Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069166.t1 | XP_003612958.1 | 96.1 | 178 | 7 | 0 | 1 | 178 | 62 | 239 | 1.20E-66 | 262.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069166.t1 | Q9SZJ6 | 68.5 | 92 | 28 | 1 | 1 | 91 | 62 | 153 | 1.1e-26 | 121.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069166.t1 | A9YWS1 | 96.1 | 178 | 7 | 0 | 1 | 178 | 62 | 239 | 9.0e-67 | 262.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene069166 | 0.813737 | 2.20E-51 | -1.69E-46 |
| MS.gene049813 | MS.gene069166 | 0.815431 | 9.28E-52 | -1.69E-46 |
| MS.gene051440 | MS.gene069166 | 0.804584 | 2.01E-49 | -1.69E-46 |
| MS.gene051844 | MS.gene069166 | 0.822806 | 1.94E-53 | -1.69E-46 |
| MS.gene052211 | MS.gene069166 | 0.855924 | 4.55E-62 | -1.69E-46 |
| MS.gene052212 | MS.gene069166 | 0.816232 | 6.15E-52 | -1.69E-46 |
| MS.gene052606 | MS.gene069166 | 0.822985 | 1.77E-53 | -1.69E-46 |
| MS.gene054120 | MS.gene069166 | 0.806795 | 6.91E-50 | -1.69E-46 |
| MS.gene054146 | MS.gene069166 | 0.830431 | 2.95E-55 | -1.69E-46 |
| MS.gene055139 | MS.gene069166 | 0.800473 | 1.42E-48 | -1.69E-46 |
| MS.gene055240 | MS.gene069166 | 0.83587 | 1.30E-56 | -1.69E-46 |
| MS.gene055977 | MS.gene069166 | 0.803316 | 3.69E-49 | -1.69E-46 |
| MS.gene056218 | MS.gene069166 | 0.881831 | 1.73E-70 | -1.69E-46 |
| MS.gene056298 | MS.gene069166 | 0.802125 | 6.51E-49 | -1.69E-46 |
| MS.gene056748 | MS.gene069166 | 0.835709 | 1.43E-56 | -1.69E-46 |
| MS.gene057550 | MS.gene069166 | 0.812638 | 3.83E-51 | -1.69E-46 |
| MS.gene059955 | MS.gene069166 | 0.808223 | 3.44E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069166.t1 | MTR_5g031000 | 95.506 | 178 | 8 | 0 | 1 | 178 | 62 | 239 | 2.34e-124 | 350 |
| MS.gene069166.t1 | MTR_5g031000 | 87.640 | 178 | 8 | 1 | 1 | 178 | 62 | 225 | 2.05e-110 | 314 |
| MS.gene069166.t1 | MTR_5g066990 | 57.955 | 176 | 67 | 4 | 1 | 174 | 6 | 176 | 1.67e-60 | 186 |
| MS.gene069166.t1 | MTR_2g009890 | 56.000 | 175 | 67 | 3 | 1 | 172 | 62 | 229 | 1.82e-56 | 179 |
| MS.gene069166.t1 | MTR_5g066990 | 53.409 | 176 | 61 | 5 | 1 | 174 | 6 | 162 | 3.77e-52 | 164 |
| MS.gene069166.t1 | MTR_4g092990 | 41.727 | 139 | 75 | 1 | 26 | 164 | 5 | 137 | 9.67e-30 | 106 |
| MS.gene069166.t1 | MTR_2g017865 | 35.455 | 110 | 69 | 1 | 1 | 108 | 77 | 186 | 4.72e-14 | 68.6 |
| MS.gene069166.t1 | MTR_8g087860 | 34.234 | 111 | 71 | 1 | 1 | 109 | 78 | 188 | 3.03e-13 | 65.9 |
| MS.gene069166.t1 | MTR_3g005530 | 35.135 | 111 | 70 | 1 | 1 | 109 | 62 | 172 | 1.16e-12 | 63.9 |
