AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene76250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76250.t1 MTR_1g111740 97.089 584 15 1 1 584 1 582 0.0 1139
MS.gene76250.t1 MTR_4g099270 51.763 539 243 5 34 565 6 534 1.07e-177 514
MS.gene76250.t1 MTR_8g089360 42.539 583 313 5 6 583 16 581 1.83e-155 458
MS.gene76250.t1 MTR_8g089320 42.234 573 314 4 6 573 28 588 1.90e-155 459
MS.gene76250.t1 MTR_8g089360 42.539 583 313 5 6 583 33 598 3.39e-155 458
MS.gene76250.t1 MTR_2g035430 41.594 577 319 5 6 579 28 589 2.15e-153 453
MS.gene76250.t1 MTR_1g030660 41.034 580 310 6 6 579 23 576 5.87e-151 447
MS.gene76250.t1 MTR_4g099270 53.747 387 172 2 9 394 2 382 3.28e-138 407
MS.gene76250.t1 MTR_4g099270 50.231 432 198 5 141 565 1 422 1.23e-137 407
MS.gene76250.t1 MTR_8g461380 39.894 564 321 4 7 567 36 584 2.47e-134 404
MS.gene76250.t1 MTR_4g099270 51.768 311 143 2 9 318 2 306 4.52e-100 306
MS.gene76250.t1 MTR_8g089340 38.116 467 265 6 128 582 2 456 1.18e-93 295
MS.gene76250.t1 MTR_7g086510 37.037 405 239 4 37 434 25 420 9.01e-76 253
MS.gene76250.t1 MTR_7g086610 34.321 405 256 3 34 434 16 414 3.24e-74 248
MS.gene76250.t1 MTR_6g027630 33.976 415 263 4 24 434 18 425 7.03e-73 244
MS.gene76250.t1 MTR_6g027630 33.976 415 263 4 24 434 18 425 1.52e-72 244
MS.gene76250.t1 MTR_6g027680 33.333 417 261 4 29 434 18 428 2.01e-72 243
MS.gene76250.t1 MTR_6g027650 33.333 423 261 6 23 434 6 418 1.67e-70 239
MS.gene76250.t1 MTR_6g027660 32.701 422 268 4 24 441 24 433 2.79e-70 238
MS.gene76250.t1 MTR_7g007850 32.110 545 314 10 43 561 42 556 1.95e-67 229
MS.gene76250.t1 MTR_7g007850 35.309 405 242 7 43 440 42 433 1.61e-61 211
MS.gene76250.t1 MTR_7g007850 35.309 405 242 7 43 440 42 433 2.82e-61 212
MS.gene76250.t1 MTR_7g007850 35.309 405 242 7 43 440 42 433 8.82e-61 212
MS.gene76250.t1 MTR_6g027630 33.043 345 221 3 94 434 2 340 1.44e-56 199
MS.gene76250.t1 MTR_6g034535 36.596 235 139 4 346 576 87 315 4.67e-41 151
MS.gene76250.t1 MTR_8g089342 54.054 111 51 0 6 116 29 139 3.96e-35 129
MS.gene76250.t1 MTR_6g027670 33.333 159 106 0 276 434 1 159 2.31e-24 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76250.t1 AT3G10600 73.473 573 147 2 6 577 12 580 0.0 840
MS.gene76250.t1 AT5G04770 73.592 568 149 1 8 574 15 582 0.0 835
MS.gene76250.t1 AT3G10600 72.374 438 116 2 141 577 1 434 0.0 649
MS.gene76250.t1 AT5G04770 73.103 435 116 1 141 574 1 435 0.0 627
MS.gene76250.t1 AT5G04770 76.744 387 89 1 8 393 15 401 0.0 591
MS.gene76250.t1 AT4G21120 44.288 569 303 4 6 572 26 582 6.60e-170 496
MS.gene76250.t1 AT2G34960 42.806 556 295 4 6 554 20 559 3.24e-145 431
MS.gene76250.t1 AT1G17120 41.697 554 301 4 7 554 38 575 6.67e-134 403
MS.gene76250.t1 AT4G21120 41.084 443 247 4 132 572 2 432 2.68e-113 345
MS.gene76250.t1 AT3G03720 35.385 390 242 3 49 434 23 406 5.03e-79 261
MS.gene76250.t1 AT5G36940 30.517 580 334 9 27 547 10 579 1.43e-78 260
MS.gene76250.t1 AT1G58030 34.568 405 248 5 47 444 37 431 8.64e-73 245
MS.gene76250.t1 AT1G05940 30.057 529 336 8 37 547 35 547 6.05e-66 225
MS.gene76250.t1 AT1G05940 33.002 403 253 4 37 432 35 427 1.83e-62 214
MS.gene76250.t1 AT1G05940 33.002 403 253 4 37 432 35 427 4.06e-62 214
MS.gene76250.t1 AT1G05940 27.626 438 285 6 127 547 7 429 6.78e-44 162

Find 160 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATCATGTTCACCCTTATT+TGG 0.151182 1.1:-78894723 MS.gene76250:CDS
TCCCCATCCGTCGGATTTAA+AGG 0.223739 1.1:+78896421 None:intergenic
CACCATTCTTTATTGTCTTA+TGG 0.240699 1.1:-78896599 MS.gene76250:CDS
AAGCTAGGAAGCCAGAATTT+TGG 0.247903 1.1:-78894603 MS.gene76250:CDS
TTGGTACACATTTCCAAATA+AGG 0.271960 1.1:+78894710 None:intergenic
CATGCTTCTTCCTTACGATA+TGG 0.316039 1.1:-78896563 MS.gene76250:intron
TTGACAGGAGTGGATGTCTT+TGG 0.316766 1.1:+78896260 None:intergenic
CTCCTCGATCTTGTGTCAAT+TGG 0.334674 1.1:-78894862 MS.gene76250:CDS
ATAGCATTTGTGATAGTGAT+AGG 0.343471 1.1:-78896835 MS.gene76250:CDS
AGTGGTACACCCCAAAATTC+TGG 0.343949 1.1:+78894592 None:intergenic
GTTCTATCCTACGCCATTGC+TGG 0.344585 1.1:-78897496 MS.gene76250:CDS
GGGCCATCCTATGTTAGATT+TGG 0.346447 1.1:-78894508 MS.gene76250:CDS
TCGATTTGGTTAAACCCTTT+CGG 0.357707 1.1:+78897232 None:intergenic
TGATGTCAATATTCCAAAAC+TGG 0.360124 1.1:+78896370 None:intergenic
GCTGCTGAAAACGGTGCTTC+AGG 0.360568 1.1:+78896443 None:intergenic
CGACAGCAACCAAGTCGATT+TGG 0.363725 1.1:+78897218 None:intergenic
GAATTTGCGGCGTTTATAAC+CGG 0.365665 1.1:-78897376 MS.gene76250:CDS
AACAATGGCGGAAGAGGTTA+AGG 0.377344 1.1:-78896671 MS.gene76250:CDS
TGGTTTGACTTAGTCGGCTT+TGG 0.390645 1.1:-78897595 MS.gene76250:CDS
TCTACTACACTTTGAAACTT+TGG 0.394600 1.1:+78894350 None:intergenic
TTGGTGTATCTTCTGCTAAA+TGG 0.396688 1.1:-78897276 MS.gene76250:CDS
AGCTACCTCCGTGTCACATT+CGG 0.398623 1.1:-78897400 MS.gene76250:CDS
GATATTCCTATAGGTGTCTC+TGG 0.404482 1.1:-78896637 MS.gene76250:CDS
TGGTACACATTTCCAAATAA+GGG 0.409219 1.1:+78894711 None:intergenic
CGACGGCTTGGAGATAGTTT+CGG 0.409977 1.1:+78897728 None:intergenic
TGACAGGAGTGGATGTCTTT+GGG 0.415776 1.1:+78896261 None:intergenic
GATGGATTCTCCGGGTTAGC+TGG 0.426077 1.1:+78896778 None:intergenic
GGGGCTGCTGGTGTGTTTAA+CGG 0.431190 1.1:-78896739 MS.gene76250:CDS
GATAGTTGCTATGTTGGGTC+AGG 0.436181 1.1:-78896345 MS.gene76250:CDS
GACTTAGTCGGCTTTGGCAT+CGG 0.437178 1.1:-78897589 MS.gene76250:CDS
