Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067520.t1 | XP_013468242.1 | 82.3 | 586 | 104 | 0 | 1 | 586 | 1 | 586 | 6.20E-123 | 451.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067520.t1 | Q9ZQC5 | 34.8 | 624 | 328 | 11 | 1 | 586 | 1 | 583 | 1.5e-29 | 132.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067520.t1 | A0A072VJQ3 | 82.3 | 586 | 104 | 0 | 1 | 586 | 1 | 586 | 4.5e-123 | 451.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene067520 | 0.826073 | 3.31E-54 | -1.69E-46 |
| MS.gene053144 | MS.gene067520 | 0.825953 | 3.54E-54 | -1.69E-46 |
| MS.gene053538 | MS.gene067520 | 0.804318 | 2.29E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene067520 | 0.835066 | 2.08E-56 | -1.69E-46 |
| MS.gene056228 | MS.gene067520 | 0.822524 | 2.26E-53 | -1.69E-46 |
| MS.gene058206 | MS.gene067520 | 0.813103 | 3.03E-51 | -1.69E-46 |
| MS.gene05894 | MS.gene067520 | 0.821547 | 3.81E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene008635 | MS.gene067520 | PPI |
| MS.gene03912 | MS.gene067520 | PPI |
| MS.gene048551 | MS.gene067520 | PPI |
| MS.gene39455 | MS.gene067520 | PPI |
| MS.gene029219 | MS.gene067520 | PPI |
| MS.gene067520 | MS.gene57038 | PPI |
| MS.gene26785 | MS.gene067520 | PPI |
| MS.gene067520 | MS.gene009801 | PPI |
| MS.gene067520 | MS.gene05775 | PPI |
| MS.gene067520 | MS.gene064148 | PPI |
| MS.gene020474 | MS.gene067520 | PPI |
| MS.gene31930 | MS.gene067520 | PPI |
| MS.gene067520 | MS.gene31961 | PPI |
| MS.gene067520 | MS.gene56986 | PPI |
| MS.gene030154 | MS.gene067520 | PPI |
| MS.gene067520 | MS.gene39229 | PPI |
| MS.gene93135 | MS.gene067520 | PPI |
| MS.gene54155 | MS.gene067520 | PPI |
| MS.gene067520 | MS.gene76250 | PPI |
| MS.gene015702 | MS.gene067520 | PPI |
| MS.gene029217 | MS.gene067520 | PPI |
| MS.gene23912 | MS.gene067520 | PPI |
| MS.gene065074 | MS.gene067520 | PPI |
| MS.gene037356 | MS.gene067520 | PPI |
| MS.gene68625 | MS.gene067520 | PPI |
| MS.gene50208 | MS.gene067520 | PPI |
| MS.gene063692 | MS.gene067520 | PPI |
| MS.gene33795 | MS.gene067520 | PPI |
| MS.gene067520 | MS.gene034650 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067520.t1 | MTR_1g066850 | 96.416 | 586 | 21 | 0 | 1 | 586 | 1 | 586 | 0.0 | 1117 |
| MS.gene067520.t1 | MTR_7g100730 | 61.897 | 622 | 189 | 7 | 1 | 586 | 1 | 610 | 0.0 | 632 |
| MS.gene067520.t1 | MTR_4g461060 | 44.374 | 631 | 289 | 9 | 1 | 583 | 1 | 617 | 3.58e-134 | 405 |
| MS.gene067520.t1 | MTR_4g461060 | 44.249 | 626 | 287 | 9 | 6 | 583 | 3 | 614 | 3.15e-132 | 400 |
| MS.gene067520.t1 | MTR_7g061150 | 62.567 | 374 | 96 | 5 | 245 | 586 | 2 | 363 | 2.39e-126 | 376 |
| MS.gene067520.t1 | MTR_2g093260 | 41.763 | 431 | 182 | 10 | 191 | 583 | 83 | 482 | 4.43e-69 | 231 |