| MS.gene069166.t1 | MTR_7g075850 | 32.667 | 150 | 86 | 4 | 4 | 152 | 67 | 202 | 2.41e-12 | 63.5 |
| MS.gene069166.t1 | MTR_4g109830 | 34.951 | 103 | 65 | 1 | 1 | 101 | 63 | 165 | 5.24e-12 | 62.4 |
| MS.gene069166.t1 | MTR_2g461760 | 33.636 | 110 | 71 | 1 | 1 | 108 | 1 | 110 | 6.20e-12 | 61.2 |
| MS.gene069166.t1 | MTR_2g461760 | 33.636 | 110 | 71 | 1 | 1 | 108 | 1 | 110 | 6.48e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069166.t1 | AT4G37940 | 52.273 | 176 | 73 | 3 | 1 | 175 | 1 | 166 | 6.41e-54 | 169 |
| MS.gene069166.t1 | AT2G22630 | 51.429 | 175 | 75 | 3 | 1 | 174 | 62 | 227 | 1.30e-53 | 170 |
| MS.gene069166.t1 | AT2G22630 | 51.429 | 175 | 75 | 3 | 1 | 174 | 62 | 227 | 1.30e-53 | 170 |
| MS.gene069166.t1 | AT4G37940 | 52.273 | 176 | 73 | 3 | 1 | 175 | 62 | 227 | 4.90e-53 | 169 |
| MS.gene069166.t1 | AT3G57230 | 51.429 | 175 | 78 | 5 | 1 | 174 | 62 | 230 | 2.42e-50 | 162 |
| MS.gene069166.t1 | AT3G57230 | 51.429 | 175 | 78 | 5 | 1 | 174 | 62 | 230 | 2.42e-50 | 162 |
| MS.gene069166.t1 | AT3G57230 | 63.415 | 123 | 44 | 1 | 1 | 122 | 28 | 150 | 2.78e-50 | 161 |
| MS.gene069166.t1 | AT3G57230 | 63.415 | 123 | 44 | 1 | 1 | 122 | 28 | 150 | 2.78e-50 | 161 |
| MS.gene069166.t1 | AT4G37940 | 47.159 | 176 | 68 | 3 | 1 | 175 | 62 | 213 | 5.32e-42 | 140 |
| MS.gene069166.t1 | AT2G14210 | 49.390 | 164 | 76 | 4 | 1 | 163 | 63 | 220 | 4.60e-35 | 123 |
| MS.gene069166.t1 | AT2G14210 | 49.390 | 164 | 76 | 4 | 1 | 163 | 63 | 220 | 6.17e-35 | 122 |
| MS.gene069166.t1 | AT4G37940 | 68.750 | 80 | 24 | 1 | 1 | 79 | 62 | 141 | 1.17e-31 | 112 |
| MS.gene069166.t1 | AT3G57230 | 64.286 | 84 | 29 | 1 | 1 | 83 | 62 | 145 | 4.95e-30 | 107 |
| MS.gene069166.t1 | AT4G09960 | 32.867 | 143 | 93 | 2 | 1 | 140 | 62 | 204 | 8.40e-16 | 72.8 |
| MS.gene069166.t1 | AT4G09960 | 32.867 | 143 | 93 | 2 | 1 | 140 | 72 | 214 | 8.95e-16 | 72.8 |
| MS.gene069166.t1 | AT4G09960 | 32.867 | 143 | 93 | 2 | 1 | 140 | 63 | 205 | 9.17e-16 | 72.8 |
| MS.gene069166.t1 | AT4G09960 | 32.867 | 143 | 93 | 2 | 1 | 140 | 88 | 230 | 1.24e-15 | 72.8 |
| MS.gene069166.t1 | AT2G42830 | 28.902 | 173 | 99 | 5 | 1 | 165 | 77 | 233 | 5.23e-14 | 68.2 |
| MS.gene069166.t1 | AT2G42830 | 28.571 | 175 | 99 | 5 | 1 | 165 | 77 | 235 | 6.11e-14 | 68.2 |
| MS.gene069166.t1 | AT4G18960 | 35.455 | 110 | 69 | 1 | 1 | 108 | 78 | 187 | 8.16e-14 | 67.8 |
| MS.gene069166.t1 | AT4G18960 | 35.455 | 110 | 69 | 1 | 1 | 108 | 64 | 173 | 8.30e-14 | 67.4 |
| MS.gene069166.t1 | AT4G18960 | 35.455 | 110 | 69 | 1 | 1 | 108 | 64 | 173 | 8.30e-14 | 67.4 |
