Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066616.t1 | RHN59209.1 | 95.2 | 126 | 6 | 0 | 34 | 159 | 39 | 164 | 1.80E-64 | 255.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066616.t1 | Q8GWW8 | 55.2 | 163 | 71 | 2 | 41 | 203 | 227 | 387 | 6.8e-44 | 178.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066616.t1 | A0A396I0V1 | 95.2 | 126 | 6 | 0 | 34 | 159 | 39 | 164 | 1.3e-64 | 255.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052190 | MS.gene066616 | 0.832349 | 9.95E-56 | -1.69E-46 |
| MS.gene052333 | MS.gene066616 | 0.818958 | 1.49E-52 | -1.69E-46 |
| MS.gene053166 | MS.gene066616 | 0.824104 | 9.67E-54 | -1.69E-46 |
| MS.gene05415 | MS.gene066616 | 0.820215 | 7.72E-53 | -1.69E-46 |
| MS.gene054236 | MS.gene066616 | 0.803282 | 3.76E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene066616 | -0.817457 | 3.27E-52 | -1.69E-46 |
| MS.gene054467 | MS.gene066616 | 0.805803 | 1.12E-49 | -1.69E-46 |
| MS.gene054468 | MS.gene066616 | 0.807371 | 5.22E-50 | -1.69E-46 |
| MS.gene054559 | MS.gene066616 | 0.815391 | 9.47E-52 | -1.69E-46 |
| MS.gene055227 | MS.gene066616 | 0.808279 | 3.35E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene066616 | 0.818933 | 1.51E-52 | -1.69E-46 |
| MS.gene056506 | MS.gene066616 | 0.813571 | 2.39E-51 | -1.69E-46 |
| MS.gene057012 | MS.gene066616 | 0.80127 | 9.75E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene066616 | 0.816349 | 5.79E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene066616 | 0.819135 | 1.36E-52 | -1.69E-46 |
| MS.gene059161 | MS.gene066616 | 0.802761 | 4.81E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066616.t1 | MTR_4g023490 | 67.290 | 214 | 46 | 4 | 1 | 203 | 108 | 308 | 7.84e-86 | 259 |
| MS.gene066616.t1 | MTR_4g023470 | 63.590 | 195 | 59 | 4 | 9 | 203 | 190 | 372 | 2.71e-72 | 226 |
| MS.gene066616.t1 | MTR_3g027580 | 56.995 | 193 | 71 | 4 | 11 | 203 | 193 | 373 | 6.78e-64 | 204 |
| MS.gene066616.t1 | MTR_5g065160 | 42.466 | 146 | 79 | 2 | 58 | 203 | 223 | 363 | 4.67e-29 | 113 |
| MS.gene066616.t1 | MTR_5g065160 | 42.466 | 146 | 79 | 2 | 58 | 203 | 230 | 370 | 5.01e-29 | 113 |
| MS.gene066616.t1 | MTR_5g065160 | 42.466 | 146 | 79 | 2 | 58 | 203 | 229 | 369 | 5.24e-29 | 112 |
| MS.gene066616.t1 | MTR_5g065160 | 42.466 | 146 | 79 | 2 | 58 | 203 | 230 | 370 | 5.51e-29 | 112 |
| MS.gene066616.t1 | MTR_3g087030 | 34.503 | 171 | 102 | 4 | 27 | 193 | 200 | 364 | 2.34e-21 | 91.3 |
| MS.gene066616.t1 | MTR_2g104030 | 34.641 | 153 | 93 | 4 | 44 | 191 | 209 | 359 | 7.13e-19 | 84.7 |
| MS.gene066616.t1 | MTR_6g471050 | 30.286 | 175 | 113 | 4 | 23 | 193 | 101 | 270 | 6.27e-17 | 79.0 |
| MS.gene066616.t1 | MTR_2g087660 | 32.624 | 141 | 87 | 3 | 69 | 202 | 163 | 302 | 1.87e-15 | 73.9 |
| MS.gene066616.t1 | MTR_2g087660 | 32.624 | 141 | 87 | 3 | 69 | 202 | 163 | 302 | 2.85e-15 | 73.9 |
| MS.gene066616.t1 | MTR_4g050420 | 31.429 | 140 | 88 | 4 | 70 | 202 | 162 | 300 | 5.61e-13 | 67.4 |
| MS.gene066616.t1 | MTR_8g006430 | 30.000 | 140 | 90 | 3 | 70 | 202 | 166 | 304 | 3.83e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066616.t1 | AT5G48030 | 50.777 | 193 | 83 | 4 | 11 | 203 | 207 | 387 | 3.38e-53 | 177 |
