Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068633.t1 | XP_003612958.1 | 96.6 | 178 | 6 | 0 | 1 | 178 | 62 | 239 | 5.60E-67 | 263.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068633.t1 | Q9SZJ6 | 67.4 | 92 | 29 | 1 | 1 | 91 | 62 | 153 | 5.3e-26 | 119.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068633.t1 | A9YWS1 | 96.6 | 178 | 6 | 0 | 1 | 178 | 62 | 239 | 4.0e-67 | 263.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene068633 | 0.816281 | 6.00E-52 | -1.69E-46 |
| MS.gene051440 | MS.gene068633 | 0.804569 | 2.03E-49 | -1.69E-46 |
| MS.gene051844 | MS.gene068633 | 0.817349 | 3.45E-52 | -1.69E-46 |
| MS.gene052211 | MS.gene068633 | 0.860676 | 1.75E-63 | -1.69E-46 |
| MS.gene052212 | MS.gene068633 | 0.812757 | 3.61E-51 | -1.69E-46 |
| MS.gene052606 | MS.gene068633 | 0.816023 | 6.85E-52 | -1.69E-46 |
| MS.gene053406 | MS.gene068633 | 0.811874 | 5.63E-51 | -1.69E-46 |
| MS.gene053420 | MS.gene068633 | 0.804183 | 2.44E-49 | -1.69E-46 |
| MS.gene054120 | MS.gene068633 | 0.800797 | 1.22E-48 | -1.69E-46 |
| MS.gene054146 | MS.gene068633 | 0.831284 | 1.82E-55 | -1.69E-46 |
| MS.gene054742 | MS.gene068633 | 0.803959 | 2.72E-49 | -1.69E-46 |
| MS.gene055139 | MS.gene068633 | 0.807291 | 5.43E-50 | -1.69E-46 |
| MS.gene055154 | MS.gene068633 | 0.80123 | 9.93E-49 | -1.69E-46 |
| MS.gene055240 | MS.gene068633 | 0.851151 | 1.07E-60 | -1.69E-46 |
| MS.gene056218 | MS.gene068633 | 0.871925 | 4.71E-67 | -1.69E-46 |
| MS.gene056298 | MS.gene068633 | 0.821175 | 4.64E-53 | -1.69E-46 |
| MS.gene056748 | MS.gene068633 | 0.8249 | 6.28E-54 | -1.69E-46 |
| MS.gene058108 | MS.gene068633 | 0.800521 | 1.39E-48 | -1.69E-46 |
| MS.gene058171 | MS.gene068633 | 0.807324 | 5.34E-50 | -1.69E-46 |
| MS.gene058175 | MS.gene068633 | 0.81046 | 1.14E-50 | -1.69E-46 |
| MS.gene059955 | MS.gene068633 | 0.801219 | 9.98E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068633.t1 | MTR_5g031000 | 96.067 | 178 | 7 | 0 | 1 | 178 | 62 | 239 | 3.84e-125 | 352 |
| MS.gene068633.t1 | MTR_5g031000 | 88.202 | 178 | 7 | 1 | 1 | 178 | 62 | 225 | 4.46e-111 | 316 |
| MS.gene068633.t1 | MTR_5g066990 | 57.386 | 176 | 68 | 4 | 1 | 174 | 6 | 176 | 9.90e-60 | 184 |
| MS.gene068633.t1 | MTR_2g009890 | 55.429 | 175 | 68 | 3 | 1 | 172 | 62 | 229 | 1.00e-55 | 177 |
| MS.gene068633.t1 | MTR_5g066990 | 52.841 | 176 | 62 | 5 | 1 | 174 | 6 | 162 | 2.07e-51 | 162 |
| MS.gene068633.t1 | MTR_4g092990 | 42.446 | 139 | 74 | 1 | 26 | 164 | 5 | 137 | 3.24e-30 | 107 |
| MS.gene068633.t1 | MTR_2g017865 | 36.364 | 110 | 68 | 1 | 1 | 108 | 77 | 186 | 1.25e-14 | 70.1 |