| MS.gene069166.t1 | AT4G18960 | 35.714 | 112 | 70 | 1 | 1 | 110 | 64 | 175 | 8.56e-14 | 66.6 |
| MS.gene069166.t1 | AT4G09960 | 33.784 | 148 | 87 | 4 | 1 | 139 | 157 | 302 | 1.17e-13 | 68.2 |
| MS.gene069166.t1 | AT4G09960 | 32.168 | 143 | 80 | 3 | 1 | 140 | 62 | 190 | 9.72e-13 | 64.3 |
| MS.gene069166.t1 | AT5G60910 | 24.571 | 175 | 120 | 3 | 1 | 163 | 1 | 175 | 4.95e-12 | 61.6 |
| MS.gene069166.t1 | AT1G26310 | 32.800 | 125 | 76 | 3 | 1 | 117 | 63 | 187 | 6.65e-12 | 62.4 |
| MS.gene069166.t1 | AT5G60910 | 24.571 | 175 | 120 | 3 | 1 | 163 | 63 | 237 | 1.14e-11 | 61.6 |
| MS.gene069166.t1 | AT2G45650 | 35.106 | 94 | 60 | 1 | 1 | 93 | 62 | 155 | 1.56e-11 | 61.2 |
| MS.gene069166.t1 | AT1G69120 | 32.727 | 110 | 72 | 2 | 1 | 108 | 1 | 110 | 2.17e-11 | 60.1 |
| MS.gene069166.t1 | AT3G61120 | 36.667 | 90 | 57 | 0 | 4 | 93 | 65 | 154 | 3.32e-11 | 60.5 |
| MS.gene069166.t1 | AT1G69120 | 32.727 | 110 | 72 | 2 | 1 | 108 | 63 | 172 | 3.61e-11 | 60.1 |
| MS.gene069166.t1 | AT1G69120 | 32.727 | 110 | 72 | 2 | 1 | 108 | 63 | 172 | 3.69e-11 | 60.5 |
| MS.gene069166.t1 | AT3G58780 | 31.250 | 112 | 71 | 2 | 1 | 108 | 83 | 192 | 7.72e-11 | 59.3 |
| MS.gene069166.t1 | AT3G58780 | 31.250 | 112 | 71 | 2 | 1 | 108 | 77 | 186 | 7.80e-11 | 59.3 |
Find 33 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATGGGAGAACAGCTTTA+TGG | 0.252080 | 5.3:-20088002 | MS.gene069166:CDS |
| GTTGATTCTCTAGGTCTTGT+AGG | 0.264680 | 5.3:+20087964 | None:intergenic |
| CATACCTTGACTTCAGATTC+TGG | 0.269362 | 5.3:+20088888 | None:intergenic |
| ATTCTGGATTTGTCCCTTGT+TGG | 0.336243 | 5.3:+20088904 | None:intergenic |
| AAACACACAACTACACAAAA+AGG | 0.340273 | 5.3:-20087625 | MS.gene069166:intron |
| TTACCTTTCGGTTCAGCTCT+TGG | 0.342679 | 5.3:+20087798 | None:intergenic |
| CCAAGGAGTTCGCATGAAAA+AGG | 0.352891 | 5.3:-20087928 | MS.gene069166:intron |
| CAATTTCCATACGGTGTTCA+TGG | 0.363241 | 5.3:-20087302 | MS.gene069166:CDS |
| TTGAGTTCATAGGCAATTGA+TGG | 0.413482 | 5.3:-20088018 | MS.gene069166:intron |
| CACAATATTCTTGCTCAGGC+TGG | 0.421967 | 5.3:+20087237 | None:intergenic |
| TGAAGTTGAAATAATGTTTG+TGG | 0.440444 | 5.3:+20087266 | None:intergenic |
| GTCTCACAATATTCTTGCTC+AGG | 0.460316 | 5.3:+20087233 | None:intergenic |
| ATTGAAATGTCGTAGGTGTA+TGG | 0.485215 | 5.3:-20087371 | MS.gene069166:intron |
| ACAAGACCTAGAGAATCAAC+TGG | 0.503105 | 5.3:-20087961 | MS.gene069166:CDS |
| TAAGTTCCAGTTGATTCTCT+AGG | 0.509792 | 5.3:+20087955 | None:intergenic |
