Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068508.t1 | PNX94124.1 | 68.5 | 622 | 139 | 7 | 4 | 568 | 2 | 623 | 1.70E-242 | 849 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068508.t1 | Q94HW2 | 26.8 | 775 | 326 | 6 | 22 | 561 | 14 | 782 | 4.8e-81 | 303.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068508.t1 | A0A2K3MTR7 | 68.5 | 622 | 139 | 7 | 4 | 568 | 2 | 623 | 1.2e-242 | 849.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene068508 | 0.845448 | 4.04E-59 | -1.69E-46 |
| MS.gene050945 | MS.gene068508 | 0.821347 | 4.24E-53 | -1.69E-46 |
| MS.gene051959 | MS.gene068508 | 0.811617 | 6.40E-51 | -1.69E-46 |
| MS.gene051960 | MS.gene068508 | 0.812051 | 5.15E-51 | -1.69E-46 |
| MS.gene054413 | MS.gene068508 | 0.814368 | 1.60E-51 | -1.69E-46 |
| MS.gene054892 | MS.gene068508 | 0.821263 | 4.43E-53 | -1.69E-46 |
| MS.gene054893 | MS.gene068508 | 0.821429 | 4.06E-53 | -1.69E-46 |
| MS.gene054957 | MS.gene068508 | 0.832646 | 8.40E-56 | -1.69E-46 |
| MS.gene057093 | MS.gene068508 | 0.838463 | 2.83E-57 | -1.69E-46 |
| MS.gene057174 | MS.gene068508 | 0.804163 | 2.47E-49 | -1.69E-46 |
| MS.gene057622 | MS.gene068508 | 0.829921 | 3.93E-55 | -1.69E-46 |
| MS.gene05952 | MS.gene068508 | 0.816619 | 5.04E-52 | -1.69E-46 |
| MS.gene06023 | MS.gene068508 | 0.800832 | 1.20E-48 | -1.69E-46 |
| MS.gene060964 | MS.gene068508 | 0.800749 | 1.25E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068508.t1 | MTR_4g046147 | 98.182 | 110 | 2 | 0 | 620 | 729 | 1 | 110 | 3.10e-67 | 217 |
| MS.gene068508.t1 | MTR_4g029990 | 58.228 | 79 | 31 | 1 | 115 | 193 | 1 | 77 | 5.23e-20 | 86.3 |
| MS.gene068508.t1 | MTR_6g061630 | 46.970 | 66 | 35 | 0 | 112 | 177 | 14 | 79 | 5.56e-14 | 68.2 |
| MS.gene068508.t1 | MTR_3g079700 | 38.384 | 99 | 53 | 1 | 430 | 528 | 295 | 385 | 3.02e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068508.t1 | AT1G34070 | 25.676 | 222 | 139 | 6 | 18 | 226 | 16 | 224 | 2.41e-15 | 78.2 |
| MS.gene068508.t1 | AT5G48050 | 24.138 | 203 | 144 | 3 | 1 | 202 | 1 | 194 | 5.06e-14 | 74.7 |
Find 186 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAACCTTCCCTCATCATTT+TGG | 0.107031 | 4.2:+57778600 | MS.gene068508:CDS |
| AGGATTTGTTTGATTATTTA+TGG | 0.138008 | 4.2:-57779119 | None:intergenic |
| ATGAAAGGTTATTAGGTTTA+TGG | 0.149521 | 4.2:-57778934 | None:intergenic |
| CAACAATTCCAACTCATTTC+AGG | 0.189639 | 4.2:+57776804 | MS.gene068508:CDS |
