AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene069384

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069384.t1 MTR_2g080040 96.532 346 6 3 1 343 1 343 0.0 679
MS.gene069384.t1 MTR_2g090155 78.404 213 46 0 131 343 77 289 1.35e-130 375
MS.gene069384.t1 MTR_2g090155 78.404 213 46 0 131 343 77 289 2.51e-130 376
MS.gene069384.t1 MTR_2g090155 76.526 213 45 1 131 343 77 284 2.52e-123 358
MS.gene069384.t1 MTR_1g075540 28.994 169 114 5 177 342 9 174 3.04e-14 70.9
MS.gene069384.t1 MTR_2g090170 72.000 50 13 1 295 343 20 69 4.07e-14 67.0
MS.gene069384.t1 MTR_6g038540 24.828 145 109 0 180 324 56 200 6.49e-14 70.9
MS.gene069384.t1 MTR_1g075540 29.268 164 110 5 177 337 9 169 1.29e-13 68.6
MS.gene069384.t1 MTR_1g106775 23.926 163 124 0 180 342 85 247 6.11e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069384.t1 AT1G52870 64.553 347 104 6 2 343 4 336 4.58e-159 450
MS.gene069384.t1 AT4G03410 76.682 223 52 0 121 343 72 294 1.36e-134 387
MS.gene069384.t1 AT4G03410 76.682 223 52 0 121 343 72 294 2.02e-134 385
MS.gene069384.t1 AT1G52870 60.312 320 104 7 2 316 4 305 3.30e-131 377
MS.gene069384.t1 AT4G33905 25.316 158 118 0 180 337 86 243 2.95e-13 69.3
MS.gene069384.t1 AT5G43140 23.313 163 125 0 180 342 82 244 4.32e-13 68.9
MS.gene069384.t1 AT2G14860 25.767 163 121 0 180 342 77 239 9.21e-13 67.8
MS.gene069384.t1 AT4G14305 25.444 169 120 5 177 342 9 174 8.00e-11 60.8

Find 74 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGATATGATAGAGCTTATT+TGG 0.132143 2.3:+17777103 MS.gene069384:CDS
TTACTATTGATAGTGATTAT+TGG 0.193346 2.3:+17775399 MS.gene069384:CDS
GCTAGTATTGTTCTTGTTGC+TGG 0.288636 2.3:+17775353 MS.gene069384:CDS
CAGTTGAGCAAAGACTTCTT+TGG 0.344032 2.3:+17777079 MS.gene069384:CDS
CTTGTTGGATTTGCTCTACA+TGG 0.353651 2.3:+17776567 MS.gene069384:CDS
AATTCATTGAAAATATTGAT+TGG 0.360409 2.3:-17776845 None:intergenic
ATAAACTTACGTTGAAAGTA+TGG 0.377879 2.3:-17777130 None:intergenic
ACGACGCAAGTGAATGGATT+TGG 0.380452 2.3:+17775215 MS.gene069384:CDS
AAACTGCATGGTCGGCAGTT+TGG 0.384594 2.3:+17776777 MS.gene069384:CDS
ACACAACTGGTTAGCTTATG+AGG 0.392465 2.3:+17776304 MS.gene069384:CDS
TGATCGAAGGCAACTTTGAC+TGG 0.394081 2.3:-17776755 None:intergenic
CAAAGAAGTCTTTGCTCAAC+TGG 0.399250 2.3:-17777078 None:intergenic
TTGTTTATTCTGTAGGAGAC+TGG 0.418497 2.3:+17776375 MS.gene069384:CDS
AGATATGATAGAGCTTATTT+GGG 0.418869 2.3:+17777104 MS.gene069384:CDS
TATGGTCTACCTCACAAAAC+TGG 0.429644 2.3:-17776611 None:intergenic
TCACTATCAAACCTTCTTGC+TGG 0.438486 2.3:-17775148 None:intergenic
AGTTGAGCAAAGACTTCTTT+GGG 0.441026 2.3:+17777080 MS.gene069384:CDS
CGTGCACGGATGTTCAGATC+AGG 0.450132 2.3:+17776543 MS.gene069384:CDS
TTGCCAAGATGGTGATTAGC+GGG 0.450889 2.3:+17776351 MS.gene069384:CDS
TTTGCTCATCTAATAACTTA+CGG 0.455935 2.3:+17777048 MS.gene069384:CDS
