AlfalfaGEDB | MS.gene068633

M. sativa cultivar XinJiangDaYe / MS.gene068633

KEGG: K09264
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0110165 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF01486.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068633.t1	XP_003612958.1	96.6	178	6	0	1	178	62	239	5.60E-67	263.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068633.t1	Q9SZJ6	67.4	92	29	1	1	91	62	153	5.3e-26	119.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068633.t1	A9YWS1	96.6	178	6	0	1	178	62	239	4.0e-67	263.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049549	MS.gene068633	0.816281	6.00E-52	-1.69E-46
MS.gene051440	MS.gene068633	0.804569	2.03E-49	-1.69E-46
MS.gene051844	MS.gene068633	0.817349	3.45E-52	-1.69E-46
MS.gene052211	MS.gene068633	0.860676	1.75E-63	-1.69E-46
MS.gene052212	MS.gene068633	0.812757	3.61E-51	-1.69E-46
MS.gene052606	MS.gene068633	0.816023	6.85E-52	-1.69E-46
MS.gene053406	MS.gene068633	0.811874	5.63E-51	-1.69E-46
MS.gene053420	MS.gene068633	0.804183	2.44E-49	-1.69E-46
MS.gene054120	MS.gene068633	0.800797	1.22E-48	-1.69E-46
MS.gene054146	MS.gene068633	0.831284	1.82E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068633.t1	MTR_5g031000	96.067	178	7	0	1	178	62	239	3.84e-125	352
MS.gene068633.t1	MTR_5g031000	88.202	178	7	1	1	178	62	225	4.46e-111	316
MS.gene068633.t1	MTR_5g066990	57.386	176	68	4	1	174	6	176	9.90e-60	184
MS.gene068633.t1	MTR_2g009890	55.429	175	68	3	1	172	62	229	1.00e-55	177
MS.gene068633.t1	MTR_5g066990	52.841	176	62	5	1	174	6	162	2.07e-51	162
MS.gene068633.t1	MTR_4g092990	42.446	139	74	1	26	164	5	137	3.24e-30	107
MS.gene068633.t1	MTR_2g017865	36.364	110	68	1	1	108	77	186	1.25e-14	70.1
MS.gene068633.t1	MTR_8g087860	35.455	110	69	1	1	108	78	187	8.88e-14	67.4
MS.gene068633.t1	MTR_7g075850	32.667	150	86	4	4	152	67	202	2.56e-12	63.5
MS.gene068633.t1	MTR_4g109830	34.951	103	65	1	1	101	63	165	5.57e-12	62.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068633.t1	AT2G22630	52.000	175	74	3	1	174	62	227	3.35e-54	172
MS.gene068633.t1	AT2G22630	52.000	175	74	3	1	174	62	227	3.35e-54	172
MS.gene068633.t1	AT4G37940	51.705	176	74	3	1	175	1	166	3.63e-53	167
MS.gene068633.t1	AT4G37940	51.705	176	74	3	1	175	62	227	2.56e-52	167
MS.gene068633.t1	AT3G57230	50.857	175	79	5	1	174	62	230	1.35e-49	160
MS.gene068633.t1	AT3G57230	50.857	175	79	5	1	174	62	230	1.35e-49	160
MS.gene068633.t1	AT3G57230	62.602	123	45	1	1	122	28	150	1.59e-49	159
MS.gene068633.t1	AT3G57230	62.602	123	45	1	1	122	28	150	1.59e-49	159
MS.gene068633.t1	AT4G37940	46.591	176	69	3	1	175	62	213	3.18e-41	138
MS.gene068633.t1	AT2G14210	49.390	164	76	4	1	163	63	220	5.58e-35	122

