Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066097.t1 | XP_003608997.2 | 95.8 | 286 | 12 | 0 | 1 | 286 | 1 | 286 | 6.50E-150 | 540 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066097.t1 | Q5GI04 | 87.4 | 285 | 36 | 0 | 1 | 285 | 1 | 285 | 8.0e-141 | 501.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066097.t1 | G7JPW8 | 95.8 | 286 | 12 | 0 | 1 | 286 | 1 | 286 | 4.7e-150 | 540.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene31416 | MS.gene066097 | PPI |
| MS.gene68929 | MS.gene066097 | PPI |
| MS.gene066097 | MS.gene055768 | PPI |
| MS.gene20481 | MS.gene066097 | PPI |
| MS.gene043467 | MS.gene066097 | PPI |
| MS.gene066097 | MS.gene59292 | PPI |
| MS.gene066097 | MS.gene029948 | PPI |
| MS.gene066097 | MS.gene030984 | PPI |
| MS.gene066097 | MS.gene028857 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066097.t1 | MTR_4g107830 | 92.256 | 297 | 8 | 1 | 1 | 282 | 1 | 297 | 0.0 | 557 |
| MS.gene066097.t1 | MTR_4g107810 | 95.804 | 286 | 12 | 0 | 1 | 286 | 1 | 286 | 0.0 | 553 |
| MS.gene066097.t1 | MTR_4g107760 | 95.804 | 286 | 12 | 0 | 1 | 286 | 1 | 286 | 0.0 | 553 |
| MS.gene066097.t1 | MTR_4g107810 | 95.804 | 286 | 12 | 0 | 1 | 286 | 61 | 346 | 0.0 | 552 |
| MS.gene066097.t1 | MTR_4g107720 | 94.326 | 282 | 16 | 0 | 1 | 282 | 1 | 282 | 0.0 | 536 |
| MS.gene066097.t1 | MTR_6g011380 | 83.688 | 282 | 46 | 0 | 1 | 282 | 1 | 282 | 7.37e-180 | 497 |
| MS.gene066097.t1 | MTR_8g469160 | 79.859 | 283 | 57 | 0 | 1 | 283 | 1 | 283 | 2.90e-177 | 490 |
| MS.gene066097.t1 | MTR_4g107730 | 87.153 | 288 | 29 | 3 | 1 | 286 | 1 | 282 | 3.22e-177 | 490 |
| MS.gene066097.t1 | MTR_6g460470 | 56.690 | 284 | 121 | 1 | 1 | 282 | 1 | 284 | 8.19e-117 | 337 |
| MS.gene066097.t1 | MTR_4g107700 | 96.296 | 81 | 3 | 0 | 202 | 282 | 6 | 86 | 1.26e-49 | 159 |
| MS.gene066097.t1 | MTR_3g093220 | 30.055 | 183 | 122 | 4 | 19 | 199 | 71 | 249 | 2.62e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066097.t1 | AT5G62740 | 89.362 | 282 | 30 | 0 | 1 | 282 | 1 | 282 | 0.0 | 530 |
| MS.gene066097.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene066097.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene066097.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene066097.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene066097.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene066097.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene066097.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene066097.t1 | AT3G01290 | 78.723 | 282 | 60 | 0 | 1 | 282 | 1 | 282 | 5.75e-170 | 472 |