| MS.gene066616.t1 | AT1G28210 | 34.868 | 152 | 94 | 2 | 44 | 195 | 178 | 324 | 4.16e-24 | 99.0 |
| MS.gene066616.t1 | AT1G28210 | 34.868 | 152 | 94 | 2 | 44 | 195 | 178 | 324 | 4.46e-24 | 98.6 |
| MS.gene066616.t1 | AT1G28210 | 34.868 | 152 | 94 | 2 | 44 | 195 | 178 | 324 | 5.47e-24 | 98.6 |
| MS.gene066616.t1 | AT2G22360 | 35.359 | 181 | 106 | 6 | 27 | 203 | 203 | 376 | 4.09e-23 | 96.3 |
| MS.gene066616.t1 | AT4G39960 | 35.912 | 181 | 105 | 6 | 27 | 203 | 209 | 382 | 5.76e-22 | 93.2 |
| MS.gene066616.t1 | AT4G39960 | 35.912 | 181 | 105 | 6 | 27 | 203 | 209 | 382 | 5.76e-22 | 93.2 |
| MS.gene066616.t1 | AT1G80030 | 35.948 | 153 | 91 | 4 | 44 | 191 | 214 | 364 | 8.78e-19 | 84.3 |
| MS.gene066616.t1 | AT1G80030 | 35.948 | 153 | 91 | 4 | 44 | 191 | 214 | 364 | 8.78e-19 | 84.3 |
| MS.gene066616.t1 | AT1G80030 | 35.948 | 153 | 91 | 4 | 44 | 191 | 214 | 364 | 8.78e-19 | 84.3 |
| MS.gene066616.t1 | AT1G80030 | 35.948 | 153 | 91 | 4 | 44 | 191 | 214 | 364 | 9.15e-19 | 84.3 |
| MS.gene066616.t1 | AT3G17830 | 29.121 | 182 | 119 | 5 | 26 | 203 | 190 | 365 | 3.08e-17 | 80.1 |
| MS.gene066616.t1 | AT5G22060 | 31.429 | 140 | 88 | 4 | 70 | 202 | 165 | 303 | 1.22e-12 | 66.2 |
| MS.gene066616.t1 | AT3G44110 | 31.429 | 140 | 88 | 4 | 70 | 202 | 164 | 302 | 4.56e-12 | 64.7 |
| MS.gene066616.t1 | AT3G44110 | 31.429 | 140 | 88 | 4 | 70 | 202 | 164 | 302 | 4.82e-12 | 64.3 |
Find 58 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCACTTGCCAAACTGTTTC+AGG | 0.063633 | 4.2:-79411491 | MS.gene066616:CDS |
| TTACATCGCTTACAAGTTTC+AGG | 0.185872 | 4.2:+79411440 | None:intergenic |
| CACCGCTTCCATCCACCTTT+AGG | 0.231060 | 4.2:+79410680 | None:intergenic |
| CACCAAAACTCTGTCATTTC+AGG | 0.263877 | 4.2:-79411633 | MS.gene066616:CDS |
| ACCGCTTCCATCCACCTTTA+GGG | 0.271133 | 4.2:+79410681 | None:intergenic |
| TACCGGAAGTGTAATGATTA+AGG | 0.336445 | 4.2:-79409740 | MS.gene066616:CDS |
| GGGGAGGATGTCAAGGGTGG+CGG | 0.339997 | 4.2:-79411798 | MS.gene066616:CDS |
| TACCTTAATCATTACACTTC+CGG | 0.345765 | 4.2:+79409738 | None:intergenic |
| TGAGAAATGTGTTAATTTCA+AGG | 0.377846 | 4.2:+79411510 | None:intergenic |
| TGTATTAACTGCAAGGGAAC+TGG | 0.394785 | 4.2:-79411284 | MS.gene066616:CDS |
| GGGAGGATGTCAAGGGTGGC+GGG | 0.405249 | 4.2:-79411797 | MS.gene066616:CDS |
| TGCCTGAAATGACAGAGTTT+TGG | 0.416013 | 4.2:+79411631 | None:intergenic |
| GGAGGATGTCAAGGGTGGCG+GGG | 0.420069 | 4.2:-79411796 | MS.gene066616:CDS |
| CACTCCCACCTGAAACAGTT+TGG | 0.428111 | 4.2:+79411483 | None:intergenic |
| GGCTGACGGGGAGGATGTCA+AGG | 0.434836 | 4.2:-79411805 | MS.gene066616:CDS |
| GGTGGGAGTGGTGTTCCTCC+TGG | 0.447737 | 4.2:-79411470 | MS.gene066616:CDS |
| GGATGTCAAGGGTGGCGGGG+AGG | 0.456532 | 4.2:-79411793 | MS.gene066616:CDS |
| GAAACTTGTAAGCGATGTAA+AGG | 0.469263 | 4.2:-79411437 | MS.gene066616:CDS |
| ACACTTCCGGTAGTAAAAGA+TGG | 0.481870 | 4.2:+79409751 | None:intergenic |
| GTAATTATACAAACTGTGAT+AGG | 0.501171 | 4.2:-79411323 | MS.gene066616:CDS |
| TGTAAGCGATGTAAAGGGTC+AGG | 0.505851 | 4.2:-79411431 | MS.gene066616:CDS |
| TATTTCAATACATAATATAG+AGG | 0.507051 | 4.2:-79409707 | MS.gene066616:CDS |