| CTAAAAGACCCAAGATAAAA+AGG | 0.220778 | 4.2:+57784085 | MS.gene068508:CDS |
| TTGGAGTTTATTGGAGGTAT+AGG | 0.235867 | 4.2:-57778774 | None:intergenic |
| GAAGGTTGGCCGTGTGTAAA+AGG | 0.238493 | 4.2:-57778586 | None:intergenic |
| GGATTTGATGAAAGGTTATT+AGG | 0.263275 | 4.2:-57778941 | None:intergenic |
| GGTTTATGGTATGTATTATA+AGG | 0.268691 | 4.2:-57778920 | None:intergenic |
| TAACTCATCAGTGCCATTAT+AGG | 0.294786 | 4.2:-57777751 | None:intergenic |
| TGGAGTTTATTGGAGGTATA+GGG | 0.303895 | 4.2:-57778773 | None:intergenic |
| CCTCAAAGGATCTTCCTAAT+AGG | 0.333048 | 4.2:-57784216 | None:intergenic |
| ATTCTGATCCTAGTCCATTC+AGG | 0.335224 | 4.2:-57777287 | None:intergenic |
| GAAGATGTGGTCTTAGTAGA+AGG | 0.337990 | 4.2:-57779052 | None:intergenic |
| CAGGTCTTTGCTGTGTGATT+TGG | 0.338795 | 4.2:-57777576 | None:intergenic |
| GATGTGGATCCACCATTGTT+AGG | 0.338950 | 4.2:-57777510 | None:intergenic |
| CTAGCTCTCCTGTTCCTATT+AGG | 0.342733 | 4.2:+57784202 | MS.gene068508:CDS |
| CGTGTGTAAAAGGGCCTTGC+CGG | 0.345699 | 4.2:-57778576 | None:intergenic |
| TAGAAGGAGATGTTGTGTTT+TGG | 0.349282 | 4.2:-57779036 | None:intergenic |
| GAAGATGTAGAGGATTGTAT+TGG | 0.353747 | 4.2:-57778715 | None:intergenic |
| AGCCCGAGGTTGGAGTTTAT+TGG | 0.359237 | 4.2:-57778783 | None:intergenic |
| TTGAGGCTGTTTGCCTTTGA+AGG | 0.365447 | 4.2:-57777454 | None:intergenic |
| CTTGTCCAGTAGTTGTAATC+TGG | 0.373137 | 4.2:-57776985 | None:intergenic |
| ATCCAATGGTGAATTGATAA+TGG | 0.385583 | 4.2:-57777241 | None:intergenic |
| CATAGCATCATCACGACATT+AGG | 0.394478 | 4.2:+57777051 | MS.gene068508:CDS |
| AACTCATCAGTGCCATTATA+GGG | 0.394843 | 4.2:-57777750 | None:intergenic |
| AGACAAGGTTATGAGCTTCT+TGG | 0.395080 | 4.2:+57783943 | MS.gene068508:CDS |
| GTGTTGGGAGTCGATTTATA+AGG | 0.396142 | 4.2:-57778649 | None:intergenic |
| GAGAGTATCCCAAGCTTGTT+GGG | 0.399429 | 4.2:-57777088 | None:intergenic |
| CAAATGAATGCACTATTCAT+TGG | 0.399704 | 4.2:+57776907 | MS.gene068508:CDS |
| CCGGACCATTGGGACGCTTC+GGG | 0.401079 | 4.2:-57777617 | None:intergenic |
| CATGTTAACCGTCCCTATAA+TGG | 0.409998 | 4.2:+57777738 | MS.gene068508:CDS |
| CTGAAATGAGTTGGAATTGT+TGG | 0.416946 | 4.2:-57776803 | None:intergenic |
| CTCACGCTGCCAATGAAGAT+TGG | 0.420279 | 4.2:+57777664 | MS.gene068508:CDS |
| TGAGAGTATCCCAAGCTTGT+TGG | 0.422899 | 4.2:-57777089 | None:intergenic |
| TCTGAGTATAAGGTTATGAT+TGG | 0.426016 | 4.2:-57778425 | None:intergenic |