| MS.gene068633.t1 | MTR_8g087860 | 35.455 | 110 | 69 | 1 | 1 | 108 | 78 | 187 | 8.88e-14 | 67.4 |
| MS.gene068633.t1 | MTR_7g075850 | 32.667 | 150 | 86 | 4 | 4 | 152 | 67 | 202 | 2.56e-12 | 63.5 |
| MS.gene068633.t1 | MTR_4g109830 | 34.951 | 103 | 65 | 1 | 1 | 101 | 63 | 165 | 5.57e-12 | 62.4 |
| MS.gene068633.t1 | MTR_3g005530 | 34.234 | 111 | 71 | 1 | 1 | 109 | 62 | 172 | 6.66e-12 | 62.0 |
| MS.gene068633.t1 | MTR_2g461760 | 33.636 | 110 | 71 | 1 | 1 | 108 | 1 | 110 | 9.31e-12 | 60.8 |
| MS.gene068633.t1 | MTR_2g461760 | 33.636 | 110 | 71 | 1 | 1 | 108 | 1 | 110 | 1.04e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068633.t1 | AT2G22630 | 52.000 | 175 | 74 | 3 | 1 | 174 | 62 | 227 | 3.35e-54 | 172 |
| MS.gene068633.t1 | AT2G22630 | 52.000 | 175 | 74 | 3 | 1 | 174 | 62 | 227 | 3.35e-54 | 172 |
| MS.gene068633.t1 | AT4G37940 | 51.705 | 176 | 74 | 3 | 1 | 175 | 1 | 166 | 3.63e-53 | 167 |
| MS.gene068633.t1 | AT4G37940 | 51.705 | 176 | 74 | 3 | 1 | 175 | 62 | 227 | 2.56e-52 | 167 |
| MS.gene068633.t1 | AT3G57230 | 50.857 | 175 | 79 | 5 | 1 | 174 | 62 | 230 | 1.35e-49 | 160 |
| MS.gene068633.t1 | AT3G57230 | 50.857 | 175 | 79 | 5 | 1 | 174 | 62 | 230 | 1.35e-49 | 160 |
| MS.gene068633.t1 | AT3G57230 | 62.602 | 123 | 45 | 1 | 1 | 122 | 28 | 150 | 1.59e-49 | 159 |
| MS.gene068633.t1 | AT3G57230 | 62.602 | 123 | 45 | 1 | 1 | 122 | 28 | 150 | 1.59e-49 | 159 |
| MS.gene068633.t1 | AT4G37940 | 46.591 | 176 | 69 | 3 | 1 | 175 | 62 | 213 | 3.18e-41 | 138 |
| MS.gene068633.t1 | AT2G14210 | 49.390 | 164 | 76 | 4 | 1 | 163 | 63 | 220 | 5.58e-35 | 122 |
| MS.gene068633.t1 | AT2G14210 | 49.390 | 164 | 76 | 4 | 1 | 163 | 63 | 220 | 7.65e-35 | 122 |
| MS.gene068633.t1 | AT4G37940 | 67.500 | 80 | 25 | 1 | 1 | 79 | 62 | 141 | 6.93e-31 | 110 |
| MS.gene068633.t1 | AT3G57230 | 63.095 | 84 | 30 | 1 | 1 | 83 | 62 | 145 | 3.87e-29 | 105 |
| MS.gene068633.t1 | AT4G09960 | 32.168 | 143 | 94 | 2 | 1 | 140 | 62 | 204 | 5.71e-15 | 70.5 |
| MS.gene068633.t1 | AT4G09960 | 32.168 | 143 | 94 | 2 | 1 | 140 | 63 | 205 | 6.04e-15 | 70.5 |
| MS.gene068633.t1 | AT4G09960 | 32.168 | 143 | 94 | 2 | 1 | 140 | 72 | 214 | 6.23e-15 | 70.5 |
| MS.gene068633.t1 | AT4G09960 | 32.168 | 143 | 94 | 2 | 1 | 140 | 88 | 230 | 8.01e-15 | 70.5 |
| MS.gene068633.t1 | AT2G42830 | 29.480 | 173 | 98 | 5 | 1 | 165 | 77 | 233 | 1.49e-14 | 69.7 |
| MS.gene068633.t1 | AT2G42830 | 29.143 | 175 | 98 | 5 | 1 | 165 | 77 | 235 | 1.66e-14 | 69.7 |
| MS.gene068633.t1 | AT4G18960 | 35.455 | 110 | 69 | 1 | 1 | 108 | 78 | 187 | 7.30e-14 | 67.8 |