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Find 34 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACACAACTACACAAAA+AGG	0.340273	5.1:-21262090	MS.gene068633:intron
AAAGTCTACAAGAAAACCAT+AGG	0.574987	5.1:-21262583	MS.gene068633:intron
AAATCCAGAATCTGAAGTCA+AGG	0.573093	5.1:-21263346	MS.gene068633:intron
AAATGTGGAGCTCTATAAGA+AGG	0.555562	5.1:-21262132	MS.gene068633:CDS
AATCCAAGAGCTGAACCGAA+AGG	0.649030	5.1:-21262263	MS.gene068633:intron
AATGTCGTAGGTGTATGGCA+CGG	0.795308	5.1:-21261831	MS.gene068633:intron
ACAAGACCTAGAGAGTCAAC+TGG	0.528351	5.1:-21262423	MS.gene068633:CDS
ACAGGGAAACATAATCCATC+AGG	0.520605	5.1:-21262156	MS.gene068633:intron
ATTCTGGATTTGTCCCTTGT+TGG	0.350055	5.1:+21263358	None:intergenic
ATTGAAATGTCGTAGGTGTA+TGG	0.485215	5.1:-21261836	MS.gene068633:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACACACAACTACACAAAA+AGG	-	chr5.1:21262979-21262998	MS.gene068633:intron	30.0%
AAAGTCTACAAGAAAACCAT+AGG	-	chr5.1:21262486-21262505	MS.gene068633:intron	30.0%
ATGCTGAATGAATTAGTTGA+AGG	+	chr5.1:21262517-21262536	None:intergenic	30.0%
CCAATACGGATAATAATTTG+AGG	-	chr5.1:21262172-21262191	MS.gene068633:intron	30.0%
CCTCAAATTATTATCCGTAT+TGG	+	chr5.1:21262175-21262194	None:intergenic	30.0%
GAGTTACATAAAATAGCAGT+TGG	-	chr5.1:21263079-21263098	MS.gene068633:intron	30.0%
GCATTTGTTCAATTTCCATA+CGG	-	chr5.1:21263293-21263312	MS.gene068633:intron	30.0%
GTGATGTAACTAGATATCTT+TGG	-	chr5.1:21261943-21261962	MS.gene068633:intron	30.0%
TGAGAGATATAACATTTGCA+AGG	-	chr5.1:21261684-21261703	MS.gene068633:CDS	30.0%
TGCCTAAACACTAGAAATTA+AGG	-	chr5.1:21262075-21262094	MS.gene068633:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	21261670	21263421	21261670	ID=MS.gene068633
chr5.1	mRNA	21261670	21263421	21261670	ID=MS.gene068633.t1;Parent=MS.gene068633
chr5.1	exon	21263347	21263421	21263347	ID=MS.gene068633.t1.exon1;Parent=MS.gene068633.t1
chr5.1	CDS	21263347	21263421	21263347	ID=cds.MS.gene068633.t1;Parent=MS.gene068633.t1
chr5.1	exon	21262584	21262645	21262584	ID=MS.gene068633.t1.exon2;Parent=MS.gene068633.t1
chr5.1	CDS	21262584	21262645	21262584	ID=cds.MS.gene068633.t1;Parent=MS.gene068633.t1
chr5.1	exon	21262391	21262490	21262391	ID=MS.gene068633.t1.exon3;Parent=MS.gene068633.t1
chr5.1	CDS	21262391	21262490	21262391	ID=cds.MS.gene068633.t1;Parent=MS.gene068633.t1
chr5.1	exon	21262264	21262305	21262264	ID=MS.gene068633.t1.exon4;Parent=MS.gene068633.t1
chr5.1	CDS	21262264	21262305	21262264	ID=cds.MS.gene068633.t1;Parent=MS.gene068633.t1
chr5.1	exon	21262091	21262174	21262091	ID=MS.gene068633.t1.exon5;Parent=MS.gene068633.t1
chr5.1	CDS	21262091	21262174	21262091	ID=cds.MS.gene068633.t1;Parent=MS.gene068633.t1
chr5.1	exon	21261670	21261843	21261670	ID=MS.gene068633.t1.exon6;Parent=MS.gene068633.t1
chr5.1	CDS	21261670	21261843	21261670	ID=cds.MS.gene068633.t1;Parent=MS.gene068633.t1