GCCGTTGCTAGAAGTTTCAC+TGG 0.443199 1.1:-78897316 MS.gene76250:CDS
ATTTGGAAATGTGTACCAAC+AGG 0.461426 1.1:-78894706 MS.gene76250:CDS
TTAAACCCTTTCGGAAAAGA+AGG 0.461748 1.1:+78897241 None:intergenic
GGATGGGCGTCTAGAGTGAT+AGG 0.462735 1.1:-78896401 MS.gene76250:CDS
ATCGGCGGGATGGTCGGCGC+TGG 0.465652 1.1:-78897571 MS.gene76250:CDS
GTTCTAATGTGGTCCCTGCT+TGG 0.465997 1.1:-78896298 MS.gene76250:CDS
TCACAGTCGTTATCTGCTAC+AGG 0.466187 1.1:-78897180 MS.gene76250:intron
TTTGGCATCGGCGGGATGGT+CGG 0.469036 1.1:-78897577 MS.gene76250:CDS
GCCGTTGATATGCCGGTCGC+CGG 0.470599 1.1:-78897433 MS.gene76250:CDS
TGTCACATTCGGTGAATTTG+CGG 0.471941 1.1:-78897389 MS.gene76250:CDS
GATTTAAAGGCTGCTGAAAA+CGG 0.476228 1.1:+78896434 None:intergenic
GCTCGTTATATGTGTGTCAT+TGG 0.479966 1.1:-78896323 MS.gene76250:CDS
GTCAATTTCAGGGATCTTCA+CGG 0.482089 1.1:-78894917 MS.gene76250:intron
CTCCGTTGGTTTGACTTAGT+CGG 0.484691 1.1:-78897601 MS.gene76250:CDS
ATCATTGATAGTTGCTATGT+TGG 0.484832 1.1:-78896351 MS.gene76250:CDS
GTGGTGAATATGATATTGAC+GGG 0.485352 1.1:-78896874 MS.gene76250:CDS
ATTGAAATTGCTGGTATCCA+TGG 0.486937 1.1:+78894565 None:intergenic
AGAAAAGCAGAGGCGTTGAC+AGG 0.487531 1.1:+78896245 None:intergenic
GCTGGAGTCTTCGTCACCAC+TGG 0.489218 1.1:-78897553 MS.gene76250:CDS
GCTGTTTATTTAAGCTACAT+TGG 0.489580 1.1:-78896709 MS.gene76250:CDS
TCATTGATAGTTGCTATGTT+GGG 0.491697 1.1:-78896350 MS.gene76250:CDS
ACACTTTGAAACTTTGGTCC+AGG 0.496558 1.1:+78894356 None:intergenic
AGGGAGTGTTAGCGACGGCT+TGG 0.498574 1.1:+78897716 None:intergenic
GCTGAAGGAGATGGTTCTCT+TGG 0.500020 1.1:-78894424 MS.gene76250:CDS
ACAGATCCAGAGACACCTAT+AGG 0.501870 1.1:+78896631 None:intergenic
CCAAATAAGGGTGAACATGA+TGG 0.510084 1.1:+78894723 None:intergenic
CGGCGGGGCCAGCGTGAACA+CGG 0.512818 1.1:+78897521 None:intergenic
TGTTTCAACAATGGCGGAAG+AGG 0.512880 1.1:-78896677 MS.gene76250:CDS
GCGTAGGATAGAACAACGGC+GGG 0.513150 1.1:+78897505 None:intergenic
TATAGACGTTATGTGGTGGC+AGG 0.514317 1.1:-78894799 MS.gene76250:CDS
GCCTTTAAATCCGACGGATG+GGG 0.514364 1.1:-78896422 MS.gene76250:CDS
ATTCTGGCTTCCTAGCTTGA+GGG 0.516360 1.1:+78894608 None:intergenic
GGTTCTCTTGGTCAAAAGAA+TGG 0.516382 1.1:-78894412 MS.gene76250:CDS
TGAGTTTGCCGTTGATATGC+CGG 0.516984 1.1:-78897440 MS.gene76250:CDS
TAGTCGGCTTTGGCATCGGC+GGG 0.518058 1.1:-78897585 MS.gene76250:CDS
AGCCTTTAAATCCGACGGAT+GGG 0.521965 1.1:-78896423 MS.gene76250:CDS
GCTGGTATCCATGGCATAAG+TGG 0.525739 1.1:+78894574 None:intergenic
TGCCATAAGACAATAAAGAA+TGG 0.526475 1.1:+78896597 None:intergenic
AAATGAGCCGCGTTCGAGCT+AGG 0.526955 1.1:-78897648 MS.gene76250:CDS
CTAAAAGCACCACCGGCGAC+CGG 0.528047 1.1:+78897421 None:intergenic
AGAAAAGACACTGTTGGCCA+TGG 0.528954 1.1:+78894766 None:intergenic
GTCAAAAGAAAGTGTGGACC+TGG 0.530721 1.1:-78894374 MS.gene76250:CDS
GGTCCCTGCTTGGTTTGCTA+AGG 0.530992 1.1:-78896288 MS.gene76250:CDS
ATTTCACTGTCCCTCAAGCT+AGG 0.532498 1.1:-78894618 MS.gene76250:CDS
AGCCGCGTTCGAGCTAGGTC+CGG 0.533259 1.1:-78897643 MS.gene76250:CDS
CGGCTTTGGCATCGGCGGGA+TGG 0.534959 1.1:-78897581 MS.gene76250:CDS
AATTCTGGCTTCCTAGCTTG+AGG 0.536324 1.1:+78894607 None:intergenic
GCTCATTTCTTCGTAAGAAG+TGG 0.536802 1.1:+78897663 None:intergenic
AAAGACTCCAAATCTAACAT+AGG 0.536990 1.1:+78894501 None:intergenic
AGCTTTGATGCTGAAGGAGA+TGG 0.537361 1.1:-78894433 MS.gene76250:CDS
CAGCGTGAACACGGCTAGCG+TGG 0.537709 1.1:+78897530 None:intergenic
GGCAAACTCAGTGTAACAAA+AGG 0.543038 1.1:+78897453 None:intergenic
ATCCATGATGAGATTTGCAC+CGG 0.544589 1.1:+78897357 None:intergenic
TGGACCTTAGCAAACCAAGC+AGG 0.546319 1.1:+78896284 None:intergenic
CCTATAGGAATATCTTTCAC+AGG 0.547006 1.1:+78896646 None:intergenic
CCAACAGGAGTAGCAAAAGC+AGG 0.547126 1.1:-78894691 MS.gene76250:CDS
TAAATCCGACGGATGGGGAT+GGG 0.548572 1.1:-78896417 MS.gene76250:CDS
CACGCTAGCCGTGTTCACGC+TGG 0.553035 1.1:-78897529 MS.gene76250:CDS
AGTGGTGAATATGATATTGA+CGG 0.558637 1.1:-78896875 MS.gene76250:CDS
GCCACGACGAGCGAAGCGAG+AGG 0.558835 1.1:+78897696 None:intergenic
CCTGTGAAAGATATTCCTAT+AGG 0.559643 1.1:-78896646 MS.gene76250:CDS
GGGGTGTACCACTTATGCCA+TGG 0.560946 1.1:-78894582 MS.gene76250:CDS
GCGTCTAGAGTGATAGGAGT+GGG 0.562933 1.1:-78896395 MS.gene76250:CDS
CCACGACGAGCGAAGCGAGA+GGG 0.564904 1.1:+78897697 None:intergenic
CAGCCTTTAAATCCGACGGA+TGG 0.565873 1.1:-78896424 MS.gene76250:CDS
ATAGTTTCGGAGGCTCGAAA+AGG 0.567837 1.1:+78897741 None:intergenic
AACCGGTGCAAATCTCATCA+TGG 0.569909 1.1:-78897359 MS.gene76250:CDS
TTAGTCGGCTTTGGCATCGG+CGG 0.571900 1.1:-78897586 MS.gene76250:CDS
TTAAATCCGACGGATGGGGA+TGG 0.573808 1.1:-78896418 MS.gene76250:CDS
GGTGAACATGATGGAAGTGA+AGG 0.574843 1.1:+78894732 None:intergenic
GCGCACGCAATGACAAGCCA+TGG 0.574924 1.1:-78897769 None:intergenic
ACCGGCGACCGGCATATCAA+CGG 0.575460 1.1:+78897432 None:intergenic
ACTCCAAATCTAACATAGGA+TGG 0.575981 1.1:+78894505 None:intergenic
AGCAGAGGCGTTGACAGGAG+TGG 0.576856 1.1:+78896250 None:intergenic
AGGGTTTAACCAAATCGACT+TGG 0.576967 1.1:-78897227 MS.gene76250:CDS
GCATGCGCAAAACCCTCCGT+TGG 0.579109 1.1:-78897615 MS.gene76250:CDS
CATGCTAGCTTTGATGCTGA+AGG 0.581379 1.1:-78894439 MS.gene76250:CDS
CAGTACGAGGGAAAGTTCAG+TGG 0.581543 1.1:-78896893 MS.gene76250:CDS
CCCTCTCGCTTCGCTCGTCG+TGG 0.582120 1.1:-78897697 MS.gene76250:CDS
TCAGCAGCCTTTAAATCCGA+CGG 0.587420 1.1:-78896428 MS.gene76250:CDS