| MS.gene066097.t1 | AT5G51570 | 57.042 | 284 | 120 | 1 | 1 | 282 | 1 | 284 | 7.71e-122 | 350 |
Find 63 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACACTATGAAAGAAAT+TGG | 0.142368 | 8.4:+19353877 | MS.gene066097:CDS |
| ATGTTCTCATTGCAGTAATT+AGG | 0.205184 | 8.4:+19352856 | MS.gene066097:intron |
| GCCTTCTTCACATGCTTATC+TGG | 0.244299 | 8.4:-19353092 | None:intergenic |
| GGAGAAGTCCATCACGAATT+TGG | 0.279174 | 8.4:-19353966 | None:intergenic |
| GTATCATCCAAGTTGAGTTT+TGG | 0.298817 | 8.4:-19352888 | None:intergenic |
| CTCTCTTCGGGTTCAACAAT+TGG | 0.301031 | 8.4:+19352317 | MS.gene066097:CDS |
| TGTTCTCATTGCAGTAATTA+GGG | 0.306159 | 8.4:+19352857 | MS.gene066097:intron |
| TGCTGGTCATCTCTCTCTTC+GGG | 0.329796 | 8.4:+19352305 | MS.gene066097:CDS |
| TTGACACTATGAAAGAAATT+GGG | 0.344707 | 8.4:+19353878 | MS.gene066097:CDS |
| CAACAGGCTATGTCAGCTTA+TGG | 0.345528 | 8.4:+19353032 | MS.gene066097:intron |
| TTGCTGGTCATCTCTCTCTT+CGG | 0.350694 | 8.4:+19352304 | MS.gene066097:CDS |
| GTGGCTATGAAAGAAGGTTT+TGG | 0.357672 | 8.4:+19352219 | MS.gene066097:CDS |
| TTCCTTGGAAAACGAATTGC+TGG | 0.386474 | 8.4:+19352288 | MS.gene066097:CDS |
| GGATTGAGAGACAGTGTGAT+TGG | 0.394088 | 8.4:+19353787 | MS.gene066097:CDS |
| GCCAGATAAGCATGTGAAGA+AGG | 0.431501 | 8.4:+19353091 | MS.gene066097:CDS |
| AATTCGTGATGGACTTCTCC+AGG | 0.436039 | 8.4:+19353969 | MS.gene066097:CDS |
| TGCAAAAGATGTCATGGATA+TGG | 0.437735 | 8.4:+19353837 | MS.gene066097:CDS |
| ATTTGAAAAGGTGCTTCAGC+CGG | 0.463345 | 8.4:+19352245 | MS.gene066097:CDS |
| CATTGCATGCCATGGTTCCT+TGG | 0.471591 | 8.4:+19352273 | MS.gene066097:CDS |
| GTCTAAATATCTCGCTGGGA+TGG | 0.480437 | 8.4:+19353732 | MS.gene066097:CDS |
| TTCTATTCAATACCGTGCCT+TGG | 0.481733 | 8.4:+19352685 | MS.gene066097:CDS |
| ATCGTTTGCCTTGTTTGCCA+AGG | 0.508315 | 8.4:-19352702 | None:intergenic |
| TAACAAACCAACCTTTGTCT+TGG | 0.511154 | 8.4:-19352355 | None:intergenic |
| TCTCAAGTGGCTATGAAAGA+AGG | 0.511380 | 8.4:+19352213 | MS.gene066097:CDS |
| TTTGAAAAGGTGCTTCAGCC+GGG | 0.514758 | 8.4:+19352246 | MS.gene066097:CDS |
| CATGGCATGCAATGGCATCC+CGG | 0.521469 | 8.4:-19352264 | None:intergenic |
| AATGAACACAGCAGAAGACT+TGG | 0.521852 | 8.4:-19353908 | None:intergenic |
| TCTAAATATCTCGCTGGGAT+GGG | 0.525100 | 8.4:+19353733 | MS.gene066097:CDS |
| TTGCCTTGTTTGCCAAGGCA+CGG | 0.526106 | 8.4:-19352697 | None:intergenic |
| GTGTTCATTCCACATGGACC+TGG | 0.527747 | 8.4:+19353922 | MS.gene066097:CDS |
| CAACGTCAAGCCATTGTGGA+TGG | 0.529578 | 8.4:+19353766 | MS.gene066097:CDS |
