AlfalfaGEDB | MS.gene066616

M. sativa cultivar XinJiangDaYe / MS.gene066616

KEGG: K03686
GO: GO:0003674 GO:0005488 GO:0005515 GO:0006457 GO:0008150 GO:0009987 GO:0031072 GO:0051082
PFAM: PF00684.22 PF01556.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066616.t1	RHN59209.1	95.2	126	6	0	34	159	39	164	1.80E-64	255.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066616.t1	Q8GWW8	55.2	163	71	2	41	203	227	387	6.8e-44	178.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066616.t1	A0A396I0V1	95.2	126	6	0	34	159	39	164	1.3e-64	255.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052190	MS.gene066616	0.832349	9.95E-56	-1.69E-46
MS.gene052333	MS.gene066616	0.818958	1.49E-52	-1.69E-46
MS.gene053166	MS.gene066616	0.824104	9.67E-54	-1.69E-46
MS.gene05415	MS.gene066616	0.820215	7.72E-53	-1.69E-46
MS.gene054236	MS.gene066616	0.803282	3.76E-49	-1.69E-46
MS.gene054291	MS.gene066616	-0.817457	3.27E-52	-1.69E-46
MS.gene054467	MS.gene066616	0.805803	1.12E-49	-1.69E-46
MS.gene054468	MS.gene066616	0.807371	5.22E-50	-1.69E-46
MS.gene054559	MS.gene066616	0.815391	9.47E-52	-1.69E-46
MS.gene055227	MS.gene066616	0.808279	3.35E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066616.t1	MTR_4g023490	67.290	214	46	4	1	203	108	308	7.84e-86	259
MS.gene066616.t1	MTR_4g023470	63.590	195	59	4	9	203	190	372	2.71e-72	226
MS.gene066616.t1	MTR_3g027580	56.995	193	71	4	11	203	193	373	6.78e-64	204
MS.gene066616.t1	MTR_5g065160	42.466	146	79	2	58	203	223	363	4.67e-29	113
MS.gene066616.t1	MTR_5g065160	42.466	146	79	2	58	203	230	370	5.01e-29	113
MS.gene066616.t1	MTR_5g065160	42.466	146	79	2	58	203	229	369	5.24e-29	112
MS.gene066616.t1	MTR_5g065160	42.466	146	79	2	58	203	230	370	5.51e-29	112
MS.gene066616.t1	MTR_3g087030	34.503	171	102	4	27	193	200	364	2.34e-21	91.3
MS.gene066616.t1	MTR_2g104030	34.641	153	93	4	44	191	209	359	7.13e-19	84.7
MS.gene066616.t1	MTR_6g471050	30.286	175	113	4	23	193	101	270	6.27e-17	79.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066616.t1	AT5G48030	50.777	193	83	4	11	203	207	387	3.38e-53	177
MS.gene066616.t1	AT1G28210	34.868	152	94	2	44	195	178	324	4.16e-24	99.0
MS.gene066616.t1	AT1G28210	34.868	152	94	2	44	195	178	324	4.46e-24	98.6
MS.gene066616.t1	AT1G28210	34.868	152	94	2	44	195	178	324	5.47e-24	98.6
MS.gene066616.t1	AT2G22360	35.359	181	106	6	27	203	203	376	4.09e-23	96.3
MS.gene066616.t1	AT4G39960	35.912	181	105	6	27	203	209	382	5.76e-22	93.2
MS.gene066616.t1	AT4G39960	35.912	181	105	6	27	203	209	382	5.76e-22	93.2
MS.gene066616.t1	AT1G80030	35.948	153	91	4	44	191	214	364	8.78e-19	84.3
MS.gene066616.t1	AT1G80030	35.948	153	91	4	44	191	214	364	8.78e-19	84.3
MS.gene066616.t1	AT1G80030	35.948	153	91	4	44	191	214	364	8.78e-19	84.3