TTAGTGGAGAATCTTGATAC+TGG 0.460029 2.3:-17775035 None:intergenic
AGCATTTACTATACAGTTGT+GGG 0.481625 2.3:+17776803 MS.gene069384:CDS
TGAAGAGAATGTGGAGAGTG+TGG 0.488302 2.3:+17775304 MS.gene069384:CDS
GATATGCACCTCTACACAAC+TGG 0.490397 2.3:+17776291 MS.gene069384:CDS
AATGGATTTGGAGCGAATGA+AGG 0.492577 2.3:+17775227 MS.gene069384:CDS
TCGAGTGCTTCGGGTTTGGT+TGG 0.494003 2.3:+17775272 MS.gene069384:CDS
GTGACGACGACGCAAGTGAA+TGG 0.496360 2.3:+17775209 MS.gene069384:CDS
TAAGTTATTAGATGAGCAAA+TGG 0.497633 2.3:-17777045 None:intergenic
ACTACCCACCATCCTTTGTA+AGG 0.501278 2.3:-17776731 None:intergenic
AGCTATTTCCTTACAAAGGA+TGG 0.507459 2.3:+17776723 MS.gene069384:CDS
TGATTATTGCAGTGCTTCGA+AGG 0.509560 2.3:+17776498 MS.gene069384:intron
ATGTTCAGATCAGGGCTTGT+TGG 0.511574 2.3:+17776552 MS.gene069384:CDS
AACCCCGCTAATCACCATCT+TGG 0.520776 2.3:-17776354 None:intergenic
GAAGGTTTGTTATCGTTGGA+AGG 0.524445 2.3:+17775245 MS.gene069384:CDS
AGCGGGGTTGTTTATTCTGT+AGG 0.524576 2.3:+17776368 MS.gene069384:CDS
CAGCATTTACTATACAGTTG+TGG 0.531133 2.3:+17776802 MS.gene069384:CDS
GCACGATCAAACTCGAAAAG+AGG 0.532545 2.3:-17776525 None:intergenic
GATAGTGAGCCGTGTGGAGA+TGG 0.547654 2.3:+17775163 MS.gene069384:CDS
GGAAGCTCTCAAGACAAATC+CGG 0.548802 2.3:+17776325 MS.gene069384:CDS
CTTCGATCAAACTGCATGGT+CGG 0.558882 2.3:+17776769 MS.gene069384:CDS
GAGGAAAGTGTGGTGAGGTA+CGG 0.563573 2.3:-17774961 None:intergenic
GAATGAAGGTTTGTTATCGT+TGG 0.563825 2.3:+17775241 MS.gene069384:CDS
TACAGGCAGGATGGAAGTTG+TGG 0.575586 2.3:+17777022 MS.gene069384:intron
CAGGAGCTATTTCCTTACAA+AGG 0.576904 2.3:+17776719 MS.gene069384:intron
TATTTCCTTACAAAGGATGG+TGG 0.578819 2.3:+17776726 MS.gene069384:CDS
AGGTTCTCTTACAGTCAACA+TGG 0.583530 2.3:-17776885 None:intergenic
GATATTACAGACCAGCAAGA+AGG 0.585948 2.3:+17775137 MS.gene069384:CDS
TTTGCCAAGATGGTGATTAG+CGG 0.591010 2.3:+17776350 MS.gene069384:CDS
ACTTTCTTATACAGGCAGGA+TGG 0.595260 2.3:+17777013 MS.gene069384:intron
CGACCATGCAGTTTGATCGA+AGG 0.598693 2.3:-17776768 None:intergenic
TAATGAGAATGAAGAGAATG+TGG 0.602012 2.3:+17775295 MS.gene069384:CDS
TGTAGGAGACTGGATTGCAC+AGG 0.610678 2.3:+17776385 MS.gene069384:CDS
TTGGTTTGGAAATTGAAGGG+AGG 0.611704 2.3:-17774980 None:intergenic
ATTTCCTTACAAAGGATGGT+GGG 0.611721 2.3:+17776727 MS.gene069384:CDS
AGGTGGAGATGGTGAATTAG+CGG 0.614566 2.3:+17775187 MS.gene069384:CDS
GTGGAGATGGAAGGTGGAGA+TGG 0.619496 2.3:+17775176 MS.gene069384:CDS
GTGAGGTACGGTGCTGTGAA+CGG 0.621994 2.3:-17774949 None:intergenic
TAAGCTAACCAGTTGTGTAG+AGG 0.623564 2.3:-17776299 None:intergenic
AGCCGTGTGGAGATGGAAGG+TGG 0.639866 2.3:+17775170 MS.gene069384:CDS
GGTTCTCTTACAGTCAACAT+GGG 0.640571 2.3:-17776884 None:intergenic
GTGCACGGATGTTCAGATCA+GGG 0.649536 2.3:+17776544 MS.gene069384:CDS
TTGCCTTCGATCAAACTGCA+TGG 0.649875 2.3:+17776765 MS.gene069384:CDS
