AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene068801

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068801.t1 MTR_1g058490 79.511 327 56 4 1 317 1 326 3.16e-169 473
MS.gene068801.t1 MTR_7g105320 53.293 334 133 8 1 315 2 331 5.49e-100 297
MS.gene068801.t1 MTR_1g060460 67.114 149 31 2 1 149 27 157 2.52e-59 187
MS.gene068801.t1 MTR_2g086920 37.421 318 179 7 14 315 3 316 1.05e-54 181
MS.gene068801.t1 MTR_4g052460 39.867 301 160 7 19 298 24 324 1.29e-51 174
MS.gene068801.t1 MTR_3g466350 36.765 272 150 10 16 268 6 274 7.75e-37 133
MS.gene068801.t1 MTR_1g072360 30.081 369 186 14 11 311 4 368 8.75e-33 125
MS.gene068801.t1 MTR_1g072360 30.081 369 186 14 11 311 24 388 1.37e-32 124
MS.gene068801.t1 MTR_8g021080 31.734 271 154 8 14 266 2 259 4.10e-31 118
MS.gene068801.t1 MTR_3g466280 30.935 278 144 9 14 268 4 256 1.91e-29 113
MS.gene068801.t1 MTR_8g022730 30.466 279 165 9 14 268 2 275 6.58e-25 101
MS.gene068801.t1 MTR_3g466300 36.364 176 95 5 16 185 6 170 2.74e-20 88.2
MS.gene068801.t1 MTR_3g466330 36.310 168 90 6 16 177 6 162 1.15e-17 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068801.t1 AT2G27310 41.896 327 164 8 15 317 11 335 1.02e-68 218
MS.gene068801.t1 AT3G44326 42.020 307 154 6 17 299 22 328 1.29e-66 213
MS.gene068801.t1 AT2G36090 43.574 319 146 9 13 317 14 312 1.68e-65 209

Find 115 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGATGTTGGCGGAGAATA+TGG 0.262232 1.2:-46663450 MS.gene068801:CDS
TAGTTTGCAAGTGGAGGATA+TGG 0.265067 1.2:-46663414 MS.gene068801:CDS
GCTATCATGATTTGCATTTC+CGG 0.272726 1.2:-46664127 None:intergenic
GGAGAAGATGGAAGGGAATC+GGG 0.283390 1.2:-46663331 MS.gene068801:CDS
TCTGTTCCGACGAACATCTC+TGG 0.313553 1.2:-46663973 MS.gene068801:CDS
TGGAGGTGGTGCAGCGGAGT+GGG 0.320619 1.2:-46663550 MS.gene068801:CDS
AGGAGAAGATGGAAGGGAAT+CGG 0.338137 1.2:-46663332 MS.gene068801:CDS
GATATGATGTGTTTGCTTAC+CGG 0.363543 1.2:-46663230 MS.gene068801:CDS
GAAACGGAGAGCACCGGAAC+CGG 0.364838 1.2:+46663714 None:intergenic
CTGTTTGCAACGGTGGTTTA+CGG 0.378960 1.2:-46663515 MS.gene068801:CDS
CGGGGAAGAAGAAGGTTATA+TGG 0.379395 1.2:-46663312 MS.gene068801:CDS
TCGTAAAGAAGAAGAAAGAA+AGG 0.383649 1.2:-46663286 MS.gene068801:CDS
GTGGAGGTGGTGCAGCGGAG+TGG 0.384568 1.2:-46663551 MS.gene068801:CDS
CGTGAATGGAAGGGATAGTT+TGG 0.385547 1.2:-46663381 MS.gene068801:CDS
GGAGGTGGTGCAGCGGAGTG+GGG 0.386877 1.2:-46663549 MS.gene068801:CDS
CGTTGGAAGGTAGGAGAAGA+TGG 0.393190 1.2:-46663343 MS.gene068801:CDS
AAACCGTGACCACCCGGTTC+CGG 0.395240 1.2:-46663727 MS.gene068801:CDS