| MS.gene068633.t1 | AT4G18960 | 35.714 | 112 | 70 | 1 | 1 | 110 | 64 | 175 | 7.72e-14 | 66.6 |
| MS.gene068633.t1 | AT4G18960 | 35.455 | 110 | 69 | 1 | 1 | 108 | 64 | 173 | 8.30e-14 | 67.4 |
| MS.gene068633.t1 | AT4G18960 | 35.455 | 110 | 69 | 1 | 1 | 108 | 64 | 173 | 8.30e-14 | 67.4 |
| MS.gene068633.t1 | AT4G09960 | 33.108 | 148 | 88 | 4 | 1 | 139 | 157 | 302 | 7.12e-13 | 65.9 |
| MS.gene068633.t1 | AT1G26310 | 32.800 | 125 | 76 | 3 | 1 | 117 | 63 | 187 | 5.83e-12 | 62.8 |
| MS.gene068633.t1 | AT4G09960 | 31.469 | 143 | 81 | 3 | 1 | 140 | 62 | 190 | 5.96e-12 | 62.0 |
| MS.gene068633.t1 | AT5G60910 | 24.571 | 175 | 120 | 3 | 1 | 163 | 1 | 175 | 8.91e-12 | 60.8 |
| MS.gene068633.t1 | AT2G45650 | 35.106 | 94 | 60 | 1 | 1 | 93 | 62 | 155 | 1.65e-11 | 61.2 |
| MS.gene068633.t1 | AT1G69120 | 32.727 | 110 | 72 | 2 | 1 | 108 | 1 | 110 | 1.84e-11 | 60.5 |
| MS.gene068633.t1 | AT5G60910 | 24.571 | 175 | 120 | 3 | 1 | 163 | 63 | 237 | 2.10e-11 | 60.8 |
| MS.gene068633.t1 | AT1G69120 | 32.727 | 110 | 72 | 2 | 1 | 108 | 63 | 172 | 3.37e-11 | 60.5 |
| MS.gene068633.t1 | AT1G69120 | 32.727 | 110 | 72 | 2 | 1 | 108 | 63 | 172 | 3.80e-11 | 60.5 |
| MS.gene068633.t1 | AT3G61120 | 36.667 | 90 | 57 | 0 | 4 | 93 | 65 | 154 | 3.82e-11 | 60.1 |
| MS.gene068633.t1 | AT3G58780 | 31.250 | 112 | 71 | 2 | 1 | 108 | 83 | 192 | 6.52e-11 | 59.7 |
| MS.gene068633.t1 | AT3G58780 | 31.250 | 112 | 71 | 2 | 1 | 108 | 77 | 186 | 7.20e-11 | 59.7 |
Find 34 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATGGGAGAACAGCTTTA+TGG | 0.252080 | 5.1:-21262464 | MS.gene068633:CDS |
| GTTGACTCTCTAGGTCTTGT+AGG | 0.264680 | 5.1:+21262426 | None:intergenic |
| CATACCTTGACTTCAGATTC+TGG | 0.269362 | 5.1:+21263342 | None:intergenic |
| AAACACACAACTACACAAAA+AGG | 0.340273 | 5.1:-21262090 | MS.gene068633:intron |
| TTACCTTTCGGTTCAGCTCT+TGG | 0.342679 | 5.1:+21262260 | None:intergenic |
| ATTCTGGATTTGTCCCTTGT+TGG | 0.350055 | 5.1:+21263358 | None:intergenic |
| CCAAGGAGTTCGCATGAAAA+AGG | 0.352891 | 5.1:-21262390 | MS.gene068633:intron |
| CAATTTCCATACGGTGTTCA+TGG | 0.363241 | 5.1:-21261767 | MS.gene068633:CDS |
| TTGAGCTCATAGGCAATTGA+TGG | 0.413072 | 5.1:-21262480 | MS.gene068633:intron |
| CACAATATTCTTGCTCAGGC+TGG | 0.421967 | 5.1:+21261702 | None:intergenic |
| TGAAGTTGAAATAATGTTTG+TGG | 0.440444 | 5.1:+21261731 | None:intergenic |
| GTCTCACAATATTCTTGCTC+AGG | 0.470192 | 5.1:+21261698 | None:intergenic |
| ATTGAAATGTCGTAGGTGTA+TGG | 0.485215 | 5.1:-21261836 | MS.gene068633:intron |
| ACAGGGAAACATAATCCATC+AGG | 0.520605 | 5.1:-21262156 | MS.gene068633:intron |