| CGGGATGCCATTGCATGCCA+TGG | 0.534181 | 8.4:+19352265 | MS.gene066097:CDS |
| AATAAAGCGAGCCGAGGGTG+AGG | 0.551044 | 8.4:+19353705 | MS.gene066097:CDS |
| GCTGAGTCTAAATATCTCGC+TGG | 0.552574 | 8.4:+19353727 | MS.gene066097:CDS |
| GACAAGTGCAAAAGATGTCA+TGG | 0.553387 | 8.4:+19353831 | MS.gene066097:CDS |
| CAGTGTTCCAAAACTCAACT+TGG | 0.553554 | 8.4:+19352881 | MS.gene066097:CDS |
| TATGATTAGCTGCAAGAATG+AGG | 0.556005 | 8.4:+19353641 | MS.gene066097:intron |
| GCAACATCGCGAACAGCACC+AGG | 0.556632 | 8.4:-19353940 | None:intergenic |
| GCTATGAATGAAATCAATGC+TGG | 0.558940 | 8.4:+19353113 | MS.gene066097:CDS |
| TCTGCTGTGTTCATTCCACA+TGG | 0.564187 | 8.4:+19353916 | MS.gene066097:CDS |
| ATACCGTGCCTTGGCAAACA+AGG | 0.570829 | 8.4:+19352694 | MS.gene066097:CDS |
| GAACACAGCAGAAGACTTGG+AGG | 0.574169 | 8.4:-19353905 | None:intergenic |
| TGACACTATGAAAGAAATTG+GGG | 0.579718 | 8.4:+19353879 | MS.gene066097:CDS |
| CTGAGTCTAAATATCTCGCT+GGG | 0.580679 | 8.4:+19353728 | MS.gene066097:CDS |
| CAAGGAACCATGGCATGCAA+TGG | 0.581813 | 8.4:-19352272 | None:intergenic |
| TTTAGACTCAGCCTCACCCT+CGG | 0.596378 | 8.4:-19353716 | None:intergenic |
| AAATGAAATTGCAAAAGCTG+TGG | 0.603554 | 8.4:+19352923 | MS.gene066097:CDS |
| TGTGGAAGAAGAACTTGAGA+AGG | 0.603618 | 8.4:+19352941 | MS.gene066097:CDS |
| ACTCATGAGTTAGAGAACCC+TGG | 0.616759 | 8.4:-19353987 | None:intergenic |
| GCAAGTTGATCAATCTCAAG+TGG | 0.619072 | 8.4:+19352200 | MS.gene066097:CDS |
| GTTGCTAGCCAAATTCGTGA+TGG | 0.622218 | 8.4:+19353958 | MS.gene066097:CDS |
| TACAAACTTAGCAACACAAG+GGG | 0.623209 | 8.4:+19352731 | MS.gene066097:CDS |
| TTTACAAACTTAGCAACACA+AGG | 0.632164 | 8.4:+19352729 | MS.gene066097:CDS |
| GAGGATCGCAGCTAATGAGA+AGG | 0.632818 | 8.4:+19353660 | MS.gene066097:CDS |
| ATTCGTGATGGACTTCTCCA+GGG | 0.634995 | 8.4:+19353970 | MS.gene066097:CDS |
| CTTGCAAATAAAGCGAGCCG+AGG | 0.639259 | 8.4:+19353699 | MS.gene066097:CDS |
| TCGTCAACGTCAAGCCATTG+TGG | 0.640251 | 8.4:+19353762 | MS.gene066097:CDS |
| CAAATGTGAGACCAAGACAA+AGG | 0.650717 | 8.4:+19352344 | MS.gene066097:CDS |
| TTGCAAATAAAGCGAGCCGA+GGG | 0.652348 | 8.4:+19353700 | MS.gene066097:CDS |
| GTCTCTCAATCCATCCACAA+TGG | 0.662038 | 8.4:-19353776 | None:intergenic |
| CGAACAGCACCAGGTCCATG+TGG | 0.675254 | 8.4:-19353931 | None:intergenic |
| TTACAAACTTAGCAACACAA+GGG | 0.685367 | 8.4:+19352730 | MS.gene066097:CDS |
| TGTCAAAGTATTGAGTGACA+AGG | 0.713018 | 8.4:-19353861 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATAATAACAATATTGT+GGG | - | chr8.4:19353165-19353184 | None:intergenic | 10.0% |