AAAGGGAGGAAAGAAAGAAA+AGG 0.420929 1.2:-46663268 MS.gene068801:CDS
GGGAGGAGTTGAGGCTGAGC+TGG 0.438878 1.2:-46663628 MS.gene068801:CDS
GAAAAGGGCACAAAGGAGAT+TGG 0.439397 1.2:-46663252 MS.gene068801:CDS
AACGGCTGAGATTAAACTTA+GGG 0.445872 1.2:+46663799 None:intergenic
CGGAACAGAGAGAGTTGAGT+TGG 0.450504 1.2:+46663987 None:intergenic
CAAATCAAAGAGTGCAATGA+AGG 0.454522 1.2:+46663193 None:intergenic
TCACATCCTTGTTATCTAGT+AGG 0.459978 1.2:+46663684 None:intergenic
GTCGAGTGGCAAGGCGGTGG+AGG 0.460504 1.2:-46663567 MS.gene068801:CDS
GAGTGGCAAGGCGGTGGAGG+TGG 0.463232 1.2:-46663564 MS.gene068801:CDS
GATCGATCCGGTGAGTCAAC+GGG 0.464032 1.2:-46663600 MS.gene068801:CDS
CACATACTCACACGCCTTGA+CGG 0.470491 1.2:-46664043 MS.gene068801:CDS
CAACGGCTGAGATTAAACTT+AGG 0.475204 1.2:+46663798 None:intergenic
CGTAAAGAAGAAGAAAGAAA+GGG 0.489710 1.2:-46663285 MS.gene068801:CDS
GAGAAGATGGAAGGGAATCG+GGG 0.492779 1.2:-46663330 MS.gene068801:CDS
CTGAGATTAAACTTAGGGTT+CGG 0.493437 1.2:+46663804 None:intergenic
GAAGGTCAACGAGGCTAGAC+CGG 0.497805 1.2:+46663211 None:intergenic
GAGAGAGTTGAGTTGGGAGC+AGG 0.498381 1.2:+46663994 None:intergenic
AAGCGAGAGCGGCGCCGTCA+AGG 0.500823 1.2:+46664029 None:intergenic
TAGAGAGGTTAGTTTGCAAG+TGG 0.502224 1.2:-46663423 MS.gene068801:CDS
CGGAGAACGTTGAGATTACA+TGG 0.505020 1.2:+46663900 None:intergenic
AAGGGAGGAAAGAAAGAAAA+GGG 0.505093 1.2:-46663267 MS.gene068801:CDS
GGTGGTGCAGCGGAGTGGGG+AGG 0.507878 1.2:-46663546 MS.gene068801:CDS
GCGAACCCGTGGCGTGTTGG+TGG 0.510127 1.2:+46663922 None:intergenic
CTATCTCTTCTCATCATCAA+AGG 0.510236 1.2:-46663850 MS.gene068801:CDS
AGAGGTTAGTTTGCAAGTGG+AGG 0.510549 1.2:-46663420 MS.gene068801:CDS
TTCAGCCTCCTCTGATTCGC+CGG 0.511615 1.2:+46664108 None:intergenic
ACCCGTGGCGTGTTGGTGGA+AGG 0.512531 1.2:+46663926 None:intergenic
GGAACAGAGAGAGTTGAGTT+GGG 0.512955 1.2:+46663988 None:intergenic
GGAAGGTAGGAGAAGATGGA+AGG 0.515160 1.2:-46663339 MS.gene068801:CDS
CTGTTCCGACGAACATCTCT+GGG 0.515288 1.2:-46663972 MS.gene068801:CDS
ATGGATGGAAAACACGTGAA+TGG 0.517970 1.2:-46663395 MS.gene068801:CDS
AAACGGAGAGCACCGGAACC+GGG 0.519936 1.2:+46663715 None:intergenic
AAGGGAATCGGGGAAGAAGA+AGG 0.521248 1.2:-46663320 MS.gene068801:CDS
TGCGTAAGGCGTTGGAAGGT+AGG 0.522219 1.2:-46663352 MS.gene068801:CDS
GGCCTTCCACCAACACGCCA+CGG 0.525496 1.2:-46663928 MS.gene068801:CDS
CGTGTCGAGTGGCAAGGCGG+TGG 0.531169 1.2:-46663570 MS.gene068801:CDS
TGATCGATCCGGTGAGTCAA+CGG 0.533915 1.2:-46663601 MS.gene068801:CDS
TATCTCTTCTCATCATCAAA+GGG 0.536296 1.2:-46663849 MS.gene068801:CDS
