AlfalfaGEDB | MS.gene31930

M. sativa cultivar XinJiangDaYe / MS.gene31930

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF01535.23 PF13041.9 PF14432.9 PF20430.1 PF20431.1

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31930.t1	XP_013457040.1	94.1	591	35	0	1	591	1	591	2.40E-260	907.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31930.t1	P93011	51.7	573	274	2	21	591	12	583	1.1e-147	525.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31930.t1	A0A072UNW1	94.1	591	35	0	1	591	1	591	1.8e-260	907.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene029871	MS.gene31930	PPI
MS.gene073783	MS.gene31930	PPI
MS.gene23912	MS.gene31930	PPI
MS.gene31930	MS.gene20038	PPI
MS.gene31930	MS.gene037356	PPI
MS.gene31930	MS.gene029217	PPI
MS.gene31930	MS.gene09808	PPI
MS.gene31930	MS.gene029219	PPI
MS.gene31930	MS.gene007461	PPI
MS.gene31930	MS.gene067520	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31930.t1	MTR_4g088840	95.431	591	27	0	1	591	1	591	0.0	1138
MS.gene31930.t1	MTR_1g012380	42.179	569	316	7	34	591	34	600	3.00e-157	464
MS.gene31930.t1	MTR_1g012380	26.923	286	194	6	127	401	26	307	3.37e-26	113
MS.gene31930.t1	MTR_2g018870	40.179	560	331	3	34	591	56	613	6.50e-156	461
MS.gene31930.t1	MTR_2g018870	27.778	270	193	2	30	297	155	424	3.57e-28	119
MS.gene31930.t1	MTR_2g101710	41.889	561	323	2	31	591	63	620	6.00e-155	458
MS.gene31930.t1	MTR_2g101710	26.415	424	294	9	109	522	39	454	2.35e-42	161
MS.gene31930.t1	MTR_4g130500	41.296	540	315	2	52	591	246	783	2.66e-154	462
MS.gene31930.t1	MTR_4g130500	28.868	433	301	5	21	451	114	541	6.41e-52	191
MS.gene31930.t1	MTR_4g130500	29.759	457	280	10	29	451	26	475	3.45e-47	177

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31930.t1	AT2G33760	61.938	578	217	2	16	591	7	583	0.0	775
MS.gene31930.t1	AT4G37380	42.321	560	286	4	64	591	78	632	4.21e-168	493
MS.gene31930.t1	AT4G21065	40.917	567	328	4	31	591	30	595	1.02e-161	475
MS.gene31930.t1	AT2G01510	40.855	585	338	5	11	591	4	584	7.71e-155	457
MS.gene31930.t1	AT2G01510	40.855	585	338	5	11	591	4	584	7.71e-155	457
MS.gene31930.t1	AT4G30700	39.394	561	335	3	31	591	237	792	2.96e-154	462
MS.gene31930.t1	AT4G30700	31.731	312	200	4	31	335	33	338	2.45e-40	157
MS.gene31930.t1	AT4G30700	28.169	284	202	2	15	296	319	602	2.48e-32	133
MS.gene31930.t1	AT4G30700	24.123	228	169	2	115	341	19	243	2.07e-16	83.6
MS.gene31930.t1	AT4G21065	43.844	463	259	1	129	591	1	462	7.86e-151	442

