AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060835


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060835.t1 MTR_4g010000 94.271 384 21 1 1 384 1 383 0.0 722
MS.gene060835.t1 MTR_4g010000 93.651 252 15 1 1 252 1 251 3.09e-162 456
MS.gene060835.t1 MTR_8g010120 34.831 267 163 8 114 376 113 372 7.05e-40 145
MS.gene060835.t1 MTR_8g010120 34.831 267 163 8 114 376 73 332 7.24e-40 145
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060835.t1 AT1G52510 74.394 371 93 2 14 384 12 380 0.0 577
MS.gene060835.t1 AT1G52510 80.932 236 45 0 149 384 1 236 1.33e-146 415
MS.gene060835.t1 AT4G12830 32.979 376 223 13 22 376 12 379 3.96e-41 149

Find 91 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTACCGGTTACCTTATT+TGG 0.135833 4.3:+83473260 MS.gene060835:CDS
TTAAAACAGTTGGCAGATTC+AGG 0.191898 4.3:+83471691 MS.gene060835:intron
AAATCATCATTCAACCCTTT+TGG 0.239268 4.3:+83469833 MS.gene060835:CDS
ACCTGAACAACTAGGTAAAA+TGG 0.268952 4.3:-83471933 None:intergenic
ATCATCTTGATCATTGCTTT+TGG 0.273108 4.3:-83469807 None:intergenic
TCTTCTTCTGTTACAGTTGT+TGG 0.307791 4.3:-83469711 None:intergenic
GGTCCACTGCTTGCCAAATA+AGG 0.311829 4.3:-83473273 None:intergenic
CTTTCTAGATTCCCTCTATA+TGG 0.319543 4.3:+83472910 MS.gene060835:intron
GATAAACTGCTCGAGGTGTT+AGG 0.322623 4.3:+83471900 MS.gene060835:CDS
GCAAGCAGTGGACCTGGATT+TGG 0.327621 4.3:+83473282 MS.gene060835:CDS
GGATTTCTTGTAGGTTCATA+TGG 0.332214 4.3:+83472238 MS.gene060835:CDS
ATGGGAGATGAGCTTGTTAA+TGG 0.335320 4.3:-83472319 None:intergenic
AGATGGTTTGTGAGGGAAAC+TGG 0.336712 4.3:+83471372 MS.gene060835:CDS
CTCCTTAAGGGATTTCTTGT+AGG 0.338401 4.3:+83472229 MS.gene060835:intron
GCGCCTGACTGGATAGGATT+TGG 0.341818 4.3:+83471727 MS.gene060835:CDS
TAAGCCGATAATGCTTGTTT+GGG 0.352537 4.3:+83475145 MS.gene060835:CDS
ATGAAAAGGCTGATGTTTAC+CGG 0.356328 4.3:+83473247 MS.gene060835:CDS
ATAAGCCGATAATGCTTGTT+TGG 0.358685 4.3:+83475144 MS.gene060835:CDS
TATCTTGCTTGAGTTCTTCA+AGG 0.370429 4.3:-83472272 None:intergenic
CAGAAGGATTTGCAACTAAC+AGG 0.371267 4.3:+83474346 MS.gene060835:CDS
CACAAACCATCTCAACTTCC+CGG 0.388212 4.3:-83471361 None:intergenic
ACAAGCTCATCTCCCATTCC+TGG 0.390715 4.3:+83472325 MS.gene060835:CDS
GACAAGCCACAGCCAGGATA+TGG 0.394920 4.3:+83471757 MS.gene060835:CDS
TGAATGGCACTACGGCTTGA+TGG 0.396499 4.3:-83469872 None:intergenic
TTCACTGCTTTGCGCCTGAC+TGG 0.406887 4.3:+83471716 MS.gene060835:CDS
TACGGATCATATGTAAAATC+CGG 0.408411 4.3:+83471342 MS.gene060835:CDS
ATCAAGCTTAAATTGATAGA+AGG 0.411333 4.3:+83475233 MS.gene060835:CDS
GCTCAGCAATAATAGCATTC+TGG 0.422752 4.3:-83472945 None:intergenic
CCTGCTGAAGCTGGCAATGT+TGG 0.436380 4.3:+83469908 MS.gene060835:CDS
ATAAACTGCTCGAGGTGTTA+GGG 0.442478 4.3:+83471901 MS.gene060835:CDS
GAAATAGCAAGGTTTAGTGT+TGG 0.443464 4.3:-83469677 None:intergenic
CAAGACAAGGGCAAGGAATA+CGG 0.457995 4.3:+83471324 MS.gene060835:CDS
CTGGACTATTTCAGCAGCTA+AGG 0.459053 4.3:+83472344 MS.gene060835:CDS