TTCACCGCCCGTTGACTCAC+CGG 0.536619 1.2:+46663593 None:intergenic
AACAGCGACGGCGACGGAGG+TGG 0.537963 1.2:-46663489 MS.gene068801:CDS
GCTTGCGGCGGAAGCGAGAG+CGG 0.539353 1.2:+46664018 None:intergenic
TTGGATTATGTCGTCGTGGA+CGG 0.539717 1.2:+46664069 None:intergenic
GCCTTCCACCAACACGCCAC+GGG 0.543520 1.2:-46663927 MS.gene068801:CDS
AGGCGGTGGAGGTGGTGCAG+CGG 0.545534 1.2:-46663556 MS.gene068801:CDS
TCAGCCTCAACTCCTCCCCT+AGG 0.546631 1.2:+46663633 None:intergenic
GAAGGTAGGAGAAGATGGAA+GGG 0.548069 1.2:-46663338 MS.gene068801:CDS
TCTAGTAGGTCAACACGAAA+CGG 0.548809 1.2:+46663698 None:intergenic
ATGGCGAACCCGTGGCGTGT+TGG 0.550542 1.2:+46663919 None:intergenic
AAAGAAGAAGAAAGAAAGGG+AGG 0.551091 1.2:-46663282 MS.gene068801:CDS
GCACCGGAACCGGGTGGTCA+CGG 0.552377 1.2:+46663724 None:intergenic
TTGCATTTCCGGCGAATCAG+AGG 0.552766 1.2:-46664116 MS.gene068801:CDS
TTGCAAGTGGAGGATATGGA+TGG 0.553223 1.2:-46663410 MS.gene068801:CDS
CAACACGAAACGGAGAGCAC+CGG 0.553484 1.2:+46663708 None:intergenic
ATGGAAAACACGTGAATGGA+AGG 0.557600 1.2:-46663391 MS.gene068801:CDS
GAAGAAAGAGCGGGAGCCAT+CGG 0.558224 1.2:+46663880 None:intergenic
GGAGAATATGGAGGTTAGAG+AGG 0.560308 1.2:-46663438 MS.gene068801:CDS
GTGTAGTGTGGTGGTGATGT+TGG 0.561708 1.2:-46663462 MS.gene068801:CDS
AAAGAAAGAAAAGGGCACAA+AGG 0.563943 1.2:-46663259 MS.gene068801:CDS
GGCGTGTGAGTATGTGAGCT+TGG 0.570856 1.2:+46664050 None:intergenic
TTGGTGGTGATGAAAACCTA+GGG 0.571174 1.2:-46663649 MS.gene068801:CDS
GAGTTGGGAGCAGGTGCTTG+CGG 0.574852 1.2:+46664003 None:intergenic
CATTTCCGGCGAATCAGAGG+AGG 0.576009 1.2:-46664113 MS.gene068801:CDS
TAGTGTGGTGGTGATGTTGG+CGG 0.576928 1.2:-46663459 MS.gene068801:CDS
AAACTGAAACCGTGACCACC+CGG 0.581030 1.2:-46663733 MS.gene068801:CDS
AAAACCTAGGGGAGGAGTTG+AGG 0.581253 1.2:-46663637 MS.gene068801:CDS
GTCGTGGACGGCGGAGAATG+TGG 0.582153 1.2:+46664081 None:intergenic
AGAGTCTGCGAAGAAAGAGC+GGG 0.584331 1.2:+46663871 None:intergenic
CGGAGAAACAGCGACGGCGA+CGG 0.589608 1.2:-46663495 MS.gene068801:CDS
GGTGAACGTGTCGAGTGGCA+AGG 0.590548 1.2:-46663576 MS.gene068801:CDS
TTGGGAGCAGGTGCTTGCGG+CGG 0.592620 1.2:+46664006 None:intergenic
AGAAACAGCGACGGCGACGG+AGG 0.596172 1.2:-46663492 MS.gene068801:CDS
GGTGAAGTTGCTGTTTGCAA+CGG 0.596822 1.2:-46663525 MS.gene068801:CDS
TAGAGTCTGCGAAGAAAGAG+CGG 0.597944 1.2:+46663870 None:intergenic
AAAACACTAAACCCTTACAA+TGG 0.599929 1.2:+46663768 None:intergenic
GTAATCTCAACGTTCTCCGA+TGG 0.609849 1.2:-46663896 MS.gene068801:CDS
GAAGTTGCTGTTTGCAACGG+TGG 0.616823 1.2:-46663522 MS.gene068801:CDS