| MS.gene067520.t1 | MTR_5g007350 | 29.304 | 273 | 145 | 9 | 12 | 250 | 38 | 296 | 6.94e-14 | 75.5 |
| MS.gene067520.t1 | MTR_2g093240 | 34.483 | 116 | 41 | 2 | 471 | 586 | 1 | 81 | 7.13e-14 | 67.8 |
| MS.gene067520.t1 | MTR_4g478190 | 27.829 | 327 | 190 | 11 | 7 | 287 | 8 | 334 | 7.77e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067520.t1 | AT2G37080 | 46.094 | 640 | 232 | 13 | 1 | 586 | 1 | 581 | 9.54e-147 | 436 |
| MS.gene067520.t1 | AT2G37080 | 45.950 | 642 | 232 | 14 | 1 | 586 | 1 | 583 | 8.93e-145 | 431 |
| MS.gene067520.t1 | AT2G37080 | 45.950 | 642 | 232 | 14 | 1 | 586 | 1 | 583 | 8.93e-145 | 431 |
| MS.gene067520.t1 | AT5G60210 | 39.350 | 615 | 287 | 12 | 1 | 583 | 1 | 561 | 6.64e-106 | 330 |
| MS.gene067520.t1 | AT5G60210 | 39.350 | 615 | 287 | 12 | 1 | 583 | 1 | 561 | 6.64e-106 | 330 |
| MS.gene067520.t1 | AT5G60210 | 39.350 | 615 | 287 | 12 | 1 | 583 | 1 | 561 | 6.64e-106 | 330 |
| MS.gene067520.t1 | AT5G60210 | 39.350 | 615 | 287 | 12 | 1 | 583 | 1 | 561 | 6.64e-106 | 330 |
| MS.gene067520.t1 | AT5G60210 | 38.689 | 610 | 288 | 12 | 6 | 583 | 30 | 585 | 2.42e-101 | 319 |
| MS.gene067520.t1 | AT5G60210 | 38.689 | 610 | 288 | 12 | 6 | 583 | 30 | 585 | 2.42e-101 | 319 |
| MS.gene067520.t1 | AT3G53350 | 37.888 | 322 | 147 | 11 | 1 | 296 | 1 | 295 | 7.35e-45 | 164 |
| MS.gene067520.t1 | AT3G53350 | 33.438 | 320 | 104 | 8 | 275 | 586 | 176 | 394 | 5.05e-30 | 122 |
| MS.gene067520.t1 | AT3G53350 | 37.888 | 322 | 147 | 11 | 1 | 296 | 1 | 295 | 7.35e-45 | 164 |
| MS.gene067520.t1 | AT3G53350 | 33.438 | 320 | 104 | 8 | 275 | 586 | 176 | 394 | 5.05e-30 | 122 |
| MS.gene067520.t1 | AT3G53350 | 37.654 | 324 | 147 | 12 | 1 | 296 | 1 | 297 | 5.80e-43 | 159 |
| MS.gene067520.t1 | AT3G53350 | 33.438 | 320 | 104 | 8 | 275 | 586 | 178 | 396 | 6.31e-30 | 122 |
| MS.gene067520.t1 | AT3G53350 | 37.654 | 324 | 147 | 12 | 1 | 296 | 1 | 297 | 5.80e-43 | 159 |
| MS.gene067520.t1 | AT3G53350 | 33.438 | 320 | 104 | 8 | 275 | 586 | 178 | 396 | 6.31e-30 | 122 |
| MS.gene067520.t1 | AT3G53350 | 37.654 | 324 | 147 | 12 | 1 | 296 | 1 | 297 | 5.80e-43 | 159 |
| MS.gene067520.t1 | AT3G53350 | 33.438 | 320 | 104 | 8 | 275 | 586 | 178 | 396 | 6.31e-30 | 122 |
| MS.gene067520.t1 | AT3G53350 | 50.811 | 185 | 64 | 6 | 7 | 185 | 18 | 181 | 3.74e-42 | 157 |
| MS.gene067520.t1 | AT3G53350 | 33.438 | 320 | 104 | 8 | 275 | 586 | 187 | 405 | 1.10e-29 | 121 |
| MS.gene067520.t1 | AT3G53350 | 50.267 | 187 | 64 | 7 | 7 | 185 | 18 | 183 | 2.41e-40 | 152 |
| MS.gene067520.t1 | AT3G53350 | 33.438 | 320 | 104 | 8 | 275 | 586 | 189 | 407 | 1.26e-29 | 121 |
| MS.gene067520.t1 | AT3G53350 | 50.267 | 187 | 64 | 7 | 7 | 185 | 18 | 183 | 2.41e-40 | 152 |
| MS.gene067520.t1 | AT3G53350 | 33.438 | 320 | 104 | 8 | 275 | 586 | 189 | 407 | 1.26e-29 | 121 |