| !! | AATAAAAATTAAAATTATCC+CGG | - | chr8.4:19352456-19352475 | None:intergenic | 10.0% |
| !! | TAAATATAATAACAATATTG+TGG | - | chr8.4:19353166-19353185 | None:intergenic | 10.0% |
| !! | TTATTTATATGAATTAAACT+TGG | + | chr8.4:19353183-19353202 | MS.gene066097:intron | 10.0% |
| !!! | GGATAATTTTAATTTTTATT+AGG | + | chr8.4:19352456-19352475 | MS.gene066097:intron | 10.0% |
| !! | AATATAATAACAATATTGTG+GGG | - | chr8.4:19353164-19353183 | None:intergenic | 15.0% |
| !! | TTTAATATTTATTTGCTTGT+AGG | + | chr8.4:19352637-19352656 | MS.gene066097:intron | 15.0% |
| !!! | TTTATTTTATTCTCTAAAAG+AGG | + | chr8.4:19353228-19353247 | MS.gene066097:intron | 15.0% |
| !! | AAAAATTTGAGAACAATGTA+CGG | - | chr8.4:19352595-19352614 | None:intergenic | 20.0% |
| !! | ACAATTAGTATTTACAGATA+AGG | + | chr8.4:19352976-19352995 | MS.gene066097:intron | 20.0% |
| !! | ATGTAACAAAAAACTATGTA+GGG | + | chr8.4:19353300-19353319 | MS.gene066097:intron | 20.0% |
| !! | CCATAGTTAAGAAAATATAT+AGG | - | chr8.4:19352511-19352530 | None:intergenic | 20.0% |
| !!! | ATTTATTTTGGAATTAACTC+CGG | + | chr8.4:19353383-19353402 | MS.gene066097:intron | 20.0% |
| !!! | CCTATATATTTTCTTAACTA+TGG | + | chr8.4:19352508-19352527 | MS.gene066097:intron | 20.0% |
| !!! | TTTTGCTGCAAAATTTATTT+TGG | + | chr8.4:19353371-19353390 | MS.gene066097:intron | 20.0% |
| ! | AATCAAAATAACATAGCACA+AGG | - | chr8.4:19352488-19352507 | None:intergenic | 25.0% |
| ! | CATGTAACAAAAAACTATGT+AGG | + | chr8.4:19353299-19353318 | MS.gene066097:intron | 25.0% |
| ! | GGAAACAGTATATGAAAATA+TGG | - | chr8.4:19353617-19353636 | None:intergenic | 25.0% |
| ! | TTGACACTATGAAAGAAATT+GGG | + | chr8.4:19353878-19353897 | MS.gene066097:CDS | 25.0% |
| ! | TTTGACACTATGAAAGAAAT+TGG | + | chr8.4:19353877-19353896 | MS.gene066097:CDS | 25.0% |
| !! | ATTGTTCTCAAATTTTTCCA+TGG | + | chr8.4:19352598-19352617 | MS.gene066097:intron | 25.0% |
| !! | TTGTTCTCAAATTTTTCCAT+GGG | + | chr8.4:19352599-19352618 | MS.gene066097:intron | 25.0% |
| !!! | AGGTTTTGGAAAATTTGAAA+AGG | + | chr8.4:19352233-19352252 | MS.gene066097:CDS | 25.0% |
| !!! | ATTCAAGCTTATGTTTTTGA+TGG | + | chr8.4:19352758-19352777 | MS.gene066097:CDS | 25.0% |
| AAATGAAATTGCAAAAGCTG+TGG | + | chr8.4:19352923-19352942 | MS.gene066097:CDS | 30.0% | |
| ACAAATCAACATTTATCCCA+TGG | - | chr8.4:19352618-19352637 | None:intergenic | 30.0% | |
| AGCAATAAACATGCAATTAC+TGG | + | chr8.4:19352801-19352820 | MS.gene066097:intron | 30.0% | |