CGGGCGGTGAACGTGTCGAG+TGG 0.620160 1.2:-46663581 MS.gene068801:CDS
GTTGGTGGTGATGAAAACCT+AGG 0.622095 1.2:-46663650 MS.gene068801:CDS
GATGTGATCAAATATCCAGT+TGG 0.627239 1.2:-46663668 MS.gene068801:CDS
GATTATGTCGTCGTGGACGG+CGG 0.638155 1.2:+46664072 None:intergenic
CTTACAATGGAAAATATCAA+CGG 0.639139 1.2:+46663781 None:intergenic
GTGATCAAATATCCAGTTGG+TGG 0.640023 1.2:-46663665 MS.gene068801:CDS
GAGATTACATGGCGAACCCG+TGG 0.640423 1.2:+46663911 None:intergenic
TGTTGACCTACTAGATAACA+AGG 0.646998 1.2:-46663690 MS.gene068801:CDS
GTTTGCCCAGAGATGTTCGT+CGG 0.658971 1.2:+46663967 None:intergenic
TGGAAAACACGTGAATGGAA+GGG 0.659109 1.2:-46663390 MS.gene068801:CDS
GGAGGTGGCGTTGTGTAGTG+TGG 0.663867 1.2:-46663474 MS.gene068801:CDS
GATGTTGGCGGAGAATATGG+AGG 0.668123 1.2:-46663447 MS.gene068801:CDS
TGGTGATGAAAACCTAGGGG+AGG 0.688286 1.2:-46663645 MS.gene068801:CDS
CAAACGCATGCTATTCTACG+TGG 0.694571 1.2:-46663949 MS.gene068801:CDS
GGTGGCGTTGTGTAGTGTGG+TGG 0.695299 1.2:-46663471 MS.gene068801:CDS
CGATCCGGTGAGTCAACGGG+CGG 0.698925 1.2:-46663597 MS.gene068801:CDS
CGGAGAGCACCGGAACCGGG+TGG 0.727565 1.2:+46663718 None:intergenic
GAACGTGTCGAGTGGCAAGG+CGG 0.733374 1.2:-46663573 MS.gene068801:CDS
GAGCTTGGATTATGTCGTCG+TGG 0.735444 1.2:+46664065 None:intergenic
GGTTTACGGAGAAACAGCGA+CGG 0.737765 1.2:-46663501 MS.gene068801:CDS
GAGTGCAATGAAGGTCAACG+AGG 0.759283 1.2:+46663202 None:intergenic
TGGTGGTGATGAAAACCTAG+GGG 0.760068 1.2:-46663648 MS.gene068801:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! CTTACAATGGAAAATATCAA+CGG + chr1.2:46663533-46663552 None:intergenic 25.0%
!! GTTGATATTTTCCATTGTAA+GGG - chr1.2:46663532-46663551 MS.gene068801:CDS 25.0%
AAAACACTAAACCCTTACAA+TGG + chr1.2:46663546-46663565 None:intergenic 30.0%
CGTAAAGAAGAAGAAAGAAA+GGG - chr1.2:46664026-46664045 MS.gene068801:CDS 30.0%
TATCTCTTCTCATCATCAAA+GGG - chr1.2:46663462-46663481 MS.gene068801:CDS 30.0%
TCGTAAAGAAGAAGAAAGAA+AGG - chr1.2:46664025-46664044 MS.gene068801:CDS 30.0%
! CGTTGATATTTTCCATTGTA+AGG - chr1.2:46663531-46663550 MS.gene068801:CDS 30.0%
!! TAGTTTGGTAATTTTGCGTA+AGG - chr1.2:46663945-46663964 MS.gene068801:CDS 30.0%
AAAGAAGAAGAAAGAAAGGG+AGG - chr1.2:46664029-46664048 MS.gene068801:CDS 35.0%
AAAGGGAGGAAAGAAAGAAA+AGG - chr1.2:46664043-46664062 MS.gene068801:CDS 35.0%
AACGGCTGAGATTAAACTTA+GGG + chr1.2:46663515-46663534 None:intergenic 35.0%
AAGGGAGGAAAGAAAGAAAA+GGG - chr1.2:46664044-46664063 MS.gene068801:CDS 35.0%
CTATCTCTTCTCATCATCAA+AGG - chr1.2:46663461-46663480 MS.gene068801:CDS 35.0%