| MS.gene067520.t1 | AT3G53350 | 44.344 | 221 | 66 | 7 | 1 | 185 | 1 | 200 | 6.08e-39 | 148 |
| MS.gene067520.t1 | AT3G53350 | 33.438 | 320 | 104 | 8 | 275 | 586 | 206 | 424 | 4.22e-29 | 120 |
| MS.gene067520.t1 | AT1G78430 | 38.418 | 177 | 93 | 4 | 411 | 586 | 162 | 323 | 1.30e-21 | 96.7 |
| MS.gene067520.t1 | AT1G17140 | 33.632 | 223 | 125 | 10 | 373 | 586 | 135 | 343 | 3.14e-14 | 74.7 |
| MS.gene067520.t1 | AT1G17140 | 33.632 | 223 | 125 | 10 | 373 | 586 | 135 | 343 | 3.14e-14 | 74.7 |
| MS.gene067520.t1 | AT5G16730 | 28.646 | 384 | 207 | 14 | 19 | 346 | 24 | 396 | 8.78e-12 | 68.6 |
Find 0 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATACATTCTATTTAA+TGG | - | 10809:11213-11232 | MS.gene067520:intergenic | 10.0% |
| !! | TGTTTATGAAAAATATTAAT+TGG | + | 10809:11363-11382 | MS.gene067520:intron | 10.0% |
| !!! | AAACAATTGTAAATATTTTT+GGG | + | 10809:11156-11175 | MS.gene067520:intron | 10.0% |
| !!! | AATTAATATTTTTCATAAAC+AGG | - | 10809:11364-11383 | MS.gene067520:intergenic | 10.0% |
| !!! | CAAACAATTGTAAATATTTT+TGG | + | 10809:11155-11174 | MS.gene067520:intron | 15.0% |
| !! | AAACAACAATGGAAAAATTA+TGG | + | 10809:13409-13428 | MS.gene067520:CDS | 20.0% |
| !! | ATTGTTTGAATACTGAATAA+TGG | - | 10809:11143-11162 | MS.gene067520:intergenic | 20.0% |
| !! | TGGTTGTACTATAATTTATA+AGG | + | 10809:11009-11028 | MS.gene067520:intron | 20.0% |
| !!! | AAATATTGTTGTTTCATAGA+AGG | - | 10809:11401-11420 | MS.gene067520:intergenic | 20.0% |
| !!! | AATATTGTTGTTTCATAGAA+GGG | - | 10809:11400-11419 | MS.gene067520:intergenic | 20.0% |
| !!! | ATTATTTCTTCAGATTTCTT+TGG | - | 10809:11251-11270 | MS.gene067520:intergenic | 20.0% |
| !!! | ATTGTTGTATTTTTCTTCTT+AGG | - | 10809:13527-13546 | MS.gene067520:intergenic | 20.0% |
| !!! | CTATGAAACAACAATATTTT+GGG | + | 10809:11402-11421 | MS.gene067520:intron | 20.0% |
| !!! | TCTATGAAACAACAATATTT+TGG | + | 10809:11401-11420 | MS.gene067520:intron | 20.0% |
| !!! | TTTTCTTATAAGTAGTGAAT+AGG | - | 10809:11308-11327 | MS.gene067520:intergenic | 20.0% |
| ! | AATTATATAGGGTCTAAATG+AGG | + | 10809:10955-10974 | MS.gene067520:intron | 25.0% |
| ! | AATTGCAAAGATGAAAAATG+AGG | + | 10809:12485-12504 | MS.gene067520:CDS | 25.0% |
| ! | ACAACAATGTTGAAGAAAAT+TGG | + | 10809:13539-13558 | MS.gene067520:CDS | 25.0% |
| ! | ATTATATAGGGTCTAAATGA+GGG | + | 10809:10956-10975 | MS.gene067520:intron | 25.0% |
| ! | CAAATAAAACTCCAAAAGAT+AGG | + | 10809:11739-11758 | MS.gene067520:CDS | 25.0% |
| ! | GAAATTACCAATAATCACAA+TGG | - | 10809:11840-11859 | MS.gene067520:intergenic | 25.0% |
| ! | GTTAGAGAAGAATAAAATCA+CGG | + | 10809:13148-13167 | MS.gene067520:CDS | 25.0% |
| ! | TCAATTCCATGAATACAAAT+AGG | - | 10809:11076-11095 | MS.gene067520:intergenic | 25.0% |