| ACCGGACCATTGGGACGCTT+CGG | 0.432776 | 4.2:-57777618 | None:intergenic |
| GCATTGGCAGTGGCCATGAT+TGG | 0.435470 | 4.2:-57777429 | None:intergenic |
| GGCCTGCCCATCACACATAC+TGG | 0.436607 | 4.2:+57777792 | MS.gene068508:CDS |
| TGAAATGAGTTGGAATTGTT+GGG | 0.437557 | 4.2:-57776802 | None:intergenic |
| TAACCTTATACTCAGACAAT+GGG | 0.438835 | 4.2:+57778432 | MS.gene068508:CDS |
| ACTGCCAATGCTGCCTTCAA+AGG | 0.441122 | 4.2:+57777441 | MS.gene068508:CDS |
| TACCAGTATGTGTGATGGGC+AGG | 0.444783 | 4.2:-57777794 | None:intergenic |
| CAGATCCAGATTACAACTAC+TGG | 0.448056 | 4.2:+57776980 | MS.gene068508:CDS |
| CATCGACACATCGTCGAAAC+CGG | 0.448864 | 4.2:+57778557 | MS.gene068508:CDS |
| AAGATGTAGAGGATTGTATT+GGG | 0.449273 | 4.2:-57778714 | None:intergenic |
| CCTATTAGGAAGATCCTTTG+AGG | 0.449804 | 4.2:+57784216 | MS.gene068508:CDS |
| TTTGGTGGCTGACCTTGGTT+TGG | 0.450330 | 4.2:-57779007 | None:intergenic |
| CAAAACCTCCCAACAAGCTT+GGG | 0.450423 | 4.2:+57777080 | MS.gene068508:CDS |
| AGTGACACGGCGAGGTTGAC+CGG | 0.451994 | 4.2:-57777535 | None:intergenic |
| AGGATCTTCCTAATAGGAAC+AGG | 0.452269 | 4.2:-57784210 | None:intergenic |
| TTATTCGTTGGCGATGGCAC+TGG | 0.453402 | 4.2:+57777771 | MS.gene068508:CDS |
| TCAAAACCTCCCAACAAGCT+TGG | 0.453473 | 4.2:+57777079 | MS.gene068508:CDS |
| TGATGAGCCACCGGACCATT+GGG | 0.453606 | 4.2:-57777627 | None:intergenic |
| GTATAGAGATGATAGAGTGC+AGG | 0.454840 | 4.2:-57778985 | None:intergenic |
| GTTGCGAACAAGTGTGTTCA+TGG | 0.455774 | 4.2:-57783899 | None:intergenic |
| GTCGTAGAATTTGACATGTC+TGG | 0.457041 | 4.2:-57778888 | None:intergenic |
| CTTGTCATTCACACCCTGAA+TGG | 0.461973 | 4.2:+57777273 | MS.gene068508:CDS |
| TATGAGCTTCTTGGTTTACA+AGG | 0.464864 | 4.2:+57783952 | MS.gene068508:CDS |
| AGCAATCGGACTCACTCCTT+TGG | 0.467171 | 4.2:-57777178 | None:intergenic |
| ATGATGAGCCACCGGACCAT+TGG | 0.470164 | 4.2:-57777628 | None:intergenic |
| TTTGCCTTTGAAGGCAGCAT+TGG | 0.474223 | 4.2:-57777445 | None:intergenic |
| CAACACTGCCTCTCCAATCA+TGG | 0.475359 | 4.2:+57777416 | MS.gene068508:CDS |
| CCTCTACATCTTCACTCCTT+CGG | 0.476082 | 4.2:+57778725 | MS.gene068508:CDS |
| TGAAGATCATCGAAGCTAGT+TGG | 0.478146 | 4.2:-57777348 | None:intergenic |
| TCATGTGGAGAACCGGTGTT+GGG | 0.478818 | 4.2:-57778664 | None:intergenic |
| GTTGTAATCTGGATCTGTTA+TGG | 0.479036 | 4.2:-57776974 | None:intergenic |
| TAATCTGGATCTGTTATGGC+AGG | 0.484670 | 4.2:-57776970 | None:intergenic |