AAAGCATCAACAACTTTCTC+AGG 0.462814 4.3:-83475386 None:intergenic
TGCTTGCCAAATAAGGTAAC+CGG 0.469045 4.3:-83473266 None:intergenic
GTCATATGCCACAAGAAGAT+TGG 0.472192 4.3:+83475261 MS.gene060835:CDS
GCTTGAGTTCTTCAAGGCCC+AGG 0.472432 4.3:-83472266 None:intergenic
TAAAACAGTTGGCAGATTCA+GGG 0.477518 4.3:+83471692 MS.gene060835:intron
TTATCAGTAACAAATCCAAA+AGG 0.481278 4.3:-83469848 None:intergenic
CCAACATTGCCAGCTTCAGC+AGG 0.482936 4.3:-83469908 None:intergenic
CATTGAAATTCACCATATAG+AGG 0.484860 4.3:-83472922 None:intergenic
TCTGAAAATCCTGCTGAAGC+TGG 0.491648 4.3:+83469899 MS.gene060835:CDS
TGCTGAAATAGTCCAGGAAT+GGG 0.492694 4.3:-83472337 None:intergenic
TATTTGGCAAGCAGTGGACC+TGG 0.494712 4.3:+83473276 MS.gene060835:CDS
CTGCTGAAATAGTCCAGGAA+TGG 0.505004 4.3:-83472338 None:intergenic
TGCTTTGCGCCTGACTGGAT+AGG 0.508011 4.3:+83471721 MS.gene060835:CDS
GGAACAATTGTATTCCTTCA+CGG 0.510150 4.3:+83471510 MS.gene060835:CDS
TTCAGTGACAAGCCACAGCC+AGG 0.513906 4.3:+83471751 MS.gene060835:CDS
TAGGTTCATATGGACTGACC+TGG 0.515329 4.3:+83472248 MS.gene060835:CDS
ACTGAAAGTACCGTTGAAGT+TGG 0.517505 4.3:-83474316 None:intergenic
AAAGGAGTTCCACGATGCAT+TGG 0.518692 4.3:+83471878 MS.gene060835:CDS
GCTGAGCGGTTTATTGAAAG+AGG 0.524103 4.3:+83472961 MS.gene060835:CDS
CTTTAGATACCTGAACAACT+AGG 0.528906 4.3:-83471941 None:intergenic
CTACCGAGTTGTTATGTCTG+AGG 0.530251 4.3:+83471554 MS.gene060835:CDS
AAACCAAATCCTATCCAGTC+AGG 0.531111 4.3:-83471730 None:intergenic
CTTAGCTGCTGAAATAGTCC+AGG 0.545953 4.3:-83472343 None:intergenic
TACTCTCACCAATCTTCTTG+TGG 0.549372 4.3:-83475269 None:intergenic
TTACCTTATTTGGCAAGCAG+TGG 0.551775 4.3:+83473270 MS.gene060835:CDS
TAGTAGTTGAAGAAATAGCA+AGG 0.551880 4.3:-83469688 None:intergenic
TATCAGTAACAAATCCAAAA+GGG 0.554155 4.3:-83469847 None:intergenic
CAGACAATTGAATGGCACTA+CGG 0.555154 4.3:-83469880 None:intergenic
ATTGTGTTGGCGCTCCGTGA+AGG 0.556030 4.3:-83471524 None:intergenic
ACGGATCATATGTAAAATCC+GGG 0.557018 4.3:+83471343 MS.gene060835:CDS
TAAAATCCGGGAAGTTGAGA+TGG 0.557129 4.3:+83471355 MS.gene060835:CDS
CTTAAATTGATAGAAGGAGC+TGG 0.557191 4.3:+83475239 MS.gene060835:CDS
TTATGTCACTAACCAAATCC+AGG 0.573861 4.3:-83473294 None:intergenic
TTGAAACCATATCCTGGCTG+TGG 0.575075 4.3:-83471763 None:intergenic
GTGTAATTGAAACCATATCC+TGG 0.576415 4.3:-83471769 None:intergenic
CGGTAGCTAAAAGATTGTGT+TGG 0.581014 4.3:-83471537 None:intergenic
AAGCCGATAATGCTTGTTTG+GGG 0.583312 4.3:+83475146 MS.gene060835:CDS
GCAAGAAAAGCCAACTTCAA+CGG 0.586187 4.3:+83474306 MS.gene060835:CDS
TTCCTAGAAAATACAAGACA+AGG 0.589706 4.3:+83471311 MS.gene060835:intron
ACTTTCAGTGAAATAGCAGA+AGG 0.592480 4.3:+83474330 MS.gene060835:CDS
ATTGAAATTCACCATATAGA+GGG 0.594463 4.3:-83472921 None:intergenic
TCAAGCACAAGTTCATGCAG+AGG 0.601190 4.3:+83469737 MS.gene060835:CDS
GGAAGTTGAGATGGTTTGTG+AGG 0.602667 4.3:+83471364 MS.gene060835:CDS
GAAGTTGAGATGGTTTGTGA+GGG 0.604921 4.3:+83471365 MS.gene060835:CDS