| ! | TCACTACTTATAAGAAAACT+AGG | + | 10809:11310-11329 | MS.gene067520:intron | 25.0% |
| ! | TTAAAATGTACCTCAGATAT+TGG | - | 10809:11792-11811 | MS.gene067520:intergenic | 25.0% |
| ! | TTACCACAATATGATTCATT+AGG | - | 10809:11279-11298 | MS.gene067520:intergenic | 25.0% |
| ! | TTACTGAAATATGACTTACA+AGG | - | 10809:11114-11133 | MS.gene067520:intergenic | 25.0% |
| !! | TAAGCATGTTGATTGAAATA+TGG | + | 10809:11589-11608 | MS.gene067520:intron | 25.0% |
| !! | TGTGATTATTGGTAATTTCA+TGG | + | 10809:11841-11860 | MS.gene067520:intron | 25.0% |
| !!! | ATATTTTTGGGATCTAATTG+AGG | + | 10809:11168-11187 | MS.gene067520:intron | 25.0% |
| !!! | CTTATTTTATTCAGTAGGTT+TGG | + | 10809:10989-11008 | MS.gene067520:intron | 25.0% |
| !!! | TTGCTCTTATTTTATTCAGT+AGG | + | 10809:10984-11003 | MS.gene067520:intron | 25.0% |
| AACAAATAGGGTACAAGAAT+TGG | + | 10809:12032-12051 | MS.gene067520:CDS | 30.0% | |
| AACTGAAAATGCAACTTGAA+AGG | + | 10809:12367-12386 | MS.gene067520:CDS | 30.0% | |
| AAGACAAGCTGAATTATATG+AGG | + | 10809:12947-12966 | MS.gene067520:CDS | 30.0% | |
| AATATGACTTACAAGGAGTT+CGG | - | 10809:11107-11126 | MS.gene067520:intergenic | 30.0% | |
| ACTGAAAATGCAACTTGAAA+GGG | + | 10809:12368-12387 | MS.gene067520:CDS | 30.0% | |
| AGAACTAAGGAAAATTTCTC+AGG | + | 10809:12248-12267 | MS.gene067520:CDS | 30.0% | |
| AGAGAACAATACACTTAAGA+TGG | + | 10809:13109-13128 | MS.gene067520:CDS | 30.0% | |
| ATCTACACAAGAAGAGTTAT+AGG | - | 10809:11454-11473 | MS.gene067520:intergenic | 30.0% | |
| ATTTGAAGGAGATTTCTTTC+GGG | - | 10809:11649-11668 | MS.gene067520:intergenic | 30.0% | |
| CATTTACACATATCACAATG+AGG | - | 10809:11538-11557 | MS.gene067520:intergenic | 30.0% | |
| GATTTGAAGGAGATTTCTTT+CGG | - | 10809:11650-11669 | MS.gene067520:intergenic | 30.0% | |
| GGAATAGATAACTAGATACT+TGG | + | 10809:11871-11890 | MS.gene067520:intron | 30.0% | |
| GGCTACAACAATTCTATTAT+TGG | + | 10809:13455-13474 | MS.gene067520:CDS | 30.0% | |
| GTCTTCAGTCGAATTATATA+GGG | + | 10809:10944-10963 | MS.gene067520:intron | 30.0% | |
| TAAGATGGAAATAAAGAGAG+AGG | + | 10809:13124-13143 | MS.gene067520:CDS | 30.0% | |
| TAGAGGCAATATATTCATGA+AGG | - | 10809:11911-11930 | MS.gene067520:intergenic | 30.0% | |
| TATATAATTCGACTGAAGAC+AGG | - | 10809:10944-10963 | MS.gene067520:intergenic | 30.0% | |
| TGCAAATTTCTTGAATAGAG+TGG | - | 10809:11478-11497 | MS.gene067520:intergenic | 30.0% | |
| TGTCCTAATGAATCATATTG+TGG | + | 10809:11273-11292 | MS.gene067520:intron | 30.0% | |
| TGTCTTCAGTCGAATTATAT+AGG | + | 10809:10943-10962 | MS.gene067520:intron | 30.0% | |
| TTTGAGCCTATTTGTATTCA+TGG | + | 10809:11067-11086 | MS.gene067520:intron | 30.0% | |
| ! | AGCTTTTATCTTCAATGACT+CGG | - | 10809:12118-12137 | MS.gene067520:intergenic | 30.0% |