| ACAGGGAAACATAATCCATC+AGG | 0.520605 | 5.3:-20087691 | MS.gene069166:intron |
| CATAATCCATCAGGAAAATG+TGG | 0.527713 | 5.3:-20087682 | MS.gene069166:CDS |
| CCATACGGTGTTCATGGAGG+AGG | 0.529836 | 5.3:-20087296 | MS.gene069166:CDS |
| CCTCCTCCATGAACACCGTA+TGG | 0.536688 | 5.3:+20087296 | None:intergenic |
| TGAGTTCATAGGCAATTGAT+GGG | 0.544313 | 5.3:-20088017 | MS.gene069166:intron |
| CAAGAATATTGTGAGACCTC+AGG | 0.548980 | 5.3:-20087227 | MS.gene069166:CDS |
| AAATGTGGAGCTCTATAAGA+AGG | 0.555562 | 5.3:-20087667 | MS.gene069166:CDS |
| GCATTTGTTCAATTTCCATA+CGG | 0.559750 | 5.3:-20087311 | MS.gene069166:CDS |
| TGTTGCACTTGCACTGCCTG+AGG | 0.561931 | 5.3:+20087211 | None:intergenic |
| AAATCCAGAATCTGAAGTCA+AGG | 0.573093 | 5.3:-20088892 | MS.gene069166:intron |
| CAACTGGAACTTAGCCTCCA+AGG | 0.574769 | 5.3:-20087945 | MS.gene069166:CDS |
| AAAGTCTACAAGAAAACCAT+AGG | 0.574987 | 5.3:-20088120 | MS.gene069166:intron |
| TGAGAGATATAACATTTGCA+AGG | 0.603510 | 5.3:-20088931 | MS.gene069166:CDS |
| AATCCAAGAGCTGAACCGAA+AGG | 0.649030 | 5.3:-20087801 | MS.gene069166:intron |
| ATTTGCAAGGAAGACCAACA+AGG | 0.655433 | 5.3:-20088918 | MS.gene069166:CDS |
| TTTGCAAGGAAGACCAACAA+GGG | 0.670312 | 5.3:-20088917 | MS.gene069166:CDS |
| TTTCCATACGGTGTTCATGG+AGG | 0.673202 | 5.3:-20087299 | MS.gene069166:CDS |
| AATGTCGTAGGTGTATGGCA+CGG | 0.795308 | 5.3:-20087366 | MS.gene069166:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGATATATTTAATGCAT+GGG | + | chr5.3:20087583-20087602 | None:intergenic | 15.0% |
| !! | TTATTCATGAATTTATTGAA+TGG | - | chr5.3:20087346-20087365 | MS.gene069166:CDS | 15.0% |
| !! | TTCATGAATAAACAAAAAAA+TGG | + | chr5.3:20087337-20087356 | None:intergenic | 15.0% |
| !! | AAAAGGAAACAAAATGTTAT+TGG | + | chr5.3:20087932-20087951 | None:intergenic | 20.0% |
| !! | ATCAAGTAAAATAATGTCAA+TGG | + | chr5.3:20087961-20087980 | None:intergenic | 20.0% |
| !! | ATTGATATATTTAATGCATG+GGG | + | chr5.3:20087582-20087601 | None:intergenic | 20.0% |
| !! | CAATTGATATATTTAATGCA+TGG | + | chr5.3:20087584-20087603 | None:intergenic | 20.0% |
| !! | TCTCAAATTATTATCTGTAT+TGG | + | chr5.3:20087719-20087738 | None:intergenic | 20.0% |
| !!! | TTTTAATTTCCTTAACTACA+GGG | - | chr5.3:20088442-20088461 | MS.gene069166:intron | 20.0% |
| ! | AAGTTACATAAAATAGCAGT+TGG | - | chr5.3:20088625-20088644 | MS.gene069166:intron | 25.0% |
| ! | AATGTCAATGGTTAATGAAA+AGG | + | chr5.3:20087949-20087968 | None:intergenic | 25.0% |
| ! | AATTATCTTGATCAAGTAAG+TGG | + | chr5.3:20088260-20088279 | None:intergenic | 25.0% |
