AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene068282


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068282.t1 MTR_4g013260 95.639 321 13 1 1 321 174 493 0.0 623
MS.gene068282.t1 MTR_7g071120 61.561 346 93 11 5 321 161 495 3.12e-132 385
MS.gene068282.t1 MTR_3g031220 63.223 242 66 6 11 233 198 435 5.80e-95 290
MS.gene068282.t1 MTR_5g074400 63.052 249 63 8 11 232 243 489 6.93e-94 290
MS.gene068282.t1 MTR_5g094430 52.227 247 98 5 8 238 63 305 1.71e-77 243
MS.gene068282.t1 MTR_5g094430 52.227 247 98 5 8 238 85 327 2.29e-77 243
MS.gene068282.t1 MTR_3g056100 54.425 226 94 3 8 225 96 320 8.10e-77 242
MS.gene068282.t1 MTR_5g094430 52.227 247 98 5 8 238 197 439 1.49e-76 244
MS.gene068282.t1 MTR_3g056100 54.425 226 94 3 8 225 240 464 4.27e-76 244
MS.gene068282.t1 MTR_5g042920 53.226 248 97 4 8 237 148 394 4.60e-76 239
MS.gene068282.t1 MTR_3g056100 53.112 241 87 5 8 225 96 333 2.67e-75 238
MS.gene068282.t1 MTR_3g056100 53.112 241 87 5 8 225 240 477 1.32e-74 240
MS.gene068282.t1 MTR_7g011820 47.842 278 102 8 8 254 225 490 1.90e-71 230
MS.gene068282.t1 MTR_4g082580 47.266 256 106 5 2 247 126 362 1.92e-71 226
MS.gene068282.t1 MTR_3g031220 60.938 192 52 6 11 183 198 385 5.60e-67 215
MS.gene068282.t1 MTR_3g031220 49.333 75 33 2 154 224 185 258 2.63e-15 76.3
MS.gene068282.t1 MTR_7g080020 43.284 335 118 9 1 270 270 597 5.73e-66 221
MS.gene068282.t1 MTR_7g080000 46.403 278 89 7 1 225 224 494 7.45e-66 219
MS.gene068282.t1 MTR_7g100510 50.000 236 90 5 12 223 190 421 8.87e-64 208
MS.gene068282.t1 MTR_5g097490 40.385 260 129 6 8 255 89 334 3.69e-51 174
MS.gene068282.t1 MTR_3g009470 66.187 139 38 4 101 237 436 567 2.84e-49 174
MS.gene068282.t1 MTR_3g009470 70.769 65 18 1 11 75 280 343 3.98e-24 103
MS.gene068282.t1 MTR_3g009470 56.452 62 27 0 11 72 495 556 1.49e-16 80.9
MS.gene068282.t1 MTR_3g009470 56.667 60 25 1 163 222 280 338 1.44e-13 71.6
MS.gene068282.t1 MTR_5g097500 34.821 224 141 2 11 234 83 301 2.74e-40 143
MS.gene068282.t1 MTR_4g130900 34.959 246 137 5 2 225 177 421 2.39e-37 139
MS.gene068282.t1 MTR_4g130900 51.562 64 31 0 12 75 360 423 2.12e-15 77.0
MS.gene068282.t1 MTR_1g077780 65.823 79 27 0 144 222 43 121 4.40e-32 117
MS.gene068282.t1 MTR_1g077780 50.649 77 35 1 11 87 62 135 8.46e-16 73.6
MS.gene068282.t1 MTR_8g007270 61.842 76 29 0 144 219 135 210 1.94e-28 110
MS.gene068282.t1 MTR_8g007270 54.386 57 26 0 11 67 154 210 1.15e-14 72.4
MS.gene068282.t1 MTR_4g094588 64.865 74 26 0 149 222 164 237 4.28e-28 111
MS.gene068282.t1 MTR_4g094588 52.326 86 38 2 1 86 169 251 5.54e-20 89.4
MS.gene068282.t1 MTR_1g015140 61.842 76 28 1 144 219 84 158 2.90e-27 105
MS.gene068282.t1 MTR_1g015140 53.448 58 27 0 11 68 102 159 2.50e-15 72.8
MS.gene068282.t1 MTR_3g095080 59.459 74 30 0 146 219 127 200 2.20e-26 104
MS.gene068282.t1 MTR_3g095080 50.877 57 28 0 11 67 144 200 2.61e-14 71.2
MS.gene068282.t1 MTR_3g095080 59.459 74 30 0 146 219 151 224 2.49e-26 104
MS.gene068282.t1 MTR_3g095080 50.877 57 28 0 11 67 168 224 2.44e-14 72.0
MS.gene068282.t1 MTR_8g092010 36.646 161 95 2 70 223 8 168 3.32e-26 102
MS.gene068282.t1 MTR_8g092010 53.333 60 28 0 11 70 108 167 5.91e-15 72.4
MS.gene068282.t1 MTR_7g109800 46.281 121 55 2 147 267 129 239 3.41e-26 105
MS.gene068282.t1 MTR_7g109800 48.454 97 48 2 1 96 136 231 1.37e-20 90.5
MS.gene068282.t1 MTR_8g096730 55.422 83 37 0 139 221 46 128 4.35e-26 101
MS.gene068282.t1 MTR_8g096730 53.448 58 27 0 11 68 70 127 1.21e-15 73.2
MS.gene068282.t1 MTR_2g033820 53.261 92 43 0 147 238 187 278 4.43e-26 107
MS.gene068282.t1 MTR_2g033820 52.874 87 38 2 1 87 194 277 3.15e-22 96.3
MS.gene068282.t1 MTR_5g091390 62.162 74 28 0 149 222 143 216 7.03e-26 105
MS.gene068282.t1 MTR_5g091390 55.224 67 30 0 11 77 157 223 3.14e-17 81.3
MS.gene068282.t1 MTR_3g104750 55.263 76 34 0 144 219 85 160 2.44e-25 100
MS.gene068282.t1 MTR_3g104750 53.448 58 27 0 11 68 104 161 1.87e-16 75.9
MS.gene068282.t1 MTR_1g086790 57.895 76 32 0 147 222 142 217 2.86e-25 103
MS.gene068282.t1 MTR_1g086790 50.000 86 42 1 1 86 149 233 1.47e-19 87.8
MS.gene068282.t1 MTR_8g092140 58.667 75 30 1 146 219 142 216 5.56e-25 100
MS.gene068282.t1 MTR_8g092140 50.877 57 28 0 11 67 160 216 2.11e-14 72.0
MS.gene068282.t1 MTR_5g043880 56.962 79 34 0 141 219 102 180 6.47e-25 102
MS.gene068282.t1 MTR_5g043880 58.209 67 27 1 1 67 115 180 1.13e-16 79.0
MS.gene068282.t1 MTR_7g079010 60.526 76 30 0 144 219 122 197 7.55e-25 100
MS.gene068282.t1 MTR_7g079010 56.897 58 25 0 11 68 141 198 2.41e-16 77.0
MS.gene068282.t1 MTR_7g028415 63.235 68 25 0 154 221 84 151 8.11e-25 99.0
MS.gene068282.t1 MTR_7g028415 49.206 63 32 0 11 73 93 155 4.40e-15 72.4
MS.gene068282.t1 MTR_7g028710 63.235 68 25 0 154 221 84 151 8.11e-25 99.0
MS.gene068282.t1 MTR_7g028710 49.206 63 32 0 11 73 93 155 4.40e-15 72.4
MS.gene068282.t1 MTR_3g009470 70.769 65 18 1 11 75 280 343 3.47e-24 102
MS.gene068282.t1 MTR_3g009470 61.176 85 26 3 101 183 436 515 4.40e-21 94.0
MS.gene068282.t1 MTR_3g009470 56.667 60 25 1 163 222 280 338 1.20e-13 71.6
MS.gene068282.t1 MTR_4g132430 51.899 79 37 1 145 222 109 187 4.89e-23 98.2
MS.gene068282.t1 MTR_4g132430 46.667 60 31 1 12 70 128 187 3.34e-13 69.7
MS.gene068282.t1 MTR_3g095040 55.405 74 33 0 149 222 104 177 5.50e-23 94.7
MS.gene068282.t1 MTR_3g095040 49.231 65 33 0 6 70 113 177 2.37e-14 71.2
MS.gene068282.t1 MTR_7g110720 50.000 84 41 1 140 222 166 249 9.92e-23 97.8
MS.gene068282.t1 MTR_7g110720 43.478 69 38 1 12 79 190 258 7.27e-14 72.0
MS.gene068282.t1 MTR_7g110720 50.000 84 41 1 140 222 193 276 1.10e-22 98.2
MS.gene068282.t1 MTR_7g110720 43.478 69 38 1 12 79 217 285 7.74e-14 72.0
MS.gene068282.t1 MTR_4g094412 51.899 79 37 1 147 224 227 305 1.12e-22 98.6
MS.gene068282.t1 MTR_4g094412 51.667 60 28 1 12 70 244 303 1.67e-14 74.3