TGGAAGTGAAGGAAAATGAG+AGG 0.588344 1.1:+78894743 None:intergenic
TTCTTCGTAAGAAGTGGAGA+CGG 0.595190 1.1:+78897669 None:intergenic
GCTAACCCGGAGAATCCATC+CGG 0.602121 1.1:-78896775 MS.gene76250:CDS
GGGTACGTCGGCACTACAGT+TGG 0.605215 1.1:-78897295 MS.gene76250:CDS
GGCTCGAAAAGGATGAGCCA+TGG 0.609855 1.1:+78897752 None:intergenic
GAGAGCGCAGAAACCAGCAA+TGG 0.612563 1.1:+78897483 None:intergenic
TGTGGAGTCAAAAGAAAGTG+TGG 0.613439 1.1:-78894380 MS.gene76250:CDS
CCCAGTGAAACTTCTAGCAA+CGG 0.614618 1.1:+78897315 None:intergenic
GAGGTAGCTAAAAGCACCAC+CGG 0.615563 1.1:+78897414 None:intergenic
CCGTTGCTAGAAGTTTCACT+GGG 0.617302 1.1:-78897315 MS.gene76250:CDS
GAGAGGAGAAAAGACACTGT+TGG 0.618575 1.1:+78894760 None:intergenic
CAAATTCACCGAATGTGACA+CGG 0.619866 1.1:+78897392 None:intergenic
TTATGATGCTGTTTCAACAA+TGG 0.625161 1.1:-78896686 MS.gene76250:CDS
GGACCTTAGCAAACCAAGCA+GGG 0.625965 1.1:+78896285 None:intergenic
CAGGAGTGGATGTCTTTGGG+TGG 0.626322 1.1:+78896264 None:intergenic
CGTCTAGAGTGATAGGAGTG+GGG 0.627107 1.1:-78896394 MS.gene76250:CDS
TGGCAGGGACAACAAATCCA+TGG 0.628251 1.1:-78894783 MS.gene76250:CDS
CGGCTTGGAGATAGTTTCGG+AGG 0.630657 1.1:+78897731 None:intergenic
GTTGATATGCCGGTCGCCGG+TGG 0.632220 1.1:-78897430 MS.gene76250:CDS
GCAGAAACCAGCAATGGCGT+AGG 0.632234 1.1:+78897489 None:intergenic
GTGTATCTTCTGCTAAATGG+AGG 0.634630 1.1:-78897273 MS.gene76250:CDS
CAGTGTAACAAAAGGCAGAG+AGG 0.634699 1.1:+78897461 None:intergenic
AACACGGCTAGCGTGGCCAG+TGG 0.636525 1.1:+78897537 None:intergenic
TGATGCTGTTTCAACAATGG+CGG 0.639365 1.1:-78896683 MS.gene76250:CDS
AGACGCCCATCCCCATCCGT+CGG 0.647380 1.1:+78896412 None:intergenic
ATAGACGTTATGTGGTGGCA+GGG 0.647970 1.1:-78894798 MS.gene76250:CDS
GTCTAGAGTGATAGGAGTGG+GGG 0.650323 1.1:-78896393 MS.gene76250:CDS
TGTGGTCTATAGACGTTATG+TGG 0.651018 1.1:-78894806 MS.gene76250:CDS
CAACAGGAGTAGCAAAAGCA+GGG 0.652435 1.1:-78894690 MS.gene76250:CDS
TGTCATTGGACGTTCTAATG+TGG 0.654710 1.1:-78896309 MS.gene76250:CDS
TGCCAATTGACACAAGATCG+AGG 0.656869 1.1:+78894860 None:intergenic
GCAGGGATGTTAAGTGCTTG+TGG 0.657911 1.1:-78894673 MS.gene76250:CDS
TTACATGGTGGCAAATGCTG+TGG 0.657960 1.1:-78894824 MS.gene76250:CDS
GAACATACCAAGAAAAGCAG+AGG 0.660727 1.1:+78896235 None:intergenic
TACCGGACCTAGCTCGAACG+CGG 0.677641 1.1:+78897641 None:intergenic
GGCGTAGGATAGAACAACGG+CGG 0.680302 1.1:+78897504 None:intergenic
GACTAAGTCAAACCAACGGA+GGG 0.681694 1.1:+78897603 None:intergenic
AGAAGTTTCACTGGGTACGT+CGG 0.682141 1.1:-78897307 MS.gene76250:CDS
CGACTAAGTCAAACCAACGG+AGG 0.687784 1.1:+78897602 None:intergenic
AGCCGACTAAGTCAAACCAA+CGG 0.693472 1.1:+78897599 None:intergenic
AAAGAATGGTGAAATCCATG+TGG 0.695461 1.1:-78894398 MS.gene76250:CDS
GGCGTCTAGAGTGATAGGAG+TGG 0.700555 1.1:-78896396 MS.gene76250:CDS
GCGAGAGGGAGTGTTAGCGA+CGG 0.700749 1.1:+78897711 None:intergenic
AGTGAAACTTCTAGCAACGG+CGG 0.717474 1.1:+78897318 None:intergenic
AACACACCAGCAGCCCCGTG+CGG 0.719233 1.1:+78896745 None:intergenic
GGTCTATAGACGTTATGTGG+TGG 0.743313 1.1:-78894803 MS.gene76250:CDS
CGTAGGATAGAACAACGGCG+GGG 0.759650 1.1:+78897506 None:intergenic
ATTCACCGAATGTGACACGG+AGG 0.793524 1.1:+78897395 None:intergenic
AATGGCGTAGGATAGAACAA+CGG 0.799373 1.1:+78897501 None:intergenic
TGGTGAATATGATATTGACG+GGG 0.822661 1.1:-78896873 MS.gene76250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATTATATTCAACATA+AGG + chr1.1:78896792-78896811 None:intergenic 10.0%
!! AATTATTATATTCAACATAA+GGG + chr1.1:78896791-78896810 None:intergenic 10.0%
!! ATAAAAATAATTCTATACTA+AGG + chr1.1:78896542-78896561 None:intergenic 10.0%
!!! TAGTATAGAATTATTTTTAT+TGG - chr1.1:78896542-78896561 MS.gene76250:intron 10.0%
!! AACCTTATATTAAAATTAAG+AGG + chr1.1:78895919-78895938 None:intergenic 15.0%
!! ATGTAATGTATTATTATGTA+TGG - chr1.1:78895615-78895634 MS.gene76250:intron 15.0%
!! TGTAATGTATTATTATGTAT+GGG - chr1.1:78895616-78895635 MS.gene76250:intron 15.0%
!!! TTCCTCTTAATTTTAATATA+AGG - chr1.1:78895914-78895933 MS.gene76250:intron 15.0%
!! GTAATGTATTATTATGTATG+GGG - chr1.1:78895617-78895636 MS.gene76250:intron 20.0%
!! TTATAGCTTCAACAAAATTA+GGG - chr1.1:78896268-78896287 MS.gene76250:CDS 20.0%
!! TTCAAAAATATTGAAATTGC+TGG + chr1.1:78897561-78897580 None:intergenic 20.0%
!! TTTATAGCTTCAACAAAATT+AGG - chr1.1:78896267-78896286 MS.gene76250:CDS 20.0%
!!! ATGACATTAATTTGCTTTTT+AGG - chr1.1:78897141-78897160 MS.gene76250:intron 20.0%
!!! ATTTTCTTTTTCAACTCAAT+AGG - chr1.1:78896829-78896848 MS.gene76250:CDS 20.0%
!!! ATTTTTGAATTTGTTTTTGC+TGG - chr1.1:78897572-78897591 MS.gene76250:CDS 20.0%
!!! TAGTGTATTTTGTATTACTA+TGG - chr1.1:78896644-78896663 MS.gene76250:CDS 20.0%
!!! TGACATTAATTTGCTTTTTA+GGG - chr1.1:78897142-78897161 MS.gene76250:intron 20.0%
!!! TTGAGTTGAAAAAGAAAATA+AGG + chr1.1:78896828-78896847 None:intergenic 20.0%
!!! TTTTGATAGAGATTTAGTAT+TGG - chr1.1:78896368-78896387 MS.gene76250:CDS 20.0%
!!! TTTTTGAATTTGTTTTTGCT+GGG - chr1.1:78897573-78897592 MS.gene76250:CDS 20.0%
! AAAAAGTTATCATTCCCATA+TGG - chr1.1:78896606-78896625 MS.gene76250:CDS 25.0%
! AAAAGTTATCATTCCCATAT+GGG - chr1.1:78896607-78896626 MS.gene76250:CDS 25.0%
! ATGGTAATTGAAAATTTGTC+TGG - chr1.1:78895570-78895589 MS.gene76250:intron 25.0%
! CATCTAACTAATATTATGAG+TGG - chr1.1:78897105-78897124 MS.gene76250:intron 25.0%