CTCCACCTTCCATCTCCACA+CGG 0.651428 2.3:-17775172 None:intergenic
GAATTTCACAAAACGTGCAG+CGG 0.660249 2.3:+17775061 MS.gene069384:CDS
GTGAGCCGTGTGGAGATGGA+AGG 0.660357 2.3:+17775167 MS.gene069384:CDS
GAAGGGAGGAAAGTGTGGTG+AGG 0.665797 2.3:-17774966 None:intergenic
TGCCAAGATGGTGATTAGCG+GGG 0.667655 2.3:+17776352 MS.gene069384:CDS
GCATTTACTATACAGTTGTG+GGG 0.671450 2.3:+17776804 MS.gene069384:CDS
AAATTGAAGGGAGGAAAGTG+TGG 0.672436 2.3:-17774971 None:intergenic
TGATTGGAGAATCAAAACGC+AGG 0.680696 2.3:-17776829 None:intergenic
GGTAGCGACGAAAGTATCAA+CGG 0.696411 2.3:+17775082 MS.gene069384:CDS
GTTCTCTTACAGTCAACATG+GGG 0.723534 2.3:-17776883 None:intergenic
AGGTTTGATAGTGAGCCGTG+TGG 0.739464 2.3:+17775157 MS.gene069384:CDS
AGCGACGAAAGTATCAACGG+AGG 0.758121 2.3:+17775085 MS.gene069384:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAAACATAAAGTAA+AGG - chr2.3:17775632-17775651 None:intergenic 10.0%
!! AATTCATTGAAAATATTGAT+TGG - chr2.3:17776848-17776867 None:intergenic 15.0%
!! GATTTGGAAATGATTAAATT+TGG + chr2.3:17775499-17775518 MS.gene069384:intron 20.0%
!! GTAAACTTCTCATTAAAATT+AGG + chr2.3:17775872-17775891 MS.gene069384:intron 20.0%
!!! AATTTGCAATTTTATAGACT+AGG + chr2.3:17775547-17775566 MS.gene069384:intron 20.0%
!!! CAACTTTAAATTAGCTTATA+AGG - chr2.3:17776102-17776121 None:intergenic 20.0%
!!! CAATATTTTCAATGAATTGA+AGG + chr2.3:17776850-17776869 MS.gene069384:CDS 20.0%
!!! CTTATAAGCTAATTTAAAGT+TGG + chr2.3:17776100-17776119 MS.gene069384:intron 20.0%
!!! TTACTATTGATAGTGATTAT+TGG + chr2.3:17775399-17775418 MS.gene069384:CDS 20.0%
! AGATATGATAGAGCTTATTT+GGG + chr2.3:17777104-17777123 MS.gene069384:CDS 25.0%
! CGTATGGAAAAATATTTGTT+TGG + chr2.3:17775961-17775980 MS.gene069384:intron 25.0%
! TAAGTTATTAGATGAGCAAA+TGG - chr2.3:17777048-17777067 None:intergenic 25.0%
! TAGATATGATAGAGCTTATT+TGG + chr2.3:17777103-17777122 MS.gene069384:CDS 25.0%
! TCAAGATAATCAAATTTGAC+TGG - chr2.3:17776201-17776220 None:intergenic 25.0%
! TTCCTTAAACTTTCTTATAC+AGG + chr2.3:17777005-17777024 MS.gene069384:intron 25.0%
! TTTGCTCATCTAATAACTTA+CGG + chr2.3:17777048-17777067 MS.gene069384:CDS 25.0%
!! AAATATTTTTCCATACGCAT+TGG - chr2.3:17775958-17775977 None:intergenic 25.0%
!! ATTACCATTTATTTGTTGCA+TGG + chr2.3:17776915-17776934 MS.gene069384:intron 25.0%
!! CACGTTTAAATTAGCTTATT+TGG - chr2.3:17776145-17776164 None:intergenic 25.0%
!!! AATGGATTTTGATTTTGGTT+TGG - chr2.3:17774997-17775016 None:intergenic 25.0%
!!! ATTTTGGTTTGGAAATTGAA+GGG - chr2.3:17774986-17775005 None:intergenic 25.0%
!!! TTGGAAATGGATTTTGATTT+TGG - chr2.3:17775002-17775021 None:intergenic 25.0%
AAAAACTAAGCCAATCCAAA+CGG + chr2.3:17775803-17775822 MS.gene069384:intron 30.0%
AAAATAAGTCAATCCAAACC+CGG - chr2.3:17775573-17775592 None:intergenic 30.0%
AATAAATGGTAATAGCCAGA+AGG - chr2.3:17776908-17776927 None:intergenic 30.0%