GGATATGGTTTCAATTACAC+AGG 0.610720 4.3:+83471772 MS.gene060835:CDS
AGGTTCATATGGACTGACCT+GGG 0.616385 4.3:+83472249 MS.gene060835:CDS
ATAGCAGAGGAGTTTCAGAA+AGG 0.625958 4.3:+83475197 MS.gene060835:CDS
GAAAATACAAGACAAGGGCA+AGG 0.626660 4.3:+83471317 MS.gene060835:intron
TGCATTGGATAAACTGCTCG+AGG 0.628580 4.3:+83471893 MS.gene060835:CDS
CTTGCCACAGTCTATAGCAG+AGG 0.636542 4.3:+83475184 MS.gene060835:CDS
AGCCGATAATGCTTGTTTGG+GGG 0.640716 4.3:+83475147 MS.gene060835:CDS
TAAACTGCTCGAGGTGTTAG+GGG 0.643199 4.3:+83471902 MS.gene060835:CDS
GGGTCAGCAAAGAGTAGACG+AGG 0.650329 4.3:+83471489 MS.gene060835:intron
TCCTAGAAAATACAAGACAA+GGG 0.660631 4.3:+83471312 MS.gene060835:intron
AACTCCTCTGCTATAGACTG+TGG 0.705660 4.3:-83475188 None:intergenic
GCAGTTTATCCAATGCATCG+TGG 0.708837 4.3:-83471887 None:intergenic
AGAATGCTATTATTGCTGAG+CGG 0.715274 4.3:+83472947 MS.gene060835:CDS
TAACCTCAGACATAACAACT+CGG 0.719245 4.3:-83471557 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTATTAAACAATTAATTTA+AGG - chr4.3:83470228-83470247 None:intergenic 10.0%
!!! TAATTTTATAAGTTTGATTT+TGG + chr4.3:83470448-83470467 MS.gene060835:intron 10.0%
!!! TTTATACTTTAAAATTTAGA+TGG + chr4.3:83474805-83474824 MS.gene060835:intron 10.0%
!! AAATTTACATGAATAAACTA+TGG - chr4.3:83474194-83474213 None:intergenic 15.0%
!! AACAATTCAAAAAAATTCTA+TGG + chr4.3:83474402-83474421 MS.gene060835:intron 15.0%
!! ATATATTCCAAATTCTATTT+AGG - chr4.3:83474474-83474493 None:intergenic 15.0%
!! TCTAATTTAGTAGTTAAAAA+GGG + chr4.3:83473909-83473928 MS.gene060835:intron 15.0%
!! TTCTAATTTAGTAGTTAAAA+AGG + chr4.3:83473908-83473927 MS.gene060835:intron 15.0%
!! TTTAACTACTAAATTAGAAA+GGG - chr4.3:83473907-83473926 None:intergenic 15.0%
!!! TGAAATAAAACTTTGTTATT+AGG - chr4.3:83471585-83471604 None:intergenic 15.0%
!!! TTTTAACTACTAAATTAGAA+AGG - chr4.3:83473908-83473927 None:intergenic 15.0%
!!! TTTTAGTTAGAATTAGTTTT+GGG + chr4.3:83470641-83470660 MS.gene060835:intron 15.0%
!!! TTTTTTTGAATTGTTTAGTT+TGG - chr4.3:83474397-83474416 None:intergenic 15.0%
!! AATCAGATAAAAAGTTCATT+TGG - chr4.3:83471224-83471243 None:intergenic 20.0%
!! ATGATAATAAGATTGTTCAT+AGG + chr4.3:83473362-83473381 MS.gene060835:intron 20.0%
!! CAAATTCAAACTATAATCAT+AGG - chr4.3:83470844-83470863 None:intergenic 20.0%
!! CCTGTTCAAAAATAAAAAAA+AGG - chr4.3:83475366-83475385 None:intergenic 20.0%
!! CTAATTTAGTAGTTAAAAAG+GGG + chr4.3:83473910-83473929 MS.gene060835:intron 20.0%
!! CTATGATTATAGTTTGAATT+TGG + chr4.3:83470842-83470861 MS.gene060835:intron 20.0%
!! GCATTAAATTAAAATGTGTA+AGG - chr4.3:83472823-83472842 None:intergenic 20.0%
!! TCTCAAAATTCTTATAGAAA+AGG + chr4.3:83471860-83471879 MS.gene060835:intron 20.0%
!! TGAAATATAAGATAAGAATG+AGG - chr4.3:83469970-83469989 None:intergenic 20.0%
!! TGATCAGAAATATTTATGTT+TGG - chr4.3:83470693-83470712 None:intergenic 20.0%
!! TTAACTACTAAATTAGAAAG+GGG - chr4.3:83473906-83473925 None:intergenic 20.0%