CTGAGATTAAACTTAGGGTT+CGG + chr1.2:46663510-46663529 None:intergenic 35.0%
GATATGATGTGTTTGCTTAC+CGG - chr1.2:46664081-46664100 MS.gene068801:CDS 35.0%
GATGTGATCAAATATCCAGT+TGG - chr1.2:46663643-46663662 MS.gene068801:CDS 35.0%
TGTTGACCTACTAGATAACA+AGG - chr1.2:46663621-46663640 MS.gene068801:CDS 35.0%
! AAAGAAAGAAAAGGGCACAA+AGG - chr1.2:46664052-46664071 MS.gene068801:CDS 35.0%
! CAAATCAAAGAGTGCAATGA+AGG + chr1.2:46664121-46664140 None:intergenic 35.0%
! TCACATCCTTGTTATCTAGT+AGG + chr1.2:46663630-46663649 None:intergenic 35.0%
ATGGAAAACACGTGAATGGA+AGG - chr1.2:46663920-46663939 MS.gene068801:CDS 40.0%
ATGGATGGAAAACACGTGAA+TGG - chr1.2:46663916-46663935 MS.gene068801:CDS 40.0%
CAACGGCTGAGATTAAACTT+AGG + chr1.2:46663516-46663535 None:intergenic 40.0%
GTGATCAAATATCCAGTTGG+TGG - chr1.2:46663646-46663665 MS.gene068801:CDS 40.0%
TCTAGTAGGTCAACACGAAA+CGG + chr1.2:46663616-46663635 None:intergenic 40.0%
TGGAAAACACGTGAATGGAA+GGG - chr1.2:46663921-46663940 MS.gene068801:CDS 40.0%
! TAGTTTGCAAGTGGAGGATA+TGG - chr1.2:46663897-46663916 MS.gene068801:CDS 40.0%
!! TAGAGAGGTTAGTTTGCAAG+TGG - chr1.2:46663888-46663907 MS.gene068801:CDS 40.0%
!! TTGGTGGTGATGAAAACCTA+GGG - chr1.2:46663662-46663681 MS.gene068801:CDS 40.0%
AGGAGAAGATGGAAGGGAAT+CGG - chr1.2:46663979-46663998 MS.gene068801:CDS 45.0%
CAAACGCATGCTATTCTACG+TGG - chr1.2:46663362-46663381 MS.gene068801:CDS 45.0%
CGGAGAACGTTGAGATTACA+TGG + chr1.2:46663414-46663433 None:intergenic 45.0%
CGGGGAAGAAGAAGGTTATA+TGG - chr1.2:46663999-46664018 MS.gene068801:CDS 45.0%
CGTGAATGGAAGGGATAGTT+TGG - chr1.2:46663930-46663949 MS.gene068801:CDS 45.0%
CTGTTTGCAACGGTGGTTTA+CGG - chr1.2:46663796-46663815 MS.gene068801:CDS 45.0%
GAAGGTAGGAGAAGATGGAA+GGG - chr1.2:46663973-46663992 MS.gene068801:CDS 45.0%
GGAACAGAGAGAGTTGAGTT+GGG + chr1.2:46663326-46663345 None:intergenic 45.0%
GGAGAATATGGAGGTTAGAG+AGG - chr1.2:46663873-46663892 MS.gene068801:CDS 45.0%
GTAATCTCAACGTTCTCCGA+TGG - chr1.2:46663415-46663434 MS.gene068801:CDS 45.0%
TAGAGTCTGCGAAGAAAGAG+CGG + chr1.2:46663444-46663463 None:intergenic 45.0%
TTGCAAGTGGAGGATATGGA+TGG - chr1.2:46663901-46663920 MS.gene068801:CDS 45.0%
TTGGATTATGTCGTCGTGGA+CGG + chr1.2:46663245-46663264 None:intergenic 45.0%
! AGGTTTTCATCACCACCAAC+TGG + chr1.2:46663661-46663680 None:intergenic 45.0%
! GAAAAGGGCACAAAGGAGAT+TGG - chr1.2:46664059-46664078 MS.gene068801:CDS 45.0%
! GGTAATTTTGCGTAAGGCGT+TGG - chr1.2:46663951-46663970 MS.gene068801:CDS 45.0%