AGCATTTACTATACAGTTGT+GGG + chr2.3:17776803-17776822 MS.gene069384:CDS 30.0%
ATGGAGATATGCTAATTAAG+TGG + chr2.3:17776683-17776702 MS.gene069384:intron 30.0%
ATTCAAGAACAATGCAAGAA+AGG - chr2.3:17776653-17776672 None:intergenic 30.0%
CAAATTTGACTGGATATACA+GGG - chr2.3:17776191-17776210 None:intergenic 30.0%
GATTAAATTTGGTTGTACTG+TGG + chr2.3:17775510-17775529 MS.gene069384:intron 30.0%
GGAAAAGAACATTGTTCATA+TGG - chr2.3:17776632-17776651 None:intergenic 30.0%
GTTTCCATGCAACAAATAAA+TGG - chr2.3:17776922-17776941 None:intergenic 30.0%
TAATGAGAATGAAGAGAATG+TGG + chr2.3:17775295-17775314 MS.gene069384:CDS 30.0%
TATTATTCATAAGCTTGTCG+AGG - chr2.3:17775741-17775760 None:intergenic 30.0%
TCAAATTTGACTGGATATAC+AGG - chr2.3:17776192-17776211 None:intergenic 30.0%
TGCCTGTATAAGAAAGTTTA+AGG - chr2.3:17777010-17777029 None:intergenic 30.0%
TTAAACTTTCTTATACAGGC+AGG + chr2.3:17777009-17777028 MS.gene069384:intron 30.0%
TTCTTGAATTGTCTGACTTA+TGG + chr2.3:17776664-17776683 MS.gene069384:intron 30.0%
! TGAATTTTTCCTTATCTGCT+AGG + chr2.3:17776218-17776237 MS.gene069384:intron 30.0%
!! TTACTATTACCAGTTTTGTG+AGG + chr2.3:17776602-17776621 MS.gene069384:CDS 30.0%
!! TTTTGTGAAATTCGGATTAG+TGG - chr2.3:17775054-17775073 None:intergenic 30.0%
!!! CGAAGAACTATACTTTTTCT+TGG - chr2.3:17776064-17776083 None:intergenic 30.0%
!!! GATTTTGGTTTGGAAATTGA+AGG - chr2.3:17774987-17775006 None:intergenic 30.0%
AACACAAATCCTAGCAGATA+AGG - chr2.3:17776230-17776249 None:intergenic 35.0%
AATCACTATACCGTTTGGAT+TGG - chr2.3:17775816-17775835 None:intergenic 35.0%
AGTCTATACATTTGCATGCA+GGG + chr2.3:17776029-17776048 MS.gene069384:intron 35.0%
AGTTGAGCAAAGACTTCTTT+GGG + chr2.3:17777080-17777099 MS.gene069384:CDS 35.0%
ATTTCCTTACAAAGGATGGT+GGG + chr2.3:17776727-17776746 MS.gene069384:CDS 35.0%
CAGCATTTACTATACAGTTG+TGG + chr2.3:17776802-17776821 MS.gene069384:CDS 35.0%
GCATTTACTATACAGTTGTG+GGG + chr2.3:17776804-17776823 MS.gene069384:CDS 35.0%
GGCTAATCTAAATTAGCAAC+TGG - chr2.3:17776170-17776189 None:intergenic 35.0%
TAGTCTATACATTTGCATGC+AGG + chr2.3:17776028-17776047 MS.gene069384:intron 35.0%
TATTTCCTTACAAAGGATGG+TGG + chr2.3:17776726-17776745 MS.gene069384:CDS 35.0%
TCCAAACGGTATAGTGATTA+TGG + chr2.3:17775817-17775836 MS.gene069384:intron 35.0%
TGTGTGTGATTCTTTGGATT+TGG + chr2.3:17775483-17775502 MS.gene069384:intron 35.0%
TTAGGTCATAGTTACCAACT+TGG + chr2.3:17775890-17775909 MS.gene069384:intron 35.0%
TTAGTGGAGAATCTTGATAC+TGG - chr2.3:17775038-17775057 None:intergenic 35.0%
TTGTTTATTCTGTAGGAGAC+TGG + chr2.3:17776375-17776394 MS.gene069384:CDS 35.0%
TTTCATATACAGCTGAGTCT+CGG + chr2.3:17776427-17776446 MS.gene069384:intron 35.0%
TTTGTGTGTGTGTGATTCTT+TGG + chr2.3:17775477-17775496 MS.gene069384:intron 35.0%
! AGCTATTTCCTTACAAAGGA+TGG + chr2.3:17776723-17776742 MS.gene069384:CDS 35.0%