| ! | ATGCTGCAAAAGTATGAAAT+AGG | - | 10809:10909-10928 | MS.gene067520:intergenic | 30.0% |
| ! | ATTTCTTCTGGAAACAACAA+TGG | + | 10809:13398-13417 | MS.gene067520:CDS | 30.0% |
| ! | CATGTTGATTGAAATATGGT+TGG | + | 10809:11593-11612 | MS.gene067520:intron | 30.0% |
| ! | CATTCTATTTAATGGACCAA+AGG | - | 10809:11205-11224 | MS.gene067520:intergenic | 30.0% |
| !! | CTTTAGAGTTAGAGAAATCA+AGG | + | 10809:12646-12665 | MS.gene067520:CDS | 30.0% |
| !! | GAAACAACAATATTTTGGGA+AGG | + | 10809:11406-11425 | MS.gene067520:intron | 30.0% |
| !! | GGATTGTCTTGTTTCTTTAT+TGG | + | 10809:11427-11446 | MS.gene067520:intron | 30.0% |
| !! | TTAGATTTTGCTATGCATAG+AGG | - | 10809:11928-11947 | MS.gene067520:intergenic | 30.0% |
| !! | TTTCTCTAACTCTAAAGCTA+AGG | - | 10809:12643-12662 | MS.gene067520:intergenic | 30.0% |
| !! | TTTGTGTTGACTTGACATTT+GGG | - | 10809:11767-11786 | MS.gene067520:intergenic | 30.0% |
| !!! | CTTTTGGAGTTTTATTTGCT+GGG | - | 10809:11737-11756 | MS.gene067520:intergenic | 30.0% |
| !!! | TCTTTTGGAGTTTTATTTGC+TGG | - | 10809:11738-11757 | MS.gene067520:intergenic | 30.0% |
| AACACAAAGTCCAATATCTG+AGG | + | 10809:11779-11798 | MS.gene067520:CDS | 35.0% | |
| AATAATCACAATGGCACCAA+AGG | - | 10809:11831-11850 | MS.gene067520:intergenic | 35.0% | |
| AATTCGCTCATCTTCAGAAT+TGG | - | 10809:12226-12245 | MS.gene067520:intergenic | 35.0% | |
| AGAAATCTCCTTCAAATCCT+CGG | + | 10809:11652-11671 | MS.gene067520:CDS | 35.0% | |
| AGAGGTAGACAAAAATGTCA+AGG | - | 10809:12002-12021 | MS.gene067520:intergenic | 35.0% | |
| ATGAGCGAATTCAAGAACTA+AGG | + | 10809:12235-12254 | MS.gene067520:CDS | 35.0% | |
| CTAGAAGAACGGAACAAATA+GGG | + | 10809:12020-12039 | MS.gene067520:intron | 35.0% | |
| GAAGAATAAAATCACGGATG+AGG | + | 10809:13154-13173 | MS.gene067520:CDS | 35.0% | |
| GAAGATAAAAGCTCAACATG+AGG | + | 10809:12125-12144 | MS.gene067520:CDS | 35.0% | |
| GGAAAAATTATGGAGAGAAC+TGG | + | 10809:13419-13438 | MS.gene067520:CDS | 35.0% | |
| GTGATTCAGATTCTCTACAA+TGG | - | 10809:12515-12534 | MS.gene067520:intergenic | 35.0% | |
| GTTCCTATAAGACTTACCTT+TGG | + | 10809:11812-11831 | MS.gene067520:intron | 35.0% | |
| TAGTACAACTCAAGTGCAAT+TGG | + | 10809:12551-12570 | MS.gene067520:CDS | 35.0% | |
| TATTTGTTCCGTTCTTCTAG+AGG | - | 10809:12020-12039 | MS.gene067520:intergenic | 35.0% | |
| TCATCAGTTTCTTCTGCATA+AGG | - | 10809:13497-13516 | MS.gene067520:intergenic | 35.0% | |
| TCATTTGCAAGATAGTGATG+TGG | + | 10809:13031-13050 | MS.gene067520:CDS | 35.0% | |
| TCTAGAAGAACGGAACAAAT+AGG | + | 10809:12019-12038 | MS.gene067520:intron | 35.0% | |
| TGAAAGTTCAGTCAGATCAA+TGG | + | 10809:13345-13364 | MS.gene067520:CDS | 35.0% | |
| TGGTAATTTCATGGATGCAT+TGG | + | 10809:11850-11869 | MS.gene067520:intron | 35.0% | |
