.MS.gene066091.t1;Parent=MS.gene066091.t1 |
| chr8.1 | exon | 16986868 | 16986959 | 16986868 | ID=MS.gene066091.t1.exon3;Parent=MS.gene066091.t1 |
| chr8.1 | CDS | 16986868 | 16986959 | 16986868 | ID=cds.MS.gene066091.t1;Parent=MS.gene066091.t1 |
| chr8.1 | exon | 16986696 | 16986792 | 16986696 | ID=MS.gene066091.t1.exon4;Parent=MS.gene066091.t1 |
| chr8.1 | CDS | 16986696 | 16986792 | 16986696 | ID=cds.MS.gene066091.t1;Parent=MS.gene066091.t1 |
| chr8.1 | exon | 16985818 | 16986179 | 16985818 | ID=MS.gene066091.t1.exon5;Parent=MS.gene066091.t1 |
| chr8.1 | CDS | 16985818 | 16986179 | 16985818 | ID=cds.MS.gene066091.t1;Parent=MS.gene066091.t1 |
| Gene Sequence |
| Protein sequence |