| CATAATCCATCAGGAAAATG+TGG | 0.527713 | 5.1:-21262147 | MS.gene068633:CDS |
| ACAAGACCTAGAGAGTCAAC+TGG | 0.528351 | 5.1:-21262423 | MS.gene068633:CDS |
| CCATACGGTGTTCATGGAGG+AGG | 0.529836 | 5.1:-21261761 | MS.gene068633:CDS |
| CAAGAATATTGTGAGACCTC+TGG | 0.534237 | 5.1:-21261692 | MS.gene068633:CDS |
| CCTCCTCCATGAACACCGTA+TGG | 0.536688 | 5.1:+21261761 | None:intergenic |
| TGTTGCACTTGCACTGCCAG+AGG | 0.536747 | 5.1:+21261676 | None:intergenic |
| TAAGTTCCAGTTGACTCTCT+AGG | 0.537150 | 5.1:+21262417 | None:intergenic |
| TGAGCTCATAGGCAATTGAT+GGG | 0.547567 | 5.1:-21262479 | MS.gene068633:intron |
| AAATGTGGAGCTCTATAAGA+AGG | 0.555562 | 5.1:-21262132 | MS.gene068633:CDS |
| GCATTTGTTCAATTTCCATA+CGG | 0.559750 | 5.1:-21261776 | MS.gene068633:CDS |
| AAATCCAGAATCTGAAGTCA+AGG | 0.573093 | 5.1:-21263346 | MS.gene068633:intron |
| AAAGTCTACAAGAAAACCAT+AGG | 0.574987 | 5.1:-21262583 | MS.gene068633:intron |
| CAACTGGAACTTAGCCTCCA+AGG | 0.576707 | 5.1:-21262407 | MS.gene068633:CDS |
| TGAGAGATATAACATTTGCA+AGG | 0.603510 | 5.1:-21263385 | MS.gene068633:CDS |
| ATTTGCAAGGAGGACCAACA+AGG | 0.639607 | 5.1:-21263372 | MS.gene068633:CDS |
| AATCCAAGAGCTGAACCGAA+AGG | 0.649030 | 5.1:-21262263 | MS.gene068633:intron |
| GAGATATAACATTTGCAAGG+AGG | 0.666849 | 5.1:-21263382 | MS.gene068633:CDS |
| TTTCCATACGGTGTTCATGG+AGG | 0.673202 | 5.1:-21261764 | MS.gene068633:CDS |
| TTTGCAAGGAGGACCAACAA+GGG | 0.676614 | 5.1:-21263371 | MS.gene068633:CDS |
| AATGTCGTAGGTGTATGGCA+CGG | 0.795308 | 5.1:-21261831 | MS.gene068633:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGATATATTTAATGCAT+GGG | + | chr5.1:21262038-21262057 | None:intergenic | 15.0% |
| !! | TTCATGAATAAACAAAAAAA+TGG | + | chr5.1:21261802-21261821 | None:intergenic | 15.0% |
| !!! | TTTTAATTTCTTTAACTACA+GGG | - | chr5.1:21262896-21262915 | MS.gene068633:intron | 15.0% |
| !! | ATCAAGTAAAATAATGTCAA+TGG | + | chr5.1:21262417-21262436 | None:intergenic | 20.0% |
| !! | ATTGATATATTTAATGCATG+GGG | + | chr5.1:21262037-21262056 | None:intergenic | 20.0% |
| !! | CAATTGATATATTTAATGCA+TGG | + | chr5.1:21262039-21262058 | None:intergenic | 20.0% |
| !! | TTATTCATGAATTCATTGAA+TGG | - | chr5.1:21261811-21261830 | MS.gene068633:CDS | 20.0% |
| !!! | AATTATTTTGATCAAGTAAG+TGG | + | chr5.1:21262717-21262736 | None:intergenic | 20.0% |
| !!! | GTTTTAATTTCTTTAACTAC+AGG | - | chr5.1:21262895-21262914 | MS.gene068633:intron | 20.0% |
| ! | AAAAGGAAACAAAATGTGAT+TGG | + | chr5.1:21262388-21262407 | None:intergenic | 25.0% |
| ! | AATGTCAATGGTTAATGAAA+AGG | + | chr5.1:21262405-21262424 | None:intergenic | 25.0% |