! TGGTGGTGATGAAAACCTAG+GGG - chr1.2:46663663-46663682 MS.gene068801:CDS 45.0%
!! AGAGGTTAGTTTGCAAGTGG+AGG - chr1.2:46663891-46663910 MS.gene068801:CDS 45.0%
!! GAGCTGGATTTTGATCGATC+CGG - chr1.2:46663699-46663718 MS.gene068801:CDS 45.0%
!! GGTGAAGTTGCTGTTTGCAA+CGG - chr1.2:46663786-46663805 MS.gene068801:CDS 45.0%
!! GTTGGTGGTGATGAAAACCT+AGG - chr1.2:46663661-46663680 MS.gene068801:CDS 45.0%
!!! ATTTTGCGTAAGGCGTTGGA+AGG - chr1.2:46663955-46663974 MS.gene068801:CDS 45.0%
AAAACCTAGGGGAGGAGTTG+AGG - chr1.2:46663674-46663693 MS.gene068801:CDS 50.0%
AAACTGAAACCGTGACCACC+CGG - chr1.2:46663578-46663597 MS.gene068801:CDS 50.0%
AAGGGAATCGGGGAAGAAGA+AGG - chr1.2:46663991-46664010 MS.gene068801:CDS 50.0%
AGAGTCTGCGAAGAAAGAGC+GGG + chr1.2:46663443-46663462 None:intergenic 50.0%
CACATACTCACACGCCTTGA+CGG - chr1.2:46663268-46663287 MS.gene068801:CDS 50.0%
CGGAACAGAGAGAGTTGAGT+TGG + chr1.2:46663327-46663346 None:intergenic 50.0%
CGTTGGAAGGTAGGAGAAGA+TGG - chr1.2:46663968-46663987 MS.gene068801:CDS 50.0%
CTGTTCCGACGAACATCTCT+GGG - chr1.2:46663339-46663358 MS.gene068801:CDS 50.0%
GAGAAGATGGAAGGGAATCG+GGG - chr1.2:46663981-46664000 MS.gene068801:CDS 50.0%
GAGCTTGGATTATGTCGTCG+TGG + chr1.2:46663249-46663268 None:intergenic 50.0%
GAGTGCAATGAAGGTCAACG+AGG + chr1.2:46664112-46664131 None:intergenic 50.0%
GATGTTGGCGGAGAATATGG+AGG - chr1.2:46663864-46663883 MS.gene068801:CDS 50.0%
GGAAGGTAGGAGAAGATGGA+AGG - chr1.2:46663972-46663991 MS.gene068801:CDS 50.0%
GGAGAAGATGGAAGGGAATC+GGG - chr1.2:46663980-46663999 MS.gene068801:CDS 50.0%
GGTGATGTTGGCGGAGAATA+TGG - chr1.2:46663861-46663880 MS.gene068801:CDS 50.0%
GGTTTACGGAGAAACAGCGA+CGG - chr1.2:46663810-46663829 MS.gene068801:CDS 50.0%
GTTTGCCCAGAGATGTTCGT+CGG + chr1.2:46663347-46663366 None:intergenic 50.0%
TCTGTTCCGACGAACATCTC+TGG - chr1.2:46663338-46663357 MS.gene068801:CDS 50.0%
TGATCGATCCGGTGAGTCAA+CGG - chr1.2:46663710-46663729 MS.gene068801:CDS 50.0%
TTGCATTTCCGGCGAATCAG+AGG - chr1.2:46663195-46663214 MS.gene068801:CDS 50.0%
! GTGTAGTGTGGTGGTGATGT+TGG - chr1.2:46663849-46663868 MS.gene068801:CDS 50.0%
! TAGTGTGGTGGTGATGTTGG+CGG - chr1.2:46663852-46663871 MS.gene068801:CDS 50.0%
! TGGTGATGAAAACCTAGGGG+AGG - chr1.2:46663666-46663685 MS.gene068801:CDS 50.0%
!! GAAGTTGCTGTTTGCAACGG+TGG - chr1.2:46663789-46663808 MS.gene068801:CDS 50.0%
CATTTCCGGCGAATCAGAGG+AGG - chr1.2:46663198-46663217 MS.gene068801:CDS 55.0%
GAAGAAAGAGCGGGAGCCAT+CGG + chr1.2:46663434-46663453 None:intergenic 55.0%
GAAGGTCAACGAGGCTAGAC+CGG + chr1.2:46664103-46664122 None:intergenic 55.0%