!! TTTGATGAACATATGTTAAA+GGG - chr4.3:83471441-83471460 None:intergenic 20.0%
!!! AGTGTAAATTGATTTATGTT+TGG + chr4.3:83472535-83472554 MS.gene060835:intron 20.0%
!!! ATGAACTTTTTATCTGATTT+TGG + chr4.3:83471225-83471244 MS.gene060835:intron 20.0%
!!! CAAAATGATTTTGAAATGTT+TGG + chr4.3:83470112-83470131 MS.gene060835:intron 20.0%
!!! CCATATAAGCTATTTTAATA+CGG - chr4.3:83472035-83472054 None:intergenic 20.0%
!!! CCTTTTTTTTATTTTTGAAC+AGG + chr4.3:83475363-83475382 MS.gene060835:intron 20.0%
!!! CTTTTAGTTAGAATTAGTTT+TGG + chr4.3:83470640-83470659 MS.gene060835:intron 20.0%
!!! TCATTTTCTCAAATTATTGT+CGG - chr4.3:83473587-83473606 None:intergenic 20.0%
!!! TTATGTTCTGAAAAATGAAA+AGG + chr4.3:83473233-83473252 MS.gene060835:CDS 20.0%
!!! TTTAGTCTTCAAACAAATTT+TGG + chr4.3:83470908-83470927 MS.gene060835:intron 20.0%
!!! TTTTGATGAACATATGTTAA+AGG - chr4.3:83471442-83471461 None:intergenic 20.0%
! AATAAGCAAAAAACAGCATA+TGG - chr4.3:83474947-83474966 None:intergenic 25.0%
! ATATAAAATGTTAGTGCTGT+CGG + chr4.3:83474546-83474565 MS.gene060835:intron 25.0%
! ATCAAGCTTAAATTGATAGA+AGG + chr4.3:83475233-83475252 MS.gene060835:CDS 25.0%
! ATGATGAATTAGTGTATGTT+TGG + chr4.3:83470071-83470090 MS.gene060835:intron 25.0%
! ATTGAAATTCACCATATAGA+GGG - chr4.3:83472924-83472943 None:intergenic 25.0%
! CAGTTTATGTTTGAATCATA+TGG + chr4.3:83470535-83470554 MS.gene060835:intron 25.0%
! CCGTATTAAAATAGCTTATA+TGG + chr4.3:83472032-83472051 MS.gene060835:intron 25.0%
! GAATCTAGAAAGAAACAAAA+AGG - chr4.3:83472902-83472921 None:intergenic 25.0%
! GGAAGACTTAAAAAGAATAA+CGG + chr4.3:83470872-83470891 MS.gene060835:intron 25.0%
! GGATACATTAATGTAAAAGT+GGG + chr4.3:83472556-83472575 MS.gene060835:intron 25.0%
! TAAAATCAAGAGATACATCT+AGG - chr4.3:83472436-83472455 None:intergenic 25.0%
! TAACTATCATAAGTACTTGT+GGG + chr4.3:83474882-83474901 MS.gene060835:intron 25.0%
! TAAGTGATTAAGTGTATGAT+TGG - chr4.3:83472755-83472774 None:intergenic 25.0%
! TATCAGTAACAAATCCAAAA+GGG - chr4.3:83469850-83469869 None:intergenic 25.0%
! TCCATGTGTTATAAAATACT+TGG - chr4.3:83470770-83470789 None:intergenic 25.0%
! TGGATACATTAATGTAAAAG+TGG + chr4.3:83472555-83472574 MS.gene060835:intron 25.0%
! TGTTGTGTCTAACATATATA+TGG + chr4.3:83472198-83472217 MS.gene060835:intron 25.0%
! TTAAATAAGTCAATCCAAAC+AGG - chr4.3:83474856-83474875 None:intergenic 25.0%
! TTATCAGTAACAAATCCAAA+AGG - chr4.3:83469851-83469870 None:intergenic 25.0%
! TTCAATGTAATCACATTTGT+TGG + chr4.3:83473612-83473631 MS.gene060835:intron 25.0%
! TTGATGAACATATGTTAAAG+GGG - chr4.3:83471440-83471459 None:intergenic 25.0%
! TTTATTTGCAAAATTCATCC+TGG + chr4.3:83472496-83472515 MS.gene060835:intron 25.0%
!! AAGGCTAAAAATTGATTCTA+AGG - chr4.3:83470209-83470228 None:intergenic 25.0%
!! AATTTAAGCTTGATGTTTTG+AGG - chr4.3:83475227-83475246 None:intergenic 25.0%
!! ACCAAGTATTTTATAACACA+TGG + chr4.3:83470766-83470785 MS.gene060835:intron 25.0%