| GCGAGGTTGACCGGAGGATG+TGG | 0.486924 | 4.2:-57777526 | None:intergenic |
| GTCCATGATCCAATCTTCAT+TGG | 0.487093 | 4.2:-57777673 | None:intergenic |
| TTCATTTGAATATGCCATGC+TGG | 0.487227 | 4.2:-57776892 | None:intergenic |
| CTGTGAAGATATTCAGCAAT+CGG | 0.487409 | 4.2:-57777192 | None:intergenic |
| TTCTGATCCTAGTCCATTCA+GGG | 0.487484 | 4.2:-57777286 | None:intergenic |
| CAATTCACCATTGGATGATG+TGG | 0.491925 | 4.2:+57777248 | MS.gene068508:CDS |
| GAAGATCATCGAAGCTAGTT+GGG | 0.494355 | 4.2:-57777347 | None:intergenic |
| TCCACTTCAAGTTCTCCATC+AGG | 0.494493 | 4.2:+57779169 | MS.gene068508:CDS |
| TCAGCTGTGGAATTAAGTTC+AGG | 0.495025 | 4.2:-57778527 | None:intergenic |
| ATGTGGATCCACCATTGTTA+GGG | 0.495712 | 4.2:-57777509 | None:intergenic |
| TATAGGGACGGTTAACATGA+AGG | 0.501135 | 4.2:-57777734 | None:intergenic |
| CCGAGGTTGGAGTTTATTGG+AGG | 0.503625 | 4.2:-57778780 | None:intergenic |
| GGCACTGATGAGTTATTCGT+TGG | 0.506905 | 4.2:+57777759 | MS.gene068508:CDS |
| CCCGAAGCGTCCCAATGGTC+CGG | 0.507456 | 4.2:+57777617 | MS.gene068508:CDS |
| TTTGAAGGCAGCATTGGCAG+TGG | 0.509027 | 4.2:-57777439 | None:intergenic |
| ATCTTCATTGGCAGCGTGAG+GGG | 0.509491 | 4.2:-57777661 | None:intergenic |
| TATAGAGATGATAGAGTGCA+GGG | 0.509623 | 4.2:-57778984 | None:intergenic |
| GGTGATTTCATGTGGAGAAC+CGG | 0.510405 | 4.2:-57778671 | None:intergenic |
| TACAAGGTTGAGCCCGAGGT+TGG | 0.510940 | 4.2:-57778793 | None:intergenic |
| AGGGGTTGTTGTATTGTGAC+AGG | 0.514858 | 4.2:-57778965 | None:intergenic |
| CAGAAACGTGGCAATTATCA+TGG | 0.515207 | 4.2:+57777477 | MS.gene068508:CDS |
| AAGGTTGGCCGTGTGTAAAA+GGG | 0.518558 | 4.2:-57778585 | None:intergenic |
| ATAACCTTATACTCAGACAA+TGG | 0.518719 | 4.2:+57778431 | MS.gene068508:CDS |
| TAGTGTTTGGTGGCTGACCT+TGG | 0.518971 | 4.2:-57779012 | None:intergenic |
| AGCCATTATCAATTCACCAT+TGG | 0.521314 | 4.2:+57777239 | MS.gene068508:CDS |
| CCTCCAATAAACTCCAACCT+CGG | 0.527694 | 4.2:+57778780 | MS.gene068508:CDS |
| TTGATTATTTATGGTTTGAG+AGG | 0.534817 | 4.2:-57779110 | None:intergenic |
| CCAAAATGATGAGGGAAGGT+TGG | 0.536908 | 4.2:-57778600 | None:intergenic |
| GAATTAAGTTCAGGTGTATG+AGG | 0.538318 | 4.2:-57778518 | None:intergenic |
| AATGGTGGATCCACATCCTC+CGG | 0.541794 | 4.2:+57777516 | MS.gene068508:CDS |
| ATGAAGGTTGTCTAGAGCAT+TGG | 0.544383 | 4.2:-57777718 | None:intergenic |
| GGTTGGGTCTAGGCAATGGT+AGG | 0.546816 | 4.2:-57778846 | None:intergenic |
| TGGTGGTTGGGTCTAGGCAA+TGG | 0.547451 | 4.2:-57778850 | None:intergenic |