| TTCTAATCTGCAATGTGCTT+TGG | - | 10809:12884-12903 | MS.gene067520:intergenic | 35.0% | |
| TTGTAGAGAATCTGAATCAC+AGG | + | 10809:12515-12534 | MS.gene067520:CDS | 35.0% | |
| TTTATCCATGTCAAGAGAGT+TGG | + | 10809:12170-12189 | MS.gene067520:CDS | 35.0% | |
| TTTCAGTTAAAGCTGAAGCA+GGG | + | 10809:12805-12824 | MS.gene067520:CDS | 35.0% | |
| TTTGAAGGAGATTTCTTTCG+GGG | - | 10809:11648-11667 | MS.gene067520:intergenic | 35.0% | |
| ! | AGCTTTAACTGAAACAAGCT+CGG | - | 10809:12799-12818 | MS.gene067520:intergenic | 35.0% |
| ! | CAAGTTGCATTTTCAGTTTC+TGG | - | 10809:12365-12384 | MS.gene067520:intergenic | 35.0% |
| ! | TGAGTTGAAGGCAAGATTAT+TGG | + | 10809:13055-13074 | MS.gene067520:CDS | 35.0% |
| ! | TTATTTGCTGGGTTTGAAGA+CGG | - | 10809:11726-11745 | MS.gene067520:intergenic | 35.0% |
| ! | TTTGTCTACCTCTAGAAGAA+CGG | + | 10809:12009-12028 | MS.gene067520:intron | 35.0% |
| !! | CTAACTCTAAAGCTAAGGAT+TGG | - | 10809:12638-12657 | MS.gene067520:intergenic | 35.0% |
| !! | CTTTGTGTTGACTTGACATT+TGG | - | 10809:11768-11787 | MS.gene067520:intergenic | 35.0% |
| !! | TGAAGAAAATTGGAGTGTTG+TGG | + | 10809:13549-13568 | MS.gene067520:CDS | 35.0% |
| !! | TTTGGTGCCATTGTGATTAT+TGG | + | 10809:11830-11849 | MS.gene067520:intron | 35.0% |
| AAGCCGATGTTGAAGAGTTA+AGG | + | 10809:12985-13004 | MS.gene067520:CDS | 40.0% | |
| AAGGTCTCAAGTAAACTCAC+TGG | + | 10809:12665-12684 | MS.gene067520:CDS | 40.0% | |
| AAGTTCAGTCAGATCAATGG+AGG | + | 10809:13348-13367 | MS.gene067520:CDS | 40.0% | |
| AATGATAGCACGTGTAACTG+AGG | + | 10809:13268-13287 | MS.gene067520:CDS | 40.0% | |
| ACTAGGCTTCTATGCATCAA+TGG | + | 10809:11327-11346 | MS.gene067520:intron | 40.0% | |
| AGAATCTGAATCACAGGCAT+TGG | + | 10809:12521-12540 | MS.gene067520:CDS | 40.0% | |
| AGCCGATGTTGAAGAGTTAA+GGG | + | 10809:12986-13005 | MS.gene067520:CDS | 40.0% | |
| AGGCTGAAGATGCAAAGAAT+CGG | + | 10809:12145-12164 | MS.gene067520:CDS | 40.0% | |
| AGGGCAGTTAAAATCTGCAT+TGG | + | 10809:12824-12843 | MS.gene067520:CDS | 40.0% | |
| AGTCCAGAAACAGCATTCAA+TGG | + | 10809:12305-12324 | MS.gene067520:CDS | 40.0% | |
| ATGCTGAGATTCAAGACTTG+AGG | + | 10809:12436-12455 | MS.gene067520:CDS | 40.0% | |
| ATTCGACTGAAGACAGGAAA+AGG | - | 10809:10938-10957 | MS.gene067520:intergenic | 40.0% | |
| ATTGGAAGTTGTAGAAAGCG+AGG | + | 10809:12755-12774 | MS.gene067520:CDS | 40.0% | |
| CAGACACAAAAAGCAAGGTA+AGG | + | 10809:10879-10898 | MS.gene067520:intron | 40.0% | |
| CAGTTACACGTGCTATCATT+CGG | - | 10809:13268-13287 | MS.gene067520:intergenic | 40.0% | |
| CTCGTTCTGATATCTTACCT+CGG | - | 10809:12856-12875 | MS.gene067520:intergenic | 40.0% | |
| CTTTCTACAACTTCCAATGC+AGG | - | 10809:12753-12772 | MS.gene067520:intergenic | 40.0% | |