! CAATCTTTTATCATGCACTG+TGG + chr2.3:17776463-17776482 MS.gene069384:intron 35.0%
! CTTGATACTGGAAAGTTTTG+TGG - chr2.3:17775026-17775045 None:intergenic 35.0%
! TGCAATTTTATAGACTAGGC+CGG + chr2.3:17775551-17775570 MS.gene069384:intron 35.0%
!! AAAGTTTTGTGGCTTGGAAA+TGG - chr2.3:17775015-17775034 None:intergenic 35.0%
!! GAATGAAGGTTTGTTATCGT+TGG + chr2.3:17775241-17775260 MS.gene069384:CDS 35.0%
!!! GTTTTTAGCGTATGCAAAAC+TGG - chr2.3:17775789-17775808 None:intergenic 35.0%
AAATTGAAGGGAGGAAAGTG+TGG - chr2.3:17774974-17774993 None:intergenic 40.0%
AAGCTTGTCGAGGTAGTTTA+TGG - chr2.3:17775731-17775750 None:intergenic 40.0%
ACTTTCTTATACAGGCAGGA+TGG + chr2.3:17777013-17777032 MS.gene069384:intron 40.0%
AGGTTCTCTTACAGTCAACA+TGG - chr2.3:17776888-17776907 None:intergenic 40.0%
ATAGCTCCTGGATAAATGAG+AGG - chr2.3:17776709-17776728 None:intergenic 40.0%
ATCACCATCTTGGCAAAAAC+CGG - chr2.3:17776347-17776366 None:intergenic 40.0%
CAAAGAAGTCTTTGCTCAAC+TGG - chr2.3:17777081-17777100 None:intergenic 40.0%
CAAGATAATGTTACCACCAC+TGG - chr2.3:17776965-17776984 None:intergenic 40.0%
CAGTTGAGCAAAGACTTCTT+TGG + chr2.3:17777079-17777098 MS.gene069384:CDS 40.0%
CTGCTAGGATTTGTGTTTCT+TGG + chr2.3:17776233-17776252 MS.gene069384:intron 40.0%
CTTTGTAAGGAAATAGCTCC+TGG - chr2.3:17776721-17776740 None:intergenic 40.0%
GAATTTCACAAAACGTGCAG+CGG + chr2.3:17775061-17775080 MS.gene069384:CDS 40.0%
GATATTACAGACCAGCAAGA+AGG + chr2.3:17775137-17775156 MS.gene069384:CDS 40.0%
GCCATAATCACTATACCGTT+TGG - chr2.3:17775821-17775840 None:intergenic 40.0%
GCTAGAAATCGACACAAACT+TGG - chr2.3:17775843-17775862 None:intergenic 40.0%
GCTAGTATTGTTCTTGTTGC+TGG + chr2.3:17775353-17775372 MS.gene069384:CDS 40.0%
GGTTCTCTTACAGTCAACAT+GGG - chr2.3:17776887-17776906 None:intergenic 40.0%
GTTCTCTTACAGTCAACATG+GGG - chr2.3:17776886-17776905 None:intergenic 40.0%
TAAGCTAACCAGTTGTGTAG+AGG - chr2.3:17776302-17776321 None:intergenic 40.0%
TATACATTTGCATGCAGGGA+GGG + chr2.3:17776033-17776052 MS.gene069384:intron 40.0%
TATGGTCTACCTCACAAAAC+TGG - chr2.3:17776614-17776633 None:intergenic 40.0%
TCACTATCAAACCTTCTTGC+TGG - chr2.3:17775151-17775170 None:intergenic 40.0%
TGATTATTGCAGTGCTTCGA+AGG + chr2.3:17776498-17776517 MS.gene069384:intron 40.0%
TGATTGGAGAATCAAAACGC+AGG - chr2.3:17776832-17776851 None:intergenic 40.0%
TTGACTGTAAGAGAACCTTC+TGG + chr2.3:17776890-17776909 MS.gene069384:intron 40.0%
TTTGCCAAGATGGTGATTAG+CGG + chr2.3:17776350-17776369 MS.gene069384:CDS 40.0%
! AAATCCGGTTTTTGCCAAGA+TGG + chr2.3:17776340-17776359 MS.gene069384:CDS 40.0%
! AATGGATTTGGAGCGAATGA+AGG + chr2.3:17775227-17775246 MS.gene069384:CDS 40.0%
! CAGGAGCTATTTCCTTACAA+AGG + chr2.3:17776719-17776738 MS.gene069384:intron 40.0%
! CTTGTTGGATTTGCTCTACA+TGG + chr2.3:17776567-17776586 MS.gene069384:CDS 40.0%