GAGATTACATGGCGAACCCG+TGG + chr1.2:46663403-46663422 None:intergenic 55.0%
GATCGATCCGGTGAGTCAAC+GGG - chr1.2:46663711-46663730 MS.gene068801:CDS 55.0%
GATTATGTCGTCGTGGACGG+CGG + chr1.2:46663242-46663261 None:intergenic 55.0%
GGCGTGTGAGTATGTGAGCT+TGG + chr1.2:46663264-46663283 None:intergenic 55.0%
! CAACACGAAACGGAGAGCAC+CGG + chr1.2:46663606-46663625 None:intergenic 55.0%
! TTCAGCCTCCTCTGATTCGC+CGG + chr1.2:46663206-46663225 None:intergenic 55.0%
!! GAGAGAGTTGAGTTGGGAGC+AGG + chr1.2:46663320-46663339 None:intergenic 55.0%
!! TGCGTAAGGCGTTGGAAGGT+AGG - chr1.2:46663959-46663978 MS.gene068801:CDS 55.0%
AAACCGTGACCACCCGGTTC+CGG - chr1.2:46663584-46663603 MS.gene068801:CDS 60.0%
GAACGTGTCGAGTGGCAAGG+CGG - chr1.2:46663738-46663757 MS.gene068801:CDS 60.0%
GAGTTGGGAGCAGGTGCTTG+CGG + chr1.2:46663311-46663330 None:intergenic 60.0%
GGAGGTGGCGTTGTGTAGTG+TGG - chr1.2:46663837-46663856 MS.gene068801:CDS 60.0%
GGTGAACGTGTCGAGTGGCA+AGG - chr1.2:46663735-46663754 MS.gene068801:CDS 60.0%
GGTGGCGTTGTGTAGTGTGG+TGG - chr1.2:46663840-46663859 MS.gene068801:CDS 60.0%
TCAGCCTCAACTCCTCCCCT+AGG + chr1.2:46663681-46663700 None:intergenic 60.0%
!! AAACGGAGAGCACCGGAACC+GGG + chr1.2:46663599-46663618 None:intergenic 60.0%
!! GAAACGGAGAGCACCGGAAC+CGG + chr1.2:46663600-46663619 None:intergenic 60.0%
!! TTCACCGCCCGTTGACTCAC+CGG + chr1.2:46663721-46663740 None:intergenic 60.0%
AGAAACAGCGACGGCGACGG+AGG - chr1.2:46663819-46663838 MS.gene068801:CDS 65.0%
ATGGCGAACCCGTGGCGTGT+TGG + chr1.2:46663395-46663414 None:intergenic 65.0%
CGATCCGGTGAGTCAACGGG+CGG - chr1.2:46663714-46663733 MS.gene068801:CDS 65.0%
CGGAGAAACAGCGACGGCGA+CGG - chr1.2:46663816-46663835 MS.gene068801:CDS 65.0%
GCCTTCCACCAACACGCCAC+GGG - chr1.2:46663384-46663403 MS.gene068801:CDS 65.0%
GGCCTTCCACCAACACGCCA+CGG - chr1.2:46663383-46663402 MS.gene068801:CDS 65.0%
GGGAGGAGTTGAGGCTGAGC+TGG - chr1.2:46663683-46663702 MS.gene068801:CDS 65.0%
GTCGTGGACGGCGGAGAATG+TGG + chr1.2:46663233-46663252 None:intergenic 65.0%
TGGAGGTGGTGCAGCGGAGT+GGG - chr1.2:46663761-46663780 MS.gene068801:CDS 65.0%
TTGGGAGCAGGTGCTTGCGG+CGG + chr1.2:46663308-46663327 None:intergenic 65.0%
! ACCCGTGGCGTGTTGGTGGA+AGG + chr1.2:46663388-46663407 None:intergenic 65.0%
AACAGCGACGGCGACGGAGG+TGG - chr1.2:46663822-46663841 MS.gene068801:CDS 70.0%
AAGCGAGAGCGGCGCCGTCA+AGG + chr1.2:46663285-46663304 None:intergenic 70.0%
AGGCGGTGGAGGTGGTGCAG+CGG - chr1.2:46663755-46663774 MS.gene068801:CDS 70.0%