| CTCCAATAAACTCCAACCTC+GGG | 0.547976 | 4.2:+57778781 | MS.gene068508:CDS |
| CTTCAAATGGTGATTTCATG+TGG | 0.548309 | 4.2:-57778679 | None:intergenic |
| GTAACCATGTAGTTTGTAGC+AGG | 0.549983 | 4.2:-57777595 | None:intergenic |
| AATCTTCATTGGCAGCGTGA+GGG | 0.550672 | 4.2:-57777662 | None:intergenic |
| ACACCACTCTCACCTTCAGC+AGG | 0.551528 | 4.2:+57783920 | MS.gene068508:CDS |
| TGATTATTTATGGTTTGAGA+GGG | 0.553678 | 4.2:-57779109 | None:intergenic |
| TTCATTGGATATGACCTCAC+AGG | 0.554500 | 4.2:+57776922 | MS.gene068508:CDS |
| TGACAGGTGGATTTGATGAA+AGG | 0.554534 | 4.2:-57778949 | None:intergenic |
| TCATTTGAATATGCCATGCT+GGG | 0.555204 | 4.2:-57776891 | None:intergenic |
| GGTTGTTGTATTGTGACAGG+TGG | 0.561175 | 4.2:-57778962 | None:intergenic |
| TTCATGTGGAGAACCGGTGT+TGG | 0.562518 | 4.2:-57778665 | None:intergenic |
| TTACAACTACTGGACAAGAC+AGG | 0.562612 | 4.2:+57776990 | MS.gene068508:CDS |
| TGTCTAGAGCATTGGTGATG+TGG | 0.565953 | 4.2:-57777710 | None:intergenic |
| CAATCTTCATTGGCAGCGTG+AGG | 0.567389 | 4.2:-57777663 | None:intergenic |
| TCATCATTAGTCACCGGGGA+AGG | 0.568389 | 4.2:-57779139 | None:intergenic |
| TCTCCTGCTGAAGGTGAGAG+TGG | 0.568581 | 4.2:-57783923 | None:intergenic |
| GGAACCTCATCATTAGTCAC+CGG | 0.571549 | 4.2:-57779145 | None:intergenic |
| ATAACCTTGTCTCCTGCTGA+AGG | 0.573023 | 4.2:-57783932 | None:intergenic |
| TCGGATGTCTATGCTTCCCA+TGG | 0.574563 | 4.2:+57778744 | MS.gene068508:CDS |
| TAATCAAACAAATCCTTCCC+CGG | 0.575146 | 4.2:+57779126 | MS.gene068508:CDS |
| GAACCTCATCATTAGTCACC+GGG | 0.578271 | 4.2:-57779144 | None:intergenic |
| ATGTATTATAAGGAAATATG+TGG | 0.580588 | 4.2:-57778910 | None:intergenic |
| TTAAGTTCAGGTGTATGAGG+TGG | 0.581108 | 4.2:-57778515 | None:intergenic |
| GCACGAGCATGATGAGCCAC+CGG | 0.582014 | 4.2:-57777636 | None:intergenic |
| TTGAGTGTTGAGAACAATGA+CGG | 0.582840 | 4.2:-57776839 | None:intergenic |
| GATGAGTTATTCGTTGGCGA+TGG | 0.583291 | 4.2:+57777765 | MS.gene068508:CDS |
| AAGAAATTTCTCACTACCCA+TGG | 0.585152 | 4.2:+57778473 | MS.gene068508:CDS |
| TAATAGCATGTAGTATGAGT+TGG | 0.585489 | 4.2:-57777014 | None:intergenic |
| TGATGGAGAACTTGAAGTGG+AGG | 0.587546 | 4.2:-57779167 | None:intergenic |
| GAAGATTGGATCATGGACTC+AGG | 0.591000 | 4.2:+57777678 | MS.gene068508:CDS |
| TGCCAATGAAGATTGGATCA+TGG | 0.592965 | 4.2:+57777671 | MS.gene068508:CDS |
| AATTCCAACTCATTTCAGGT+TGG | 0.595669 | 4.2:+57776808 | MS.gene068508:CDS |