!! AGAATATCTTTTGACATGTT+TGG - chr4.3:83472693-83472712 None:intergenic 25.0%
!! AGGCTAAAAATTGATTCTAA+GGG - chr4.3:83470208-83470227 None:intergenic 25.0%
!! CTAAATTTTACACCAAACTT+AGG + chr4.3:83473105-83473124 MS.gene060835:intron 25.0%
!! GATGATGTTTTTCATTTAGT+TGG + chr4.3:83471259-83471278 MS.gene060835:intron 25.0%
!! TAGTTTGAATTTGGTCATTT+TGG + chr4.3:83470851-83470870 MS.gene060835:intron 25.0%
!!! AAATTTTGCTGACTTAGAAT+TGG + chr4.3:83474238-83474257 MS.gene060835:intron 25.0%
!!! AATTTTGTCTTCTTTAAGAG+TGG + chr4.3:83472727-83472746 MS.gene060835:intron 25.0%
!!! AGCAAAATTTAGTTTTACTC+AGG - chr4.3:83474228-83474247 None:intergenic 25.0%
!!! TCATTTTCATTAGCTGTTTT+TGG + chr4.3:83471151-83471170 MS.gene060835:intron 25.0%
!!! TTTCTAGTTAGAATCAATTC+CGG - chr4.3:83470166-83470185 None:intergenic 25.0%
!!! TTTGCATTCAACTCATTTTT+AGG + chr4.3:83470274-83470293 MS.gene060835:intron 25.0%
AAGGTGAAGTAATTTATGTC+TGG + chr4.3:83470485-83470504 MS.gene060835:intron 30.0%
AATAATCAAGCTTCTGATGT+TGG + chr4.3:83474262-83474281 MS.gene060835:intron 30.0%
AATACAGAGGAAAAAACACT+TGG + chr4.3:83474122-83474141 MS.gene060835:intron 30.0%
ACAATAATAAGGTACAGAGA+GGG + chr4.3:83473741-83473760 MS.gene060835:intron 30.0%
AGACTCAAAAGAAAAACCTA+AGG - chr4.3:83470007-83470026 None:intergenic 30.0%
ATAATCAAGCTTCTGATGTT+GGG + chr4.3:83474263-83474282 MS.gene060835:intron 30.0%
ATGGCTGTGTACTTAAAATT+TGG + chr4.3:83470371-83470390 MS.gene060835:intron 30.0%
ATTTAGTAGTTAAAAAGGGG+TGG + chr4.3:83473913-83473932 MS.gene060835:intron 30.0%
CAAACTTGAAGCTAGAATTT+GGG - chr4.3:83472629-83472648 None:intergenic 30.0%
CACTACACCTAAATAGAATT+TGG + chr4.3:83474464-83474483 MS.gene060835:intron 30.0%
CATCTAGGAAACTATAGTAT+AGG - chr4.3:83472421-83472440 None:intergenic 30.0%
CATTGAAATTCACCATATAG+AGG - chr4.3:83472925-83472944 None:intergenic 30.0%
CCTCATGATTGACAATAATA+AGG + chr4.3:83473730-83473749 MS.gene060835:intron 30.0%
CCTTATTATTGTCAATCATG+AGG - chr4.3:83473733-83473752 None:intergenic 30.0%
CTAACTATCATAAGTACTTG+TGG + chr4.3:83474881-83474900 MS.gene060835:intron 30.0%
GACATGTAGAGCATAATATA+TGG - chr4.3:83472801-83472820 None:intergenic 30.0%
GCTAATGAAAATGAACTATC+AGG - chr4.3:83471145-83471164 None:intergenic 30.0%
GGTTTATTCATCAAGTTTAG+AGG - chr4.3:83472400-83472419 None:intergenic 30.0%
GTATGCTGTGAAAACAAAAT+GGG + chr4.3:83471002-83471021 MS.gene060835:intron 30.0%
TAAAGGCTATGTTTGGATTA+TGG - chr4.3:83471625-83471644 None:intergenic 30.0%
TACGGATCATATGTAAAATC+CGG + chr4.3:83471342-83471361 MS.gene060835:CDS 30.0%
TAGTAGTTGAAGAAATAGCA+AGG - chr4.3:83469691-83469710 None:intergenic 30.0%
TCAAACTTGAAGCTAGAATT+TGG - chr4.3:83472630-83472649 None:intergenic 30.0%
TCAAGTTTGAATCAATTCCT+GGG + chr4.3:83472640-83472659 MS.gene060835:intron 30.0%
TCATAATCTATCAGAGTTTG+TGG - chr4.3:83474971-83474990 None:intergenic 30.0%