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Find 145 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGAAAGGAATCGGGGT+CGG	0.640637	4.1:-20989600	None:intergenic
AAAGGAATCGGGGTCGGTGA+CGG	0.535045	4.1:-20989594	None:intergenic
AACGGTTCCGAGTTTAAGAG+CGG	0.643690	4.1:-20989759	None:intergenic
AACTCGTGCATAGCTGATTC+AGG	0.440781	4.1:-20990880	None:intergenic
AAGACAAAGATCAAAATCTG+CGG	0.681392	4.1:+20989406	MS.gene31930:CDS
AAGAGAGGGAGTATGCCCTC+AGG	0.578162	4.1:+20990911	MS.gene31930:CDS
AATCGGGGTCGGTGACGGAG+AGG	0.610371	4.1:-20989589	None:intergenic
AATGGAAGAATACAAAGAGC+GGG	0.555807	4.1:+20989370	None:intergenic
AATTAAAGAGAAAGGAATCG+GGG	0.724364	4.1:-20989604	None:intergenic
ACAATTGCAGCTTGTACAAA+TGG	0.443897	4.1:-20989821	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGACAAAGATCAAAATCTG+CGG	+	chr4.1:20989406-20989425	MS.gene31930:CDS	30.0%
AATTAAAGAGAAAGGAATCG+GGG	-	chr4.1:20989607-20989626	None:intergenic	30.0%
ACAAAATGAAAAAAGCAAGG+GGG	+	chr4.1:20990290-20990309	MS.gene31930:CDS	30.0%
AGAAATGTAATGATCCAAAG+AGG	+	chr4.1:20990703-20990722	MS.gene31930:CDS	30.0%
ATGCATAAGAATTACGATCT+TGG	+	chr4.1:20990568-20990587	MS.gene31930:CDS	30.0%
GAAAACATGAGAATGAAGAA+CGG	-	chr4.1:20989780-20989799	None:intergenic	30.0%
GAAAGCAATACATAATTGCT+AGG	-	chr4.1:20990637-20990656	None:intergenic	30.0%
GAATTAAAGAGAAAGGAATC+GGG	-	chr4.1:20989608-20989627	None:intergenic	30.0%
GCTTTCTAATATGTATGCAT+TGG	+	chr4.1:20990651-20990670	MS.gene31930:CDS	30.0%
GGAATTAAAGAGAAAGGAAT+CGG	-	chr4.1:20989609-20989628	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	20989371	20991146	20989371	ID=MS.gene31930
chr4.1	mRNA	20989371	20991146	20989371	ID=MS.gene31930.t1;Parent=MS.gene31930
chr4.1	exon	20989371	20991146	20989371	ID=MS.gene31930.t1.exon1;Parent=MS.gene31930.t1
chr4.1	CDS	20989371	20991146	20989371	ID=cds.MS.gene31930.t1;Parent=MS.gene31930.t1