| GACGGGGAGGATGTCAAGGG+TGG | 0.509572 | 4.2:-79411801 | MS.gene066616:CDS |
| GGGTGGCGGGGAGGATGTCA+AGG | 0.511999 | 4.2:-79411784 | MS.gene066616:intron |
| AGGAACAAAGTCGGTCAAGT+TGG | 0.514345 | 4.2:-79410909 | MS.gene066616:CDS |
| GGATTTCTGTAGGCCTTGCA+AGG | 0.518772 | 4.2:-79410948 | MS.gene066616:CDS |
| CAAACTGTTTCAGGTGGGAG+TGG | 0.524427 | 4.2:-79411482 | MS.gene066616:CDS |
| TGATCTATATGTTACTATCA+AGG | 0.526060 | 4.2:-79410629 | MS.gene066616:intron |
| ACAACTTTCCTACCCTTGCA+AGG | 0.526333 | 4.2:+79410935 | None:intergenic |
| TCACCAGGATGATCTCCATC+AGG | 0.528829 | 4.2:+79410649 | None:intergenic |
| AAACTTGTAAGCGATGTAAA+GGG | 0.536037 | 4.2:-79411436 | MS.gene066616:CDS |
| GTTCCCTTGCAGTTAATACA+AGG | 0.537173 | 4.2:+79411287 | None:intergenic |
| ACCCTAAAGGTGGATGGAAG+CGG | 0.544390 | 4.2:-79410682 | MS.gene066616:CDS |
| CACTTCCGGTAGTAAAAGAT+GGG | 0.555178 | 4.2:+79409752 | None:intergenic |
| GATTCCTTGTATTAACTGCA+AGG | 0.556544 | 4.2:-79411291 | MS.gene066616:CDS |
| TCTGTAGGCCTTGCAAGGGT+AGG | 0.558378 | 4.2:-79410943 | MS.gene066616:CDS |
| ACTTGCCAAACTGTTTCAGG+TGG | 0.566705 | 4.2:-79411488 | MS.gene066616:CDS |
| ATTGGTATCAGGATTTCTGT+AGG | 0.591831 | 4.2:-79410958 | MS.gene066616:intron |
| ATTCCTTGTATTAACTGCAA+GGG | 0.592934 | 4.2:-79411290 | MS.gene066616:CDS |
| AATGAGACCCTAAAGGTGGA+TGG | 0.593839 | 4.2:-79410688 | MS.gene066616:CDS |
| GATCCTGATGGAGATCATCC+TGG | 0.594764 | 4.2:-79410652 | MS.gene066616:CDS |
| GCTGACGGGGAGGATGTCAA+GGG | 0.605157 | 4.2:-79411804 | MS.gene066616:CDS |
| CGATATGAGGGCTGACGGGG+AGG | 0.616742 | 4.2:-79411814 | None:intergenic |
| TTTCGATATGAGGGCTGACG+GGG | 0.616945 | 4.2:-79411817 | None:intergenic |
| GTCAAGTTGGATATTATACC+TGG | 0.617468 | 4.2:-79410896 | MS.gene066616:intron |
| GATTTCTGTAGGCCTTGCAA+GGG | 0.619829 | 4.2:-79410947 | MS.gene066616:CDS |
| AGCGGTGGAGCAGATCCTGA+TGG | 0.623667 | 4.2:-79410664 | MS.gene066616:CDS |
| CTTGCCAAACTGTTTCAGGT+GGG | 0.630071 | 4.2:-79411487 | MS.gene066616:CDS |
| ATAGTAACATATAGATCACC+AGG | 0.633369 | 4.2:+79410634 | None:intergenic |
| CTAAAGGTGGATGGAAGCGG+TGG | 0.634004 | 4.2:-79410679 | MS.gene066616:CDS |
| AGACAACAATGAGACCCTAA+AGG | 0.640662 | 4.2:-79410695 | MS.gene066616:CDS |
| AAGGGTAGGAAAGTTGTCAA+AGG | 0.647884 | 4.2:-79410929 | MS.gene066616:CDS |
| AGTTGTCAAAGGAACAAAGT+CGG | 0.652946 | 4.2:-79410918 | MS.gene066616:CDS |
| GGGAACTGGAGTAATTGCAT+CGG | 0.653383 | 4.2:-79411270 | MS.gene066616:intron |
| CAACAATGAGACCCTAAAGG+TGG | 0.653987 | 4.2:-79410692 | MS.gene066616:CDS |
| GCGATGTAAAGGGTCAGGAA+AGG | 0.655583 | 4.2:-79411426 | MS.gene066616:intron |
| GATGTGCTTTGTAATGCTTG+TGG | 0.664164 | 4.2:-79411608 | MS.gene066616:intron |
| ATTATACAAACTGTGATAGG+CGG | 0.691361 | 4.2:-79411320 | MS.gene066616:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACAAAAAAATAATAAAAC+TGG | + | chr4.2:79410934-79410953 | None:intergenic | 10.0% |
| !! | ATTTAATATGTTAGTTATAA+GGG | - | chr4.2:79410311-79410330 | MS.gene066616:intron | 10.0% |
| !! | TATTTAATATGTTAGTTATA+AGG | - | chr4.2:79410310-79410329 | MS.gene066616:intron | 10.0% |