TCCTAGAAAATACAAGACAA+GGG + chr4.3:83471312-83471331 MS.gene060835:intron 30.0%
TCCTGTTGTAAAATTAAGCT+CGG + chr4.3:83474004-83474023 MS.gene060835:intron 30.0%
TGGCTGTGTACTTAAAATTT+GGG + chr4.3:83470372-83470391 MS.gene060835:intron 30.0%
TGTATGCTGTGAAAACAAAA+TGG + chr4.3:83471001-83471020 MS.gene060835:intron 30.0%
TGTCAATCATGAGGAATATA+CGG - chr4.3:83473724-83473743 None:intergenic 30.0%
TTATTCTACTATGCCTTCTT+TGG - chr4.3:83475094-83475113 None:intergenic 30.0%
TTCCTAGAAAATACAAGACA+AGG + chr4.3:83471311-83471330 MS.gene060835:intron 30.0%
TTTACTCCAAAACCTAAGTT+TGG - chr4.3:83473120-83473139 None:intergenic 30.0%
TTTAGTAGTTAAAAAGGGGT+GGG + chr4.3:83473914-83473933 MS.gene060835:intron 30.0%
TTTCTCTCTCTTAAAACAGT+TGG + chr4.3:83471681-83471700 MS.gene060835:intron 30.0%
! AAAGAAGGCATAGTAGAATA+AGG + chr4.3:83475093-83475112 MS.gene060835:intron 30.0%
! AAATCATCATTCAACCCTTT+TGG + chr4.3:83469833-83469852 MS.gene060835:CDS 30.0%
! ACAAAGATCAAATGCAGTTT+TGG - chr4.3:83473001-83473020 None:intergenic 30.0%
! AGAAAAAATACACGTTGACT+TGG - chr4.3:83474614-83474633 None:intergenic 30.0%
! AGGATTTTCAGACAATTGAA+TGG - chr4.3:83469891-83469910 None:intergenic 30.0%
! ATCATCTTGATCATTGCTTT+TGG - chr4.3:83469810-83469829 None:intergenic 30.0%
! CTAAGTGTTTTATCCAAAGA+AGG + chr4.3:83475078-83475097 MS.gene060835:intron 30.0%
! TAAGCGATATAATGTTGACT+TGG - chr4.3:83474703-83474722 None:intergenic 30.0%
! TTCAAGTTTGAATCAATTCC+TGG + chr4.3:83472639-83472658 MS.gene060835:intron 30.0%
! TTTACACCAAACTTAGGTTT+TGG + chr4.3:83473111-83473130 MS.gene060835:intron 30.0%
! TTTTCACAGCATACATTTTG+AGG - chr4.3:83470996-83471015 None:intergenic 30.0%
! TTTTTCCTTTCCTTTTTGCA+GGG + chr4.3:83471469-83471488 MS.gene060835:intron 30.0%
!! AAGAAACAAAAAGGCATCAA+TGG - chr4.3:83472893-83472912 None:intergenic 30.0%
!! AGTAGAATTGATTTTGTCTC+CGG + chr4.3:83470144-83470163 MS.gene060835:intron 30.0%
!! GCTAATATTTCTAGCTTCTA+CGG - chr4.3:83470621-83470640 None:intergenic 30.0%
!! GTATCTCTTGATTTTAGTGT+GGG + chr4.3:83472440-83472459 MS.gene060835:intron 30.0%
!! TATCTCTTGATTTTAGTGTG+GGG + chr4.3:83472441-83472460 MS.gene060835:intron 30.0%
!! TGAATTGTTTAGTTTGGTGA+AGG - chr4.3:83474391-83474410 None:intergenic 30.0%
!! TGTATCTCTTGATTTTAGTG+TGG + chr4.3:83472439-83472458 MS.gene060835:intron 30.0%
!! TTGTTCTTGTTGTTGTAGAT+GGG + chr4.3:83475121-83475140 MS.gene060835:intron 30.0%
!! TTTGGTTGAAAGTTTGTTGA+AGG + chr4.3:83470466-83470485 MS.gene060835:intron 30.0%
!! TTTGTTCTTGTTGTTGTAGA+TGG + chr4.3:83475120-83475139 MS.gene060835:intron 30.0%
!!! AATGCAGTTTTGGATACATA+CGG - chr4.3:83472991-83473010 None:intergenic 30.0%
!!! CAATGCTTTTAACTTTCCTT+AGG + chr4.3:83469988-83470007 MS.gene060835:intron 30.0%
!!! GTTTTTTCCTCTGTATTGTT+TGG - chr4.3:83474119-83474138 None:intergenic 30.0%
!!! TTTTTTCCTTTCCTTTTTGC+AGG + chr4.3:83471468-83471487 MS.gene060835:intron 30.0%