| ! | ACATAATAGTTTATGAAGCA+CGG | - | chr5.1:21262108-21262127 | MS.gene068633:CDS | 25.0% |
| ! | ACATAATTCAGTGTAATCAT+AGG | - | chr5.1:21262200-21262219 | MS.gene068633:intron | 25.0% |
| ! | CATATTTCATATCTGATAGT+AGG | - | chr5.1:21262346-21262365 | MS.gene068633:intron | 25.0% |
| ! | TGAAGTTGAAATAATGTTTG+TGG | + | chr5.1:21263341-21263360 | None:intergenic | 25.0% |
| !!! | AAGTTTTGACAATTGAAAGA+TGG | + | chr5.1:21261970-21261989 | None:intergenic | 25.0% |
| !!! | AGTTTTGACAATTGAAAGAT+GGG | + | chr5.1:21261969-21261988 | None:intergenic | 25.0% |
| !!! | TACTTGATAACTGATAGTTT+TGG | - | chr5.1:21262429-21262448 | MS.gene068633:CDS | 25.0% |
| !!! | TGATTCAACTTGTTAATTTC+TGG | + | chr5.1:21262756-21262775 | None:intergenic | 25.0% |
| !!! | TTCCTTAATTTCTAGTGTTT+AGG | + | chr5.1:21262080-21262099 | None:intergenic | 25.0% |
| AAACACACAACTACACAAAA+AGG | - | chr5.1:21262979-21262998 | MS.gene068633:intron | 30.0% | |
| AAAGTCTACAAGAAAACCAT+AGG | - | chr5.1:21262486-21262505 | MS.gene068633:intron | 30.0% | |
| ATGCTGAATGAATTAGTTGA+AGG | + | chr5.1:21262517-21262536 | None:intergenic | 30.0% | |
| CCAATACGGATAATAATTTG+AGG | - | chr5.1:21262172-21262191 | MS.gene068633:intron | 30.0% | |
| CCTCAAATTATTATCCGTAT+TGG | + | chr5.1:21262175-21262194 | None:intergenic | 30.0% | |
| GAGTTACATAAAATAGCAGT+TGG | - | chr5.1:21263079-21263098 | MS.gene068633:intron | 30.0% | |
| GCATTTGTTCAATTTCCATA+CGG | - | chr5.1:21263293-21263312 | MS.gene068633:intron | 30.0% | |
| GTGATGTAACTAGATATCTT+TGG | - | chr5.1:21261943-21261962 | MS.gene068633:intron | 30.0% | |
| TGAGAGATATAACATTTGCA+AGG | - | chr5.1:21261684-21261703 | MS.gene068633:CDS | 30.0% | |
| TGCCTAAACACTAGAAATTA+AGG | - | chr5.1:21262075-21262094 | MS.gene068633:intron | 30.0% | |
| TTCGAGAGAAATATTAGTGA+AGG | + | chr5.1:21262848-21262867 | None:intergenic | 30.0% | |
| ! | GTAAATTATGTGCCCATTTT+GGG | + | chr5.1:21261917-21261936 | None:intergenic | 30.0% |
| ! | TAAATTATGTGCCCATTTTG+GGG | + | chr5.1:21261916-21261935 | None:intergenic | 30.0% |
| ! | TGTAAATTATGTGCCCATTT+TGG | + | chr5.1:21261918-21261937 | None:intergenic | 30.0% |
| !!! | ATAACTGATAGTTTTGGCAA+AGG | - | chr5.1:21262435-21262454 | MS.gene068633:CDS | 30.0% |
| !!! | TAACTGATAGTTTTGGCAAA+GGG | - | chr5.1:21262436-21262455 | MS.gene068633:CDS | 30.0% |
| AAATGTGGAGCTCTATAAGA+AGG | - | chr5.1:21262937-21262956 | MS.gene068633:intron | 35.0% | |
| AATGTTAGTGCTCTCATACA+TGG | + | chr5.1:21262569-21262588 | None:intergenic | 35.0% | |
| ACTAATCTTCTCCCCAAAAT+GGG | - | chr5.1:21261902-21261921 | MS.gene068633:intron | 35.0% | |