| !!! | GATTTTATTTAGAAAAATTA+AGG | + | chr4.2:79410420-79410439 | None:intergenic | 10.0% |
| !!! | TATTTTTTTTTCAATCTTTT+TGG | - | chr4.2:79410643-79410662 | MS.gene066616:CDS | 10.0% |
| !!! | TTCTTTTAAATATTTATTTC+AGG | - | chr4.2:79411712-79411731 | MS.gene066616:intron | 10.0% |
| !! | TATTTCAATACATAATATAG+AGG | - | chr4.2:79411805-79411824 | MS.gene066616:CDS | 15.0% |
| !! | TTGAAAAAAAAATAATTACC+AGG | + | chr4.2:79410637-79410656 | None:intergenic | 15.0% |
| !!! | GTTATGTTATCATAATATTT+TGG | - | chr4.2:79411585-79411604 | MS.gene066616:intron | 15.0% |
| !! | AGAAAAAAAAAAAGATGTTC+AGG | + | chr4.2:79411613-79411632 | None:intergenic | 20.0% |
| !! | GATAAGAAAGATTATTATCA+TGG | + | chr4.2:79409814-79409833 | None:intergenic | 20.0% |
| !! | GATTGTCTATAATATTTAGT+TGG | - | chr4.2:79411512-79411531 | MS.gene066616:CDS | 20.0% |
| !! | GGTAAATACTTATTTCAATT+TGG | - | chr4.2:79411533-79411552 | MS.gene066616:CDS | 20.0% |
| !! | TCATACTAATATGAAATTGT+GGG | - | chr4.2:79410502-79410521 | MS.gene066616:CDS | 20.0% |
| !! | TCTAAATAAAATCATATAGC+AGG | - | chr4.2:79410427-79410446 | MS.gene066616:intron | 20.0% |
| !! | TGAAAGAAATATAATTGACT+TGG | + | chr4.2:79410964-79410983 | None:intergenic | 20.0% |
| !! | TTCATACTAATATGAAATTG+TGG | - | chr4.2:79410501-79410520 | MS.gene066616:CDS | 20.0% |
| !!! | GATTTTTAATCGTTTGTAAT+TGG | - | chr4.2:79410536-79410555 | MS.gene066616:intron | 20.0% |
| ! | AAGAAAGAGATCGTAAAAAT+TGG | + | chr4.2:79411176-79411195 | None:intergenic | 25.0% |
| ! | AGAAAGAGATCGTAAAAATT+GGG | + | chr4.2:79411175-79411194 | None:intergenic | 25.0% |
| ! | ATGAAAGTAAACTACAACTT+AGG | + | chr4.2:79411285-79411304 | None:intergenic | 25.0% |
| ! | GTAATTATACAAACTGTGAT+AGG | - | chr4.2:79410189-79410208 | MS.gene066616:intron | 25.0% |
| ! | TGAATACAAAATACTAGTGA+AGG | + | chr4.2:79409952-79409971 | None:intergenic | 25.0% |
| ! | TGAGAAATGTGTTAATTTCA+AGG | + | chr4.2:79410005-79410024 | None:intergenic | 25.0% |
| ! | TGATCTATATGTTACTATCA+AGG | - | chr4.2:79410883-79410902 | MS.gene066616:intron | 25.0% |
| !! | ACTAGTATTTTGTATTCAGT+TGG | - | chr4.2:79409954-79409973 | MS.gene066616:intron | 25.0% |
| !! | ATTCATTACCTGTATTTCTA+TGG | - | chr4.2:79410466-79410485 | MS.gene066616:CDS | 25.0% |
| !! | ATTTATTTCAGGCGATTTTA+GGG | - | chr4.2:79411723-79411742 | MS.gene066616:intron | 25.0% |
| !! | CTAGTATTTTGTATTCAGTT+GGG | - | chr4.2:79409955-79409974 | MS.gene066616:intron | 25.0% |
| !! | CTTTTATGGAAACTATTCAA+GGG | - | chr4.2:79409854-79409873 | MS.gene066616:intron | 25.0% |
| !! | TATTTATTTCAGGCGATTTT+AGG | - | chr4.2:79411722-79411741 | MS.gene066616:intron | 25.0% |
| !! | TCTTTTATGGAAACTATTCA+AGG | - | chr4.2:79409853-79409872 | MS.gene066616:intron | 25.0% |
| !! | TGTCATTGAACTATCTTTTA+TGG | - | chr4.2:79409840-79409859 | MS.gene066616:intron | 25.0% |
| !!! | TATGATTTTTTTCCATTTGC+AGG | - | chr4.2:79410791-79410810 | MS.gene066616:intron | 25.0% |
| AAACTTGTAAGCGATGTAAA+GGG | - | chr4.2:79410076-79410095 | MS.gene066616:intron | 30.0% | |
| AATCGTTTGTAATTGGTATC+AGG | - | chr4.2:79410543-79410562 | MS.gene066616:intron | 30.0% | |