| ATCATAGCATAACCAACTAT+TGG | - | chr8.4:19353430-19353449 | None:intergenic | 30.0% | |
| ATGTTCTCATTGCAGTAATT+AGG | + | chr8.4:19352856-19352875 | MS.gene066097:intron | 30.0% | |
| CAAAAACATAAGCTTGAATC+TGG | - | chr8.4:19352757-19352776 | None:intergenic | 30.0% | |
| TAGTTGGTTATGCTATGATA+TGG | + | chr8.4:19353431-19353450 | MS.gene066097:intron | 30.0% | |
| TGACACTATGAAAGAAATTG+GGG | + | chr8.4:19353879-19353898 | MS.gene066097:CDS | 30.0% | |
| TGTTCTCATTGCAGTAATTA+GGG | + | chr8.4:19352857-19352876 | MS.gene066097:intron | 30.0% | |
| TTACAAACTTAGCAACACAA+GGG | + | chr8.4:19352730-19352749 | MS.gene066097:CDS | 30.0% | |
| TTTACAAACTTAGCAACACA+AGG | + | chr8.4:19352729-19352748 | MS.gene066097:CDS | 30.0% | |
| TTTGTTACATGTAAGACGTA+CGG | - | chr8.4:19353290-19353309 | None:intergenic | 30.0% | |
| ! | AATTTTGCAGCAAAAGACTT+AGG | - | chr8.4:19353366-19353385 | None:intergenic | 30.0% |
| ATATGGTAATCCAAGAGCAA+AGG | - | chr8.4:19353600-19353619 | None:intergenic | 35.0% | |
| ATCCATGTGATTGATAAGCA+TGG | - | chr8.4:19352420-19352439 | None:intergenic | 35.0% | |
| CCAAATATATCCTTTGCTCT+TGG | + | chr8.4:19353587-19353606 | MS.gene066097:intron | 35.0% | |
| CCAAGAGCAAAGGATATATT+TGG | - | chr8.4:19353590-19353609 | None:intergenic | 35.0% | |
| GCTATGAATGAAATCAATGC+TGG | + | chr8.4:19353113-19353132 | MS.gene066097:CDS | 35.0% | |
| TAACAAACCAACCTTTGTCT+TGG | - | chr8.4:19352358-19352377 | None:intergenic | 35.0% | |
| TAACTTTGAATCGTCTCAAC+AGG | + | chr8.4:19353016-19353035 | MS.gene066097:intron | 35.0% | |
| TACAAACTTAGCAACACAAG+GGG | + | chr8.4:19352731-19352750 | MS.gene066097:CDS | 35.0% | |
| TATATTTGGCACATAGCACT+CGG | - | chr8.4:19353576-19353595 | None:intergenic | 35.0% | |
| TCACATGGATACTTTCTCTT+TGG | + | chr8.4:19352430-19352449 | MS.gene066097:intron | 35.0% | |
| TGCAAAAGATGTCATGGATA+TGG | + | chr8.4:19353837-19353856 | MS.gene066097:CDS | 35.0% | |
| TGCATGTTTATTGCTAAGCA+GGG | - | chr8.4:19352796-19352815 | None:intergenic | 35.0% | |
| TGTGATTGATAAGCATGGAA+TGG | - | chr8.4:19352415-19352434 | None:intergenic | 35.0% | |
| TTCCATGCTTATCAATCACA+TGG | + | chr8.4:19352415-19352434 | MS.gene066097:intron | 35.0% | |
| TTGCATGTTTATTGCTAAGC+AGG | - | chr8.4:19352797-19352816 | None:intergenic | 35.0% | |
| TTTACAGATAAGGTGAACTG+AGG | + | chr8.4:19352986-19353005 | MS.gene066097:intron | 35.0% | |
| ! | GATTTTCAGAGAATGTACCA+GGG | + | chr8.4:19353809-19353828 | MS.gene066097:CDS | 35.0% |
| ! | TATGATTAGCTGCAAGAATG+AGG | + | chr8.4:19353641-19353660 | MS.gene066097:intron | 35.0% |