! GCAATTTTATAGACTAGGCC+GGG + chr2.3:17775552-17775571 MS.gene069384:intron 40.0%
! GCTGCACGTTTTGTGAAATT+CGG - chr2.3:17775062-17775081 None:intergenic 40.0%
!! ACACAACTGGTTAGCTTATG+AGG + chr2.3:17776304-17776323 MS.gene069384:CDS 40.0%
!! ATTCTTTTTCTGAGAGCCAG+TGG + chr2.3:17776946-17776965 MS.gene069384:intron 40.0%
!! GAAGGTTTGTTATCGTTGGA+AGG + chr2.3:17775245-17775264 MS.gene069384:CDS 40.0%
!! GTGTTTCTTGGTGCTATGTA+GGG + chr2.3:17776245-17776264 MS.gene069384:intron 40.0%
!! GTTTGTGTCGATTTCTAGCT+TGG + chr2.3:17775844-17775863 MS.gene069384:intron 40.0%
!! TACTGGAAAGTTTTGTGGCT+TGG - chr2.3:17775021-17775040 None:intergenic 40.0%
!! TGTGTTTCTTGGTGCTATGT+AGG + chr2.3:17776244-17776263 MS.gene069384:intron 40.0%
!! TTCGAAGCACTGCAATAATC+AGG - chr2.3:17776499-17776518 None:intergenic 40.0%
!! TTGGTTTGGAAATTGAAGGG+AGG - chr2.3:17774983-17775002 None:intergenic 40.0%
!!! TTTTCGAGTTTGATCGTGCA+CGG + chr2.3:17776529-17776548 MS.gene069384:CDS 40.0%
AAGTGGCCTCTCATTTATCC+AGG + chr2.3:17776700-17776719 MS.gene069384:intron 45.0%
ACTACCCACCATCCTTTGTA+AGG - chr2.3:17776734-17776753 None:intergenic 45.0%
AGCGGGGTTGTTTATTCTGT+AGG + chr2.3:17776368-17776387 MS.gene069384:CDS 45.0%
AGGTGGAGATGGTGAATTAG+CGG + chr2.3:17775187-17775206 MS.gene069384:CDS 45.0%
ATGTTCAGATCAGGGCTTGT+TGG + chr2.3:17776552-17776571 MS.gene069384:CDS 45.0%
CTATACATTTGCATGCAGGG+AGG + chr2.3:17776032-17776051 MS.gene069384:intron 45.0%
CTTCGATCAAACTGCATGGT+CGG + chr2.3:17776769-17776788 MS.gene069384:CDS 45.0%
GATATGCACCTCTACACAAC+TGG + chr2.3:17776291-17776310 MS.gene069384:CDS 45.0%
GCACGATCAAACTCGAAAAG+AGG - chr2.3:17776528-17776547 None:intergenic 45.0%
GGAAGCTCTCAAGACAAATC+CGG + chr2.3:17776325-17776344 MS.gene069384:CDS 45.0%
TGAAGAGAATGTGGAGAGTG+TGG + chr2.3:17775304-17775323 MS.gene069384:CDS 45.0%
TGATCGAAGGCAACTTTGAC+TGG - chr2.3:17776758-17776777 None:intergenic 45.0%
TTGCCAAGATGGTGATTAGC+GGG + chr2.3:17776351-17776370 MS.gene069384:CDS 45.0%
TTGCCTTCGATCAAACTGCA+TGG + chr2.3:17776765-17776784 MS.gene069384:CDS 45.0%
TTTATAGACTAGGCCGGGTT+TGG + chr2.3:17775557-17775576 MS.gene069384:intron 45.0%
! ACGACGCAAGTGAATGGATT+TGG + chr2.3:17775215-17775234 MS.gene069384:CDS 45.0%
! TTTCCATACGCATTGGCCAA+GGG - chr2.3:17775951-17775970 None:intergenic 45.0%
!! ACTTGAGTTGATCGATCCCT+TGG + chr2.3:17775932-17775951 MS.gene069384:intron 45.0%
!! GGTAGCGACGAAAGTATCAA+CGG + chr2.3:17775082-17775101 MS.gene069384:CDS 45.0%
!! TTCTTGGTGCTATGTAGGGA+TGG + chr2.3:17776249-17776268 MS.gene069384:intron 45.0%
!! TTTTCCATACGCATTGGCCA+AGG - chr2.3:17775952-17775971 None:intergenic 45.0%
!!! GAAGGTTTTTCGAGTGCTTC+GGG + chr2.3:17775263-17775282 MS.gene069384:CDS 45.0%
!!! GGAAGGTTTTTCGAGTGCTT+CGG + chr2.3:17775262-17775281 MS.gene069384:CDS 45.0%
!!! TTTTTCGAGTGCTTCGGGTT+TGG + chr2.3:17775268-17775287 MS.gene069384:CDS 45.0%