| ! | ACATAATTCAGTGTAATCAT+AGG | - | chr5.3:20087744-20087763 | MS.gene069166:intron | 25.0% |
| ! | CATATTTCATATCTGATAGT+AGG | - | chr5.3:20087890-20087909 | MS.gene069166:intron | 25.0% |
| ! | TGAAGTTGAAATAATGTTTG+TGG | + | chr5.3:20088887-20088906 | None:intergenic | 25.0% |
| !! | GTAAATTATATGCCCATTTT+GGG | + | chr5.3:20087462-20087481 | None:intergenic | 25.0% |
| !! | TAAATTATATGCCCATTTTG+GGG | + | chr5.3:20087461-20087480 | None:intergenic | 25.0% |
| !! | TGTAAATTATATGCCCATTT+TGG | + | chr5.3:20087463-20087482 | None:intergenic | 25.0% |
| !!! | GTTTTAATTTCCTTAACTAC+AGG | - | chr5.3:20088441-20088460 | MS.gene069166:intron | 25.0% |
| !!! | TACTTGATAACTGATAGTTT+TGG | - | chr5.3:20087973-20087992 | MS.gene069166:CDS | 25.0% |
| !!! | TGATTCAACTTGTTAATTTC+TGG | + | chr5.3:20088299-20088318 | None:intergenic | 25.0% |
| !!! | TTCCTTAATTTCTAGTGTTT+AGG | + | chr5.3:20087625-20087644 | None:intergenic | 25.0% |
| AAACACACAACTACACAAAA+AGG | - | chr5.3:20088525-20088544 | MS.gene069166:intron | 30.0% | |
| AAAGTCTACAAGAAAACCAT+AGG | - | chr5.3:20088030-20088049 | MS.gene069166:intron | 30.0% | |
| AATGTTAGTGCTCTTATACA+TGG | + | chr5.3:20088112-20088131 | None:intergenic | 30.0% | |
| ATGCTGAATGAATTAGTTGA+AGG | + | chr5.3:20088061-20088080 | None:intergenic | 30.0% | |
| ATTATGTTTCCCTGTAGTTA+AGG | + | chr5.3:20088454-20088473 | None:intergenic | 30.0% | |
| GACATAATAGTTATGAAGCA+CGG | - | chr5.3:20087652-20087671 | MS.gene069166:CDS | 30.0% | |
| GCATTTGTTCAATTTCCATA+CGG | - | chr5.3:20088839-20088858 | MS.gene069166:intron | 30.0% | |
| GTGATGTAACTAGATATCTT+TGG | - | chr5.3:20087488-20087507 | MS.gene069166:intron | 30.0% | |
| GTTATTGGATGATATTCAAC+TGG | + | chr5.3:20087917-20087936 | None:intergenic | 30.0% | |
| TGAGAGATATAACATTTGCA+AGG | - | chr5.3:20087219-20087238 | MS.gene069166:CDS | 30.0% | |
| TGCCTAAACACTAGAAATTA+AGG | - | chr5.3:20087620-20087639 | MS.gene069166:intron | 30.0% | |
| !! | AAGTTTTGACAGTTGAAAGA+TGG | + | chr5.3:20087515-20087534 | None:intergenic | 30.0% |
| !! | AGTTTTGACAGTTGAAAGAT+GGG | + | chr5.3:20087514-20087533 | None:intergenic | 30.0% |
| !!! | ATAACTGATAGTTTTGGCAA+AGG | - | chr5.3:20087979-20087998 | MS.gene069166:CDS | 30.0% |
| !!! | CACTAACATTTTGAGTTCAT+AGG | - | chr5.3:20088122-20088141 | MS.gene069166:CDS | 30.0% |
| !!! | TAACTGATAGTTTTGGCAAA+GGG | - | chr5.3:20087980-20087999 | MS.gene069166:CDS | 30.0% |
| AAATGTGGAGCTCTATAAGA+AGG | - | chr5.3:20088483-20088502 | MS.gene069166:intron | 35.0% | |