| !! | GTATCATCCAAGTTGAGTTT+TGG | - | chr8.4:19352891-19352910 | None:intergenic | 35.0% |
| !! | TATACACAGAGTACTGAAAG+TGG | - | chr8.4:19352556-19352575 | None:intergenic | 35.0% |
| !! | TGTCAAAGTATTGAGTGACA+AGG | - | chr8.4:19353864-19353883 | None:intergenic | 35.0% |
| !!! | TTTTGGAATTAACTCCGGTT+TGG | + | chr8.4:19353388-19353407 | MS.gene066097:intron | 35.0% |
| AAGACGTACGGTAAGGAAAA+AGG | - | chr8.4:19353278-19353297 | None:intergenic | 40.0% | |
| AAGACTTAGGATCAGATGCT+TGG | - | chr8.4:19353353-19353372 | None:intergenic | 40.0% | |
| AATATTGTGGGGACATCTCA+TGG | - | chr8.4:19353153-19353172 | None:intergenic | 40.0% | |
| AATGAACACAGCAGAAGACT+TGG | - | chr8.4:19353911-19353930 | None:intergenic | 40.0% | |
| ATGGATACTTTCTCTTTGGC+CGG | + | chr8.4:19352434-19352453 | MS.gene066097:intron | 40.0% | |
| CAAATGTGAGACCAAGACAA+AGG | + | chr8.4:19352344-19352363 | MS.gene066097:CDS | 40.0% | |
| CAGTGTTCCAAAACTCAACT+TGG | + | chr8.4:19352881-19352900 | MS.gene066097:CDS | 40.0% | |
| CATGGAATGGCATGAAGATT+TGG | - | chr8.4:19352402-19352421 | None:intergenic | 40.0% | |
| CTCAAAGAAGCAAACCAAAC+CGG | - | chr8.4:19353405-19353424 | None:intergenic | 40.0% | |
| CTGAGTCTAAATATCTCGCT+GGG | + | chr8.4:19353728-19353747 | MS.gene066097:CDS | 40.0% | |
| GACAAGTGCAAAAGATGTCA+TGG | + | chr8.4:19353831-19353850 | MS.gene066097:CDS | 40.0% | |
| TACATGTAAGACGTACGGTA+AGG | - | chr8.4:19353285-19353304 | None:intergenic | 40.0% | |
| TCTAAATATCTCGCTGGGAT+GGG | + | chr8.4:19353733-19353752 | MS.gene066097:CDS | 40.0% | |
| TCTCAAGTGGCTATGAAAGA+AGG | + | chr8.4:19352213-19352232 | MS.gene066097:CDS | 40.0% | |
| TCTTGCAGCTAATCATAGAC+AGG | - | chr8.4:19353638-19353657 | None:intergenic | 40.0% | |
| TGTGGAAGAAGAACTTGAGA+AGG | + | chr8.4:19352941-19352960 | MS.gene066097:CDS | 40.0% | |
| TTCCTTGGAAAACGAATTGC+TGG | + | chr8.4:19352288-19352307 | MS.gene066097:CDS | 40.0% | |
| TTCTATTCAATACCGTGCCT+TGG | + | chr8.4:19352685-19352704 | MS.gene066097:CDS | 40.0% | |
| ! | ATTCGTTTTCCAAGGAACCA+TGG | - | chr8.4:19352285-19352304 | None:intergenic | 40.0% |
| ! | GGATTTTCAGAGAATGTACC+AGG | + | chr8.4:19353808-19353827 | MS.gene066097:CDS | 40.0% |
| ! | GTGGCTATGAAAGAAGGTTT+TGG | + | chr8.4:19352219-19352238 | MS.gene066097:CDS | 40.0% |
| !! | ATTTGAAAAGGTGCTTCAGC+CGG | + | chr8.4:19352245-19352264 | MS.gene066097:CDS | 40.0% |
| !! | CTTCTTTGAGGTCCAATAGT+TGG | + | chr8.4:19353415-19353434 | MS.gene066097:intron | 40.0% |
| !! | GCAAGTTGATCAATCTCAAG+TGG | + | chr8.4:19352200-19352219 | MS.gene066097:CDS | 40.0% |