AAACTGCATGGTCGGCAGTT+TGG + chr2.3:17776777-17776796 MS.gene069384:CDS 50.0%
AACCCCGCTAATCACCATCT+TGG - chr2.3:17776357-17776376 None:intergenic 50.0%
CGACCATGCAGTTTGATCGA+AGG - chr2.3:17776771-17776790 None:intergenic 50.0%
GTGCACGGATGTTCAGATCA+GGG + chr2.3:17776544-17776563 MS.gene069384:CDS 50.0%
TACAGGCAGGATGGAAGTTG+TGG + chr2.3:17777022-17777041 MS.gene069384:intron 50.0%
TGCCAAGATGGTGATTAGCG+GGG + chr2.3:17776352-17776371 MS.gene069384:CDS 50.0%
TGTAGGAGACTGGATTGCAC+AGG + chr2.3:17776385-17776404 MS.gene069384:CDS 50.0%
! GAGGAAAGTGTGGTGAGGTA+CGG - chr2.3:17774964-17774983 None:intergenic 50.0%
!! AGCGACGAAAGTATCAACGG+AGG + chr2.3:17775085-17775104 MS.gene069384:CDS 50.0%
!! AGGTTTGATAGTGAGCCGTG+TGG + chr2.3:17775157-17775176 MS.gene069384:CDS 50.0%
!! CTTTTTCTGAGAGCCAGTGG+TGG + chr2.3:17776949-17776968 MS.gene069384:intron 50.0%
CGTGCACGGATGTTCAGATC+AGG + chr2.3:17776543-17776562 MS.gene069384:CDS 55.0%
CTCCACCTTCCATCTCCACA+CGG - chr2.3:17775175-17775194 None:intergenic 55.0%
GATAGTGAGCCGTGTGGAGA+TGG + chr2.3:17775163-17775182 MS.gene069384:CDS 55.0%
GATCCCTTGGCCAATGCGTA+TGG + chr2.3:17775945-17775964 MS.gene069384:intron 55.0%
GTGACGACGACGCAAGTGAA+TGG + chr2.3:17775209-17775228 MS.gene069384:CDS 55.0%
GTGGAGATGGAAGGTGGAGA+TGG + chr2.3:17775176-17775195 MS.gene069384:CDS 55.0%
! GAAGGGAGGAAAGTGTGGTG+AGG - chr2.3:17774969-17774988 None:intergenic 55.0%
! TCGAGTGCTTCGGGTTTGGT+TGG + chr2.3:17775272-17775291 MS.gene069384:CDS 55.0%
!! GTGAGGTACGGTGCTGTGAA+CGG - chr2.3:17774952-17774971 None:intergenic 55.0%
AGCCGTGTGGAGATGGAAGG+TGG + chr2.3:17775170-17775189 MS.gene069384:CDS 60.0%
CCACTCGCGTCACACCAAGT+TGG - chr2.3:17775907-17775926 None:intergenic 60.0%
GTGAGCCGTGTGGAGATGGA+AGG + chr2.3:17775167-17775186 MS.gene069384:CDS 60.0%
!! CCAACTTGGTGTGACGCGAG+TGG + chr2.3:17775904-17775923 MS.gene069384:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 17774942 17777146 17774942 ID=MS.gene069384
chr2.3 mRNA 17774942 17777146 17774942 ID=MS.gene069384.t1;Parent=MS.gene069384
chr2.3 exon 17774942 17775424 17774942 ID=MS.gene069384.t1.exon1;Parent=MS.gene069384.t1
chr2.3 CDS 17774942 17775424 17774942 ID=cds.MS.gene069384.t1;Parent=MS.gene069384.t1
chr2.3 exon 17776266 17776406 17776266 ID=MS.gene069384.t1.exon2;Parent=MS.gene069384.t1
chr2.3 CDS 17776266 17776406 17776266 ID=cds.MS.gene069384.t1;Parent=MS.gene069384.t1
chr2.3 exon 17776510 17776623 17776510 ID=MS.gene069384.t1.exon3;Parent=MS.gene069384.t1
chr2.3 CDS 17776510 17776623 17776510 ID=cds.MS.gene069384.t1;Parent=MS.gene069384.t1
chr2.3 exon 17776722 17776895 17776722 ID=MS.gene069384.t1.exon4;Parent=MS.gene069384.t1
chr2.3 CDS 17776722 17776895 17776722 ID=cds.MS.gene069384.t1;Parent=MS.gene069384.t1