MS.gene068282.t1 MTR_2g023930 51.899 79 37 1 145 222 287 365 1.19e-22 98.6
MS.gene068282.t1 MTR_2g023930 48.333 60 30 1 12 70 306 365 7.90e-14 72.4
MS.gene068282.t1 MTR_4g094412 51.899 79 37 1 147 224 218 296 1.19e-22 98.2
MS.gene068282.t1 MTR_4g094412 51.667 60 28 1 12 70 235 294 1.59e-14 74.3
MS.gene068282.t1 MTR_3g053330 44.211 95 51 2 146 238 234 328 1.21e-22 98.2
MS.gene068282.t1 MTR_3g053330 42.029 69 39 1 12 79 252 320 1.36e-12 68.6
MS.gene068282.t1 MTR_5g074200 48.077 104 51 3 4 105 213 315 1.28e-22 96.7
MS.gene068282.t1 MTR_5g074200 53.333 60 27 1 163 222 220 278 9.97e-13 68.2
MS.gene068282.t1 MTR_4g132430 51.899 79 37 1 145 222 243 321 2.28e-22 97.4
MS.gene068282.t1 MTR_4g132430 46.667 60 31 1 12 70 262 321 6.20e-13 69.7
MS.gene068282.t1 MTR_4g107970 51.899 79 37 1 146 223 161 239 3.04e-22 97.4
MS.gene068282.t1 MTR_4g107970 48.333 60 30 1 12 70 179 238 7.97e-13 69.3
MS.gene068282.t1 MTR_4g107970 50.633 79 38 1 146 223 238 316 4.87e-22 97.1
MS.gene068282.t1 MTR_4g107970 48.333 60 30 1 12 70 256 315 1.13e-12 68.9
MS.gene068282.t1 MTR_2g088000 51.899 79 37 1 145 222 331 409 5.12e-22 97.1
MS.gene068282.t1 MTR_2g088000 45.000 60 32 1 12 70 350 409 5.04e-11 63.9
MS.gene068282.t1 MTR_4g122530 55.405 74 33 0 150 223 195 268 6.61e-22 95.9
MS.gene068282.t1 MTR_4g122530 50.000 76 37 1 11 86 208 282 7.88e-16 78.2
MS.gene068282.t1 MTR_1g009613 53.165 79 33 2 144 221 246 321 9.75e-21 91.7
MS.gene068282.t1 MTR_1g009613 50.877 57 27 1 12 67 263 319 1.59e-11 64.7
MS.gene068282.t1 MTR_4g094908 50.633 79 35 2 144 221 250 325 9.90e-21 91.3
MS.gene068282.t1 MTR_4g094908 52.632 57 26 1 12 67 267 323 5.07e-14 72.0
MS.gene068282.t1 MTR_2g105060 41.525 118 53 4 140 252 69 175 1.46e-20 89.4
MS.gene068282.t1 MTR_2g105060 49.231 65 32 1 11 74 94 158 2.42e-16 77.4
MS.gene068282.t1 MTR_1g078260 46.667 105 54 2 117 219 200 304 1.84e-20 92.0
MS.gene068282.t1 MTR_1g078260 50.000 58 28 1 11 67 247 304 1.81e-11 65.1
MS.gene068282.t1 MTR_2g105060 41.525 118 53 4 140 252 144 250 1.92e-20 90.1
MS.gene068282.t1 MTR_2g105060 49.231 65 32 1 11 74 169 233 3.25e-16 78.2
MS.gene068282.t1 MTR_2g045360 45.361 97 45 3 142 233 193 286 3.07e-20 90.9
MS.gene068282.t1 MTR_2g045360 42.647 68 38 1 12 78 212 279 1.65e-11 65.1
MS.gene068282.t1 MTR_4g049790 49.367 79 39 1 145 222 294 372 4.41e-20 91.3
MS.gene068282.t1 MTR_4g049790 42.667 75 38 2 8 77 305 379 8.53e-12 66.2
MS.gene068282.t1 MTR_5g016610 53.333 75 34 1 150 223 186 260 4.80e-20 88.6
MS.gene068282.t1 MTR_5g016610 52.632 57 26 1 12 67 200 256 2.16e-13 69.7
MS.gene068282.t1 MTR_7g009730 50.649 77 37 1 146 221 202 278 6.99e-20 90.5
MS.gene068282.t1 MTR_7g009730 51.724 58 27 1 12 68 220 277 1.09e-13 72.0
MS.gene068282.t1 MTR_6g086555 52.632 76 35 1 149 223 192 267 7.75e-20 89.7
MS.gene068282.t1 MTR_6g086555 47.692 65 33 1 12 75 207 271 2.43e-14 73.6
MS.gene068282.t1 MTR_4g049760 40.708 113 53 2 150 248 277 389 4.40e-19 88.2
MS.gene068282.t1 MTR_3g106060 35.570 149 73 4 89 219 52 195 4.81e-19 85.9
MS.gene068282.t1 MTR_3g106060 48.276 58 29 1 11 67 138 195 1.72e-13 70.1
MS.gene068282.t1 MTR_4g127040 49.351 77 35 2 144 219 229 302 6.55e-18 83.2
MS.gene068282.t1 MTR_4g127040 41.333 75 39 2 12 85 246 316 6.86e-11 62.8
MS.gene068282.t1 MTR_4g007060 41.748 103 45 3 161 254 126 222 1.09e-17 82.0
MS.gene068282.t1 MTR_4g007060 35.766 137 82 3 11 141 128 264 3.39e-16 77.8
MS.gene068282.t1 MTR_1g070455 49.351 77 35 2 144 219 277 350 1.10e-17 83.2
MS.gene068282.t1 MTR_1g070455 50.847 59 28 1 12 69 294 352 4.38e-13 69.7
MS.gene068282.t1 MTR_7g062220 59.649 57 23 0 163 219 124 180 1.60e-17 82.0
MS.gene068282.t1 MTR_7g062220 61.404 57 22 0 11 67 124 180 1.97e-17 81.6
MS.gene068282.t1 MTR_4g007060 41.748 103 45 3 161 254 160 256 1.65e-17 82.0
MS.gene068282.t1 MTR_4g007060 35.766 137 82 3 11 141 162 298 5.58e-16 77.8
MS.gene068282.t1 MTR_1g013760 41.304 92 48 3 134 219 106 197 1.64e-16 78.6
MS.gene068282.t1 MTR_1g013760 47.368 57 29 1 12 67 141 197 9.36e-13 67.8
MS.gene068282.t1 MTR_1g013790 41.758 91 52 1 151 240 89 179 2.39e-16 77.8
MS.gene068282.t1 MTR_1g013790 45.000 60 32 1 12 70 102 161 2.44e-11 63.5
MS.gene068282.t1 MTR_4g047580 34.746 118 63 2 145 248 263 380 3.27e-15 76.6
MS.gene068282.t1 MTR_8g087000 32.192 146 66 4 164 284 78 215 3.73e-15 74.3
MS.gene068282.t1 MTR_8g087000 43.478 69 38 1 3 70 69 137 4.37e-11 62.4
MS.gene068282.t1 MTR_8g087000 32.192 146 66 4 164 284 77 214 3.89e-15 74.3
MS.gene068282.t1 MTR_8g087000 43.478 69 38 1 3 70 68 136 5.43e-11 62.4
MS.gene068282.t1 MTR_1g099600 35.577 104 65 2 144 246 167 269 4.52e-15 75.1
MS.gene068282.t1 MTR_1g099600 45.000 60 32 1 12 70 186 245 1.26e-11 64.7
MS.gene068282.t1 MTR_7g109600 50.000 62 30 1 164 224 54 115 6.13e-15 73.9
MS.gene068282.t1 MTR_7g109600 46.154 78 39 2 12 88 54 129 8.58e-14 70.5
MS.gene068282.t1 MTR_2g032030 41.573 89 50 2 156 243 261 348 9.04e-15 75.1
MS.gene068282.t1 MTR_2g032030 49.254 67 31 2 12 77 268 332 3.63e-12 67.4
MS.gene068282.t1 MTR_3g108960 43.590 78 43 1 144 220 295 372 9.15e-15 74.7
MS.gene068282.t1 MTR_2g032030 41.573 89 50 2 156 243 261 348 1.36e-14 74.3
MS.gene068282.t1 MTR_2g032030 49.254 67 31 2 12 77 268 332 3.81e-12 67.0
MS.gene068282.t1 MTR_2g083870 35.780 109 69 1 164 271 81 189 1.86e-14 72.4
MS.gene068282.t1 MTR_8g028565 42.391 92 41 3 164 254 156 236 4.01e-14 72.4
MS.gene068282.t1 MTR_8g028565 41.791 67 38 1 5 70 149 215 5.14e-11 63.2
MS.gene068282.t1 MTR_0117s0040 45.455 77 39 2 144 219 57 131 4.81e-14 71.2
MS.gene068282.t1 MTR_8g098945 49.231 65 32 1 162 225 128 192 6.53e-14 71.2
MS.gene068282.t1 MTR_8g098945 46.667 60 31 1 12 70 130 189 3.03e-12 66.2
MS.gene068282.t1 MTR_2g016770 43.902 82 38 2 164 244 36 110 9.64e-14 69.7