AACCTACAAGAAATCCCTTA+AGG - chr4.3:83472234-83472253 None:intergenic 35.0%
AACTACTTGTGTAAGCAACA+TGG + chr4.3:83470352-83470371 MS.gene060835:intron 35.0%
AAGTTTGAATCAATTCCTGG+GGG + chr4.3:83472642-83472661 MS.gene060835:intron 35.0%
ACACATTCGATCATAAGTGT+CGG + chr4.3:83473650-83473669 MS.gene060835:intron 35.0%
ACCTGAACAACTAGGTAAAA+TGG - chr4.3:83471936-83471955 None:intergenic 35.0%
ACGGATCATATGTAAAATCC+GGG + chr4.3:83471343-83471362 MS.gene060835:CDS 35.0%
ACTTTCAGTGAAATAGCAGA+AGG + chr4.3:83474330-83474349 MS.gene060835:CDS 35.0%
AGAATGCTATTATTGCTGAG+CGG + chr4.3:83472947-83472966 MS.gene060835:CDS 35.0%
AGCAAAGGCTTATCGTATAA+GGG - chr4.3:83475045-83475064 None:intergenic 35.0%
AGGTCACTGATCAAACAAAA+AGG - chr4.3:83470976-83470995 None:intergenic 35.0%
AGTTAAGTGTGTGTTTGGTT+TGG - chr4.3:83470336-83470355 None:intergenic 35.0%
AGTTGAGCAGTTTATAGCAA+AGG - chr4.3:83475060-83475079 None:intergenic 35.0%
ATAAGCCGATAATGCTTGTT+TGG + chr4.3:83475144-83475163 MS.gene060835:CDS 35.0%
ATCTCTCAGAATCTCATGTT+TGG - chr4.3:83470730-83470749 None:intergenic 35.0%
ATGAAAAGGCTGATGTTTAC+CGG + chr4.3:83473247-83473266 MS.gene060835:CDS 35.0%
CAAGTAGTTAAGTGTGTGTT+TGG - chr4.3:83470341-83470360 None:intergenic 35.0%
CAAGTTTGAATCAATTCCTG+GGG + chr4.3:83472641-83472660 MS.gene060835:intron 35.0%
CAATAATAAGGTACAGAGAG+GGG + chr4.3:83473742-83473761 MS.gene060835:intron 35.0%
CTAATCGTGATACGAGTTAA+AGG - chr4.3:83471642-83471661 None:intergenic 35.0%
CTTAAATTGATAGAAGGAGC+TGG + chr4.3:83475239-83475258 MS.gene060835:CDS 35.0%
CTTCCTTCTAGCATATACAT+AGG - chr4.3:83473389-83473408 None:intergenic 35.0%
CTTTAGATACCTGAACAACT+AGG - chr4.3:83471944-83471963 None:intergenic 35.0%
CTTTCTAGATTCCCTCTATA+TGG + chr4.3:83472910-83472929 MS.gene060835:intron 35.0%
GAAATAGCAAGGTTTAGTGT+TGG - chr4.3:83469680-83469699 None:intergenic 35.0%
GAATTGATAAGCTGTGATAG+TGG + chr4.3:83474424-83474443 MS.gene060835:intron 35.0%
GACAATAATAAGGTACAGAG+AGG + chr4.3:83473740-83473759 MS.gene060835:intron 35.0%
GCCATGGGATTCTAATATTT+GGG + chr4.3:83474026-83474045 MS.gene060835:intron 35.0%
GGAACAATTGTATTCCTTCA+CGG + chr4.3:83471510-83471529 MS.gene060835:CDS 35.0%
GGATATGGTTTCAATTACAC+AGG + chr4.3:83471772-83471791 MS.gene060835:CDS 35.0%
GGATTTCTTGTAGGTTCATA+TGG + chr4.3:83472238-83472257 MS.gene060835:CDS 35.0%
GTGTAATTGAAACCATATCC+TGG - chr4.3:83471772-83471791 None:intergenic 35.0%
TAAAACAGTTGGCAGATTCA+GGG + chr4.3:83471692-83471711 MS.gene060835:intron 35.0%
TAACCTCAGACATAACAACT+CGG - chr4.3:83471560-83471579 None:intergenic 35.0%
TAAGCCGATAATGCTTGTTT+GGG + chr4.3:83475145-83475164 MS.gene060835:CDS 35.0%
TACACAGATCCCAAAATACT+AGG - chr4.3:83473489-83473508 None:intergenic 35.0%
TACGAGTTAAAGGCTATGTT+TGG - chr4.3:83471632-83471651 None:intergenic 35.0%
TAGCAAAGGCTTATCGTATA+AGG - chr4.3:83475046-83475065 None:intergenic 35.0%
TATCTTGCTTGAGTTCTTCA+AGG - chr4.3:83472275-83472294 None:intergenic 35.0%