Gene Sequence

>MS.gene068633

ATGAAATCAGTGATTGAGAGATATAACATTTGCAAGGAGGACCAACAAGGGACAAATCCAGAATCTGAAGTCAAGGTATGGTTTGTTAATCAATCTTTAGTCATAGCAAAGTGTATTTGATGTCTATCACCATTTTTTTGTTTATTCATGAATTCATTGAATGGTGCAATCATGCTTGTAGTTGTGCATAACAGAACTGCATATAGTTTTGTTCTAATATGTAAAAATCAATACTAATCTTCTCCCCAAAATGGGCACATAATTTACAAAAGAGTGATGTAACTAGATATCTTTGGCCCATCTTTCAATTGTCAAAACTTCCAAGAGTGGCATGATTGTACTCATGTCACATAATTTATGAAGTCCCCATGCATTAAATATATCAATTGAATCCTAATTAAGCACTGCCTAAACACTAGAAATTAAGGAAGAAACAAGACATAATAGTTTATGAAGCACGGACACAGACACGGACACCAGACACGATATAGACACCGACACGCCAATACGGATAATAATTTGAGGAAATGACATAATTCAGTGTAATCATAGGTGTTGTGTCGGTGTTGGACTCCGACGCGTATCCGACACCGTGACACGCCTAATCCGAAGGGTGTCCGTGCTTCATAGCATAATAGCTTGATACAATAATTGTCATCACAAAATTACTGTGATTCATATTTCATATCTGATAGTAGGTCCAGTTGAATATCATCCAATCACATTTTGTTTCCTTTTCATTAACCATTGACATTATTTTACTTGATAACTGATAGTTTTGGCAAAGGGAGGCAGAAATTTTAAGGCAGCAACTACAAAGTCTACAAGAAAACCATAGGTACAACCTTCAACTAATTCATTCAGCATTTTTTTTCAATATTTATATTCATTAAGCTCCATGTATGAGAGCACTAACATTTTGAGCTCATAGGCAATTGATGGGAGAACAGCTTTATGGTTTGAGTATCAGAAACCTACAAGACCTAGAGAGTCAACTGGAACTTAGCCTCCAAGGAGTTCGCATGAAAAAGGTTAAGTATAAATCCACTTACTTGATCAAAATAATTATGAACAATGCTAAAACCAGAAATTAACAAGTTGAATCAAATTCTGCAGGAGAAAATTCTGACAGATGAAATCCAAGAGCTGAACCGAAAGGTAACTCTTAGCAGTGACCTTCACTAATATTTCTCTCGAAAATTTCGCAAAACTCACTGAACTTTGTGTTTTAATTTCTTTAACTACAGGGAAACATAATCCATCAGGAAAATGTGGAGCTCTATAAGAAGGTAAACCTCCTTCAACAAGAAAACACACAACTACACAAAAAGGTATCGCGCATCTTACTTAATTTGCACGGCATCCCCAAAATCACAAGAGACTCGCACCACATCAGTGTTGTGAGTCGCGAGTTACATAAAATAGCAGTTGGTTCAAATTTCATACTTACTAAAGCGTGTATCGCGAAACAGTAGTGGTTATTTAAAATTCCGCTGTGATGTAGCACTGCTATTTGACAACATTGCATCACATTCACTTAAGCTTAGGACATTAAGTGTGACAATTGAAATGTCGTAGGTGTATGGCACGGTTGATAATGACGCAACTGCAACAAGCAAAAACGCATTTGTTCAATTTCCATACGGTGTTCATGGAGGAGGAGAATATCCACAAACATTATTTCAACTTCAGTTATGCCAGCCTGAGCAAGAATATTGTGAGACCTCTGGCAGTGCAAGTGCAACAAAATGA

Protein sequence

>MS.gene068633.t1

MKSVIERYNICKEDQQGTNPESEVKFWQREAEILRQQLQSLQENHRQLMGEQLYGLSIRNLQDLESQLELSLQGVRMKKEKILTDEIQELNRKGNIIHQENVELYKKVNLLQQENTQLHKKVYGTVDNDATATSKNAFVQFPYGVHGGGEYPQTLFQLQLCQPEQEYCETSGSASATK