MS.gene068282.t1 MTR_1g077760 67.500 40 13 0 144 183 95 134 1.06e-13 67.4
MS.gene068282.t1 MTR_2g024350 28.049 164 111 2 158 314 3 166 1.35e-13 69.3
MS.gene068282.t1 MTR_2g024350 46.154 65 34 1 11 74 8 72 2.01e-11 63.2
MS.gene068282.t1 MTR_2g016770 43.902 82 38 2 164 244 28 102 1.35e-13 68.9
MS.gene068282.t1 MTR_8g069935 38.053 113 64 3 11 122 331 438 1.52e-13 71.2
MS.gene068282.t1 MTR_8g069935 40.845 71 38 2 163 232 331 398 3.96e-12 67.0
MS.gene068282.t1 MTR_7g079040 51.667 60 28 1 164 222 155 214 3.61e-13 69.7
MS.gene068282.t1 MTR_2g024380 48.485 66 33 1 158 222 246 311 5.46e-13 69.7
MS.gene068282.t1 MTR_2g024380 46.154 65 34 1 11 74 251 315 6.09e-11 63.5
MS.gene068282.t1 MTR_6g046600 64.151 53 18 1 27 79 18 69 8.84e-13 64.7
MS.gene068282.t1 MTR_8g067635 41.667 84 39 2 161 243 347 421 2.71e-12 67.8
MS.gene068282.t1 MTR_8g067635 46.875 64 33 1 8 70 346 409 4.00e-12 67.0
MS.gene068282.t1 MTR_5g044695 52.174 46 22 0 145 190 59 104 2.81e-12 62.8
MS.gene068282.t1 MTR_8g067650 47.541 61 31 1 11 70 339 399 4.93e-12 67.0
MS.gene068282.t1 MTR_8g067650 41.667 84 39 2 161 243 337 411 6.03e-12 66.6
MS.gene068282.t1 MTR_4g021780 50.000 66 31 2 6 71 18 81 6.03e-12 62.4
MS.gene068282.t1 MTR_3g090860 40.789 76 40 2 162 234 132 205 8.65e-12 65.5
MS.gene068282.t1 MTR_3g090860 48.276 58 27 2 11 65 133 190 4.65e-11 63.5
MS.gene068282.t1 MTR_5g067680 44.828 58 29 1 11 65 202 259 1.13e-11 65.5
MS.gene068282.t1 MTR_8g099350 50.000 58 26 1 11 65 132 189 2.41e-11 64.3
MS.gene068282.t1 MTR_8g099350 48.276 58 27 1 163 217 132 189 8.96e-11 62.8
MS.gene068282.t1 MTR_3g095080 58.537 41 17 0 146 186 151 191 5.25e-11 61.2
MS.gene068282.t1 MTR_6g053200 39.437 71 42 1 163 232 330 400 5.68e-11 63.5
MS.gene068282.t1 MTR_6g038890 52.174 46 22 0 145 190 170 215 7.15e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068282.t1 AT2G38470 55.063 316 83 13 5 287 179 468 7.79e-95 291
MS.gene068282.t1 AT5G07100 62.100 219 46 6 8 225 114 296 1.05e-81 250
MS.gene068282.t1 AT5G07100 40.426 94 45 1 149 231 92 185 8.17e-15 74.3
MS.gene068282.t1 AT5G07100 62.100 219 46 6 8 225 21 203 1.53e-81 246
MS.gene068282.t1 AT5G07100 40.217 92 44 1 151 231 1 92 4.35e-14 70.9
MS.gene068282.t1 AT5G07100 62.100 219 46 6 8 225 21 203 1.53e-81 246
MS.gene068282.t1 AT5G07100 40.217 92 44 1 151 231 1 92 4.35e-14 70.9
MS.gene068282.t1 AT5G07100 62.100 219 46 6 8 225 21 203 1.53e-81 246
MS.gene068282.t1 AT5G07100 40.217 92 44 1 151 231 1 92 4.35e-14 70.9
MS.gene068282.t1 AT5G07100 62.100 219 46 6 8 225 21 203 1.53e-81 246
MS.gene068282.t1 AT5G07100 40.217 92 44 1 151 231 1 92 4.35e-14 70.9
MS.gene068282.t1 AT1G13960 54.694 245 79 4 8 222 73 315 2.28e-77 241
MS.gene068282.t1 AT4G26640 53.689 244 93 5 11 235 35 277 5.33e-77 240
MS.gene068282.t1 AT4G26640 54.839 62 27 1 161 222 33 93 2.40e-13 70.5
MS.gene068282.t1 AT4G26640 53.689 244 93 5 11 235 35 277 5.33e-77 240
MS.gene068282.t1 AT4G26640 54.839 62 27 1 161 222 33 93 2.40e-13 70.5
MS.gene068282.t1 AT4G26640 53.689 244 93 5 11 235 35 277 5.33e-77 240
MS.gene068282.t1 AT4G26640 54.839 62 27 1 161 222 33 93 2.40e-13 70.5
MS.gene068282.t1 AT4G26640 53.689 244 93 5 11 235 35 277 5.33e-77 240
MS.gene068282.t1 AT4G26640 54.839 62 27 1 161 222 33 93 2.40e-13 70.5
MS.gene068282.t1 AT1G13960 55.102 245 78 5 8 222 226 468 1.20e-76 243
MS.gene068282.t1 AT2G03340 52.852 263 100 8 8 252 247 503 1.50e-76 243
MS.gene068282.t1 AT2G03340 42.478 113 53 2 163 275 250 350 3.22e-16 79.7
MS.gene068282.t1 AT4G26640 53.689 244 93 5 11 235 139 381 2.42e-76 242
MS.gene068282.t1 AT4G26640 54.839 62 27 1 161 222 137 197 2.01e-13 71.2
MS.gene068282.t1 AT4G26640 53.689 244 93 5 11 235 171 413 3.35e-76 243
MS.gene068282.t1 AT4G26640 54.839 62 27 1 161 222 169 229 1.91e-13 71.2
MS.gene068282.t1 AT4G26640 53.689 244 93 5 11 235 211 453 7.52e-76 243
MS.gene068282.t1 AT4G26640 54.839 62 27 1 161 222 209 269 1.78e-13 71.2
MS.gene068282.t1 AT2G30250 54.825 228 79 5 12 222 167 387 3.99e-73 231
MS.gene068282.t1 AT2G30250 56.250 64 28 0 12 75 329 392 1.27e-16 80.1
MS.gene068282.t1 AT5G56270 49.645 282 70 8 11 225 273 549 6.59e-72 235
MS.gene068282.t1 AT3G01080 55.349 215 83 5 8 222 202 403 2.20e-66 215
MS.gene068282.t1 AT3G01080 55.349 215 83 5 8 222 164 365 3.44e-66 214
MS.gene068282.t1 AT4G26440 46.332 259 93 6 11 225 178 434 3.67e-63 209
MS.gene068282.t1 AT2G37260 42.751 269 118 3 8 242 80 346 7.47e-56 185
MS.gene068282.t1 AT2G37260 42.751 269 118 3 8 242 82 348 7.95e-56 185
MS.gene068282.t1 AT2G37260 42.751 269 118 3 8 242 162 428 4.26e-55 185
MS.gene068282.t1 AT2G04880 42.683 246 115 5 6 228 106 348 6.60e-55 186
MS.gene068282.t1 AT2G04880 39.855 276 104 7 6 228 106 372 2.86e-52 179
MS.gene068282.t1 AT2G04880 43.000 100 45 2 12 111 308 395 1.47e-16 80.5
MS.gene068282.t1 AT4G30935 41.102 236 116 8 7 225 164 393 3.42e-44 157
MS.gene068282.t1 AT4G30935 41.667 96 49 1 12 107 332 420 2.49e-16 79.7
MS.gene068282.t1 AT4G12020 43.564 202 83 5 8 183 465 661 6.98e-37 140
MS.gene068282.t1 AT4G12020 49.180 61 30 1 162 222 467 526 5.13e-11 64.3
MS.gene068282.t1 AT4G12020 43.415 205 79 5 8 183 465 661 6.98e-37 140
MS.gene068282.t1 AT4G12020 49.180 61 30 1 162 222 467 526 5.10e-11 64.3
MS.gene068282.t1 AT4G12020 43.415 205 79 5 8 183 465 661 6.98e-37 140
MS.gene068282.t1 AT4G12020 49.180 61 30 1 162 222 467 526 5.10e-11 64.3
MS.gene068282.t1 AT4G12020 43.564 202 83 5 8 183 465 661 7.07e-37 140
MS.gene068282.t1 AT4G12020 49.180 61 30 1 162 222 467 526 4.97e-11 64.3
MS.gene068282.t1 AT4G12020 43.564 202 83 5 8 183 465 661 7.25e-37 140
MS.gene068282.t1 AT4G12020 49.180 61 30 1 162 222 467 526 5.18e-11 64.3
MS.gene068282.t1 AT4G12020 43.564 202 83 5 8 183 465 661 7.49e-37 140