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Find 58 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGTAAGCGATGTAAA+GGG	0.536037	4.2:-79411436	MS.gene066616:CDS
AAGGGTAGGAAAGTTGTCAA+AGG	0.647884	4.2:-79410929	MS.gene066616:CDS
AATGAGACCCTAAAGGTGGA+TGG	0.593839	4.2:-79410688	MS.gene066616:CDS
ACAACTTTCCTACCCTTGCA+AGG	0.526333	4.2:+79410935	None:intergenic
ACACTTCCGGTAGTAAAAGA+TGG	0.481870	4.2:+79409751	None:intergenic
ACCCTAAAGGTGGATGGAAG+CGG	0.544390	4.2:-79410682	MS.gene066616:CDS
ACCGCTTCCATCCACCTTTA+GGG	0.271133	4.2:+79410681	None:intergenic
ACTTGCCAAACTGTTTCAGG+TGG	0.566705	4.2:-79411488	MS.gene066616:CDS
AGACAACAATGAGACCCTAA+AGG	0.640662	4.2:-79410695	MS.gene066616:CDS
AGCGGTGGAGCAGATCCTGA+TGG	0.623667	4.2:-79410664	MS.gene066616:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTTGTAAGCGATGTAAA+GGG	-	chr4.2:79410076-79410095	MS.gene066616:intron	30.0%
AATCGTTTGTAATTGGTATC+AGG	-	chr4.2:79410543-79410562	MS.gene066616:intron	30.0%
ATAGTAACATATAGATCACC+AGG	+	chr4.2:79410881-79410900	None:intergenic	30.0%
ATGCTTAATAATGTCCGAAT+AGG	+	chr4.2:79409768-79409787	None:intergenic	30.0%
ATTATACAAACTGTGATAGG+CGG	-	chr4.2:79410192-79410211	MS.gene066616:intron	30.0%
ATTCCTTGTATTAACTGCAA+GGG	-	chr4.2:79410222-79410241	MS.gene066616:intron	30.0%
TACCTTAATCATTACACTTC+CGG	+	chr4.2:79411777-79411796	None:intergenic	30.0%
TACTTATTTCAATTTGGCAG+TGG	-	chr4.2:79411539-79411558	MS.gene066616:CDS	30.0%
TCACAGTTTGTATAATTACC+TGG	+	chr4.2:79410188-79410207	None:intergenic	30.0%
TCTTTGTATGCCATATAACA+TGG	+	chr4.2:79410697-79410716	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	79409702	79411832	79409702	ID=MS.gene066616
chr4.2	mRNA	79409702	79411832	79409702	ID=MS.gene066616.t1;Parent=MS.gene066616
chr4.2	exon	79411785	79411832	79411785	ID=MS.gene066616.t1.exon1;Parent=MS.gene066616.t1
chr4.2	CDS	79411785	79411832	79411785	ID=cds.MS.gene066616.t1;Parent=MS.gene066616.t1
chr4.2	exon	79411609	79411659	79411609	ID=MS.gene066616.t1.exon2;Parent=MS.gene066616.t1
chr4.2	CDS	79411609	79411659	79411609	ID=cds.MS.gene066616.t1;Parent=MS.gene066616.t1
chr4.2	exon	79411427	79411561	79411427	ID=MS.gene066616.t1.exon3;Parent=MS.gene066616.t1
chr4.2	CDS	79411427	79411561	79411427	ID=cds.MS.gene066616.t1;Parent=MS.gene066616.t1
chr4.2	exon	79411271	79411345	79411271	ID=MS.gene066616.t1.exon4;Parent=MS.gene066616.t1
chr4.2	CDS	79411271	79411345	79411271	ID=cds.MS.gene066616.t1;Parent=MS.gene066616.t1
chr4.2	exon	79410897	79410969	79410897	ID=MS.gene066616.t1.exon5;Parent=MS.gene066616.t1
chr4.2	CDS	79410897	79410969	79410897	ID=cds.MS.gene066616.t1;Parent=MS.gene066616.t1
chr4.2	exon	79410630	79410721	79410630	ID=MS.gene066616.t1.exon6;Parent=MS.gene066616.t1
chr4.2	CDS	79410630	79410721	79410630	ID=cds.MS.gene066616.t1;Parent=MS.gene066616.t1
chr4.2	exon	79410463	79410534	79410463	ID=MS.gene066616.t1.exon7;Parent=MS.gene066616.t1
chr4.2	CDS	79410463	79410534	79410463	ID=cds.MS.gene066616.t1;Parent=MS.gene066616.t1
chr4.2	exon	79409702	79409800	79409702	ID=MS.gene066616.t1.exon8;Parent=MS.gene066616.t1
chr4.2	CDS	79409702	79409800	79409702	ID=cds.MS.gene066616.t1;Parent=MS.gene066616.t1