| GTTTCAGTTAAAGCTGAAGC+AGG | + | 10809:12804-12823 | MS.gene067520:CDS | 40.0% | |
| TAGAAAGCGAGGAGATAAAC+CGG | + | 10809:12766-12785 | MS.gene067520:CDS | 40.0% | |
| TGAGATTCAAGACTTGAGGA+TGG | + | 10809:12440-12459 | MS.gene067520:CDS | 40.0% | |
| TGAGGTATGAATGCTACCTT+TGG | + | 10809:11186-11205 | MS.gene067520:intron | 40.0% | |
| TGCCCTTAACTCTTCAACAT+CGG | - | 10809:12991-13010 | MS.gene067520:intergenic | 40.0% | |
| TGGAGTTAGAGGCTGAATTA+AGG | + | 10809:13318-13337 | MS.gene067520:CDS | 40.0% | |
| ! | ACATTTGGGCTCCTATCTTT+TGG | - | 10809:11753-11772 | MS.gene067520:intergenic | 40.0% |
| ! | ACGCTTTTGCACCTTCTAAT+CGG | - | 10809:12605-12624 | MS.gene067520:intergenic | 40.0% |
| ! | AGAGTTAAGGGCACAATTGA+TGG | + | 10809:12998-13017 | MS.gene067520:CDS | 40.0% |
| ! | GCACCAAAGGTAAGTCTTAT+AGG | - | 10809:11818-11837 | MS.gene067520:intergenic | 40.0% |
| !! | AGTCCATTGAATGCTGTTTC+TGG | - | 10809:12311-12330 | MS.gene067520:intergenic | 40.0% |
| ACGACTGGAGAACACGAAAT+CGG | + | 10809:12914-12933 | MS.gene067520:CDS | 45.0% | |
| ACTTGTGAGCAAACTTCAGG+AGG | + | 10809:12692-12711 | MS.gene067520:CDS | 45.0% | |
| AGAATGGCAGTCTGAACTAG+AGG | + | 10809:12281-12300 | MS.gene067520:CDS | 45.0% | |
| ATCCATGTCAAGAGAGTTGG+AGG | + | 10809:12173-12192 | MS.gene067520:CDS | 45.0% | |
| ATTGTCAATCCGGGTAGCTT+CGG | - | 10809:12403-12422 | MS.gene067520:intergenic | 45.0% | |
| CTGACTCAGCATTGTCAATC+CGG | - | 10809:12413-12432 | MS.gene067520:intergenic | 45.0% | |
| GAGCAAACTTCAGGAGGATT+TGG | + | 10809:12698-12717 | MS.gene067520:CDS | 45.0% | |
| GCTGCTGCTATGATTTCTTC+TGG | + | 10809:13386-13405 | MS.gene067520:CDS | 45.0% | |
| GGAACTTGTGAGCAAACTTC+AGG | + | 10809:12689-12708 | MS.gene067520:CDS | 45.0% | |
| GGAAGCTGCAAATAAGACAG+TGG | + | 10809:12572-12591 | MS.gene067520:CDS | 45.0% | |
| GGGTACAAGAATTGGAGTCT+CGG | + | 10809:12040-12059 | MS.gene067520:CDS | 45.0% | |
| GTCTCAAGTAAACTCACTGG+AGG | + | 10809:12668-12687 | MS.gene067520:CDS | 45.0% | |
| TGACTCAGCATTGTCAATCC+GGG | - | 10809:12412-12431 | MS.gene067520:intergenic | 45.0% | |
| TTCCTCCAACTCTCTTGACA+TGG | - | 10809:12178-12197 | MS.gene067520:intergenic | 45.0% | |
| ! | AGAACTGGTTCACTTGACAG+TGG | + | 10809:13434-13453 | MS.gene067520:CDS | 45.0% |
| ! | GAGGATTTGGTCAGTAGAGT+TGG | + | 10809:12711-12730 | MS.gene067520:CDS | 45.0% |
| ! | TAGTGATGTGGCTGAGTTGA+AGG | + | 10809:13043-13062 | MS.gene067520:CDS | 45.0% |
| !! | TAGAAGTGCCTTTGAACGAC+TGG | + | 10809:12899-12918 | MS.gene067520:CDS | 45.0% |
| ACTTCCAATGCAGGTAAGCG+AGG | - | 10809:12744-12763 | MS.gene067520:intergenic | 50.0% | |
| ATCTCCTCGCTTACCTGCAT+TGG | + | 10809:12737-12756 | MS.gene067520:CDS | 50.0% | |
| CAGACTGCCATTCTCGATCT+CGG | - | 10809:12275-12294 | MS.gene067520:intergenic | 50.0% | |