MS.gene068282.t1 AT4G12020 49.180 61 30 1 162 222 467 526 4.97e-11 64.3
MS.gene068282.t1 AT4G12020 43.564 202 83 5 8 183 465 661 7.49e-37 140
MS.gene068282.t1 AT4G12020 49.180 61 30 1 162 222 467 526 4.97e-11 64.3
MS.gene068282.t1 AT4G12020 43.564 202 83 5 8 183 465 661 7.98e-37 140
MS.gene068282.t1 AT4G12020 49.180 61 30 1 162 222 467 526 5.33e-11 64.3
MS.gene068282.t1 AT4G12020 43.564 202 83 5 8 183 465 661 8.14e-37 140
MS.gene068282.t1 AT4G12020 49.180 61 30 1 162 222 467 526 5.33e-11 64.3
MS.gene068282.t1 AT4G12020 43.564 202 83 5 8 183 398 594 9.25e-37 140
MS.gene068282.t1 AT4G12020 49.180 61 30 1 162 222 400 459 5.96e-11 64.3
MS.gene068282.t1 AT4G12020 43.564 202 83 5 8 183 465 661 1.10e-36 140
MS.gene068282.t1 AT4G12020 49.180 61 30 1 162 222 467 526 6.28e-11 63.9
MS.gene068282.t1 AT2G44745 47.748 111 57 1 109 219 92 201 1.15e-28 110
MS.gene068282.t1 AT2G44745 54.386 57 26 0 11 67 145 201 1.08e-14 72.4
MS.gene068282.t1 AT4G18170 63.158 76 28 0 147 222 156 231 2.20e-28 112
MS.gene068282.t1 AT4G18170 57.143 70 29 1 1 70 163 231 2.03e-18 84.7
MS.gene068282.t1 AT1G29860 64.474 76 27 0 147 222 120 195 7.50e-28 110
MS.gene068282.t1 AT1G29860 50.000 82 40 1 1 82 127 207 1.92e-19 87.0
MS.gene068282.t1 AT1G55600 60.494 81 32 0 142 222 286 366 3.73e-27 111
MS.gene068282.t1 AT1G55600 54.930 71 28 1 6 72 298 368 2.07e-18 85.9
MS.gene068282.t1 AT4G39410 61.842 76 29 0 144 219 204 279 5.11e-27 108
MS.gene068282.t1 AT4G39410 44.872 78 42 1 11 87 223 300 5.98e-16 77.4
MS.gene068282.t1 AT5G46350 59.740 77 31 0 149 225 169 245 7.81e-27 108
MS.gene068282.t1 AT5G46350 57.576 66 26 1 11 76 183 246 1.24e-17 82.4
MS.gene068282.t1 AT5G26170 60.000 70 28 0 150 219 100 169 4.14e-26 102
MS.gene068282.t1 AT5G26170 54.386 57 26 0 11 67 113 169 1.12e-15 74.3
MS.gene068282.t1 AT5G49520 59.740 77 31 0 147 223 205 281 1.20e-25 106
MS.gene068282.t1 AT5G49520 56.250 64 28 0 11 74 221 284 4.99e-18 84.3
MS.gene068282.t1 AT2G47260 50.000 106 49 2 147 248 158 263 1.37e-25 105
MS.gene068282.t1 AT2G47260 51.351 74 35 1 1 74 165 237 2.60e-16 79.0
MS.gene068282.t1 AT5G13080 49.000 100 43 1 130 221 26 125 1.82e-25 99.8
MS.gene068282.t1 AT5G13080 48.438 64 33 0 11 74 67 130 3.95e-15 72.0
MS.gene068282.t1 AT3G01970 62.500 72 27 0 150 221 52 123 2.41e-25 99.8
MS.gene068282.t1 AT3G01970 52.632 57 27 0 11 67 65 121 3.62e-14 69.3
MS.gene068282.t1 AT5G41570 57.895 76 32 0 144 219 79 154 2.70e-25 100
MS.gene068282.t1 AT5G41570 53.448 58 27 0 11 68 98 155 6.42e-16 75.1
MS.gene068282.t1 AT1G64000 55.696 79 35 0 141 219 92 170 3.47e-25 100
MS.gene068282.t1 AT1G64000 53.448 58 27 0 11 68 114 171 3.40e-16 76.3
MS.gene068282.t1 AT1G69310 59.459 74 30 0 146 219 130 203 4.21e-25 102
MS.gene068282.t1 AT1G69310 63.158 57 21 0 11 67 147 203 1.15e-17 82.0
MS.gene068282.t1 AT1G69310 59.459 74 30 0 146 219 130 203 4.21e-25 102
MS.gene068282.t1 AT1G69310 63.158 57 21 0 11 67 147 203 1.15e-17 82.0
MS.gene068282.t1 AT1G69310 59.459 74 30 0 146 219 130 203 4.21e-25 102
MS.gene068282.t1 AT1G69310 63.158 57 21 0 11 67 147 203 1.15e-17 82.0
MS.gene068282.t1 AT5G64810 59.155 71 29 0 150 220 97 167 3.01e-24 98.2
MS.gene068282.t1 AT5G64810 52.632 57 27 0 11 67 110 166 2.25e-14 70.9
MS.gene068282.t1 AT4G04450 41.221 131 68 2 145 274 180 302 5.55e-24 101
MS.gene068282.t1 AT4G04450 43.478 69 38 1 12 79 199 267 8.83e-14 72.0
MS.gene068282.t1 AT4G04450 41.221 131 68 2 145 274 274 396 1.70e-23 101
MS.gene068282.t1 AT4G04450 43.478 69 38 1 12 79 293 361 1.28e-13 71.6
MS.gene068282.t1 AT2G46130 56.579 76 33 0 144 219 11 86 2.08e-23 93.2
MS.gene068282.t1 AT2G46130 55.172 58 26 0 11 68 30 87 2.68e-17 76.6
MS.gene068282.t1 AT5G15130 53.165 79 36 1 146 223 168 246 5.56e-23 99.4
MS.gene068282.t1 AT5G15130 48.333 60 30 1 12 70 186 245 3.66e-12 67.4
MS.gene068282.t1 AT5G15130 53.165 79 36 1 146 223 210 288 7.82e-23 99.4
MS.gene068282.t1 AT5G15130 48.333 60 30 1 12 70 228 287 4.41e-12 67.0
MS.gene068282.t1 AT1G62300 53.165 79 36 1 145 222 294 372 8.38e-23 99.4
MS.gene068282.t1 AT1G62300 48.333 60 30 1 12 70 313 372 6.65e-13 69.7
MS.gene068282.t1 AT1G68150 48.837 86 43 1 147 231 219 304 9.14e-23 97.8
MS.gene068282.t1 AT1G68150 51.667 60 28 1 12 70 236 295 1.92e-14 73.6
MS.gene068282.t1 AT4G22070 53.165 79 36 1 145 222 279 357 1.22e-22 98.6
MS.gene068282.t1 AT4G22070 48.333 60 30 1 12 70 298 357 2.18e-12 68.2
MS.gene068282.t1 AT4G22070 53.165 79 36 1 145 222 279 357 1.22e-22 98.6
MS.gene068282.t1 AT4G22070 48.333 60 30 1 12 70 298 357 2.18e-12 68.2
MS.gene068282.t1 AT4G22070 53.165 79 36 1 145 222 279 357 1.22e-22 98.6
MS.gene068282.t1 AT4G22070 48.333 60 30 1 12 70 298 357 2.18e-12 68.2
MS.gene068282.t1 AT4G22070 53.165 79 36 1 145 222 279 357 1.22e-22 98.6
MS.gene068282.t1 AT4G22070 48.333 60 30 1 12 70 298 357 2.18e-12 68.2
MS.gene068282.t1 AT1G18860 53.846 78 35 1 146 222 222 299 2.30e-22 97.8
MS.gene068282.t1 AT1G18860 48.333 60 30 1 12 70 240 299 1.11e-11 65.9
MS.gene068282.t1 AT3G62340 57.143 77 33 0 147 223 102 178 3.92e-22 94.4
MS.gene068282.t1 AT3G62340 47.826 69 36 0 11 79 118 186 7.11e-16 77.0
MS.gene068282.t1 AT3G01080 67.188 64 20 1 8 71 202 264 4.15e-22 95.1
MS.gene068282.t1 AT3G01080 53.968 63 28 1 163 225 205 266 2.64e-13 70.1
MS.gene068282.t1 AT4G31550 50.538 93 41 3 144 234 229 318 3.47e-21 92.4
MS.gene068282.t1 AT4G31550 52.632 57 26 1 12 67 246 302 9.50e-13 68.2
MS.gene068282.t1 AT4G31550 50.538 93 41 3 144 234 230 319 3.52e-21 92.4
MS.gene068282.t1 AT4G31550 52.632 57 26 1 12 67 247 303 9.75e-13 68.2
MS.gene068282.t1 AT2G23320 49.367 79 36 2 144 221 224 299 2.59e-20 90.1
MS.gene068282.t1 AT2G23320 50.877 57 27 1 12 67 241 297 6.22e-13 68.9
MS.gene068282.t1 AT1G69310 55.405 74 29 1 146 219 130 199 2.79e-20 89.4