Gene Sequence

>MS.gene31930

ATGGAAGAATACAAAGAGCGGGAAGAGCAAAAACAAAGACAAAGATCAAAATCTGCGGAATACGAAGCAGTGATACGTGCTGGCCCACACATTCGACCTCTCCAACAAGCTCACGCTCATCTCATTGTCTCCGGTCGTCACCGTAGTCGTGCCCTCCTCACCAAACTCCTCACTCTCTCTTGCGCCGCCGGTTCCATCGCCTACACCCGCCGTCTCTTCCTCTCCGTCACCGACCCCGATTCCTTTCTCTTTAATTCCCTCATCAAAGCCTCTTCCCAGCACGGTTTCTCCCTCGACACCGTTCTTTTCTACCGTCGCATGCTTTCTTCCCCTCACAAACCTTCTTCCTACACTTTCACTTCCGTTTTCAAAGCATGTGCTCATCTTTCCGCTCTTAAACTCGGAACCGTTCTTCATTCTCATGTTTTCGTTTCTGGGTTTGGTTCTAATCCATTTGTACAAGCTGCAATTGTTGCTTTTTATGCTAAATCAAGTGCATTGTGTGTTGCACGTAAGGTGTTTGATAAAATGCCTCAACGGAGTGTTGTTGCTTGGAACACGATGATTTCGGGTTATGAACAAAACGGCCTTGTGAATGAAGCGATGGCACTGTTTAGGAAGATGAATGAATTCGGGGTTCGTCCGGACTCTGCAACTTTTGTTTCTGTGTCATCGGCTTGTTCTCAGATTGGGTCTCTTGAATTGGGGTGTTGGGTGTATGATAGTATTGTTAGTAATGGGATTCCTGTCAATGTGATTCTTGGTACGTCATTGATAAACATGTTTTCGAGGTGTGGTGATGTAAGAAGAGCGCGTGCAGTTTTTGATTCGATTAGTGAAGGGAATGTTATAGCTTGGACGGCTATGATATCTGGGTATGGTATGCATGGTTATGGTGTTGAAGCAATGGAGCTTTTCTACAAAATGAAAAAAGCAAGGGGGCTTGCTCCTAATACTGTTACTTTTGTCGCTGTTTTATCTGCATGTGCTCATGCAGGGCTAATACGTGAAGGGAGGCAAGTTTTTGCAAGCATGAGACAAGAGTATGGCGTGGTTCCTGGACTGGAGCATCATGTTTGTATGGTTGATATGCTTGGGAAGGCTGGGTTGCTAACTGAAGCATATCAATTCATTAAGGAACTTAGTCTTGTGGAGCATGTTCCGGCAGTGTGGACTGCAATGCTTGGTGCTTGCAAGATGCATAAGAATTACGATCTTGGGGTGCAAGCTGCTCAGCATCTCATTTCCTTAGAGCCAGAGAATCCTAGCAATTATGTATTGCTTTCTAATATGTATGCATTGGCTGGAAGAATGGATAGAGTGGAATCTGTTAGAAATGTAATGATCCAAAGAGGTATTAAAAAGCAAGCGGGTTATAGCTCTATCGATGTCAACAATAAAACTTATCTTTTTAGAATGGGTGACAAGGCTCATCCTGAGACCAATGAGATTTATCAGTATTTGGACGAGCTGATGTGGAGGTGCAAGGAAGCGGGTTATGCACCGATTCCTGAATCAGCTATGCACGAGTTGGAAGAAGAAGAGAGGGAGTATGCCCTCAGGTACCATAGTGAGAAGCTTGCAGTAGCATTTGGGCTGATGAAAACTAGTCATGGAACGGCGCTCAAGATTGTCAAGAACCTTAGGATATGTGAAGACTGTCATTCAGCAATTAAGTTCATCTCTGTTGTGACAAATAGAGAGATAATTATCCGTGATAAGCTTCGTTTTCATCATTTCAGAGAAGGCTCGTGTTCTTGTTTAGATTATTGGTGA

Protein sequence

>MS.gene31930.t1

MEEYKEREEQKQRQRSKSAEYEAVIRAGPHIRPLQQAHAHLIVSGRHRSRALLTKLLTLSCAAGSIAYTRRLFLSVTDPDSFLFNSLIKASSQHGFSLDTVLFYRRMLSSPHKPSSYTFTSVFKACAHLSALKLGTVLHSHVFVSGFGSNPFVQAAIVAFYAKSSALCVARKVFDKMPQRSVVAWNTMISGYEQNGLVNEAMALFRKMNEFGVRPDSATFVSVSSACSQIGSLELGCWVYDSIVSNGIPVNVILGTSLINMFSRCGDVRRARAVFDSISEGNVIAWTAMISGYGMHGYGVEAMELFYKMKKARGLAPNTVTFVAVLSACAHAGLIREGRQVFASMRQEYGVVPGLEHHVCMVDMLGKAGLLTEAYQFIKELSLVEHVPAVWTAMLGACKMHKNYDLGVQAAQHLISLEPENPSNYVLLSNMYALAGRMDRVESVRNVMIQRGIKKQAGYSSIDVNNKTYLFRMGDKAHPETNEIYQYLDELMWRCKEAGYAPIPESAMHELEEEEREYALRYHSEKLAVAFGLMKTSHGTALKIVKNLRICEDCHSAIKFISVVTNREIIIRDKLRFHHFREGSCSCLDYW