| CGTGTTCTCCAGTCGTTCAA+AGG | - | 10809:12910-12929 | MS.gene067520:intergenic | 50.0% | |
| GAGAGTTGGAGGAATCACAG+CGG | + | 10809:12184-12203 | MS.gene067520:CDS | 50.0% | |
| GTGAGCAGAAATGGTGCATC+AGG | + | 10809:11618-11637 | MS.gene067520:intron | 50.0% | |
| GTGGAAACGCTCCGATTAGA+AGG | + | 10809:12591-12610 | MS.gene067520:CDS | 50.0% | |
| TGAGGAGTTAGATGCTGCAC+AGG | + | 10809:13286-13305 | MS.gene067520:CDS | 50.0% | |
| ! | GGCGTCGAATTTGGAGTTAG+AGG | + | 10809:13307-13326 | MS.gene067520:CDS | 50.0% |
| ! | TGGTTGGCTGTGAGCAGAAA+TGG | + | 10809:11609-11628 | MS.gene067520:intron | 50.0% |
| !! | AAACAAGCTCGGCTTTGAGC+CGG | - | 10809:12788-12807 | MS.gene067520:intergenic | 50.0% |
| ATCTGCATTGGATGCTGCCG+AGG | + | 10809:12836-12855 | MS.gene067520:CDS | 55.0% | |
| CACGTGAATCCGAAGCTACC+CGG | + | 10809:12391-12410 | MS.gene067520:CDS | 55.0% | |
| CGAGCAGTCCGAGGATTTGA+AGG | - | 10809:11663-11682 | MS.gene067520:intergenic | 55.0% | |
| CTCAGGACCGAGATCGAGAA+TGG | + | 10809:12265-12284 | MS.gene067520:CDS | 55.0% | |
| GCTCGCAAGACGAAGTCATC+AGG | + | 10809:11678-11697 | MS.gene067520:CDS | 55.0% | |
| GGAATCACAGCGGCAACTTC+TGG | + | 10809:12194-12213 | MS.gene067520:CDS | 55.0% | |
| TGGGTTTGAAGACGGCGAAG+CGG | - | 10809:11718-11737 | MS.gene067520:intergenic | 55.0% | |
| TGTCAAAGCCTCTCGCTCTG+CGG | - | 10809:13207-13226 | MS.gene067520:intergenic | 55.0% | |
| !! | TGCTGCACAGGCGTCGAATT+TGG | + | 10809:13298-13317 | MS.gene067520:CDS | 55.0% |
| TGCTTCCGCTGAGGCAGCAA+GGG | + | 10809:13181-13200 | MS.gene067520:CDS | 60.0% | |
| TTCGTCTTGCGAGCAGTCCG+AGG | - | 10809:11672-11691 | MS.gene067520:intergenic | 60.0% | |
| TTGCTTCCGCTGAGGCAGCA+AGG | + | 10809:13180-13199 | MS.gene067520:CDS | 60.0% | |
| ! | TGAGGCTGTTGCTTCCGCTG+AGG | + | 10809:13172-13191 | MS.gene067520:CDS | 60.0% |
| AGCAAGGGCCGCAGAGCGAG+AGG | + | 10809:13196-13215 | MS.gene067520:CDS | 70.0% | |
| TGCGGCCCTTGCTGCCTCAG+CGG | - | 10809:13189-13208 | MS.gene067520:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 10809 | gene | 10876 | 13589 | 10876 | ID=MS.gene067520 |
| 10809 | mRNA | 10876 | 13589 | 10876 | ID=MS.gene067520.t1;Parent=MS.gene067520 |
| 10809 | exon | 10876 | 10895 | 10876 | ID=MS.gene067520.t1.exon1;Parent=MS.gene067520.t1 |
| 10809 | CDS | 10876 | 10895 | 10876 | ID=cds.MS.gene067520.t1;Parent=MS.gene067520.t1 |
| 10809 | exon | 11626 | 11800 | 11626 | ID=MS.gene067520.t1.exon2;Parent=MS.gene067520.t1 |
| 10809 | CDS | 11626 | 11800 | 11626 | ID=cds.MS.gene067520.t1;Parent=MS.gene067520.t1 |
| 10809 | exon | 12024 | 13589 | 12024 | ID=MS.gene067520.t1.exon3;Parent=MS.gene067520.t1 |
| 10809 | CDS | 12024 | 13589 | 12024 | ID=cds.MS.gene067520.t1;Parent=MS.gene067520.t1 |
| Gene Sequence |
| Protein sequence |