MS.gene068282.t1 AT1G69310 57.895 57 20 1 11 67 147 199 4.81e-13 68.9
MS.gene068282.t1 AT4G01720 50.649 77 37 1 147 222 223 299 2.97e-20 91.3
MS.gene068282.t1 AT4G01720 48.333 60 30 1 12 70 240 299 1.73e-13 71.2
MS.gene068282.t1 AT4G24240 53.333 75 34 1 150 223 268 342 3.00e-20 90.5
MS.gene068282.t1 AT2G24570 54.545 77 31 2 144 219 227 300 1.49e-19 87.8
MS.gene068282.t1 AT2G24570 52.632 57 26 1 12 67 244 300 1.09e-12 68.2
MS.gene068282.t1 AT5G43290 63.158 57 21 0 11 67 114 170 3.05e-19 86.3
MS.gene068282.t1 AT5G43290 55.932 59 26 0 161 219 112 170 1.19e-15 76.3
MS.gene068282.t1 AT1G80840 38.983 118 56 3 161 262 144 261 3.07e-19 86.7
MS.gene068282.t1 AT1G80840 50.820 61 29 1 11 70 146 206 7.82e-16 77.0
MS.gene068282.t1 AT5G28650 50.649 77 34 2 144 219 246 319 6.08e-19 86.3
MS.gene068282.t1 AT5G28650 47.368 57 29 1 12 67 263 319 3.00e-11 63.9
MS.gene068282.t1 AT2G21900 50.000 74 34 1 152 222 95 168 1.13e-18 83.2
MS.gene068282.t1 AT2G21900 43.056 72 41 0 2 73 100 171 3.49e-16 76.3
MS.gene068282.t1 AT2G46130 52.632 76 32 1 144 219 11 82 1.30e-18 80.1
MS.gene068282.t1 AT2G46130 50.000 58 25 1 11 68 30 83 1.15e-12 63.9
MS.gene068282.t1 AT3G04670 50.649 77 34 2 144 219 246 319 1.71e-18 85.1
MS.gene068282.t1 AT3G04670 49.123 57 28 1 12 67 263 319 6.20e-12 65.9
MS.gene068282.t1 AT2G30590 36.000 150 81 4 85 219 221 370 3.89e-18 84.7
MS.gene068282.t1 AT2G30590 50.847 59 28 1 12 69 314 372 6.87e-13 69.3
MS.gene068282.t1 AT4G23550 43.678 87 48 1 152 237 129 215 1.52e-17 82.0
MS.gene068282.t1 AT1G69810 35.659 129 67 3 111 223 79 207 3.12e-17 81.3
MS.gene068282.t1 AT1G69810 35.659 129 67 3 111 223 137 265 4.99e-17 81.3
MS.gene068282.t1 AT2G25000 48.387 62 31 1 162 222 102 163 1.49e-16 77.8
MS.gene068282.t1 AT2G25000 41.333 75 43 1 3 76 95 169 6.64e-14 70.5
MS.gene068282.t1 AT2G25000 48.387 62 31 1 162 222 102 163 1.49e-16 77.8
MS.gene068282.t1 AT2G25000 41.333 75 43 1 3 76 95 169 6.64e-14 70.5
MS.gene068282.t1 AT2G25000 48.387 62 31 1 162 222 124 185 2.32e-16 77.8
MS.gene068282.t1 AT2G25000 41.333 75 43 1 3 76 117 191 7.83e-14 70.5
MS.gene068282.t1 AT4G31800 43.836 73 40 1 151 222 99 171 2.73e-16 77.4
MS.gene068282.t1 AT4G31800 42.254 71 40 1 11 80 111 181 3.68e-14 71.6
MS.gene068282.t1 AT2G25000 48.387 62 31 1 162 222 145 206 3.42e-16 77.8
MS.gene068282.t1 AT2G25000 41.333 75 43 1 3 76 138 212 1.35e-13 70.1
MS.gene068282.t1 AT4G31800 43.836 73 40 1 151 222 164 236 4.20e-16 77.8
MS.gene068282.t1 AT4G31800 42.254 71 40 1 11 80 176 246 5.34e-14 72.0
MS.gene068282.t1 AT1G29280 50.820 61 29 1 164 223 75 135 4.75e-15 74.3
MS.gene068282.t1 AT1G29280 46.970 66 34 1 12 76 75 140 2.84e-13 68.9
MS.gene068282.t1 AT5G52830 35.294 119 66 3 144 261 147 255 5.42e-15 75.1
MS.gene068282.t1 AT5G52830 48.333 60 30 1 12 70 166 225 1.95e-11 64.7
MS.gene068282.t1 AT4G01250 52.381 63 29 1 164 225 129 191 6.42e-15 74.3
MS.gene068282.t1 AT4G01250 31.304 115 71 2 12 118 129 243 3.64e-12 66.2
MS.gene068282.t1 AT1G30650 40.741 81 47 1 146 225 200 280 5.66e-14 72.8
MS.gene068282.t1 AT1G30650 45.714 70 37 1 2 70 208 277 4.92e-12 66.6
MS.gene068282.t1 AT2G34830 40.741 81 47 1 146 225 207 287 7.66e-14 72.4
MS.gene068282.t1 AT2G34830 45.455 77 39 2 2 77 215 289 2.00e-12 67.8
MS.gene068282.t1 AT2G34830 40.741 81 47 1 146 225 198 278 7.69e-14 72.0
MS.gene068282.t1 AT2G34830 45.455 77 39 2 2 77 206 280 2.05e-12 67.8
MS.gene068282.t1 AT3G58710 45.946 74 33 2 164 236 72 139 5.67e-13 68.6
MS.gene068282.t1 AT3G58710 43.421 76 39 2 12 86 72 144 6.39e-11 62.4
MS.gene068282.t1 AT3G58710 45.946 74 33 2 164 236 71 138 5.83e-13 68.6
MS.gene068282.t1 AT3G58710 43.421 76 39 2 12 86 71 143 7.10e-11 62.4
MS.gene068282.t1 AT5G45050 49.206 63 31 1 164 225 1181 1243 3.47e-12 67.8
MS.gene068282.t1 AT5G45050 49.206 63 31 1 164 225 1153 1215 3.48e-12 67.8
MS.gene068282.t1 AT5G45050 49.206 63 31 1 164 225 1042 1104 3.62e-12 67.8
MS.gene068282.t1 AT5G45260 42.683 82 42 2 10 88 1207 1286 5.85e-12 67.0

Find 49 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGGCTTCTGATATTTCTT+TGG 0.193955 4.4:-86905685 MS.gene068282:CDS
TTCTTCTTCATTGAGCAAAT+TGG 0.201399 4.4:+86905846 None:intergenic
GTGCACTTGTAATAACTTCT+TGG 0.242130 4.4:+86905873 None:intergenic
GAAGAAAGTTGAAAGGTCTT+TGG 0.287157 4.4:-86905829 MS.gene068282:CDS
GTACTGATCTTACCATCTTT+TGG 0.302504 4.4:+86905590 None:intergenic
ATGGCTTCTGATATTTCTTT+GGG 0.307243 4.4:-86905684 MS.gene068282:CDS
TTATTTGCATACCTTGGGTT+TGG 0.317158 4.4:+86904226 None:intergenic
GGATATAGGTGGAGGAAATA+TGG 0.321679 4.4:-86904271 MS.gene068282:CDS
TTCATCATGCAACAACTCTA+TGG 0.324697 4.4:-86905703 MS.gene068282:CDS
GGATACAGGTGGAGAAAATA+TGG 0.326573 4.4:-86905924 MS.gene068282:CDS
GTCACTGCTGAAGGCCTTAT+AGG 0.327921 4.4:+86903780 None:intergenic
TATGGACAGAAAGTAGTTAA+AGG 0.332389 4.4:-86904253 MS.gene068282:CDS
AGCCGAGTATTGTTCCGAAT+TGG 0.406866 4.4:+86903620 None:intergenic
ATTACTCAAATAGTATATAA+AGG 0.407318 4.4:-86905795 MS.gene068282:CDS
TTCTGATATTTCTTTGGGAG+AGG 0.411159 4.4:-86905679 MS.gene068282:CDS
ATATTCTTGATGATGGATAT+AGG 0.416334 4.4:-86904285 MS.gene068282:CDS
AATTGGTTCAAATACCAATT+CGG 0.428619 4.4:-86903634 MS.gene068282:CDS
GTTGAAAGGTCTTTGGATGA+TGG 0.432736 4.4:-86905822 MS.gene068282:CDS
CATGTAATGTTACACCTATA+AGG 0.432770 4.4:-86903794 MS.gene068282:CDS
GCAGTAATCACAACATATGA+AGG 0.450008 4.4:-86903897 MS.gene068282:CDS
GAAATTGATATTCTTGATGA+TGG 0.452886 4.4:-86904292 MS.gene068282:CDS
TGGAGGAGATTATGATGACT+TGG 0.466240 4.4:-86905622 MS.gene068282:CDS
AGAAGGGTGTAGAACTGTTA+AGG 0.478856 4.4:-86904344 MS.gene068282:CDS
TTATGATGACTTGGGAATAG+AGG 0.481749 4.4:-86905613 MS.gene068282:CDS
CAAAGAAAATCAGAAGAAGA+TGG 0.492604 4.4:-86905945 MS.gene068282:CDS
AATCAGAAGAAGATGGATAC+AGG 0.502233 4.4:-86905938 MS.gene068282:CDS