chr2.3 exon 17777027 17777146 17777027 ID=MS.gene069384.t1.exon5;Parent=MS.gene069384.t1
chr2.3 CDS 17777027 17777146 17777027 ID=cds.MS.gene069384.t1;Parent=MS.gene069384.t1
Gene Sequence

>MS.gene069384

ATGGCTTCCGTTCACAGCACCGTACCTCACCACACTTTCCTCCCTTCAATTTCCAAACCAAAATCAAAATCCATTTCCAAGCCACAAAACTTTCCAGTATCAAGATTCTCCACTAATCCGAATTTCACAAAACGTGCAGCGGTAGCGACGAAAGTATCAACGGAGGAGTTCGACGTAATAGCAGTACAGAGCAACGATATTACAGACCAGCAAGAAGGTTTGATAGTGAGCCGTGTGGAGATGGAAGGTGGAGATGGTGAATTAGCGGTGACGACGACGCAAGTGAATGGATTTGGAGCGAATGAAGGTTTGTTATCGTTGGAAGGTTTTTCGAGTGCTTCGGGTTTGGTTGGTAATGAGAATGAAGAGAATGTGGAGAGTGTGGAGAAGCTTCTAGATAGAAGTATTAATGCTAGTATTGTTCTTGTTGCTGGTACTTTTGCTCTTACGAAGCTTCTTACTATTGATAGTGATTATTGGCATGTAAGTTTACAACAACAACTCAATCATGCTTATCTGAAATTATGTATGTGTGTTTGTGTGTGTGTGATTCTTTGGATTTGGAAATGATTAAATTTGGTTGTACTGTGGAAATTTTGATACAAAATTTGCAATTTTATAGACTAGGCCGGGTTTGGATTGACTTATTTTTCAGCTTATGAAACATAGTTTATGCAAATAAATAATCCTTTACTTTATGTTTTTATTTTATTTTATGACAGCATAATTTTTTATGTTAATTCTTAAGTTCATGCTAATGAAAATTGTATTTTATAAGCTGTTTTTCCATAAACTACCTCGACAAGCTTATGAATAATACATAAAAGCTTATTTATTTGCATAACCAGTTTTGCATACGCTAAAAACTAAGCCAATCCAAACGGTATAGTGATTATGGCCAAGTTTGTGTCGATTTCTAGCTTGGATCAAGTAAACTTCTCATTAAAATTAGGTCATAGTTACCAACTTGGTGTGACGCGAGTGGTAGATACTTGAGTTGATCGATCCCTTGGCCAATGCGTATGGAAAAATATTTGTTTGGAGAGAGACTGATCTCTTTAATGAATCTTAGTTGTCTAGAAGAATTAGTCTATACATTTGCATGCAGGGAGGGTTTTACCAAGAAAAAGTATAGTTCTTCGTCTTGTAGAAAGAGTCCTTATAAGCTAATTTAAAGTTGGTCTAAGTTATGTGTTTATTCCAAATAAGCTAATTTAAACGTGCTCCAGTTGCTAATTTAGATTAGCCCTGTATATCCAGTCAAATTTGATTATCTTGAATTTTTCCTTATCTGCTAGGATTTGTGTTTCTTGGTGCTATGTAGGGATGGACAATCTATGAGATAGTAAGATATGCACCTCTACACAACTGGTTAGCTTATGAGGAAGCTCTCAAGACAAATCCGGTTTTTGCCAAGATGGTGATTAGCGGGGTTGTTTATTCTGTAGGAGACTGGATTGCACAGGTGAGTTTTTGTGTATTTCATTTCATATACAGCTGAGTCTCGGTTAGTTGAATAGACAATCTTTTATCATGCACTGTGGCTTAAGCTCTCCTGATTATTGCAGTGCTTCGAAGGAAAGCCTCTTTTCGAGTTTGATCGTGCACGGATGTTCAGATCAGGGCTTGTTGGATTTGCTCTACATGGCTCTCTTTCTCATTACTATTACCAGTTTTGTGAGGTAGACCATATGAACAATGTTCTTTTCCTTTCTTGCATTGTTCTTGAATTGTCTGACTTATGGAGATATGCTAATTAAGTGGCCTCTCATTTATCCAGGAGCTATTTCCTTACAAAGGATGGTGGGTAGTTCCAGTCAAAGTTGCCTTCGATCAAACTGCATGGTCGGCAGTTTGGAACAGCATTTACTATACAGTTGTGGGGATCCTGCGTTTTGATTCTCCAATCAATATTTTCAATGAATTGAAGGCAACATTTTTCCCCATGTTGACTGTAAGAGAACCTTCTGGCTATTACCATTTATTTGTTGCATGGAAACAGTTATTCTTTTTCTGAGAGCCAGTGGTGGTAACATTATCTTGCAACTTCTTGTTATTTATGTTTCCTTAAACTTTCTTATACAGGCAGGATGGAAGTTGTGGCCATTTGCTCATCTAATAACTTACGGTGTAATACCAGTTGAGCAAAGACTTCTTTGGGTAGATATGATAGAGCTTATTTGGGTGACCATACTTTCAACGTAA
Protein sequence

>MS.gene069384.t1

MASVHSTVPHHTFLPSISKPKSKSISKPQNFPVSRFSTNPNFTKRAAVATKVSTEEFDVIAVQSNDITDQQEGLIVSRVEMEGGDGELAVTTTQVNGFGANEGLLSLEGFSSASGLVGNENEENVESVEKLLDRSINASIVLVAGTFALTKLLTIDSDYWHGWTIYEIVRYAPLHNWLAYEEALKTNPVFAKMVISGVVYSVGDWIAQCFEGKPLFEFDRARMFRSGLVGFALHGSLSHYYYQFCEELFPYKGWWVVPVKVAFDQTAWSAVWNSIYYTVVGILRFDSPINIFNELKATFFPMLTAGWKLWPFAHLITYGVIPVEQRLLWVDMIELIWVTILST