| GGCTCTTACCCTAACAATGG+TGG | 0.595905 | 4.2:+57777501 | MS.gene068508:CDS |
| CCGAAGGAGTGAAGATGTAG+AGG | 0.596222 | 4.2:-57778725 | None:intergenic |
| TGAGAGGGTATAGAGAGCGT+AGG | 0.596969 | 4.2:-57779094 | None:intergenic |
| TGCATAGCTCCAAAATGATG+AGG | 0.597713 | 4.2:-57778609 | None:intergenic |
| ATTCACACCCTGAATGGACT+AGG | 0.598356 | 4.2:+57777279 | MS.gene068508:CDS |
| ACCTGATGGAGAACTTGAAG+TGG | 0.599315 | 4.2:-57779170 | None:intergenic |
| ATGAGCTTCTTGGTTTACAA+GGG | 0.601511 | 4.2:+57783953 | MS.gene068508:CDS |
| CTCACCTTCAGCAGGAGACA+AGG | 0.603930 | 4.2:+57783928 | MS.gene068508:CDS |
| AGCTCCAAAATGATGAGGGA+AGG | 0.604520 | 4.2:-57778604 | None:intergenic |
| AGTGCCAACCTGAAATGAGT+TGG | 0.605788 | 4.2:-57776812 | None:intergenic |
| TAATTGCCACGTTTCTGTTG+AGG | 0.607103 | 4.2:-57777471 | None:intergenic |
| GGTTACCCGAAGCGTCCCAA+TGG | 0.610938 | 4.2:+57777612 | MS.gene068508:CDS |
| AAAATACAAGGTTGAGCCCG+AGG | 0.612321 | 4.2:-57778797 | None:intergenic |
| CACAGTATTGACAAGTGACA+CGG | 0.613873 | 4.2:-57777548 | None:intergenic |
| GCATAGCTCCAAAATGATGA+GGG | 0.616648 | 4.2:-57778608 | None:intergenic |
| AAGACCTGCTACAAACTACA+TGG | 0.617388 | 4.2:+57777591 | MS.gene068508:CDS |
| GAAGCGTCCCAATGGTCCGG+TGG | 0.623192 | 4.2:+57777620 | MS.gene068508:CDS |
| GAAATGAGTTGGAATTGTTG+GGG | 0.625375 | 4.2:-57776801 | None:intergenic |
| ACAAGATCCACATCATCCAA+TGG | 0.632073 | 4.2:-57777255 | None:intergenic |
| GACGCAGAAGAGCCAAACAA+AGG | 0.632309 | 4.2:+57784007 | MS.gene068508:CDS |
| CATCAGTGCCATTATAGGGA+CGG | 0.637829 | 4.2:-57777746 | None:intergenic |
| AACCTTATACTCAGACAATG+GGG | 0.641206 | 4.2:+57778433 | MS.gene068508:CDS |
| AGGTGTAGTTGAGTGTTCAG+TGG | 0.641424 | 4.2:-57779074 | None:intergenic |
| TGGGAAGCATAGACATCCGA+AGG | 0.644865 | 4.2:-57778741 | None:intergenic |
| TTGTGTGAGGAGATATGCCA+TGG | 0.644956 | 4.2:-57778490 | None:intergenic |
| ACACATCGTCGAAACCGGCA+AGG | 0.645138 | 4.2:+57778562 | MS.gene068508:CDS |
| GAATAGCAGTAGCTATCTCA+CGG | 0.645968 | 4.2:-57777311 | None:intergenic |
| GTATGAGGTGGAGTTGTGTG+AGG | 0.646526 | 4.2:-57778503 | None:intergenic |
| TCGATGCCGACGTTCAGCTG+TGG | 0.647287 | 4.2:-57778540 | None:intergenic |
| AGTATCCCAAGCTTGTTGGG+AGG | 0.647398 | 4.2:-57777085 | None:intergenic |
| GGCAGTGGCCATGATTGGAG+AGG | 0.647907 | 4.2:-57777424 | None:intergenic |
| AGAACAACAACTACCCAGCA+TGG | 0.648971 | 4.2:+57776878 | MS.gene068508:CDS |