GTAGTTTGAACCACAACTCT+AGG 0.508298 4.4:+86904319 None:intergenic
TACCAATTCGGAACAATACT+CGG 0.514905 4.4:-86903622 MS.gene068282:CDS
AGCTATTCTTATTCCACAGA+AGG 0.516161 4.4:-86904361 MS.gene068282:CDS
GGAGGAGATTATGATGACTT+GGG 0.531440 4.4:-86905621 MS.gene068282:CDS
CTCTTCCTAGAGGTACATCA+TGG 0.532042 4.4:+86903865 None:intergenic
TTGTACACTGAGGCTTAGGA+TGG 0.563371 4.4:+86905763 None:intergenic
CATGATGTACCTCTAGGAAG+AGG 0.569832 4.4:-86903864 MS.gene068282:CDS
GAATAATTAGTCACTGCTGA+AGG 0.572182 4.4:+86903771 None:intergenic
TATGGAGAGAAACAAGTGAA+AGG 0.574260 4.4:-86905906 MS.gene068282:CDS
TTGATGATGGATATAGGTGG+AGG 0.585484 4.4:-86904279 MS.gene068282:CDS
TGGGAATAGAGGCCAAAAGA+TGG 0.587508 4.4:-86905602 MS.gene068282:intron
AACAGTTCTACACCCTTCTG+TGG 0.594037 4.4:+86904348 None:intergenic
TACTACAAATGTGTAATCCA+AGG 0.596332 4.4:-86903966 MS.gene068282:CDS
CATAACCATGATGTACCTCT+AGG 0.598674 4.4:-86903870 MS.gene068282:CDS
GCTATTCTTATTCCACAGAA+GGG 0.600897 4.4:-86904360 MS.gene068282:CDS
CAGTAATCACAACATATGAA+GGG 0.624707 4.4:-86903896 MS.gene068282:CDS
CAATGAAGAAGAAAGTTGAA+AGG 0.635399 4.4:-86905836 MS.gene068282:CDS
TTAAAGGAAATCCAAACCCA+AGG 0.636841 4.4:-86904237 MS.gene068282:intron
TGTTAAGGAACCTAGAGTTG+TGG 0.637272 4.4:-86904329 MS.gene068282:CDS
CTTGAAATTCCTCTTCCTAG+AGG 0.637467 4.4:+86903855 None:intergenic
CAGAAGAAGATGGATACAGG+TGG 0.640643 4.4:-86905935 MS.gene068282:CDS
GAGTTGTTGCATGATGAAGA+AGG 0.644778 4.4:+86905708 None:intergenic
TTCTTGATGATGGATATAGG+TGG 0.671599 4.4:-86904282 MS.gene068282:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATTAAAAAAAAAT+TGG + chr4.4:86904016-86904035 None:intergenic 0.0%
!! AAAAAAATTAAAAAAAAATT+GGG + chr4.4:86904015-86904034 None:intergenic 0.0%
!! AAAAATTAAAAAAAAATTGG+GGG + chr4.4:86904013-86904032 None:intergenic 10.0%
!! AACATTAGATAAATAATTAA+TGG + chr4.4:86904450-86904469 None:intergenic 10.0%
!! TAAATGATATAATATACTAA+CGG - chr4.4:86905388-86905407 MS.gene068282:intron 10.0%
!!! AATAAAATGATTTAGTATTT+TGG - chr4.4:86904570-86904589 MS.gene068282:intron 10.0%
!!! ATAAAATGATTTAGTATTTT+GGG - chr4.4:86904571-86904590 MS.gene068282:intron 10.0%
!!! TTATAACAATTTTTTTAAAG+AGG - chr4.4:86904470-86904489 MS.gene068282:intron 10.0%
!! AAAATTAAAAAAAAATTGGG+GGG + chr4.4:86904012-86904031 None:intergenic 15.0%
!! ATTACTCAAATAGTATATAA+AGG - chr4.4:86903740-86903759 MS.gene068282:CDS 15.0%
!! TAATATTTATAGTTTGAACT+AGG - chr4.4:86904839-86904858 MS.gene068282:intron 15.0%
!! TATCTATAACTATAACTAAA+TGG + chr4.4:86905360-86905379 None:intergenic 15.0%
!!! TAAAATGATTTAGTATTTTG+GGG - chr4.4:86904572-86904591 MS.gene068282:intron 15.0%
!!! TTTTAGATTCATTCAATAAA+TGG - chr4.4:86904979-86904998 MS.gene068282:intron 15.0%
!! ATTTATAGCACATAAATTCT+TGG - chr4.4:86904790-86904809 MS.gene068282:intron 20.0%
!! GAACAAATTATTAGCATATA+GGG + chr4.4:86905527-86905546 None:intergenic 20.0%
!! TATGCAAATAATACAACTTA+TGG - chr4.4:86905321-86905340 MS.gene068282:intron 20.0%
!! TGAACAAATTATTAGCATAT+AGG + chr4.4:86905528-86905547 None:intergenic 20.0%
!! TTTATGATTCTCATTATTGT+AGG - chr4.4:86905130-86905149 MS.gene068282:intron 20.0%
! AAACATAAATGAACAACGTT+TGG + chr4.4:86904622-86904641 None:intergenic 25.0%
! AAATTATTAGCATATAGGGT+TGG + chr4.4:86905523-86905542 None:intergenic 25.0%
! CATTCAATAAATGGTATATG+TGG - chr4.4:86904988-86905007 MS.gene068282:intron 25.0%
! GAAATCAACCTCAAAAATAT+TGG + chr4.4:86905099-86905118 None:intergenic 25.0%
! GAAATTGATATTCTTGATGA+TGG - chr4.4:86905243-86905262 MS.gene068282:intron 25.0%
! TTGAAAAATGCTTTACTACT+AGG - chr4.4:86904649-86904668 MS.gene068282:intron 25.0%
! TTGTATTATTTGCATACCTT+GGG + chr4.4:86905317-86905336 None:intergenic 25.0%
!! AATTGGTTCAAATACCAATT+CGG - chr4.4:86905901-86905920 MS.gene068282:CDS 25.0%
!! GTTCAAAATAATGTTTCTAC+AGG - chr4.4:86905543-86905562 MS.gene068282:intron 25.0%
!!! AGTAGTAAAGCATTTTTCAA+TGG + chr4.4:86904649-86904668 None:intergenic 25.0%
!!! ATATTCTTGATGATGGATAT+AGG - chr4.4:86905250-86905269 MS.gene068282:intron 25.0%
!!! ATGAAGTACCAATATTTTTG+AGG - chr4.4:86905088-86905107 MS.gene068282:intron 25.0%
AAATTGAGATTTAGTGTGGA+TGG + chr4.4:86904113-86904132 None:intergenic 30.0%
ATGGCTTCTGATATTTCTTT+GGG - chr4.4:86903851-86903870 MS.gene068282:CDS 30.0%
CAAAGAAAATCAGAAGAAGA+TGG - chr4.4:86903590-86903609 MS.gene068282:CDS 30.0%
CAATGAAGAAGAAAGTTGAA+AGG - chr4.4:86903699-86903718 MS.gene068282:CDS 30.0%
CAGTAATCACAACATATGAA+GGG - chr4.4:86905639-86905658 MS.gene068282:CDS 30.0%
CATGTAATGTTACACCTATA+AGG - chr4.4:86905741-86905760 MS.gene068282:CDS 30.0%
CGAAAAATTGAGATTTAGTG+TGG + chr4.4:86904117-86904136 None:intergenic 30.0%
GATTCTCATTATTGTAGGAA+AGG - chr4.4:86905135-86905154 MS.gene068282:intron 30.0%
GTTGTATTATTTGCATACCT+TGG + chr4.4:86905318-86905337 None:intergenic 30.0%
TACTACAAATGTGTAATCCA+AGG - chr4.4:86905569-86905588 MS.gene068282:intron 30.0%
TAGAAGAAAGAGAAGAAGAA+GGG + chr4.4:86904389-86904408 None:intergenic 30.0%
TATGGACAGAAAGTAGTTAA+AGG - chr4.4:86905282-86905301 MS.gene068282:intron 30.0%
TATGGCTTCTGATATTTCTT+TGG - chr4.4:86903850-86903869 MS.gene068282:CDS 30.0%
TCTAACATATAAGAGAGAGT+TGG - chr4.4:86904735-86904754 MS.gene068282:intron 30.0%
TTAAAAGGAAAGAGAGTTCA+AGG + chr4.4:86904189-86904208 None:intergenic 30.0%
TTCTTCTTCATTGAGCAAAT+TGG + chr4.4:86903692-86903711 None:intergenic 30.0%
! CCTTTTAACGTATAAGCTAT+CGG - chr4.4:86904201-86904220 MS.gene068282:intron 30.0%
! GTGACAGAAAGAAATGTTTT+TGG - chr4.4:86904239-86904258 MS.gene068282:CDS 30.0%
! TGTTCTTGATTTTCAGAAGT+TGG + chr4.4:86905833-86905852 None:intergenic 30.0%
!! GATGAATTCTAGAAGCTTTT+TGG - chr4.4:86905871-86905890 MS.gene068282:CDS 30.0%
!!! ACATCACAAACTAGTTTTTC+TGG - chr4.4:86903893-86903912 MS.gene068282:CDS 30.0%