CGGGCGGTGAACGTGTCGAG+TGG - chr1.2:46663730-46663749 MS.gene068801:CDS 70.0%
CGTGTCGAGTGGCAAGGCGG+TGG - chr1.2:46663741-46663760 MS.gene068801:CDS 70.0%
GAGTGGCAAGGCGGTGGAGG+TGG - chr1.2:46663747-46663766 MS.gene068801:CDS 70.0%
GCACCGGAACCGGGTGGTCA+CGG + chr1.2:46663590-46663609 None:intergenic 70.0%
GCGAACCCGTGGCGTGTTGG+TGG + chr1.2:46663392-46663411 None:intergenic 70.0%
GCTTGCGGCGGAAGCGAGAG+CGG + chr1.2:46663296-46663315 None:intergenic 70.0%
GGAGGTGGTGCAGCGGAGTG+GGG - chr1.2:46663762-46663781 MS.gene068801:CDS 70.0%
GTCGAGTGGCAAGGCGGTGG+AGG - chr1.2:46663744-46663763 MS.gene068801:CDS 70.0%
GTGGAGGTGGTGCAGCGGAG+TGG - chr1.2:46663760-46663779 MS.gene068801:CDS 70.0%
GGTGGTGCAGCGGAGTGGGG+AGG - chr1.2:46663765-46663784 MS.gene068801:CDS 75.0%
!! CGGAGAGCACCGGAACCGGG+TGG + chr1.2:46663596-46663615 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 46663190 46664143 46663190 ID=MS.gene068801
chr1.2 mRNA 46663190 46664143 46663190 ID=MS.gene068801.t1;Parent=MS.gene068801
chr1.2 exon 46663190 46664143 46663190 ID=MS.gene068801.t1.exon1;Parent=MS.gene068801.t1
chr1.2 CDS 46663190 46664143 46663190 ID=cds.MS.gene068801.t1;Parent=MS.gene068801.t1
Gene Sequence

>MS.gene068801

ATGATTTGCATTTCCGGCGAATCAGAGGAGGCTGAAACAACCACATTCTCCGCCGTCCACGACGACATAATCCAAGCTCACATACTCACACGCCTTGACGGCGCCGCTCTCGCTTCCGCCGCAAGCACCTGCTCCCAACTCAACTCTCTCTGTTCCGACGAACATCTCTGGGCAAACGCATGCTATTCTACGTGGCCTTCCACCAACACGCCACGGGTTCGCCATGTAATCTCAACGTTCTCCGATGGCTCCCGCTCTTTCTTCGCAGACTCTATCTCTTCTCATCATCAAAGGGATACAGCTTCAATAAATCATGACCGAACCCTAAGTTTAATCTCAGCCGTTGATATTTTCCATTGTAAGGGTTTAGTGTTTTCGAAAGTTGTTGAAACTGAAACCGTGACCACCCGGTTCCGGTGCTCTCCGTTTCGTGTTGACCTACTAGATAACAAGGATGTGATCAAATATCCAGTTGGTGGTGATGAAAACCTAGGGGAGGAGTTGAGGCTGAGCTGGATTTTGATCGATCCGGTGAGTCAACGGGCGGTGAACGTGTCGAGTGGCAAGGCGGTGGAGGTGGTGCAGCGGAGTGGGGAGGTGAAGTTGCTGTTTGCAACGGTGGTTTACGGAGAAACAGCGACGGCGACGGAGGTGGCGTTGTGTAGTGTGGTGGTGATGTTGGCGGAGAATATGGAGGTTAGAGAGGTTAGTTTGCAAGTGGAGGATATGGATGGAAAACACGTGAATGGAAGGGATAGTTTGGTAATTTTGCGTAAGGCGTTGGAAGGTAGGAGAAGATGGAAGGGAATCGGGGAAGAAGAAGGTTATATGGAATTCGTAAAGAAGAAGAAAGAAAGGGAGGAAAGAAAGAAAAGGGCACAAAGGAGATTGGATATGATGTGTTTGCTTACCGGTCTAGCCTCGTTGACCTTCATTGCACTCTTTGATTTGTGA
Protein sequence

>MS.gene068801.t1

MICISGESEEAETTTFSAVHDDIIQAHILTRLDGAALASAASTCSQLNSLCSDEHLWANACYSTWPSTNTPRVRHVISTFSDGSRSFFADSISSHHQRDTASINHDRTLSLISAVDIFHCKGLVFSKVVETETVTTRFRCSPFRVDLLDNKDVIKYPVGGDENLGEELRLSWILIDPVSQRAVNVSSGKAVEVVQRSGEVKLLFATVVYGETATATEVALCSVVVMLAENMEVREVSLQVEDMDGKHVNGRDSLVILRKALEGRRRWKGIGEEEGYMEFVKKKKEREERKKRAQRRLDMMCLLTGLASLTFIALFDL