| ACTAATCTTCTCCCCAAAAT+GGG | - | chr5.3:20087447-20087466 | MS.gene069166:intron | 35.0% | |
| AGCTATTATGCTATGAAGCA+CGG | + | chr5.3:20087834-20087853 | None:intergenic | 35.0% | |
| ATTGAAATGTCGTAGGTGTA+TGG | - | chr5.3:20088779-20088798 | MS.gene069166:intron | 35.0% | |
| CATAATCCATCAGGAAAATG+TGG | - | chr5.3:20088468-20088487 | MS.gene069166:intron | 35.0% | |
| CATCACATTCACTTAAGCTT+AGG | - | chr5.3:20088741-20088760 | MS.gene069166:intron | 35.0% | |
| TACTAATCTTCTCCCCAAAA+TGG | - | chr5.3:20087446-20087465 | MS.gene069166:intron | 35.0% | |
| TGAGTTCATAGGCAATTGAT+GGG | - | chr5.3:20088133-20088152 | MS.gene069166:CDS | 35.0% | |
| TGTGACAATTGAAATGTCGT+AGG | - | chr5.3:20088772-20088791 | MS.gene069166:intron | 35.0% | |
| TGTTTAGGCAGTGCTTAATT+AGG | + | chr5.3:20087610-20087629 | None:intergenic | 35.0% | |
| TTAGTTGAAGGTTGTACCTA+TGG | + | chr5.3:20088049-20088068 | None:intergenic | 35.0% | |
| TTCGAGAGAAATGTTAGTGA+AGG | + | chr5.3:20088394-20088413 | None:intergenic | 35.0% | |
| TTGAGTTCATAGGCAATTGA+TGG | - | chr5.3:20088132-20088151 | MS.gene069166:CDS | 35.0% | |
| ! | AAAGGGAGGCAGAAATTTTA+AGG | - | chr5.3:20087997-20088016 | MS.gene069166:CDS | 35.0% |
| ! | AAATCCAGAATCTGAAGTCA+AGG | - | chr5.3:20087258-20087277 | MS.gene069166:CDS | 35.0% |
| ! | CAAGTTGAATCAAATTCTGC+AGG | - | chr5.3:20088307-20088326 | MS.gene069166:intron | 35.0% |
| ! | GTTGTGTGTTTTCTTGTTGA+AGG | + | chr5.3:20088516-20088535 | None:intergenic | 35.0% |
| ! | TAAGTTCCAGTTGATTCTCT+AGG | + | chr5.3:20088198-20088217 | None:intergenic | 35.0% |
| ! | TATTATCTGTATTGGCGTGT+CGG | + | chr5.3:20087711-20087730 | None:intergenic | 35.0% |
| ! | TGTAATCATAGGTGTTGTGT+CGG | - | chr5.3:20087755-20087774 | MS.gene069166:intron | 35.0% |
| !! | CGCATCTTACTTAATTTGCA+CGG | - | chr5.3:20088553-20088572 | MS.gene069166:intron | 35.0% |
| ACAAGACCTAGAGAATCAAC+TGG | - | chr5.3:20088189-20088208 | MS.gene069166:intron | 40.0% | |
| ACAGGGAAACATAATCCATC+AGG | - | chr5.3:20088459-20088478 | MS.gene069166:intron | 40.0% | |
| ACTGTCAAAACTTCCAAGAG+TGG | - | chr5.3:20087522-20087541 | MS.gene069166:intron | 40.0% | |
| ATTCTGGATTTGTCCCTTGT+TGG | + | chr5.3:20087249-20087268 | None:intergenic | 40.0% | |
| ATTTGCAAGGAAGACCAACA+AGG | - | chr5.3:20087232-20087251 | MS.gene069166:CDS | 40.0% | |
| CAAGAATATTGTGAGACCTC+AGG | - | chr5.3:20088923-20088942 | MS.gene069166:CDS | 40.0% | |
| CAATTTCCATACGGTGTTCA+TGG | - | chr5.3:20088848-20088867 | MS.gene069166:intron | 40.0% | |