! CTCTTGATTAAAATCATTGA+CGG - chr1.1:78896943-78896962 MS.gene76250:intron 25.0%
! CTTCTGATTAGATAAATGTA+AGG - chr1.1:78896694-78896713 MS.gene76250:CDS 25.0%
! TACTAAATCTCTATCAAAAG+AGG + chr1.1:78896367-78896386 None:intergenic 25.0%
! TTAACCTTTACCAAAAAAAG+TGG - chr1.1:78896438-78896457 MS.gene76250:CDS 25.0%
!! ATTTTTATTGGAAGTGAAAC+TGG - chr1.1:78896554-78896573 MS.gene76250:intron 25.0%
!! TTTTCAATTACCATATCGTA+AGG + chr1.1:78895564-78895583 None:intergenic 25.0%
!! TTTTTATTGGAAGTGAAACT+GGG - chr1.1:78896555-78896574 MS.gene76250:intron 25.0%
!!! TAAATATACCACTTTTCACA+TGG - chr1.1:78896493-78896512 MS.gene76250:intron 25.0%
!!! TTTTGATAGTACAATGTAAG+AGG + chr1.1:78897076-78897095 None:intergenic 25.0%
AAAGACTCCAAATCTAACAT+AGG + chr1.1:78897616-78897635 None:intergenic 30.0%
AAATAATAGACCATTTCAGG+TGG - chr1.1:78896853-78896872 MS.gene76250:CDS 30.0%
AGTGGTGAATATGATATTGA+CGG - chr1.1:78895239-78895258 MS.gene76250:intron 30.0%
ATATGTTTACAAGATTACGC+TGG + chr1.1:78896296-78896315 None:intergenic 30.0%
ATGTAAGGACAAAGACAATT+AGG - chr1.1:78896709-78896728 MS.gene76250:CDS 30.0%
ATTGGTTAATCCCTTTCTTT+AGG - chr1.1:78896386-78896405 MS.gene76250:CDS 30.0%
CACCATTCTTTATTGTCTTA+TGG - chr1.1:78895515-78895534 MS.gene76250:intron 30.0%
GCTGTTTATTTAAGCTACAT+TGG - chr1.1:78895405-78895424 MS.gene76250:intron 30.0%
GGAAAATAATAGACCATTTC+AGG - chr1.1:78896850-78896869 MS.gene76250:CDS 30.0%
GTTTCCTCATTAATGTGAAT+GGG - chr1.1:78896145-78896164 MS.gene76250:intron 30.0%
TGAAATCCAATACATGATTG+AGG + chr1.1:78897012-78897031 None:intergenic 30.0%
TGATGTCAATATTCCAAAAC+TGG + chr1.1:78895747-78895766 None:intergenic 30.0%
TGCCATAAGACAATAAAGAA+TGG + chr1.1:78895520-78895539 None:intergenic 30.0%
TGGTACACATTTCCAAATAA+GGG + chr1.1:78897406-78897425 None:intergenic 30.0%
TGTTTCCTCATTAATGTGAA+TGG - chr1.1:78896144-78896163 MS.gene76250:intron 30.0%
TTATTCACAATCCTTCACAA+AGG - chr1.1:78896032-78896051 MS.gene76250:intron 30.0%
TTGGTACACATTTCCAAATA+AGG + chr1.1:78897407-78897426 None:intergenic 30.0%
! ACTCTTTGTATTTTACATGG+TGG - chr1.1:78897278-78897297 MS.gene76250:CDS 30.0%
! ATAGCATTTGTGATAGTGAT+AGG - chr1.1:78895279-78895298 MS.gene76250:intron 30.0%
! ATCATTGATAGTTGCTATGT+TGG - chr1.1:78895763-78895782 MS.gene76250:intron 30.0%
! CACACTCTTTGTATTTTACA+TGG - chr1.1:78897275-78897294 MS.gene76250:CDS 30.0%
! TCATTGATAGTTGCTATGTT+GGG - chr1.1:78895764-78895783 MS.gene76250:intron 30.0%
! TGATGTTAGTGTTTTCTGAA+TGG - chr1.1:78896007-78896026 MS.gene76250:intron 30.0%
!! ATAGTGATAGGTTTTTGGAA+AGG - chr1.1:78895291-78895310 MS.gene76250:intron 30.0%
!! CGTCAATGATTTTAATCAAG+AGG + chr1.1:78896945-78896964 None:intergenic 30.0%
!! TAGTGATAGGTTTTTGGAAA+GGG - chr1.1:78895292-78895311 MS.gene76250:intron 30.0%
!! TGTTCAATTTTTCAGTACGA+GGG - chr1.1:78895209-78895228 MS.gene76250:intron 30.0%
!! TTATGATGCTGTTTCAACAA+TGG - chr1.1:78895428-78895447 MS.gene76250:intron 30.0%
!! TTGCTGTGTTTTTAATTCCT+TGG - chr1.1:78895966-78895985 MS.gene76250:intron 30.0%
!! TTGTGATAGTGATAGGTTTT+TGG - chr1.1:78895286-78895305 MS.gene76250:intron 30.0%
!! TTGTTCAATTTTTCAGTACG+AGG - chr1.1:78895208-78895227 MS.gene76250:intron 30.0%
!!! ACTTAAAAGCACTTCTCTTT+TGG + chr1.1:78896464-78896483 None:intergenic 30.0%
AAAACATGTGACACCCATAT+GGG + chr1.1:78896623-78896642 None:intergenic 35.0%
AAAGAATGGTGAAATCCATG+TGG - chr1.1:78897716-78897735 MS.gene76250:CDS 35.0%
AAGATAGTATTTACCGAGGT+GGG + chr1.1:78896677-78896696 None:intergenic 35.0%
ACAATCATCCATGTGAAAAG+TGG + chr1.1:78896504-78896523 None:intergenic 35.0%
ACAATCCTTCACAAAGGAAA+GGG - chr1.1:78896038-78896057 MS.gene76250:intron 35.0%
ACCACTATATAGGTAGATTG+AGG - chr1.1:78896413-78896432 MS.gene76250:CDS 35.0%
ACTCCAAATCTAACATAGGA+TGG + chr1.1:78897612-78897631 None:intergenic 35.0%
ACTGAGTTCATCGTTTACAA+TGG - chr1.1:78895135-78895154 MS.gene76250:intron 35.0%
AGAGGCTATATTGTTGAAGT+GGG + chr1.1:78896065-78896084 None:intergenic 35.0%
ATCAACTCATCCAATAGTGA+AGG + chr1.1:78896917-78896936 None:intergenic 35.0%
ATTGAAATTGCTGGTATCCA+TGG + chr1.1:78897552-78897571 None:intergenic 35.0%
ATTTGGAAATGTGTACCAAC+AGG - chr1.1:78897408-78897427 MS.gene76250:CDS 35.0%
CCTATAGGAATATCTTTCAC+AGG + chr1.1:78895471-78895490 None:intergenic 35.0%
CCTGAAATTGACATTATGTG+CGG + chr1.1:78897189-78897208 None:intergenic 35.0%
CCTGTGAAAGATATTCCTAT+AGG - chr1.1:78895468-78895487 MS.gene76250:intron 35.0%
CGCACATAATGTCAATTTCA+GGG - chr1.1:78897187-78897206 MS.gene76250:CDS 35.0%
GATTTAAAGGCTGCTGAAAA+CGG + chr1.1:78895683-78895702 None:intergenic 35.0%
GATTTGTGTAGTTATTCTGC+TGG - chr1.1:78896104-78896123 MS.gene76250:intron 35.0%
GCAAAAGATACACACTCAAT+CGG + chr1.1:78896210-78896229 None:intergenic 35.0%
GTGGTGAATATGATATTGAC+GGG - chr1.1:78895240-78895259 MS.gene76250:intron 35.0%
TCAGAAGATAGTATTTACCG+AGG + chr1.1:78896681-78896700 None:intergenic 35.0%
TCATAATGAAGGTGACAATG+TGG + chr1.1:78896185-78896204 None:intergenic 35.0%
TGAACCCATTCACATTAATG+AGG + chr1.1:78896152-78896171 None:intergenic 35.0%
TGATTCCATACCTTCACTAT+TGG - chr1.1:78896904-78896923 MS.gene76250:intron 35.0%
TGGTGAATATGATATTGACG+GGG - chr1.1:78895241-78895260 MS.gene76250:intron 35.0%
TTAAACCCTTTCGGAAAAGA+AGG + chr1.1:78894876-78894895 None:intergenic 35.0%
TTGCTAAAGTCTCATGATTC+CGG + chr1.1:78896238-78896257 None:intergenic 35.0%