| AGCTATTATGCTATGAAGCA+CGG | + | chr5.1:21262290-21262309 | None:intergenic | 35.0% | |
| ATTGAAATGTCGTAGGTGTA+TGG | - | chr5.1:21263233-21263252 | MS.gene068633:intron | 35.0% | |
| ATTGTCAAAACTTCCAAGAG+TGG | - | chr5.1:21261977-21261996 | MS.gene068633:intron | 35.0% | |
| CATAATCCATCAGGAAAATG+TGG | - | chr5.1:21262922-21262941 | MS.gene068633:intron | 35.0% | |
| CATCACATTCACTTAAGCTT+AGG | - | chr5.1:21263195-21263214 | MS.gene068633:intron | 35.0% | |
| GAGATATAACATTTGCAAGG+AGG | - | chr5.1:21261687-21261706 | MS.gene068633:CDS | 35.0% | |
| GTGATTGGATGATATTCAAC+TGG | + | chr5.1:21262373-21262392 | None:intergenic | 35.0% | |
| TACTAATCTTCTCCCCAAAA+TGG | - | chr5.1:21261901-21261920 | MS.gene068633:intron | 35.0% | |
| TGTGACAATTGAAATGTCGT+AGG | - | chr5.1:21263226-21263245 | MS.gene068633:intron | 35.0% | |
| TGTTTAGGCAGTGCTTAATT+AGG | + | chr5.1:21262065-21262084 | None:intergenic | 35.0% | |
| TTAGTTGAAGGTTGTACCTA+TGG | + | chr5.1:21262505-21262524 | None:intergenic | 35.0% | |
| ! | AAAGGGAGGCAGAAATTTTA+AGG | - | chr5.1:21262453-21262472 | MS.gene068633:CDS | 35.0% |
| ! | AAATCCAGAATCTGAAGTCA+AGG | - | chr5.1:21261723-21261742 | MS.gene068633:CDS | 35.0% |
| ! | CAAGTTGAATCAAATTCTGC+AGG | - | chr5.1:21262764-21262783 | MS.gene068633:intron | 35.0% |
| ! | CACTAACATTTTGAGCTCAT+AGG | - | chr5.1:21262579-21262598 | MS.gene068633:intron | 35.0% |
| ! | GTTGTGTGTTTTCTTGTTGA+AGG | + | chr5.1:21262970-21262989 | None:intergenic | 35.0% |
| ! | TGTAATCATAGGTGTTGTGT+CGG | - | chr5.1:21262211-21262230 | MS.gene068633:intron | 35.0% |
| !! | CGCATCTTACTTAATTTGCA+CGG | - | chr5.1:21263007-21263026 | MS.gene068633:intron | 35.0% |
| ACAGGGAAACATAATCCATC+AGG | - | chr5.1:21262913-21262932 | MS.gene068633:intron | 40.0% | |
| ATTCTGGATTTGTCCCTTGT+TGG | + | chr5.1:21261714-21261733 | None:intergenic | 40.0% | |
| CAAGAATATTGTGAGACCTC+TGG | - | chr5.1:21263377-21263396 | MS.gene068633:CDS | 40.0% | |
| CAATTTCCATACGGTGTTCA+TGG | - | chr5.1:21263302-21263321 | MS.gene068633:intron | 40.0% | |
| CACTGCTAAGAGTTACCTTT+CGG | + | chr5.1:21262824-21262843 | None:intergenic | 40.0% | |
| CATACCTTGACTTCAGATTC+TGG | + | chr5.1:21261730-21261749 | None:intergenic | 40.0% | |
| GTCTCACAATATTCTTGCTC+AGG | + | chr5.1:21263374-21263393 | None:intergenic | 40.0% | |
| TGAGCTCATAGGCAATTGAT+GGG | - | chr5.1:21262590-21262609 | MS.gene068633:CDS | 40.0% | |
| TTGAGCTCATAGGCAATTGA+TGG | - | chr5.1:21262589-21262608 | MS.gene068633:CDS | 40.0% | |