| ATAGTAACATATAGATCACC+AGG | + | chr4.2:79410881-79410900 | None:intergenic | 30.0% | |
| ATGCTTAATAATGTCCGAAT+AGG | + | chr4.2:79409768-79409787 | None:intergenic | 30.0% | |
| ATTATACAAACTGTGATAGG+CGG | - | chr4.2:79410192-79410211 | MS.gene066616:intron | 30.0% | |
| ATTCCTTGTATTAACTGCAA+GGG | - | chr4.2:79410222-79410241 | MS.gene066616:intron | 30.0% | |
| TACCTTAATCATTACACTTC+CGG | + | chr4.2:79411777-79411796 | None:intergenic | 30.0% | |
| TACTTATTTCAATTTGGCAG+TGG | - | chr4.2:79411539-79411558 | MS.gene066616:CDS | 30.0% | |
| TCACAGTTTGTATAATTACC+TGG | + | chr4.2:79410188-79410207 | None:intergenic | 30.0% | |
| TCTTTGTATGCCATATAACA+TGG | + | chr4.2:79410697-79410716 | None:intergenic | 30.0% | |
| ! | ATAAGTAAACCTTTTCAGAG+TGG | + | chr4.2:79410770-79410789 | None:intergenic | 30.0% |
| ! | CTTCTCAACCAAATCTTTTA+GGG | - | chr4.2:79411258-79411277 | MS.gene066616:intron | 30.0% |
| ! | CTTCTTTTCTTCCTAATTTC+TGG | - | chr4.2:79411215-79411234 | MS.gene066616:intron | 30.0% |
| ! | GTTTTCATCAAACAATCACT+TGG | + | chr4.2:79409792-79409811 | None:intergenic | 30.0% |
| ! | TTGATAATTTCGAGATTTCC+AGG | - | chr4.2:79410167-79410186 | MS.gene066616:intron | 30.0% |
| ! | TTTATTTCAGGCGATTTTAG+GGG | - | chr4.2:79411724-79411743 | MS.gene066616:intron | 30.0% |
| !! | AGTGTTGGAATTTGTTATGT+AGG | - | chr4.2:79410671-79410690 | MS.gene066616:CDS | 30.0% |
| !! | CTCTATGTTGATTTCTCTTA+AGG | - | chr4.2:79410742-79410761 | MS.gene066616:intron | 30.0% |
| !!! | TTCTGTTTTAAGTTTCACTC+AGG | - | chr4.2:79411050-79411069 | MS.gene066616:intron | 30.0% |
| ACTTAGGTCCCTAAAAGATT+TGG | + | chr4.2:79411269-79411288 | None:intergenic | 35.0% | |
| AGACAATCAATTCTACCAGA+AGG | + | chr4.2:79411500-79411519 | None:intergenic | 35.0% | |
| AGACATCTCAACTCCATATA+GGG | + | chr4.2:79411371-79411390 | None:intergenic | 35.0% | |
| AGGGTAGACCAAACTAATAA+CGG | + | chr4.2:79410400-79410419 | None:intergenic | 35.0% | |
| AGTTGTCAAAGGAACAAAGT+CGG | - | chr4.2:79410594-79410613 | MS.gene066616:intron | 35.0% | |
| ATAATGTCCGAATAGGAAGA+AGG | + | chr4.2:79409761-79409780 | None:intergenic | 35.0% | |
| ATTGGTATCAGGATTTCTGT+AGG | - | chr4.2:79410554-79410573 | MS.gene066616:intron | 35.0% | |
| GAAACTTGTAAGCGATGTAA+AGG | - | chr4.2:79410075-79410094 | MS.gene066616:intron | 35.0% | |
| GATTCCTTGTATTAACTGCA+AGG | - | chr4.2:79410221-79410240 | MS.gene066616:intron | 35.0% | |
| GTCTAAGTGGTATAATCCTT+TGG | - | chr4.2:79411387-79411406 | MS.gene066616:intron | 35.0% | |
| GTTATGTAGGCCATGTTATA+TGG | - | chr4.2:79410684-79410703 | MS.gene066616:CDS | 35.0% | |
| TAGACATCTCAACTCCATAT+AGG | + | chr4.2:79411372-79411391 | None:intergenic | 35.0% | |
| TGTATCTCTTGATCTAGTTG+AGG | - | chr4.2:79411417-79411436 | MS.gene066616:intron | 35.0% | |
| TTACATCGCTTACAAGTTTC+AGG | + | chr4.2:79410075-79410094 | None:intergenic | 35.0% | |
| TTAGGAAGAAAAGAAGTGAG+AGG | + | chr4.2:79411211-79411230 | None:intergenic | 35.0% | |
| ! | AGATTTGGTTGAGAAGGAAA+TGG | + | chr4.2:79411254-79411273 | None:intergenic | 35.0% |
| ! | CCTAAAAGATTTGGTTGAGA+AGG | + | chr4.2:79411260-79411279 | None:intergenic | 35.0% |
| ! | CCTTCTCAACCAAATCTTTT+AGG | - | chr4.2:79411257-79411276 | MS.gene066616:intron | 35.0% |