TTGGTGTATCTTCTGCTAAA+TGG - chr1.1:78894838-78894857 MS.gene76250:CDS 35.0%
TTTAGGCTCAACCACTATAT+AGG - chr1.1:78896403-78896422 MS.gene76250:CDS 35.0%
! AGAATTGTCTAGGATAAGTC+TGG + chr1.1:78896320-78896339 None:intergenic 35.0%
!! ATCAAAAGAGGTACCACATT+TGG + chr1.1:78896355-78896374 None:intergenic 35.0%
!! TCGATTTGGTTAAACCCTTT+CGG + chr1.1:78894885-78894904 None:intergenic 35.0%
!!! TCTCTTTTGGCCACTTTTTT+TGG + chr1.1:78896451-78896470 None:intergenic 35.0%
!!! TTGGCCACTTTTTTTGGTAA+AGG + chr1.1:78896445-78896464 None:intergenic 35.0%
AATGGCGTAGGATAGAACAA+CGG + chr1.1:78894616-78894635 None:intergenic 40.0%
ACAGTCACAGACAACATACA+CGG - chr1.1:78894997-78895016 MS.gene76250:intron 40.0%
AGATAGTATTTACCGAGGTG+GGG + chr1.1:78896676-78896695 None:intergenic 40.0%
AGGGTTTAACCAAATCGACT+TGG - chr1.1:78894887-78894906 MS.gene76250:CDS 40.0%
AGTGGTTGAGCCTAAAGAAA+GGG + chr1.1:78896399-78896418 None:intergenic 40.0%
ATCCATGATGAGATTTGCAC+CGG + chr1.1:78894760-78894779 None:intergenic 40.0%
CAAATTCACCGAATGTGACA+CGG + chr1.1:78894725-78894744 None:intergenic 40.0%
CACAATCCTTCACAAAGGAA+AGG - chr1.1:78896037-78896056 MS.gene76250:intron 40.0%
CACTTCAACAATATAGCCTC+TGG - chr1.1:78896064-78896083 MS.gene76250:intron 40.0%
CAGAGGCTATATTGTTGAAG+TGG + chr1.1:78896066-78896085 None:intergenic 40.0%
CATGCTTCTTCCTTACGATA+TGG - chr1.1:78895551-78895570 MS.gene76250:intron 40.0%
CCAAATAAGGGTGAACATGA+TGG + chr1.1:78897394-78897413 None:intergenic 40.0%
CCAATATCTTCCACCTGAAA+TGG + chr1.1:78896866-78896885 None:intergenic 40.0%
CCATCATGTTCACCCTTATT+TGG - chr1.1:78897391-78897410 MS.gene76250:CDS 40.0%
CCGCACATAATGTCAATTTC+AGG - chr1.1:78897186-78897205 MS.gene76250:CDS 40.0%
CTCATCCAATAGTGAAGGTA+TGG + chr1.1:78896912-78896931 None:intergenic 40.0%
CTGCTACAACAGAATTGTCT+AGG + chr1.1:78896330-78896349 None:intergenic 40.0%
GAAAACATGTGACACCCATA+TGG + chr1.1:78896624-78896643 None:intergenic 40.0%
GAACATACCAAGAAAAGCAG+AGG + chr1.1:78895882-78895901 None:intergenic 40.0%
GAAGATAGTATTTACCGAGG+TGG + chr1.1:78896678-78896697 None:intergenic 40.0%
GAATTTGCGGCGTTTATAAC+CGG - chr1.1:78894738-78894757 MS.gene76250:CDS 40.0%
GATATTCCTATAGGTGTCTC+TGG - chr1.1:78895477-78895496 MS.gene76250:intron 40.0%
GCCTCAATCTACCTATATAG+TGG + chr1.1:78896417-78896436 None:intergenic 40.0%
GCTCATTTCTTCGTAAGAAG+TGG + chr1.1:78894454-78894473 None:intergenic 40.0%
GCTCGTTATATGTGTGTCAT+TGG - chr1.1:78895791-78895810 MS.gene76250:intron 40.0%
GGCAAACTCAGTGTAACAAA+AGG + chr1.1:78894664-78894683 None:intergenic 40.0%
GGTTCTCTTGGTCAAAAGAA+TGG - chr1.1:78897702-78897721 MS.gene76250:CDS 40.0%
GTCAATTTCAGGGATCTTCA+CGG - chr1.1:78897197-78897216 MS.gene76250:CDS 40.0%
GTGTATCTTCTGCTAAATGG+AGG - chr1.1:78894841-78894860 MS.gene76250:CDS 40.0%
TAGTGGTTGAGCCTAAAGAA+AGG + chr1.1:78896400-78896419 None:intergenic 40.0%
TGGAAGTGAAGGAAAATGAG+AGG + chr1.1:78897374-78897393 None:intergenic 40.0%
TGTCATTGGACGTTCTAATG+TGG - chr1.1:78895805-78895824 MS.gene76250:intron 40.0%
TGTGGAGTCAAAAGAAAGTG+TGG - chr1.1:78897734-78897753 MS.gene76250:CDS 40.0%
TGTGGTCTATAGACGTTATG+TGG - chr1.1:78897308-78897327 MS.gene76250:CDS 40.0%
TTAAGAGGAAGCAAGCACAT+TGG + chr1.1:78895904-78895923 None:intergenic 40.0%
TTCTTCGTAAGAAGTGGAGA+CGG + chr1.1:78894448-78894467 None:intergenic 40.0%
TTGTGTAGGCTGCTTAAAGT+TGG - chr1.1:78896986-78897005 MS.gene76250:intron 40.0%
! AAAAAACCGGATGGATTCTC+CGG + chr1.1:78895348-78895367 None:intergenic 40.0%
! AAGCTAGGAAGCCAGAATTT+TGG - chr1.1:78897511-78897530 MS.gene76250:CDS 40.0%
! ACAGTTCCTTCTTTTCCGAA+AGG - chr1.1:78894867-78894886 MS.gene76250:CDS 40.0%
! AGCTAGGAAGCCAGAATTTT+GGG - chr1.1:78897512-78897531 MS.gene76250:CDS 40.0%
! AGTTGGCCTCAATCATGTAT+TGG - chr1.1:78897003-78897022 MS.gene76250:intron 40.0%
! ATGACCTTAGCTCTTTGTGT+AGG - chr1.1:78896972-78896991 MS.gene76250:intron 40.0%
! ATGTTAAGTGTGTTGCTCTG+TGG - chr1.1:78896739-78896758 MS.gene76250:CDS 40.0%
! CAGTTCCTTCTTTTCCGAAA+GGG - chr1.1:78894868-78894887 MS.gene76250:CDS 40.0%
! CCATTTCAGGTGGAAGATAT+TGG - chr1.1:78896863-78896882 MS.gene76250:CDS 40.0%
! CTCAATCGGCTTCATAATGA+AGG + chr1.1:78896196-78896215 None:intergenic 40.0%
! TGAGTGTGTATCTTTTGCGT+TGG - chr1.1:78896212-78896231 MS.gene76250:intron 40.0%
! TGTCACATTCGGTGAATTTG+CGG - chr1.1:78894725-78894744 MS.gene76250:CDS 40.0%
! TTTTGCTGGGATCACTTGAT+GGG - chr1.1:78897586-78897605 MS.gene76250:CDS 40.0%
! TTTTTGCTGGGATCACTTGA+TGG - chr1.1:78897585-78897604 MS.gene76250:CDS 40.0%
!! ACACTTTGAAACTTTGGTCC+AGG + chr1.1:78897761-78897780 None:intergenic 40.0%
!! CACTTTCTTTTGACTCCACA+TGG + chr1.1:78897734-78897753 None:intergenic 40.0%
!! GTGGTGGATATTGATCAAGA+AGG + chr1.1:78894972-78894991 None:intergenic 40.0%
!! TAGGTTTTTGGAAAGGGAGT+TGG - chr1.1:78895298-78895317 MS.gene76250:intron 40.0%
!! TGATGCTGTTTCAACAATGG+CGG - chr1.1:78895431-78895450 MS.gene76250:intron 40.0%
AACCGGTGCAAATCTCATCA+TGG - chr1.1:78894755-78894774 MS.gene76250:CDS 45.0%
AACGATGAACTCAGTAGCAC+CGG + chr1.1:78895130-78895149 None:intergenic 45.0%
ACAGATCCAGAGACACCTAT+AGG + chr1.1:78895486-78895505 None:intergenic 45.0%
AGAAAAGACACTGTTGGCCA+TGG + chr1.1:78897351-78897370 None:intergenic 45.0%
AGAAGTTTCACTGGGTACGT+CGG - chr1.1:78894807-78894826 MS.gene76250:CDS 45.0%