| CATACCTTGACTTCAGATTC+TGG | + | chr5.3:20087265-20087284 | None:intergenic | 40.0% | |
| GTCTCACAATATTCTTGCTC+AGG | + | chr5.3:20088920-20088939 | None:intergenic | 40.0% | |
| TGCTGCTAAGAGTTACCTTT+CGG | + | chr5.3:20088367-20088386 | None:intergenic | 40.0% | |
| TTGATGGGAGAACAGCTTTA+TGG | - | chr5.3:20088148-20088167 | MS.gene069166:CDS | 40.0% | |
| TTTGCAAGGAAGACCAACAA+GGG | - | chr5.3:20087233-20087252 | MS.gene069166:CDS | 40.0% | |
| ! | CAGAATCTGAAGTCAAGGTA+TGG | - | chr5.3:20087263-20087282 | MS.gene069166:CDS | 40.0% |
| ! | GTGTGTTTTCTTGTTGAAGG+AGG | + | chr5.3:20088513-20088532 | None:intergenic | 40.0% |
| ! | GTTGATTCTCTAGGTCTTGT+AGG | + | chr5.3:20088189-20088208 | None:intergenic | 40.0% |
| ! | TGCGAGTCTCTTGTGATTTT+GGG | + | chr5.3:20088583-20088602 | None:intergenic | 40.0% |
| AATCCAAGAGCTGAACCGAA+AGG | - | chr5.3:20088349-20088368 | MS.gene069166:intron | 45.0% | |
| AATGTCGTAGGTGTATGGCA+CGG | - | chr5.3:20088784-20088803 | MS.gene069166:intron | 45.0% | |
| ATAGCAGTGCTACATCACAG+CGG | + | chr5.3:20088709-20088728 | None:intergenic | 45.0% | |
| CACAATATTCTTGCTCAGGC+TGG | + | chr5.3:20088916-20088935 | None:intergenic | 45.0% | |
| CCAAGGAGTTCGCATGAAAA+AGG | - | chr5.3:20088222-20088241 | MS.gene069166:intron | 45.0% | |
| GAGTACAATCATGCCACTCT+TGG | + | chr5.3:20087538-20087557 | None:intergenic | 45.0% | |
| TTACCTTTCGGTTCAGCTCT+TGG | + | chr5.3:20088355-20088374 | None:intergenic | 45.0% | |
| TTTCCATACGGTGTTCATGG+AGG | - | chr5.3:20088851-20088870 | MS.gene069166:intron | 45.0% | |
| ! | AGAGCTCCACATTTTCCTGA+TGG | + | chr5.3:20088477-20088496 | None:intergenic | 45.0% |
| ! | GCGAGTCTCTTGTGATTTTG+GGG | + | chr5.3:20088582-20088601 | None:intergenic | 45.0% |
| ! | GTGCGAGTCTCTTGTGATTT+TGG | + | chr5.3:20088584-20088603 | None:intergenic | 45.0% |
| ! | TTTTCATGCGAACTCCTTGG+AGG | + | chr5.3:20088222-20088241 | None:intergenic | 45.0% |
| !! | CCTTTTTCATGCGAACTCCT+TGG | + | chr5.3:20088225-20088244 | None:intergenic | 45.0% |
| !!! | CTGATAGTTTTGGCAAAGGG+AGG | - | chr5.3:20087983-20088002 | MS.gene069166:CDS | 45.0% |
| ATGAAGCACGGACACAGACA+CGG | - | chr5.3:20087664-20087683 | MS.gene069166:CDS | 50.0% | |
| CAACTGGAACTTAGCCTCCA+AGG | - | chr5.3:20088205-20088224 | MS.gene069166:intron | 50.0% | |
| CGTGTATCGCGAAACAGTAG+TGG | - | chr5.3:20088671-20088690 | MS.gene069166:intron | 50.0% | |
| TATGAAGCACGGACACCCTT+CGG | + | chr5.3:20087823-20087842 | None:intergenic | 50.0% | |