| !!! | CAAGTTGAGTTTTGGAACAC+TGG | - | chr8.4:19352883-19352902 | None:intergenic | 40.0% |
| ACTCATGAGTTAGAGAACCC+TGG | - | chr8.4:19353990-19354009 | None:intergenic | 45.0% | |
| CAACAGGCTATGTCAGCTTA+TGG | + | chr8.4:19353032-19353051 | MS.gene066097:intron | 45.0% | |
| CGTACGGTAAGGAAAAAGGT+AGG | - | chr8.4:19353274-19353293 | None:intergenic | 45.0% | |
| GCCAGATAAGCATGTGAAGA+AGG | + | chr8.4:19353091-19353110 | MS.gene066097:CDS | 45.0% | |
| GCCTTCTTCACATGCTTATC+TGG | - | chr8.4:19353095-19353114 | None:intergenic | 45.0% | |
| GCTGAGTCTAAATATCTCGC+TGG | + | chr8.4:19353727-19353746 | MS.gene066097:CDS | 45.0% | |
| GGAGAAGTCCATCACGAATT+TGG | - | chr8.4:19353969-19353988 | None:intergenic | 45.0% | |
| GGATTGAGAGACAGTGTGAT+TGG | + | chr8.4:19353787-19353806 | MS.gene066097:CDS | 45.0% | |
| GTCTAAATATCTCGCTGGGA+TGG | + | chr8.4:19353732-19353751 | MS.gene066097:CDS | 45.0% | |
| GTCTCTCAATCCATCCACAA+TGG | - | chr8.4:19353779-19353798 | None:intergenic | 45.0% | |
| GTTGCTAGCCAAATTCGTGA+TGG | + | chr8.4:19353958-19353977 | MS.gene066097:CDS | 45.0% | |
| TCTGCTGTGTTCATTCCACA+TGG | + | chr8.4:19353916-19353935 | MS.gene066097:CDS | 45.0% | |
| TGGATACTTTCTCTTTGGCC+GGG | + | chr8.4:19352435-19352454 | MS.gene066097:intron | 45.0% | |
| TGTGAGACCAAGACAAAGGT+TGG | + | chr8.4:19352348-19352367 | MS.gene066097:intron | 45.0% | |
| TTGCAAATAAAGCGAGCCGA+GGG | + | chr8.4:19353700-19353719 | MS.gene066097:CDS | 45.0% | |
| TTGCTGGTCATCTCTCTCTT+CGG | + | chr8.4:19352304-19352323 | MS.gene066097:CDS | 45.0% | |
| ! | ACATCTTTTGCACTTGTCCC+TGG | - | chr8.4:19353829-19353848 | None:intergenic | 45.0% |
| ! | CTCTCTTCGGGTTCAACAAT+TGG | + | chr8.4:19352317-19352336 | MS.gene066097:CDS | 45.0% |
| ! | GACCAGCAATTCGTTTTCCA+AGG | - | chr8.4:19352293-19352312 | None:intergenic | 45.0% |
| !! | AATTCGTGATGGACTTCTCC+AGG | + | chr8.4:19353969-19353988 | MS.gene066097:CDS | 45.0% |
| !! | ATCGTTTGCCTTGTTTGCCA+AGG | - | chr8.4:19352705-19352724 | None:intergenic | 45.0% |
| !! | ATTCGTGATGGACTTCTCCA+GGG | + | chr8.4:19353970-19353989 | MS.gene066097:CDS | 45.0% |
| !! | CGGTTTGGTTTGCTTCTTTG+AGG | + | chr8.4:19353403-19353422 | MS.gene066097:intron | 45.0% |
| !! | TTTGAAAAGGTGCTTCAGCC+GGG | + | chr8.4:19352246-19352265 | MS.gene066097:CDS | 45.0% |
| ATACCGTGCCTTGGCAAACA+AGG | + | chr8.4:19352694-19352713 | MS.gene066097:CDS | 50.0% | |
| CAACGTCAAGCCATTGTGGA+TGG | + | chr8.4:19353766-19353785 | MS.gene066097:CDS | 50.0% | |
| CAAGGAACCATGGCATGCAA+TGG | - | chr8.4:19352275-19352294 | None:intergenic | 50.0% | |