| ! | TACCGGAAGTGTAATGATTA+AGG | - | chr4.2:79411772-79411791 | MS.gene066616:intron | 35.0% |
| ! | TACCTGTATTTCTATGGACA+TGG | - | chr4.2:79410472-79410491 | MS.gene066616:CDS | 35.0% |
| ! | TCGTTTTCCTTCTTCCTATT+CGG | - | chr4.2:79409751-79409770 | MS.gene066616:CDS | 35.0% |
| !! | ATCTATGCTTTTTGCAGGTT+AGG | - | chr4.2:79410983-79411002 | MS.gene066616:intron | 35.0% |
| !! | CTTTCATCTATGCTTTTTGC+AGG | - | chr4.2:79410978-79410997 | MS.gene066616:intron | 35.0% |
| !! | GTCAAGTTGGATATTATACC+TGG | - | chr4.2:79410616-79410635 | MS.gene066616:intron | 35.0% |
| !! | TCTATGCTTTTTGCAGGTTA+GGG | - | chr4.2:79410984-79411003 | MS.gene066616:intron | 35.0% |
| !!! | ATCTTTTTGGAATGCAGTGT+TGG | - | chr4.2:79410656-79410675 | MS.gene066616:CDS | 35.0% |
| AAGGGTAGGAAAGTTGTCAA+AGG | - | chr4.2:79410583-79410602 | MS.gene066616:intron | 40.0% | |
| AATCCTTCTCTGCGAAAAAC+AGG | + | chr4.2:79411015-79411034 | None:intergenic | 40.0% | |
| ACACTTCCGGTAGTAAAAGA+TGG | + | chr4.2:79411764-79411783 | None:intergenic | 40.0% | |
| AGACAACAATGAGACCCTAA+AGG | - | chr4.2:79410817-79410836 | MS.gene066616:intron | 40.0% | |
| AGAGATACATGTGCTACCAA+AGG | + | chr4.2:79411406-79411425 | None:intergenic | 40.0% | |
| ATCGATATTGCAAAGTGCAG+AGG | + | chr4.2:79410283-79410302 | None:intergenic | 40.0% | |
| ATCTAGTTGAGGACCTTTGT+AGG | - | chr4.2:79411428-79411447 | MS.gene066616:CDS | 40.0% | |
| ATGGAGTTGAGATGTCTAAG+TGG | - | chr4.2:79411374-79411393 | MS.gene066616:intron | 40.0% | |
| ATTTCAATTTGGCAGTGGCA+CGG | - | chr4.2:79411544-79411563 | MS.gene066616:intron | 40.0% | |
| CAATCAATTCTACCAGAAGG+TGG | + | chr4.2:79411497-79411516 | None:intergenic | 40.0% | |
| CACCATGTCCATAGAAATAC+AGG | + | chr4.2:79410477-79410496 | None:intergenic | 40.0% | |
| CACTTCCGGTAGTAAAAGAT+GGG | + | chr4.2:79411763-79411782 | None:intergenic | 40.0% | |
| CCAAGAAATGTAGCCCTATA+TGG | - | chr4.2:79411355-79411374 | MS.gene066616:intron | 40.0% | |
| CCATATAGGGCTACATTTCT+TGG | + | chr4.2:79411358-79411377 | None:intergenic | 40.0% | |
| CCTAATGGTGACCAGAAATT+AGG | + | chr4.2:79411229-79411248 | None:intergenic | 40.0% | |
| GAGAAGGAAATGGATCCTAA+TGG | + | chr4.2:79411244-79411263 | None:intergenic | 40.0% | |
| GATGTGCTTTGTAATGCTTG+TGG | - | chr4.2:79409904-79409923 | MS.gene066616:intron | 40.0% | |
| GCAATCTGCCGTTATTAGTT+TGG | - | chr4.2:79410389-79410408 | MS.gene066616:intron | 40.0% | |
| GTTCCCTTGCAGTTAATACA+AGG | + | chr4.2:79410228-79410247 | None:intergenic | 40.0% | |
| TAAGCAGGTTACATAGACAC+AGG | + | chr4.2:79410367-79410386 | None:intergenic | 40.0% | |
| TGTATTAACTGCAAGGGAAC+TGG | - | chr4.2:79410228-79410247 | MS.gene066616:intron | 40.0% | |
| ! | CACCAAAACTCTGTCATTTC+AGG | - | chr4.2:79409879-79409898 | MS.gene066616:intron | 40.0% |
| ! | CTGTATTTCTATGGACATGG+TGG | - | chr4.2:79410475-79410494 | MS.gene066616:CDS | 40.0% |
| ! | CTTAAGGTTCCACTCTGAAA+AGG | - | chr4.2:79410758-79410777 | MS.gene066616:intron | 40.0% |
| ! | TGCCTGAAATGACAGAGTTT+TGG | + | chr4.2:79409884-79409903 | None:intergenic | 40.0% |