AGCCGACTAAGTCAAACCAA+CGG + chr1.1:78894518-78894537 None:intergenic 45.0%
AGCCTTTAAATCCGACGGAT+GGG - chr1.1:78895691-78895710 MS.gene76250:intron 45.0%
AGTGAAACTTCTAGCAACGG+CGG + chr1.1:78894799-78894818 None:intergenic 45.0%
AGTGGTACACCCCAAAATTC+TGG + chr1.1:78897525-78897544 None:intergenic 45.0%
ATAGACGTTATGTGGTGGCA+GGG - chr1.1:78897316-78897335 MS.gene76250:CDS 45.0%
ATAGTTTCGGAGGCTCGAAA+AGG + chr1.1:78894376-78894395 None:intergenic 45.0%
ATCGGACACACTTTGATCAG+AGG - chr1.1:78895102-78895121 MS.gene76250:intron 45.0%
ATTTCACTGTCCCTCAAGCT+AGG - chr1.1:78897496-78897515 MS.gene76250:CDS 45.0%
CAACAGGAGTAGCAAAAGCA+GGG - chr1.1:78897424-78897443 MS.gene76250:CDS 45.0%
CAGTGTAACAAAAGGCAGAG+AGG + chr1.1:78894656-78894675 None:intergenic 45.0%
CCCAGTGAAACTTCTAGCAA+CGG + chr1.1:78894802-78894821 None:intergenic 45.0%
CCGTTGCTAGAAGTTTCACT+GGG - chr1.1:78894799-78894818 MS.gene76250:CDS 45.0%
CTCCTCGATCTTGTGTCAAT+TGG - chr1.1:78897252-78897271 MS.gene76250:CDS 45.0%
CTCTGGCTGAGATTTGATCA+GGG - chr1.1:78896081-78896100 MS.gene76250:intron 45.0%
GACTAAGTCAAACCAACGGA+GGG + chr1.1:78894514-78894533 None:intergenic 45.0%
GAGAGGAGAAAAGACACTGT+TGG + chr1.1:78897357-78897376 None:intergenic 45.0%
GATAGTTGCTATGTTGGGTC+AGG - chr1.1:78895769-78895788 MS.gene76250:intron 45.0%
GGGCCATCCTATGTTAGATT+TGG - chr1.1:78897606-78897625 MS.gene76250:CDS 45.0%
GGTCTATAGACGTTATGTGG+TGG - chr1.1:78897311-78897330 MS.gene76250:CDS 45.0%
GTGGCTTAGGATGGAAAGAT+TGG - chr1.1:78896758-78896777 MS.gene76250:CDS 45.0%
GTGTTGTGTCTCAGAGACAT+CGG - chr1.1:78895084-78895103 MS.gene76250:intron 45.0%
TAATTCCTTGGCAACGTGTG+TGG - chr1.1:78895978-78895997 MS.gene76250:intron 45.0%
TATAGACGTTATGTGGTGGC+AGG - chr1.1:78897315-78897334 MS.gene76250:CDS 45.0%
TCACAGTCGTTATCTGCTAC+AGG - chr1.1:78894934-78894953 MS.gene76250:intron 45.0%
TCAGCAGCCTTTAAATCCGA+CGG - chr1.1:78895686-78895705 MS.gene76250:intron 45.0%
TCTGGCTGAGATTTGATCAG+GGG - chr1.1:78896082-78896101 MS.gene76250:intron 45.0%
TGACAGGAGTGGATGTCTTT+GGG + chr1.1:78895856-78895875 None:intergenic 45.0%
TGAGTTTGCCGTTGATATGC+CGG - chr1.1:78894674-78894693 MS.gene76250:CDS 45.0%
TGCCAATTGACACAAGATCG+AGG + chr1.1:78897257-78897276 None:intergenic 45.0%
TGTTGTAGCAGCACCAAATG+TGG - chr1.1:78896339-78896358 MS.gene76250:CDS 45.0%
TTACATGGTGGCAAATGCTG+TGG - chr1.1:78897290-78897309 MS.gene76250:CDS 45.0%
TTGACAGGAGTGGATGTCTT+TGG + chr1.1:78895857-78895876 None:intergenic 45.0%
TTGTCTGTGACTGTGCTTAG+TGG + chr1.1:78894991-78895010 None:intergenic 45.0%
! AAAAACCGGATGGATTCTCC+GGG + chr1.1:78895347-78895366 None:intergenic 45.0%
! AACAATGGCGGAAGAGGTTA+AGG - chr1.1:78895443-78895462 MS.gene76250:intron 45.0%
! AGCTTTGATGCTGAAGGAGA+TGG - chr1.1:78897681-78897700 MS.gene76250:CDS 45.0%
! GCTAGGAAGCCAGAATTTTG+GGG - chr1.1:78897513-78897532 MS.gene76250:CDS 45.0%
! GGTGAACATGATGGAAGTGA+AGG + chr1.1:78897385-78897404 None:intergenic 45.0%
! GTCAAAAGAAAGTGTGGACC+TGG - chr1.1:78897740-78897759 MS.gene76250:CDS 45.0%
! TGGTTTGACTTAGTCGGCTT+TGG - chr1.1:78894519-78894538 MS.gene76250:CDS 45.0%
! TGTTTCAACAATGGCGGAAG+AGG - chr1.1:78895437-78895456 MS.gene76250:intron 45.0%
! TTTTACGCAACCAGCTAACC+CGG - chr1.1:78895326-78895345 MS.gene76250:intron 45.0%
!! AATTCTGGCTTCCTAGCTTG+AGG + chr1.1:78897510-78897529 None:intergenic 45.0%
!! ATTCTGGCTTCCTAGCTTGA+GGG + chr1.1:78897509-78897528 None:intergenic 45.0%
!! CATGCTAGCTTTGATGCTGA+AGG - chr1.1:78897675-78897694 MS.gene76250:CDS 45.0%
!! CTCCGTTGGTTTGACTTAGT+CGG - chr1.1:78894513-78894532 MS.gene76250:CDS 45.0%
!! TGTGTATCTTTTGCGTTGGC+CGG - chr1.1:78896216-78896235 MS.gene76250:intron 45.0%
AGCTACCTCCGTGTCACATT+CGG - chr1.1:78894714-78894733 MS.gene76250:CDS 50.0%
ATTCACCGAATGTGACACGG+AGG + chr1.1:78894722-78894741 None:intergenic 50.0%
CAGCCTTTAAATCCGACGGA+TGG - chr1.1:78895690-78895709 MS.gene76250:intron 50.0%
CAGTACGAGGGAAAGTTCAG+TGG - chr1.1:78895221-78895240 MS.gene76250:intron 50.0%
CCAACAGGAGTAGCAAAAGC+AGG - chr1.1:78897423-78897442 MS.gene76250:CDS 50.0%
CCTCTGGCTGAGATTTGATC+AGG - chr1.1:78896080-78896099 MS.gene76250:intron 50.0%
CCTGATCAAATCTCAGCCAG+AGG + chr1.1:78896083-78896102 None:intergenic 50.0%
CGACAGCAACCAAGTCGATT+TGG + chr1.1:78894899-78894918 None:intergenic 50.0%
CGACTAAGTCAAACCAACGG+AGG + chr1.1:78894515-78894534 None:intergenic 50.0%
GCAGCCTACACAAAGAGCTA+AGG + chr1.1:78896979-78896998 None:intergenic 50.0%
GCAGGGATGTTAAGTGCTTG+TGG - chr1.1:78897441-78897460 MS.gene76250:CDS 50.0%
GCCGTTGCTAGAAGTTTCAC+TGG - chr1.1:78894798-78894817 MS.gene76250:CDS 50.0%
GCCTTTAAATCCGACGGATG+GGG - chr1.1:78895692-78895711 MS.gene76250:intron 50.0%
GCTGAAGGAGATGGTTCTCT+TGG - chr1.1:78897690-78897709 MS.gene76250:CDS 50.0%
GCTGGTATCCATGGCATAAG+TGG + chr1.1:78897543-78897562 None:intergenic 50.0%
GGACCTTAGCAAACCAAGCA+GGG + chr1.1:78895832-78895851 None:intergenic 50.0%
GTTCTAATGTGGTCCCTGCT+TGG - chr1.1:78895816-78895835 MS.gene76250:intron 50.0%
GTTCTATCCTACGCCATTGC+TGG - chr1.1:78894618-78894637 MS.gene76250:CDS 50.0%
TAAATCCGACGGATGGGGAT+GGG - chr1.1:78895697-78895716 MS.gene76250:intron 50.0%
TAGTATTTACCGAGGTGGGG+AGG + chr1.1:78896673-78896692 None:intergenic 50.0%
TCCCCATCCGTCGGATTTAA+AGG + chr1.1:78895696-78895715 None:intergenic 50.0%
TCTGTGACTGTGCTTAGTGG+TGG + chr1.1:78894988-78895007 None:intergenic 50.0%