Gene Sequence

>MS.gene066616

ATGAGGGCTGACGGGGAGGATGTCAAGGGTGGCGGGGAGGATGTCAAGGTCGTTTTCCTTCTTCCTATTCGGACATTATTAAGCATGCCAAGTGATTGTTTGATGAAAACCATGATAATAATCTTTCTTATCACAGACTGTCATTGAACTATCTTTTATGGAAACTATTCAAGGGTGCACCAAAACTCTGTCATTTCAGGCAGATGTGCTTTGTAATGCTTGTGGTATGTTTGTTAATGATTGTCAACCTTCACTAGTATTTTGTATTCAGTTGGGTTTGAATTCTGACAAGTCAATGCTCCTTGAAATTAACACATTTCTCACTTGCCAAACTGTTTCAGGTGGGAGTGGTGTTCCTCCTGGTACAAAACCTGAAACTTGTAAGCGATGTAAAGGGTCAGGAAAGGTCAGTATCATGCTGGAATTGATTTAATTCTTGTTACATGCTTGAGAAGTCTTGTTCAATTGATAATTTCGAGATTTCCAGGTAATTATACAAACTGTGATAGGCGGAGTGAAGATTCCTTGTATTAACTGCAAGGGAACTGGAGTAATTGCATCGGTATGGTACAAACTGTCCTCTGCACTTTGCAATATCGATTCTCTTCTATTTAATATGTTAGTTATAAGGGTTCAGAGCTTCAAATATGATAAATGAACTTCCTGTGTCTATGTAACCTGCTTATTGCAATCTGCCGTTATTAGTTTGGTCTACCCTTAATTTTTCTAAATAAAATCATATAGCAGGCAATAAATGACACTATATTCATTACCTGTATTTCTATGGACATGGTGGTCTTTCATACTAATATGAAATTGTGGGAAAATATTGTTGATTTTTAATCGTTTGTAATTGGTATCAGGATTTCTGTAGGCCTTGCAAGGGTAGGAAAGTTGTCAAAGGAACAAAGTCGGTCAAGTTGGATATTATACCTGGTAATTATTTTTTTTTCAATCTTTTTGGAATGCAGTGTTGGAATTTGTTATGTAGGCCATGTTATATGGCATACAAAGAGAAATTTTTTACATGAATGAGAAATCTCTATGTTGATTTCTCTTAAGGTTCCACTCTGAAAAGGTTTACTTATGTATGATTTTTTTCCATTTGCAGGCACAGACAACAATGAGACCCTAAAGGTGGATGGAAGCGGTGGAGCAGATCCTGATGGAGATCATCCTGGTGATCTATATGTTACTATCAAGGTACTTCACTAGCTTAGAAGTCACTGCCAGTTTTATTATTTTTTTGTATTTTAAAACCAAGTCAATTATATTTCTTTCATCTATGCTTTTTGCAGGTTAGGGAAGATCCTGTTTTTCGCAGAGAAGGATTAGATGTTCATGTGAATTCTGTTTTAAGTTTCACTCAGGTAATGTTTCTTGAAGAAAATCTTGAGCAAGAGAAGATAAAAGCTTTTTTAAACTTCGTGTCATTTCATTTTCTCTTCTAACAAATGACTAAAAAATTATCCCAATTTTTACGATCTCTTTCTTTATACTTTGTTTCCTCTCACTTCTTTTCTTCCTAATTTCTGGTCACCATTAGGATCCATTTCCTTCTCAACCAAATCTTTTAGGGACCTAAGTTGTAGTTTACTTTCATAAGAGATCTATTGATTTAAATCGCTATACACTAGACTCACATGGAATGCTCCAAGAAATGTAGCCCTATATGGAGTTGAGATGTCTAAGTGGTATAATCCTTTGGTAGCACATGTATCTCTTGATCTAGTTGAGGACCTTTGTAGGAGCTGCCACGCTGTGAAAGTTTTGACGGCATGAGTTTTGTTTGCCACCTTCTGGTAGAATTGATTGTCTATAATATTTAGTTGGTAAATACTTATTTCAATTTGGCAGTGGCACGGAGGCTTTTGTTTGTGCTAGTTATGTTATCATAATATTTTGGATCCTGAACATCTTTTTTTTTTTCTCATCTTGAACAACTTCATAGTTGTTTGTGTAACTTTATTATTAGTTATAAATTGTAAATAAACTAAATAGTTGAAATTTTTCTTTTAAATATTTATTTCAGGCGATTTTAGGGGCAATCATTGAGGTCCCATCTTTTACTACCGGAAGTGTAATGATTAAGGTAAGCATTGCTATTTCAATACATAATATAGAGGTGTGA

Protein sequence

>MS.gene066616.t1

MRADGEDVKGGGEDVKGAPKLCHFRQMCFVMLVLGLNSDKSMLLEINTFLTCQTVSGGSGVPPGTKPETCKRCKGSGKVIIQTVIGGVKIPCINCKGTGVIASDFCRPCKGRKVVKGTKSVKLDIIPGTDNNETLKVDGSGGADPDGDHPGDLYVTIKVREDPVFRREGLDVHVNSVLSFTQAILGAIIEVPSFTTGSVMIKVSIAISIHNIEV