| !! | CCTAATTTCTGGTCACCATT+AGG | - | chr4.2:79411226-79411245 | MS.gene066616:intron | 40.0% |
| !! | GATTTTAGGGGCAATCATTG+AGG | - | chr4.2:79411736-79411755 | MS.gene066616:intron | 40.0% |
| !!! | CAAGTTTCAGGTTTTGTACC+AGG | + | chr4.2:79410063-79410082 | None:intergenic | 40.0% |
| AACGGCAGATTGCAATAAGC+AGG | + | chr4.2:79410382-79410401 | None:intergenic | 45.0% | |
| AATGAGACCCTAAAGGTGGA+TGG | - | chr4.2:79410824-79410843 | MS.gene066616:intron | 45.0% | |
| ACAACTTTCCTACCCTTGCA+AGG | + | chr4.2:79410580-79410599 | None:intergenic | 45.0% | |
| ACTTGCCAAACTGTTTCAGG+TGG | - | chr4.2:79410024-79410043 | MS.gene066616:intron | 45.0% | |
| AGGAAAGGTCAGTATCATGC+TGG | - | chr4.2:79410101-79410120 | MS.gene066616:intron | 45.0% | |
| AGGAACAAAGTCGGTCAAGT+TGG | - | chr4.2:79410603-79410622 | MS.gene066616:intron | 45.0% | |
| CAACAATGAGACCCTAAAGG+TGG | - | chr4.2:79410820-79410839 | MS.gene066616:intron | 45.0% | |
| CGCTATACACTAGACTCACA+TGG | - | chr4.2:79411326-79411345 | MS.gene066616:CDS | 45.0% | |
| CTCACTTGCCAAACTGTTTC+AGG | - | chr4.2:79410021-79410040 | MS.gene066616:intron | 45.0% | |
| GATTTCTGTAGGCCTTGCAA+GGG | - | chr4.2:79410565-79410584 | MS.gene066616:intron | 45.0% | |
| GGGAACTGGAGTAATTGCAT+CGG | - | chr4.2:79410242-79410261 | MS.gene066616:intron | 45.0% | |
| TGTAAGCGATGTAAAGGGTC+AGG | - | chr4.2:79410081-79410100 | MS.gene066616:intron | 45.0% | |
| TTGTTGTCTGTGCCTGCAAA+TGG | + | chr4.2:79410806-79410825 | None:intergenic | 45.0% | |
| ! | CTGGAGTAATTGCATCGGTA+TGG | - | chr4.2:79410247-79410266 | MS.gene066616:intron | 45.0% |
| ! | CTTGCCAAACTGTTTCAGGT+GGG | - | chr4.2:79410025-79410044 | MS.gene066616:intron | 45.0% |
| ! | GAGGTCCCATCTTTTACTAC+CGG | - | chr4.2:79411755-79411774 | MS.gene066616:intron | 45.0% |
| !! | CCACGCTGTGAAAGTTTTGA+CGG | - | chr4.2:79411456-79411475 | MS.gene066616:CDS | 45.0% |
| !! | GATCCTGTTTTTCGCAGAGA+AGG | - | chr4.2:79411009-79411028 | MS.gene066616:intron | 45.0% |
| !!! | GAGTTTTGTTTGCCACCTTC+TGG | - | chr4.2:79411482-79411501 | MS.gene066616:CDS | 45.0% |
| !!! | GTTTCAGGTTTTGTACCAGG+AGG | + | chr4.2:79410060-79410079 | None:intergenic | 45.0% |
| !!! | ATTTTATTTAGAAAAATTAA+GGG | + | chr4.2:79410419-79410438 | None:intergenic | 5.0% |
| ACCCTAAAGGTGGATGGAAG+CGG | - | chr4.2:79410830-79410849 | MS.gene066616:intron | 50.0% | |
| ACCGCTTCCATCCACCTTTA+GGG | + | chr4.2:79410834-79410853 | None:intergenic | 50.0% | |
| CACTCCCACCTGAAACAGTT+TGG | + | chr4.2:79410032-79410051 | None:intergenic | 50.0% | |
| CCGTCAAAACTTTCACAGCG+TGG | + | chr4.2:79411459-79411478 | None:intergenic | 50.0% | |
| GATCCTGATGGAGATCATCC+TGG | - | chr4.2:79410860-79410879 | MS.gene066616:intron | 50.0% | |
| GCGATGTAAAGGGTCAGGAA+AGG | - | chr4.2:79410086-79410105 | MS.gene066616:intron | 50.0% | |
| GGATTTCTGTAGGCCTTGCA+AGG | - | chr4.2:79410564-79410583 | MS.gene066616:intron | 50.0% | |
| TCACCAGGATGATCTCCATC+AGG | + | chr4.2:79410866-79410885 | None:intergenic | 50.0% | |
| ! | CAAACTGTTTCAGGTGGGAG+TGG | - | chr4.2:79410030-79410049 | MS.gene066616:intron | 50.0% |
| CACCGCTTCCATCCACCTTT+AGG | + | chr4.2:79410835-79410854 | None:intergenic | 55.0% | |