TGGACCTTAGCAAACCAAGC+AGG + chr1.1:78895833-78895852 None:intergenic 50.0%
TGGCAGGGACAACAAATCCA+TGG - chr1.1:78897331-78897350 MS.gene76250:CDS 50.0%
TGGGTCCCTTTCCTTTGTGA+AGG + chr1.1:78896046-78896065 None:intergenic 50.0%
TGTTGCTCTGTGGCTTAGGA+TGG - chr1.1:78896749-78896768 MS.gene76250:CDS 50.0%
TTAAATCCGACGGATGGGGA+TGG - chr1.1:78895696-78895715 MS.gene76250:intron 50.0%
! AGTGTGTTGCTCTGTGGCTT+AGG - chr1.1:78896745-78896764 MS.gene76250:CDS 50.0%
! CACACTTTGATCAGAGGTGC+CGG - chr1.1:78895108-78895127 MS.gene76250:intron 50.0%
! CGACGGCTTGGAGATAGTTT+CGG + chr1.1:78894389-78894408 None:intergenic 50.0%
! CGTCTAGAGTGATAGGAGTG+GGG - chr1.1:78895720-78895739 MS.gene76250:intron 50.0%
! GACTTAGTCGGCTTTGGCAT+CGG - chr1.1:78894525-78894544 MS.gene76250:CDS 50.0%
! GCGTCTAGAGTGATAGGAGT+GGG - chr1.1:78895719-78895738 MS.gene76250:intron 50.0%
! GTCTAGAGTGATAGGAGTGG+GGG - chr1.1:78895721-78895740 MS.gene76250:intron 50.0%
!! AGAAAAGCAGAGGCGTTGAC+AGG + chr1.1:78895872-78895891 None:intergenic 50.0%
!! CCTGCTTTTGCTACTCCTGT+TGG + chr1.1:78897426-78897445 None:intergenic 50.0%
!! GAGGTAGCTAAAAGCACCAC+CGG + chr1.1:78894703-78894722 None:intergenic 50.0%
!! GTCAACGCCTCTGCTTTTCT+TGG - chr1.1:78895872-78895891 MS.gene76250:intron 50.0%
!!! ATCCGGTTTTTTTCCGCACG+GGG - chr1.1:78895356-78895375 MS.gene76250:intron 50.0%
!!! CATCCGGTTTTTTTCCGCAC+GGG - chr1.1:78895355-78895374 MS.gene76250:intron 50.0%
!!! CCATCCGGTTTTTTTCCGCA+CGG - chr1.1:78895354-78895373 MS.gene76250:intron 50.0%
AAATGAGCCGCGTTCGAGCT+AGG - chr1.1:78894466-78894485 MS.gene76250:CDS 55.0%
ACCATCCACACACGTTGCCA+AGG + chr1.1:78895986-78896005 None:intergenic 55.0%
AGCCCCGTGCGGAAAAAAAC+CGG + chr1.1:78895361-78895380 None:intergenic 55.0%
CAGGAGTGGATGTCTTTGGG+TGG + chr1.1:78895853-78895872 None:intergenic 55.0%
CCGTGCGGAAAAAAACCGGA+TGG + chr1.1:78895357-78895376 None:intergenic 55.0%
CGTAGGATAGAACAACGGCG+GGG + chr1.1:78894611-78894630 None:intergenic 55.0%
GCAGAAACCAGCAATGGCGT+AGG + chr1.1:78894628-78894647 None:intergenic 55.0%
GCGTAGGATAGAACAACGGC+GGG + chr1.1:78894612-78894631 None:intergenic 55.0%
GCTAACCCGGAGAATCCATC+CGG - chr1.1:78895339-78895358 MS.gene76250:intron 55.0%
GCTGCTGAAAACGGTGCTTC+AGG + chr1.1:78895674-78895693 None:intergenic 55.0%
GGCGTAGGATAGAACAACGG+CGG + chr1.1:78894613-78894632 None:intergenic 55.0%
GGCTCGAAAAGGATGAGCCA+TGG + chr1.1:78894365-78894384 None:intergenic 55.0%
GGGGCTGCTGGTGTGTTTAA+CGG - chr1.1:78895375-78895394 MS.gene76250:intron 55.0%
GGGGTGTACCACTTATGCCA+TGG - chr1.1:78897532-78897551 MS.gene76250:CDS 55.0%
TCCTTGGCAACGTGTGTGGA+TGG - chr1.1:78895982-78896001 MS.gene76250:intron 55.0%
! ATAGGAGTGGGGGCCAGTTT+TGG - chr1.1:78895731-78895750 MS.gene76250:intron 55.0%
! CGGCTTGGAGATAGTTTCGG+AGG + chr1.1:78894386-78894405 None:intergenic 55.0%
! GAGAGCGCAGAAACCAGCAA+TGG + chr1.1:78894634-78894653 None:intergenic 55.0%
! GGATGGGCGTCTAGAGTGAT+AGG - chr1.1:78895713-78895732 MS.gene76250:intron 55.0%
! GGCGTCTAGAGTGATAGGAG+TGG - chr1.1:78895718-78895737 MS.gene76250:intron 55.0%
! GGTTTTGCGCATGCTGGTAC+CGG + chr1.1:78894493-78894512 None:intergenic 55.0%
! TTAGTCGGCTTTGGCATCGG+CGG - chr1.1:78894528-78894547 MS.gene76250:CDS 55.0%
!! GATGGATTCTCCGGGTTAGC+TGG + chr1.1:78895339-78895358 None:intergenic 55.0%
!! GGTCCCTGCTTGGTTTGCTA+AGG - chr1.1:78895826-78895845 MS.gene76250:intron 55.0%
ACCGGCGACCGGCATATCAA+CGG + chr1.1:78894685-78894704 None:intergenic 60.0%
CTATGGTAGCCTCCCCACCT+CGG - chr1.1:78896661-78896680 MS.gene76250:CDS 60.0%
GCATGCGCAAAACCCTCCGT+TGG - chr1.1:78894499-78894518 MS.gene76250:CDS 60.0%
GCTGGAGTCTTCGTCACCAC+TGG - chr1.1:78894561-78894580 MS.gene76250:CDS 60.0%
GGGTACGTCGGCACTACAGT+TGG - chr1.1:78894819-78894838 MS.gene76250:CDS 60.0%
TACCGGACCTAGCTCGAACG+CGG + chr1.1:78894476-78894495 None:intergenic 60.0%
! ACGGAGGGTTTTGCGCATGC+TGG + chr1.1:78894499-78894518 None:intergenic 60.0%
!! AGCAGAGGCGTTGACAGGAG+TGG + chr1.1:78895867-78895886 None:intergenic 60.0%
!! AGGGAGTGTTAGCGACGGCT+TGG + chr1.1:78894401-78894420 None:intergenic 60.0%
!! CTAAAAGCACCACCGGCGAC+CGG + chr1.1:78894696-78894715 None:intergenic 60.0%
!! GCGAGAGGGAGTGTTAGCGA+CGG + chr1.1:78894406-78894425 None:intergenic 60.0%
!! TAGTCGGCTTTGGCATCGGC+GGG - chr1.1:78894529-78894548 MS.gene76250:CDS 60.0%
!! TTTGGCATCGGCGGGATGGT+CGG - chr1.1:78894537-78894556 MS.gene76250:CDS 60.0%
!!! TTTTTTCCGCACGGGGCTGC+TGG - chr1.1:78895363-78895382 MS.gene76250:intron 60.0%
AACACACCAGCAGCCCCGTG+CGG + chr1.1:78895372-78895391 None:intergenic 65.0%
AACACGGCTAGCGTGGCCAG+TGG + chr1.1:78894580-78894599 None:intergenic 65.0%
AGACGCCCATCCCCATCCGT+CGG + chr1.1:78895705-78895724 None:intergenic 65.0%
AGCCGCGTTCGAGCTAGGTC+CGG - chr1.1:78894471-78894490 MS.gene76250:CDS 65.0%
CACGCTAGCCGTGTTCACGC+TGG - chr1.1:78894585-78894604 MS.gene76250:CDS 65.0%
CAGCGTGAACACGGCTAGCG+TGG + chr1.1:78894587-78894606 None:intergenic 65.0%
CCACGACGAGCGAAGCGAGA+GGG + chr1.1:78894420-78894439 None:intergenic 65.0%
GCCGTTGATATGCCGGTCGC+CGG - chr1.1:78894681-78894700 MS.gene76250:CDS 65.0%
GTTGATATGCCGGTCGCCGG+TGG - chr1.1:78894684-78894703 MS.gene76250:CDS 65.0%
CCCTCTCGCTTCGCTCGTCG+TGG - chr1.1:78894417-78894436 MS.gene76250:CDS 70.0%
GCCACGACGAGCGAAGCGAG+AGG + chr1.1:78894421-78894440 None:intergenic 70.0%