| TGCGACTCACAACACTGATG+TGG | + | chr5.3:20088606-20088625 | None:intergenic | 50.0% | |
| ! | CATAGGTGTTGTGTCGGTGT+TGG | - | chr5.3:20087761-20087780 | MS.gene069166:intron | 50.0% |
| ! | GTCGGTGTCTATATCGTGTC+TGG | + | chr5.3:20087693-20087712 | None:intergenic | 50.0% |
| CCATACGGTGTTCATGGAGG+AGG | - | chr5.3:20088854-20088873 | MS.gene069166:intron | 55.0% | |
| CCTCCTCCATGAACACCGTA+TGG | + | chr5.3:20088857-20088876 | None:intergenic | 55.0% | |
| CGAGACACGCCTAATCCGAA+GGG | - | chr5.3:20087805-20087824 | MS.gene069166:CDS | 55.0% | |
| TGTTGCACTTGCACTGCCTG+AGG | + | chr5.3:20088942-20088961 | None:intergenic | 55.0% | |
| ! | CCTTCGGATTAGGCGTGTCT+CGG | + | chr5.3:20087807-20087826 | None:intergenic | 55.0% |
| ! | GATTAGGCGTGTCTCGGTGT+CGG | + | chr5.3:20087801-20087820 | None:intergenic | 55.0% |
| CCGAGACACGCCTAATCCGA+AGG | - | chr5.3:20087804-20087823 | MS.gene069166:CDS | 60.0% | |
| GCACGGACACCCTTCGGATT+AGG | + | chr5.3:20087817-20087836 | None:intergenic | 60.0% | |
| !! | TCTCGGTGTCGGATACGCGT+CGG | + | chr5.3:20087790-20087809 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 20087205 | 20088967 | 20087205 | ID=MS.gene069166 |
| chr5.3 | mRNA | 20087205 | 20088967 | 20087205 | ID=MS.gene069166.t1;Parent=MS.gene069166 |
| chr5.3 | exon | 20088893 | 20088967 | 20088893 | ID=MS.gene069166.t1.exon1;Parent=MS.gene069166.t1 |
| chr5.3 | CDS | 20088893 | 20088967 | 20088893 | ID=cds.MS.gene069166.t1;Parent=MS.gene069166.t1 |
| chr5.3 | exon | 20088121 | 20088182 | 20088121 | ID=MS.gene069166.t1.exon2;Parent=MS.gene069166.t1 |
| chr5.3 | CDS | 20088121 | 20088182 | 20088121 | ID=cds.MS.gene069166.t1;Parent=MS.gene069166.t1 |
| chr5.3 | exon | 20087929 | 20088028 | 20087929 | ID=MS.gene069166.t1.exon3;Parent=MS.gene069166.t1 |
| chr5.3 | CDS | 20087929 | 20088028 | 20087929 | ID=cds.MS.gene069166.t1;Parent=MS.gene069166.t1 |
| chr5.3 | exon | 20087802 | 20087843 | 20087802 | ID=MS.gene069166.t1.exon4;Parent=MS.gene069166.t1 |
| chr5.3 | CDS | 20087802 | 20087843 | 20087802 | ID=cds.MS.gene069166.t1;Parent=MS.gene069166.t1 |
| chr5.3 | exon | 20087626 | 20087709 | 20087626 | ID=MS.gene069166.t1.exon5;Parent=MS.gene069166.t1 |
| chr5.3 | CDS | 20087626 | 20087709 | 20087626 | ID=cds.MS.gene069166.t1;Parent=MS.gene069166.t1 |
| chr5.3 | exon | 20087205 | 20087378 | 20087205 | ID=MS.gene069166.t1.exon6;Parent=MS.gene069166.t1 |
| chr5.3 | CDS | 20087205 | 20087378 | 20087205 | ID=cds.MS.gene069166.t1;Parent=MS.gene069166.t1 |
| Gene Sequence |
| Protein sequence |