| CTAAAGGTGGATGGAAGCGG+TGG | - | chr4.2:79410833-79410852 | MS.gene066616:intron | 55.0% | |
| TCAATTTGGCAGTGGCACGG+AGG | - | chr4.2:79411547-79411566 | MS.gene066616:intron | 55.0% | |
| TCTGTAGGCCTTGCAAGGGT+AGG | - | chr4.2:79410569-79410588 | MS.gene066616:intron | 55.0% | |
| AGCGGTGGAGCAGATCCTGA+TGG | - | chr4.2:79410848-79410867 | MS.gene066616:intron | 60.0% | |
| CAGCGTGGCAGCTCCTACAA+AGG | + | chr4.2:79411444-79411463 | None:intergenic | 60.0% | |
| GCTGACGGGGAGGATGTCAA+GGG | - | chr4.2:79409708-79409727 | MS.gene066616:CDS | 60.0% | |
| GACGGGGAGGATGTCAAGGG+TGG | - | chr4.2:79409711-79409730 | MS.gene066616:CDS | 65.0% | |
| GGAGGATGTCAAGGGTGGCG+GGG | - | chr4.2:79409716-79409735 | MS.gene066616:CDS | 65.0% | |
| GGCTGACGGGGAGGATGTCA+AGG | - | chr4.2:79409707-79409726 | MS.gene066616:CDS | 65.0% | |
| GGGAGGATGTCAAGGGTGGC+GGG | - | chr4.2:79409715-79409734 | MS.gene066616:CDS | 65.0% | |
| GGGGAGGATGTCAAGGGTGG+CGG | - | chr4.2:79409714-79409733 | MS.gene066616:CDS | 65.0% | |
| GGTGGGAGTGGTGTTCCTCC+TGG | - | chr4.2:79410042-79410061 | MS.gene066616:intron | 65.0% | |
| !! | GGATGTCAAGGGTGGCGGGG+AGG | - | chr4.2:79409719-79409738 | MS.gene066616:CDS | 70.0% |
| !! | GGGTGGCGGGGAGGATGTCA+AGG | - | chr4.2:79409728-79409747 | MS.gene066616:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 79409702 | 79411832 | 79409702 | ID=MS.gene066616 |
| chr4.2 | mRNA | 79409702 | 79411832 | 79409702 | ID=MS.gene066616.t1;Parent=MS.gene066616 |
| chr4.2 | exon | 79411785 | 79411832 | 79411785 | ID=MS.gene066616.t1.exon1;Parent=MS.gene066616.t1 |
| chr4.2 | CDS | 79411785 | 79411832 | 79411785 | ID=cds.MS.gene066616.t1;Parent=MS.gene066616.t1 |
| chr4.2 | exon | 79411609 | 79411659 | 79411609 | ID=MS.gene066616.t1.exon2;Parent=MS.gene066616.t1 |
| chr4.2 | CDS | 79411609 | 79411659 | 79411609 | ID=cds.MS.gene066616.t1;Parent=MS.gene066616.t1 |
| chr4.2 | exon | 79411427 | 79411561 | 79411427 | ID=MS.gene066616.t1.exon3;Parent=MS.gene066616.t1 |
| chr4.2 | CDS | 79411427 | 79411561 | 79411427 | ID=cds.MS.gene066616.t1;Parent=MS.gene066616.t1 |
| chr4.2 | exon | 79411271 | 79411345 | 79411271 | ID=MS.gene066616.t1.exon4;Parent=MS.gene066616.t1 |
| chr4.2 | CDS | 79411271 | 79411345 | 79411271 | ID=cds.MS.gene066616.t1;Parent=MS.gene066616.t1 |
| chr4.2 | exon | 79410897 | 79410969 | 79410897 | ID=MS.gene066616.t1.exon5;Parent=MS.gene066616.t1 |
| chr4.2 | CDS | 79410897 | 79410969 | 79410897 | ID=cds.MS.gene066616.t1;Parent=MS.gene066616.t1 |
| chr4.2 | exon | 79410630 | 79410721 | 79410630 | ID=MS.gene066616.t1.exon6;Parent=MS.gene066616.t1 |
| chr4.2 | CDS | 79410630 | 79410721 | 79410630 | ID=cds.MS.gene066616.t1;Parent=MS.gene066616.t1 |
| chr4.2 | exon | 79410463 | 79410534 | 79410463 | ID=MS.gene066616.t1.exon7;Parent=MS.gene066616.t1 |
| chr4.2 | CDS | 79410463 | 79410534 | 79410463 | ID=cds.MS.gene066616.t1;Parent=MS.gene066616.t1 |
| chr4.2 | exon | 79409702 | 79409800 | 79409702 | ID=MS.gene066616.t1.exon8;Parent=MS.gene066616.t1 |
| chr4.2 | CDS | 79409702 | 79409800 | 79409702 | ID=cds.MS.gene066616.t1;Parent=MS.gene066616.t1 |
| Gene Sequence |
| Protein sequence |