| CATTGCATGCCATGGTTCCT+TGG | + | chr8.4:19352273-19352292 | MS.gene066097:CDS | 50.0% | |
| CTTGCAAATAAAGCGAGCCG+AGG | + | chr8.4:19353699-19353718 | MS.gene066097:CDS | 50.0% | |
| GAACACAGCAGAAGACTTGG+AGG | - | chr8.4:19353908-19353927 | None:intergenic | 50.0% | |
| GAGGATCGCAGCTAATGAGA+AGG | + | chr8.4:19353660-19353679 | MS.gene066097:CDS | 50.0% | |
| GTGTTCATTCCACATGGACC+TGG | + | chr8.4:19353922-19353941 | MS.gene066097:CDS | 50.0% | |
| TCGTCAACGTCAAGCCATTG+TGG | + | chr8.4:19353762-19353781 | MS.gene066097:CDS | 50.0% | |
| TGCTGGTCATCTCTCTCTTC+GGG | + | chr8.4:19352305-19352324 | MS.gene066097:CDS | 50.0% | |
| TTTAGACTCAGCCTCACCCT+CGG | - | chr8.4:19353719-19353738 | None:intergenic | 50.0% | |
| !! | TTGCCTTGTTTGCCAAGGCA+CGG | - | chr8.4:19352700-19352719 | None:intergenic | 50.0% |
| AATAAAGCGAGCCGAGGGTG+AGG | + | chr8.4:19353705-19353724 | MS.gene066097:CDS | 55.0% | |
| CATGGCATGCAATGGCATCC+CGG | - | chr8.4:19352267-19352286 | None:intergenic | 55.0% | |
| CGAACAGCACCAGGTCCATG+TGG | - | chr8.4:19353934-19353953 | None:intergenic | 60.0% | |
| CGGGATGCCATTGCATGCCA+TGG | + | chr8.4:19352265-19352284 | MS.gene066097:CDS | 60.0% | |
| GCAACATCGCGAACAGCACC+AGG | - | chr8.4:19353943-19353962 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 19352177 | 19354011 | 19352177 | ID=MS.gene066097 |
| chr8.4 | mRNA | 19352177 | 19354011 | 19352177 | ID=MS.gene066097.t1;Parent=MS.gene066097 |
| chr8.4 | exon | 19352177 | 19352365 | 19352177 | ID=MS.gene066097.t1.exon1;Parent=MS.gene066097.t1 |
| chr8.4 | CDS | 19352177 | 19352365 | 19352177 | ID=cds.MS.gene066097.t1;Parent=MS.gene066097.t1 |
| chr8.4 | exon | 19352659 | 19352779 | 19352659 | ID=MS.gene066097.t1.exon2;Parent=MS.gene066097.t1 |
| chr8.4 | CDS | 19352659 | 19352779 | 19352659 | ID=cds.MS.gene066097.t1;Parent=MS.gene066097.t1 |
| chr8.4 | exon | 19352871 | 19352962 | 19352871 | ID=MS.gene066097.t1.exon3;Parent=MS.gene066097.t1 |
| chr8.4 | CDS | 19352871 | 19352962 | 19352871 | ID=cds.MS.gene066097.t1;Parent=MS.gene066097.t1 |
| chr8.4 | exon | 19353038 | 19353134 | 19353038 | ID=MS.gene066097.t1.exon4;Parent=MS.gene066097.t1 |
| chr8.4 | CDS | 19353038 | 19353134 | 19353038 | ID=cds.MS.gene066097.t1;Parent=MS.gene066097.t1 |
| chr8.4 | exon | 19353650 | 19354011 | 19353650 | ID=MS.gene066097.t1.exon5;Parent=MS.gene066097.t1 |
| chr8.4 | CDS | 19353650 | 19354011 | 19353650 | ID=cds.MS.gene066097.t1;Parent=MS.gene066097.t1 |
| Gene Sequence |
| Protein sequence |