| TTGATGGGAGAACAGCTTTA+TGG | - | chr5.1:21262605-21262624 | MS.gene068633:CDS | 40.0% | |
| ! | CAGAATCTGAAGTCAAGGTA+TGG | - | chr5.1:21261728-21261747 | MS.gene068633:CDS | 40.0% |
| ! | GTGTGTTTTCTTGTTGAAGG+AGG | + | chr5.1:21262967-21262986 | None:intergenic | 40.0% |
| ! | TAAGTTCCAGTTGACTCTCT+AGG | + | chr5.1:21262655-21262674 | None:intergenic | 40.0% |
| ! | TATTATCCGTATTGGCGTGT+CGG | + | chr5.1:21262167-21262186 | None:intergenic | 40.0% |
| ! | TGCGAGTCTCTTGTGATTTT+GGG | + | chr5.1:21263037-21263056 | None:intergenic | 40.0% |
| AATCCAAGAGCTGAACCGAA+AGG | - | chr5.1:21262806-21262825 | MS.gene068633:intron | 45.0% | |
| AATGTCGTAGGTGTATGGCA+CGG | - | chr5.1:21263238-21263257 | MS.gene068633:intron | 45.0% | |
| ACAAGACCTAGAGAGTCAAC+TGG | - | chr5.1:21262646-21262665 | MS.gene068633:intron | 45.0% | |
| ATAGCAGTGCTACATCACAG+CGG | + | chr5.1:21263163-21263182 | None:intergenic | 45.0% | |
| ATTTGCAAGGAGGACCAACA+AGG | - | chr5.1:21261697-21261716 | MS.gene068633:CDS | 45.0% | |
| CACAATATTCTTGCTCAGGC+TGG | + | chr5.1:21263370-21263389 | None:intergenic | 45.0% | |
| CCAAGGAGTTCGCATGAAAA+AGG | - | chr5.1:21262679-21262698 | MS.gene068633:intron | 45.0% | |
| GAGTACAATCATGCCACTCT+TGG | + | chr5.1:21261993-21262012 | None:intergenic | 45.0% | |
| TTACCTTTCGGTTCAGCTCT+TGG | + | chr5.1:21262812-21262831 | None:intergenic | 45.0% | |
| TTTCCATACGGTGTTCATGG+AGG | - | chr5.1:21263305-21263324 | MS.gene068633:intron | 45.0% | |
| TTTGCAAGGAGGACCAACAA+GGG | - | chr5.1:21261698-21261717 | MS.gene068633:CDS | 45.0% | |
| ! | AGAGCTCCACATTTTCCTGA+TGG | + | chr5.1:21262931-21262950 | None:intergenic | 45.0% |
| ! | GCGAGTCTCTTGTGATTTTG+GGG | + | chr5.1:21263036-21263055 | None:intergenic | 45.0% |
| ! | GTGCGAGTCTCTTGTGATTT+TGG | + | chr5.1:21263038-21263057 | None:intergenic | 45.0% |
| ! | GTTGACTCTCTAGGTCTTGT+AGG | + | chr5.1:21262646-21262665 | None:intergenic | 45.0% |
| ! | TTTTCATGCGAACTCCTTGG+AGG | + | chr5.1:21262679-21262698 | None:intergenic | 45.0% |
| !! | CCTTTTTCATGCGAACTCCT+TGG | + | chr5.1:21262682-21262701 | None:intergenic | 45.0% |
| !!! | CTGATAGTTTTGGCAAAGGG+AGG | - | chr5.1:21262439-21262458 | MS.gene068633:CDS | 45.0% |
| ATGAAGCACGGACACAGACA+CGG | - | chr5.1:21262120-21262139 | MS.gene068633:CDS | 50.0% | |
| CAACTGGAACTTAGCCTCCA+AGG | - | chr5.1:21262662-21262681 | MS.gene068633:intron | 50.0% | |
| CGTGTATCGCGAAACAGTAG+TGG | - | chr5.1:21263125-21263144 | MS.gene068633:intron | 50.0% | |
| TAGACACCGACACGCCAATA+CGG | - | chr5.1:21262158-21262177 | MS.gene068633:intron | 50.0% | |
| TATGAAGCACGGACACCCTT+CGG | + | chr5.1:21262279-21262298 | None:intergenic | 50.0% | |