!! CGGCTTTGGCATCGGCGGGA+TGG - chr1.1:78894533-78894552 MS.gene76250:CDS 70.0%
ATCGGCGGGATGGTCGGCGC+TGG - chr1.1:78894543-78894562 MS.gene76250:CDS 75.0%
CGGCGGGGCCAGCGTGAACA+CGG + chr1.1:78894596-78894615 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 78894354 78897782 78894354 ID=MS.gene76250
chr1.1 mRNA 78894354 78897782 78894354 ID=MS.gene76250.t1;Parent=MS.gene76250
chr1.1 exon 78897181 78897782 78897181 ID=MS.gene76250.t1.exon1;Parent=MS.gene76250.t1
chr1.1 CDS 78897181 78897782 78897181 ID=cds.MS.gene76250.t1;Parent=MS.gene76250.t1
chr1.1 exon 78896564 78896912 78896564 ID=MS.gene76250.t1.exon2;Parent=MS.gene76250.t1
chr1.1 CDS 78896564 78896912 78896564 ID=cds.MS.gene76250.t1;Parent=MS.gene76250.t1
chr1.1 exon 78896243 78896471 78896243 ID=MS.gene76250.t1.exon3;Parent=MS.gene76250.t1
chr1.1 CDS 78896243 78896471 78896243 ID=cds.MS.gene76250.t1;Parent=MS.gene76250.t1
chr1.1 exon 78894354 78894928 78894354 ID=MS.gene76250.t1.exon4;Parent=MS.gene76250.t1
chr1.1 CDS 78894354 78894928 78894354 ID=cds.MS.gene76250.t1;Parent=MS.gene76250.t1
Gene Sequence

>MS.gene76250

ATGACAAGCCATGGCTCATCCTTTTCGAGCCTCCGAAACTATCTCCAAGCCGTCGCTAACACTCCCTCTCGCTTCGCTCGTCGTGGCTTCTCCGTCTCCACTTCTTACGAAGAAATGAGCCGCGTTCGAGCTAGGTCCGGTACCAGCATGCGCAAAACCCTCCGTTGGTTTGACTTAGTCGGCTTTGGCATCGGCGGGATGGTCGGCGCTGGAGTCTTCGTCACCACTGGCCACGCTAGCCGTGTTCACGCTGGCCCCGCCGTTGTTCTATCCTACGCCATTGCTGGTTTCTGCGCTCTCCTCTCTGCCTTTTGTTACACTGAGTTTGCCGTTGATATGCCGGTCGCCGGTGGTGCTTTTAGCTACCTCCGTGTCACATTCGGTGAATTTGCGGCGTTTATAACCGGTGCAAATCTCATCATGGATTACGTCATGTCAAATGCCGCCGTTGCTAGAAGTTTCACTGGGTACGTCGGCACTACAGTTGGTGTATCTTCTGCTAAATGGAGGATCACAGTTCCTTCTTTTCCGAAAGGGTTTAACCAAATCGACTTGGTTGCTGTCGTCGTTGTTTTACTCATCACAGTCGTTATCTGCTACAGGTTTGTAACTGATCCTTCTTGATCAATATCCACCACTAAGCACAGTCACAGACAACATACACGGTATGATAGTCTCTGATAATTTGAGAAAATGAGTTAATTGAATGTGTTCGTGTTCACGTGTGTCAGTGTTGTGTCTCAGAGACATCGGACACACTTTGATCAGAGGTGCCGGTGCTACTGAGTTCATCGTTTACAATGGAGCACAATTTTCTTTTTAAAAATTCATGAACATTTTATTTATTTATTTTTTTGTTCAATTTTTCAGTACGAGGGAAAGTTCAGTGGTGAATATGATATTGACGGGGTTGCACATACTATTCATAGCATTTGTGATAGTGATAGGTTTTTGGAAAGGGAGTTGGAAGAATTTTACGCAACCAGCTAACCCGGAGAATCCATCCGGTTTTTTTCCGCACGGGGCTGCTGGTGTGTTTAACGGTGCAGCAGCTGTTTATTTAAGCTACATTGGTTATGATGCTGTTTCAACAATGGCGGAAGAGGTTAAGGAGCCTGTGAAAGATATTCCTATAGGTGTCTCTGGATCTGTTATTATTGTCACCATTCTTTATTGTCTTATGGCAGCTTCAATGTGCATGCTTCTTCCTTACGATATGGTAATTGAAAATTTGTCTGGTTTTCAATAATTATATGATATGATGTAATGTATTATTATGTATGGGGTATTGATATTGATAATATGTTATAGATCGATCCTGAAGCACCGTTTTCAGCAGCCTTTAAATCCGACGGATGGGGATGGGCGTCTAGAGTGATAGGAGTGGGGGCCAGTTTTGGAATATTGACATCATTGATAGTTGCTATGTTGGGTCAGGCTCGTTATATGTGTGTCATTGGACGTTCTAATGTGGTCCCTGCTTGGTTTGCTAAGGTCCACCCAAAGACATCCACTCCTGTCAACGCCTCTGCTTTTCTTGGTATGTTCCAATGTGCTTGCTTCCTCTTAATTTTAATATAAGGTTTTTCATGTTTAAGTATATGTTGTTTGATTGCTGTGTTTTTAATTCCTTGGCAACGTGTGTGGATGGTGTGATGTTAGTGTTTTCTGAATGGTATTATTCACAATCCTTCACAAAGGAAAGGGACCCACTTCAACAATATAGCCTCTGGCTGAGATTTGATCAGGGGATTTGTGTAGTTATTCTGCTGGATTGTGATAAGATTTTATGTTTCCTCATTAATGTGAATGGGTTCAGTGTAGCTCTCCACATTGTCACCTTCATTATGAAGCCGATTGAGTGTGTATCTTTTGCGTTGGCCGGAATCATGAGACTTTAGCAAAAACTATAATTTATAGCTTCAACAAAATTAGGGTGCCAGCGTAATCTTGTAAACATATACCAGACTTATCCTAGACAATTCTGTTGTAGCAGCACCAAATGTGGTACCTCTTTTGATAGAGATTTAGTATTGGTTAATCCCTTTCTTTAGGCTCAACCACTATATAGGTAGATTGAGGCTTTAACCTTTACCAAAAAAAGTGGCCAAAAGAGAAGTGCTTTTAAGTTTTAGCAGTTAAATATACCACTTTTCACATGGATGATTGTGAAAAACTGTAGTTGCCTTAGTATAGAATTATTTTTATTGGAAGTGAAACTGGGTAACGCACTTCAAAACAGTGCTGAGTTGAAAAAGTTATCATTCCCATATGGGTGTCACATGTTTTCTAGTGTATTTTGTATTACTATGGTAGCCTCCCCACCTCGGTAAATACTATCTTCTGATTAGATAAATGTAAGGACAAAGACAATTAGGCAACTGTATGTTAAGTGTGTTGCTCTGTGGCTTAGGATGGAAAGATTGGAATCATTCCCTTATGTTGAATATAATAATTTTTTGATTGTGACACCTTATTTTCTTTTTCAACTCAATAGGAAAATAATAGACCATTTCAGGTGGAAGATATTGGCAGTTTTTAATTTTTAATTGATTCCATACCTTCACTATTGGATGAGTTGATTTATTCCTCTTGATTAAAATCATTGACGGATGATTATGACCTTAGCTCTTTGTGTAGGCTGCTTAAAGTTGGCCTCAATCATGTATTGGATTTCAATGATTTTATGCTATTCTATGTTGTGTATTGTCTATTTTGACCTCTTACATTGTACTATCAAAAATTCTTTTTCATCTAACTAATATTATGAGTGGTAGAATAAACATGATGACATTAATTTGCTTTTTAGGGATAGTCACATTTTTCTGATATCCGCACATAATGTCAATTTCAGGGATCTTCACGGCAGCAATTGCACTTTTTACTGATCTTGATGTTCTCCTCGATCTTGTGTCAATTGGCACACTCTTTGTATTTTACATGGTGGCAAATGCTGTGGTCTATAGACGTTATGTGGTGGCAGGGACAACAAATCCATGGCCAACAGTGTCTTTTCTCCTCTCATTTTCCTTCACTTCCATCATGTTCACCCTTATTTGGAAATGTGTACCAACAGGAGTAGCAAAAGCAGGGATGTTAAGTGCTTGTGGTGTACTTGCTGTAGTAATATTGCAACTTTTTCATTTCACTGTCCCTCAAGCTAGGAAGCCAGAATTTTGGGGTGTACCACTTATGCCATGGATACCAGCAATTTCAATATTTTTGAATTTGTTTTTGCTGGGATCACTTGATGGGCCATCCTATGTTAGATTTGGAGTCTTTTCTGCTGTTGCAGTGCTATTCTATATTTTCTACAGTGTTCATGCTAGCTTTGATGCTGAAGGAGATGGTTCTCTTGGTCAAAAGAATGGTGAAATCCATGTGGAGTCAAAAGAAAGTGTGGACCTGGACCAAAGTTTCAAAGTGTAG
Protein sequence

>MS.gene76250.t1

MTSHGSSFSSLRNYLQAVANTPSRFARRGFSVSTSYEEMSRVRARSGTSMRKTLRWFDLVGFGIGGMVGAGVFVTTGHASRVHAGPAVVLSYAIAGFCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFITGANLIMDYVMSNAAVARSFTGYVGTTVGVSSAKWRITVPSFPKGFNQIDLVAVVVVLLITVVICYSTRESSVVNMILTGLHILFIAFVIVIGFWKGSWKNFTQPANPENPSGFFPHGAAGVFNGAAAVYLSYIGYDAVSTMAEEVKEPVKDIPIGVSGSVIIVTILYCLMAASMCMLLPYDMIDPEAPFSAAFKSDGWGWASRVIGVGASFGILTSLIVAMLGQARYMCVIGRSNVVPAWFAKVHPKTSTPVNASAFLGIFTAAIALFTDLDVLLDLVSIGTLFVFYMVANAVVYRRYVVAGTTNPWPTVSFLLSFSFTSIMFTLIWKCVPTGVAKAGMLSACGVLAVVILQLFHFTVPQARKPEFWGVPLMPWIPAISIFLNLFLLGSLDGPSYVRFGVFSAVAVLFYIFYSVHASFDAEGDGSLGQKNGEIHVESKESVDLDQSFKV