!!! CGACTATTATTTTTAGACAG+AGG - chr4.4:86905463-86905482 MS.gene068282:intron 30.0%
AATCAGAAGAAGATGGATAC+AGG - chr4.4:86903597-86903616 MS.gene068282:CDS 35.0%
AGAAGAAAGAGAAGAAGAAG+GGG + chr4.4:86904388-86904407 None:intergenic 35.0%
AGCTATTCTTATTCCACAGA+AGG - chr4.4:86905174-86905193 MS.gene068282:intron 35.0%
ATCTTGTCCAAAAAGTTAGG+GGG + chr4.4:86904909-86904928 None:intergenic 35.0%
CAGCAACACAAAAGTAGAAT+CGG - chr4.4:86904328-86904347 MS.gene068282:CDS 35.0%
CCGATAGCTTATACGTTAAA+AGG + chr4.4:86904204-86904223 None:intergenic 35.0%
GAAGAAAGTTGAAAGGTCTT+TGG - chr4.4:86903706-86903725 MS.gene068282:CDS 35.0%
GAATAATTAGTCACTGCTGA+AGG + chr4.4:86905767-86905786 None:intergenic 35.0%
GATCTTGTCCAAAAAGTTAG+GGG + chr4.4:86904910-86904929 None:intergenic 35.0%
GCAGTAATCACAACATATGA+AGG - chr4.4:86905638-86905657 MS.gene068282:CDS 35.0%
GCTATTCTTATTCCACAGAA+GGG - chr4.4:86905175-86905194 MS.gene068282:intron 35.0%
GGATCTTGTCCAAAAAGTTA+GGG + chr4.4:86904911-86904930 None:intergenic 35.0%
GGTCACTATTATAAACCAGA+GGG + chr4.4:86905030-86905049 None:intergenic 35.0%
GGTGTAATAAAGTTGCTCTA+TGG - chr4.4:86904260-86904279 MS.gene068282:CDS 35.0%
GTAGAAGAAAGAGAAGAAGA+AGG + chr4.4:86904390-86904409 None:intergenic 35.0%
GTGCACTTGTAATAACTTCT+TGG + chr4.4:86903665-86903684 None:intergenic 35.0%
TACCAATTCGGAACAATACT+CGG - chr4.4:86905913-86905932 MS.gene068282:CDS 35.0%
TATGGAGAGAAACAAGTGAA+AGG - chr4.4:86903629-86903648 MS.gene068282:CDS 35.0%
TGCTTATAATAGTGACCAGA+GGG + chr4.4:86904949-86904968 None:intergenic 35.0%
TTAAAGGAAATCCAAACCCA+AGG - chr4.4:86905298-86905317 MS.gene068282:intron 35.0%
TTATTTGCATACCTTGGGTT+TGG + chr4.4:86905312-86905331 None:intergenic 35.0%
TTCATCATGCAACAACTCTA+TGG - chr4.4:86903832-86903851 MS.gene068282:CDS 35.0%
TTGCTTATAATAGTGACCAG+AGG + chr4.4:86904950-86904969 None:intergenic 35.0%
TTTAAAGAGGAATGCTACTC+TGG - chr4.4:86904483-86904502 MS.gene068282:intron 35.0%
! AGCTTTTTGGACAGATCAAT+TGG - chr4.4:86905884-86905903 MS.gene068282:CDS 35.0%
! CTCTATGGATTGTTGATGTT+GGG - chr4.4:86904275-86904294 MS.gene068282:CDS 35.0%
! CTCTGGTTTATAATAGTGAC+CGG - chr4.4:86905029-86905048 MS.gene068282:intron 35.0%
! TTATGATGACTTGGGAATAG+AGG - chr4.4:86903922-86903941 MS.gene068282:CDS 35.0%
! TTCTGATATTTCTTTGGGAG+AGG - chr4.4:86903856-86903875 MS.gene068282:CDS 35.0%
!! ACAGAGGAAGTACTTAACTT+TGG - chr4.4:86905479-86905498 MS.gene068282:intron 35.0%
!! AGTACTTAACTTTGGAGTTC+TGG - chr4.4:86905487-86905506 MS.gene068282:intron 35.0%
!! GTACTGATCTTACCATCTTT+TGG + chr4.4:86903948-86903967 None:intergenic 35.0%
!! TTCTTGATGATGGATATAGG+TGG - chr4.4:86905253-86905272 MS.gene068282:intron 35.0%
!!! TCACAAACTAGTTTTTCTGG+AGG - chr4.4:86903896-86903915 MS.gene068282:CDS 35.0%
AAGAGAGTTCAAGGAAGGAA+AGG + chr4.4:86904180-86904199 None:intergenic 40.0%
AAGGAAAGAGAGTTCAAGGA+AGG + chr4.4:86904185-86904204 None:intergenic 40.0%
AAGGAATTGAACTGTGTGTG+GGG + chr4.4:86904088-86904107 None:intergenic 40.0%
AATTCGAATCGACGACGATA+TGG + chr4.4:86904147-86904166 None:intergenic 40.0%
AGATTTAGTGTGGATGGTGA+AGG + chr4.4:86904107-86904126 None:intergenic 40.0%
CACTATTATAAACCAGAGGG+TGG + chr4.4:86905027-86905046 None:intergenic 40.0%
CATAACCATGATGTACCTCT+AGG - chr4.4:86905665-86905684 MS.gene068282:CDS 40.0%
CGGATCTTGTCCAAAAAGTT+AGG + chr4.4:86904912-86904931 None:intergenic 40.0%
CGGTCACTATTATAAACCAG+AGG + chr4.4:86905031-86905050 None:intergenic 40.0%
CTTGAAATTCCTCTTCCTAG+AGG + chr4.4:86905683-86905702 None:intergenic 40.0%
GAAGGAATTGAACTGTGTGT+GGG + chr4.4:86904089-86904108 None:intergenic 40.0%
GAGTTGTTGCATGATGAAGA+AGG + chr4.4:86903830-86903849 None:intergenic 40.0%
GCACAAAAAAATACACCCTC+CGG + chr4.4:86905051-86905070 None:intergenic 40.0%
GGAGGAGATTATGATGACTT+GGG - chr4.4:86903914-86903933 MS.gene068282:CDS 40.0%
GGATACAGGTGGAGAAAATA+TGG - chr4.4:86903611-86903630 MS.gene068282:CDS 40.0%
GGATATAGGTGGAGGAAATA+TGG - chr4.4:86905264-86905283 MS.gene068282:intron 40.0%
GGTTTATAATAGTGACCGGA+GGG - chr4.4:86905033-86905052 MS.gene068282:intron 40.0%
GTAGTTTGAACCACAACTCT+AGG + chr4.4:86905219-86905238 None:intergenic 40.0%
GTTGAAAGGTCTTTGGATGA+TGG - chr4.4:86903713-86903732 MS.gene068282:CDS 40.0%
TAGAATCGGAATAACCGAGA+TGG - chr4.4:86904342-86904361 MS.gene068282:CDS 40.0%
TGAAGGAATTGAACTGTGTG+TGG + chr4.4:86904090-86904109 None:intergenic 40.0%
TGGAGGAGATTATGATGACT+TGG - chr4.4:86903913-86903932 MS.gene068282:CDS 40.0%
TGGTTTATAATAGTGACCGG+AGG - chr4.4:86905032-86905051 MS.gene068282:intron 40.0%
TGTTAAGGAACCTAGAGTTG+TGG - chr4.4:86905206-86905225 MS.gene068282:intron 40.0%
TTACTGTGACCTTCTTCTCA+CGG - chr4.4:86904059-86904078 MS.gene068282:intron 40.0%
! AGAAGGGTGTAGAACTGTTA+AGG - chr4.4:86905191-86905210 MS.gene068282:intron 40.0%
! CTTTTTGTACACTGAGGCTT+AGG + chr4.4:86903779-86903798 None:intergenic 40.0%
! GCTCTATGGATTGTTGATGT+TGG - chr4.4:86904274-86904293 MS.gene068282:CDS 40.0%
! GCTCTTCTTTTTGTACACTG+AGG + chr4.4:86903785-86903804 None:intergenic 40.0%
! GTTTTCTCACAGTACAACCT+TGG + chr4.4:86905589-86905608 None:intergenic 40.0%
!! TTGATGATGGATATAGGTGG+AGG - chr4.4:86905256-86905275 MS.gene068282:intron 40.0%
AAAAAAATTGGGGGGAGCCA+TGG + chr4.4:86904004-86904023 None:intergenic 45.0%
AACAGTTCTACACCCTTCTG+TGG + chr4.4:86905190-86905209 None:intergenic 45.0%
AGATGGTAAGATCAGTACGC+AGG - chr4.4:86903950-86903969 MS.gene068282:CDS 45.0%
AGGAATTGAACTGTGTGTGG+GGG + chr4.4:86904087-86904106 None:intergenic 45.0%
ATGGTAAGATCAGTACGCAG+GGG - chr4.4:86903952-86903971 MS.gene068282:CDS 45.0%
CAGAAGAAGATGGATACAGG+TGG - chr4.4:86903600-86903619 MS.gene068282:CDS 45.0%
GATGGTAAGATCAGTACGCA+GGG - chr4.4:86903951-86903970 MS.gene068282:CDS 45.0%
GATGTTGGGATGATGTTAGC+TGG - chr4.4:86904289-86904308 MS.gene068282:CDS 45.0%