| TTCCCCGGTGACTAATGATG+AGG | 0.650326 | 4.2:+57779141 | MS.gene068508:CDS |
| AATCTGGATCTGTTATGGCA+GGG | 0.659492 | 4.2:-57776969 | None:intergenic |
| CGACTCACTCGAATTACCAA+AGG | 0.661015 | 4.2:+57777162 | MS.gene068508:CDS |
| GGTGGCTCTTACCCTAACAA+TGG | 0.661699 | 4.2:+57777498 | MS.gene068508:CDS |
| TATAAATCGACTCCCAACAC+CGG | 0.665929 | 4.2:+57778652 | MS.gene068508:CDS |
| TGAGTGTTCAGTGGAAGATG+TGG | 0.666980 | 4.2:-57779065 | None:intergenic |
| GATGGAGAACTTGAAGTGGA+GGG | 0.680000 | 4.2:-57779166 | None:intergenic |
| ATCATCTCTATACCAAACCA+AGG | 0.682826 | 4.2:+57778995 | MS.gene068508:CDS |
| TATTGACAAGTGACACGGCG+AGG | 0.687639 | 4.2:-57777543 | None:intergenic |
| GTAGAATTTGACATGTCTGG+AGG | 0.689019 | 4.2:-57778885 | None:intergenic |
| TACCATTGACAAAACCTGTG+AGG | 0.701619 | 4.2:-57776936 | None:intergenic |
| ATAGAGATGATAGAGTGCAG+GGG | 0.703380 | 4.2:-57778983 | None:intergenic |
| GACACGGCGAGGTTGACCGG+AGG | 0.709388 | 4.2:-57777532 | None:intergenic |
| TGAAAACTACCTCAACAGAG+AGG | 0.714110 | 4.2:+57777389 | MS.gene068508:CDS |
| ACCTTATACTCAGACAATGG+GGG | 0.714567 | 4.2:+57778434 | MS.gene068508:CDS |
| TTAATTCCACAGCTGAACGT+CGG | 0.714804 | 4.2:+57778534 | MS.gene068508:CDS |
| AAACGTGGCAATTATCATGG+TGG | 0.717223 | 4.2:+57777480 | MS.gene068508:CDS |
| AAATGAGTTGGAATTGTTGG+GGG | 0.724196 | 4.2:-57776800 | None:intergenic |
| AAACAGCCTCAACAGAAACG+TGG | 0.738770 | 4.2:+57777465 | MS.gene068508:CDS |
| AACCTCATCATTAGTCACCG+GGG | 0.740799 | 4.2:-57779143 | None:intergenic |
| TGTGTGAGGAGATATGCCAT+GGG | 0.744773 | 4.2:-57778489 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 57776775 | 57784236 | 57776775 | ID=MS.gene068508 |
| chr4.2 | mRNA | 57776775 | 57784236 | 57776775 | ID=MS.gene068508.t1;Parent=MS.gene068508 |
| chr4.2 | exon | 57776775 | 57777813 | 57776775 | ID=MS.gene068508.t1.exon1;Parent=MS.gene068508.t1 |
| chr4.2 | CDS | 57776775 | 57777813 | 57776775 | ID=cds.MS.gene068508.t1;Parent=MS.gene068508.t1 |
| chr4.2 | exon | 57778390 | 57779190 | 57778390 | ID=MS.gene068508.t1.exon2;Parent=MS.gene068508.t1 |
| chr4.2 | CDS | 57778390 | 57779190 | 57778390 | ID=cds.MS.gene068508.t1;Parent=MS.gene068508.t1 |
| chr4.2 | exon | 57783884 | 57784236 | 57783884 | ID=MS.gene068508.t1.exon3;Parent=MS.gene068508.t1 |
| chr4.2 | CDS | 57783884 | 57784236 | 57783884 | ID=cds.MS.gene068508.t1;Parent=MS.gene068508.t1 |
| Gene Sequence |
| Protein sequence |