| ! | CATAGGTGTTGTGTCGGTGT+TGG | - | chr5.1:21262217-21262236 | MS.gene068633:intron | 50.0% |
| ! | GTCGGTGTCTATATCGTGTC+TGG | + | chr5.1:21262149-21262168 | None:intergenic | 50.0% |
| CCATACGGTGTTCATGGAGG+AGG | - | chr5.1:21263308-21263327 | MS.gene068633:intron | 55.0% | |
| CCTCCTCCATGAACACCGTA+TGG | + | chr5.1:21263311-21263330 | None:intergenic | 55.0% | |
| CGCGACTCACAACACTGATG+TGG | + | chr5.1:21263060-21263079 | None:intergenic | 55.0% | |
| CGTGACACGCCTAATCCGAA+GGG | - | chr5.1:21262261-21262280 | MS.gene068633:intron | 55.0% | |
| GATTAGGCGTGTCACGGTGT+CGG | + | chr5.1:21262257-21262276 | None:intergenic | 55.0% | |
| TGTTGCACTTGCACTGCCAG+AGG | + | chr5.1:21263396-21263415 | None:intergenic | 55.0% | |
| ! | CCTTCGGATTAGGCGTGTCA+CGG | + | chr5.1:21262263-21262282 | None:intergenic | 55.0% |
| CCGTGACACGCCTAATCCGA+AGG | - | chr5.1:21262260-21262279 | MS.gene068633:intron | 60.0% | |
| GCACGGACACCCTTCGGATT+AGG | + | chr5.1:21262273-21262292 | None:intergenic | 60.0% | |
| ! | TCACGGTGTCGGATACGCGT+CGG | + | chr5.1:21262246-21262265 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 21261670 | 21263421 | 21261670 | ID=MS.gene068633 |
| chr5.1 | mRNA | 21261670 | 21263421 | 21261670 | ID=MS.gene068633.t1;Parent=MS.gene068633 |
| chr5.1 | exon | 21263347 | 21263421 | 21263347 | ID=MS.gene068633.t1.exon1;Parent=MS.gene068633.t1 |
| chr5.1 | CDS | 21263347 | 21263421 | 21263347 | ID=cds.MS.gene068633.t1;Parent=MS.gene068633.t1 |
| chr5.1 | exon | 21262584 | 21262645 | 21262584 | ID=MS.gene068633.t1.exon2;Parent=MS.gene068633.t1 |
| chr5.1 | CDS | 21262584 | 21262645 | 21262584 | ID=cds.MS.gene068633.t1;Parent=MS.gene068633.t1 |
| chr5.1 | exon | 21262391 | 21262490 | 21262391 | ID=MS.gene068633.t1.exon3;Parent=MS.gene068633.t1 |
| chr5.1 | CDS | 21262391 | 21262490 | 21262391 | ID=cds.MS.gene068633.t1;Parent=MS.gene068633.t1 |
| chr5.1 | exon | 21262264 | 21262305 | 21262264 | ID=MS.gene068633.t1.exon4;Parent=MS.gene068633.t1 |
| chr5.1 | CDS | 21262264 | 21262305 | 21262264 | ID=cds.MS.gene068633.t1;Parent=MS.gene068633.t1 |
| chr5.1 | exon | 21262091 | 21262174 | 21262091 | ID=MS.gene068633.t1.exon5;Parent=MS.gene068633.t1 |
| chr5.1 | CDS | 21262091 | 21262174 | 21262091 | ID=cds.MS.gene068633.t1;Parent=MS.gene068633.t1 |
| chr5.1 | exon | 21261670 | 21261843 | 21261670 | ID=MS.gene068633.t1.exon6;Parent=MS.gene068633.t1 |
| chr5.1 | CDS | 21261670 | 21261843 | 21261670 | ID=cds.MS.gene068633.t1;Parent=MS.gene068633.t1 |
| Gene Sequence |
| Protein sequence |