GTTGCTGCACATTGCAATCA+AGG + chr4.4:86904315-86904334 None:intergenic 45.0%
TAACCGAGATGGAAGCTTCT+CGG - chr4.4:86904353-86904372 MS.gene068282:CDS 45.0%
TGGGAATAGAGGCCAAAAGA+TGG - chr4.4:86903933-86903952 MS.gene068282:CDS 45.0%
TTATAACGTAGTCCACCCTC+TGG - chr4.4:86905012-86905031 MS.gene068282:intron 45.0%
TTGTACACTGAGGCTTAGGA+TGG + chr4.4:86903775-86903794 None:intergenic 45.0%
! AGCCGAGTATTGTTCCGAAT+TGG + chr4.4:86905918-86905937 None:intergenic 45.0%
! CATGATGTACCTCTAGGAAG+AGG - chr4.4:86905671-86905690 MS.gene068282:CDS 45.0%
! CTCTTCCTAGAGGTACATCA+TGG + chr4.4:86905673-86905692 None:intergenic 45.0%
!! AAAAAATTAAAAAAAAATTG+GGG + chr4.4:86904014-86904033 None:intergenic 5.0%
CAACCGAGAAGCTTCCATCT+CGG + chr4.4:86904359-86904378 None:intergenic 50.0%
CGAATCGACGACGATATGGT+TGG + chr4.4:86904143-86904162 None:intergenic 50.0%
GTCCAAAAAGTTAGGGGGAG+CGG + chr4.4:86904904-86904923 None:intergenic 50.0%
! AGCTATCGGCGCTGAGATTT+CGG - chr4.4:86904215-86904234 MS.gene068282:intron 50.0%
! GTCACTGCTGAAGGCCTTAT+AGG + chr4.4:86905758-86905777 None:intergenic 50.0%
GTAAGATCAGTACGCAGGGG+CGG - chr4.4:86903955-86903974 MS.gene068282:CDS 55.0%
! TGCCGCTCCCCCTAACTTTT+TGG - chr4.4:86904899-86904918 MS.gene068282:intron 55.0%
TACGCAGGGGCGGATCTTCA+CGG - chr4.4:86903965-86903984 MS.gene068282:CDS 60.0%
! ACCAGAGGGCGTACTGACAG+TGG + chr4.4:86904935-86904954 None:intergenic 60.0%
! AGAGGGCGTACTGACAGTGG+CGG + chr4.4:86904932-86904951 None:intergenic 60.0%
ACGCAGGGGCGGATCTTCAC+GGG - chr4.4:86903966-86903985 MS.gene068282:CDS 65.0%
GCCACTGTCAGTACGCCCTC+TGG - chr4.4:86904931-86904950 MS.gene068282:intron 65.0%
!! GTGGGGGTGCCGTGAGAAGA+AGG + chr4.4:86904071-86904090 None:intergenic 65.0%
CGGATCTTCACGGGAGCGGG+GGG - chr4.4:86903975-86903994 MS.gene068282:intron 70.0%
GCGGATCTTCACGGGAGCGG+GGG - chr4.4:86903974-86903993 MS.gene068282:intron 70.0%
GGCGGATCTTCACGGGAGCG+GGG - chr4.4:86903973-86903992 MS.gene068282:CDS 70.0%
GGGCGGATCTTCACGGGAGC+GGG - chr4.4:86903972-86903991 MS.gene068282:CDS 70.0%
GGGGCGGATCTTCACGGGAG+CGG - chr4.4:86903971-86903990 MS.gene068282:CDS 70.0%
ACGGGAGCGGGGGGTAGCCA+TGG - chr4.4:86903984-86904003 MS.gene068282:intron 75.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 86903575 86905982 86903575 ID=MS.gene068282
chr4.4 mRNA 86903575 86905982 86903575 ID=MS.gene068282.t1;Parent=MS.gene068282
chr4.4 exon 86905603 86905982 86905603 ID=MS.gene068282.t1.exon1;Parent=MS.gene068282.t1
chr4.4 CDS 86905603 86905982 86905603 ID=cds.MS.gene068282.t1;Parent=MS.gene068282.t1
chr4.4 exon 86904238 86904405 86904238 ID=MS.gene068282.t1.exon2;Parent=MS.gene068282.t1
chr4.4 CDS 86904238 86904405 86904238 ID=cds.MS.gene068282.t1;Parent=MS.gene068282.t1
chr4.4 exon 86903575 86903992 86903575 ID=MS.gene068282.t1.exon3;Parent=MS.gene068282.t1
chr4.4 CDS 86903575 86903992 86903575 ID=cds.MS.gene068282.t1;Parent=MS.gene068282.t1
Gene Sequence

>MS.gene068282

ATGTCTAAAAGTGAACAAAGAAAATCAGAAGAAGATGGATACAGGTGGAGAAAATATGGAGAGAAACAAGTGAAAGGAAGTGAAAATCCAAGAAGTTATTACAAGTGCACTAATCCAATTTGCTCAATGAAGAAGAAAGTTGAAAGGTCTTTGGATGATGGACAAATTACTCAAATAGTATATAAAGGAAGTCATAACCATCCTAAGCCTCAGTGTACAAAAAGAAGAGCAAATTCTCAATATATTCATCAACCTTCTTCATCATGCAACAACTCTATGGCTTCTGATATTTCTTTGGGAGAGGATGATTTTGATCAAACATCACAAACTAGTTTTTCTGGAGGAGATTATGATGACTTGGGAATAGAGGCCAAAAGATGGTAAGATCAGTACGCAGGGGCGGATCTTCACGGGAGCGGGGGGTAGCCATGGCTCCCCCCAATTTTTTTTTAATTTTTTTTTTCAAGAACTGCTACTGCAACGCTTACTGTGACCTTCTTCTCACGGCACCCCCACACACAGTTCAATTCCTTCACCATCCACACTAAATCTCAATTTTTCGTATCCAACCATATCGTCGTCGATTCGAATTTCGTTCGATTCCTTTCCTTCCTTGAACTCTCTTTCCTTTTAACGTATAAGCTATCGGCGCTGAGATTTCGGTGTGACAGAAAGAAATGTTTTTGGTGTAATAAAGTTGCTCTATGGATTGTTGATGTTGGGATGATGTTAGCTGGCCTTGATTGCAATGTGCAGCAACACAAAAGTAGAATCGGAATAACCGAGATGGAAGCTTCTCGGTTGCTTTTTCCCCTTCTTCTTCTCTTTCTTCTACTTTCAGTAGCTCTCGATAGCTATTTTTTTTCTTTAAACCATTAATTATTTATCTAATGTTTTATAACAATTTTTTTAAAGAGGAATGCTACTCTGGTCACAAGCATAAATGAATAGTGTTTGACACATATATTAAAAGACTTTCTCTAATAATAACAAATAATAAAATGATTTAGTATTTTGGGGAAAAGTCTTTTTATGTGTTTGTGACCAAACGTTGTTCATTTATGTTTGTGACCATTGAAAAATGCTTTACTACTAGGTTATTTCATTAAAAAGTCTTCTTGTGTATGCGACTGAACACTGTTCTAATAACAAATAGTCTTTCTAACATATAAGAGAGAGTTGGAATCAATTCTTAGTTCTTATTTCTAAATCTAGATTTATAGCACATAAATTCTTGGTTCTTATTCTAAAATTAGTACATAAATAATATTTATAGTTTGAACTAGGTCATGATAAAAAAAATTATAATATTTTAGTTAGTATTTGCCGCTCCCCCTAACTTTTTGGACAAGATCCGCCACTGTCAGTACGCCCTCTGGTCACTATTATAAGCAAATATTTATATTTTAGATTCATTCAATAAATGGTATATGTGGTTTATAACGTAGTCCACCCTCTGGTTTATAATAGTGACCGGAGGGTGTATTTTTTTGTGCTTGCAATGCTAATTTGCATGAAGTACCAATATTTTTGAGGTTGATTTCAATATCACTAATTTATGATTCTCATTATTGTAGGAAAGGAGAGAATGAAAATGATAGCTATTCTTATTCCACAGAAGGGTGTAGAACTGTTAAGGAACCTAGAGTTGTGGTTCAAACTACAAGTGAAATTGATATTCTTGATGATGGATATAGGTGGAGGAAATATGGACAGAAAGTAGTTAAAGGAAATCCAAACCCAAGGTATGCAAATAATACAACTTATGGAAACAAACAAATGCCATTTAGTTATAGTTATAGATAATTGCTTCTAAATGATATAATATACTAACGGAAAAAATCAACACAATTAATCATTTTCTTAAAAATCGTGCACAAATCTTAAACGACTATTATTTTTAGACAGAGGAAGTACTTAACTTTGGAGTTCTGGATATTTGTTACCAACCCTATATGCTAATAATTTGTTCAAAATAATGTTTCTACAGGAGCTACTACAAATGTGTAATCCAAGGTTGTACTGTGAGAAAACATGTTGAGAGAGCTTCACATGATATTAAAGCAGTAATCACAACATATGAAGGGAAACATAACCATGATGTACCTCTAGGAAGAGGAATTTCAAGCAGTAGCATAAACAACAGAACTTCTCTTAACAACAATACATGTAATGTTACACCTATAAGGCCTTCAGCAGTGACTAATTATTCTAGCTTAGCAAATTTTACAAATTCACATCATGATTCAAAGCTACCAACTTCTGAAAATCAAGAACATTTTCAGCTAGACATGTTGATGAATTCTAGAAGCTTTTTGGACAGATCAATTGGTTCAAATACCAATTCGGAACAATACTCGGCTAAAGATGACTCATTCTTTCAATCTTTTGTATTGAAGAACTTTTAA

Protein sequence

>MS.gene068282.t1

MSKSEQRKSEEDGYRWRKYGEKQVKGSENPRSYYKCTNPICSMKKKVERSLDDGQITQIVYKGSHNHPKPQCTKRRANSQYIHQPSSSCNNSMASDISLGEDDFDQTSQTSFSGGDYDDLGIEAKRWKGENENDSYSYSTEGCRTVKEPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCVIQGCTVRKHVERASHDIKAVITTYEGKHNHDVPLGRGISSSSINNRTSLNNNTCNVTPIRPSAVTNYSSLANFTNSHHDSKLPTSENQEHFQLDMLMNSRSFLDRSIGSNTNSEQYSAKDDSFFQSFVLKNF