TCAGAATCTCATGTTTGGAT+TGG - chr4.3:83470725-83470744 None:intergenic 35.0%
TCCCAAATATTAGAATCCCA+TGG - chr4.3:83474030-83474049 None:intergenic 35.0%
TCTTCTTCTGTTACAGTTGT+TGG - chr4.3:83469714-83469733 None:intergenic 35.0%
TGGCAGCACATCATTAAATT+AGG - chr4.3:83472781-83472800 None:intergenic 35.0%
TTAAAACAGTTGGCAGATTC+AGG + chr4.3:83471691-83471710 MS.gene060835:intron 35.0%
TTAGTAGTTAAAAAGGGGTG+GGG + chr4.3:83473915-83473934 MS.gene060835:intron 35.0%
TTATGTCACTAACCAAATCC+AGG - chr4.3:83473297-83473316 None:intergenic 35.0%
TTCTTCACACATGATGTACT+CGG - chr4.3:83474646-83474665 None:intergenic 35.0%
TTGCTCATACTTAAGTCACT+CGG - chr4.3:83473829-83473848 None:intergenic 35.0%
! AAAGCATCAACAACTTTCTC+AGG - chr4.3:83475389-83475408 None:intergenic 35.0%
! AAGTTTAGAGGTGCATTCAT+TGG - chr4.3:83472388-83472407 None:intergenic 35.0%
! CAAAATCATTTTGCCTACTC+CGG - chr4.3:83470105-83470124 None:intergenic 35.0%
! GAGCTTAATTTTACAACAGG+AGG - chr4.3:83474005-83474024 None:intergenic 35.0%
! GGAGGATAACCTAGTATTTT+GGG + chr4.3:83473477-83473496 MS.gene060835:intron 35.0%
! TCCATTTTACCTAGTTGTTC+AGG + chr4.3:83471932-83471951 MS.gene060835:CDS 35.0%
! TGGAGGATAACCTAGTATTT+TGG + chr4.3:83473476-83473495 MS.gene060835:intron 35.0%
! TGTTTACCGGTTACCTTATT+TGG + chr4.3:83473260-83473279 MS.gene060835:CDS 35.0%
!! AAAAGCGCGTTTTGTTCAAA+AGG + chr4.3:83470400-83470419 MS.gene060835:intron 35.0%
!! AATGTAAAAGTGGGCTAAAC+AGG + chr4.3:83472565-83472584 MS.gene060835:intron 35.0%
!! ATATAATGTTGACTTGGTGC+TGG - chr4.3:83474697-83474716 None:intergenic 35.0%
!! ATGTAAAAGTGGGCTAAACA+GGG + chr4.3:83472566-83472585 MS.gene060835:intron 35.0%
!! TGTATGTTTGGTTCTACTTC+CGG + chr4.3:83470083-83470102 MS.gene060835:intron 35.0%
!!! AAATTTTGGCTTAGCCATCT+AGG + chr4.3:83470922-83470941 MS.gene060835:intron 35.0%
!!! ATGCAGTTTTGGATACATAC+GGG - chr4.3:83472990-83473009 None:intergenic 35.0%
!!! GCTATTTTAATACGGTGTTG+TGG - chr4.3:83472027-83472046 None:intergenic 35.0%
!!! GTTAGAATTAGTTTTGGGAC+TGG + chr4.3:83470646-83470665 MS.gene060835:intron 35.0%
AAACCAAATCCTATCCAGTC+AGG - chr4.3:83471733-83471752 None:intergenic 40.0%
AAGCCGATAATGCTTGTTTG+GGG + chr4.3:83475146-83475165 MS.gene060835:CDS 40.0%
AAGGCCTATGGAAGAATAAG+AGG + chr4.3:83470949-83470968 MS.gene060835:intron 40.0%
ACTGAACAGAAAACAGATCG+TGG - chr4.3:83471109-83471128 None:intergenic 40.0%
AGAAGCTTATCTTGCCAAAC+CGG + chr4.3:83473874-83473893 MS.gene060835:intron 40.0%
AGGTCCTCTTATTCTTCCAT+AGG - chr4.3:83470956-83470975 None:intergenic 40.0%
AGTCTATCTTGAACCTGAAG+TGG + chr4.3:83474766-83474785 MS.gene060835:intron 40.0%
ATAGCAGAGGAGTTTCAGAA+AGG + chr4.3:83475197-83475216 MS.gene060835:CDS 40.0%
ATCATGAGGAATATACGGTG+AGG - chr4.3:83473719-83473738 None:intergenic 40.0%
ATGGTCACACTTCTCCTTAA+GGG + chr4.3:83472217-83472236 MS.gene060835:intron 40.0%
ATGTATCTCTTCGTACGAGA+AGG + chr4.3:83473769-83473788 MS.gene060835:intron 40.0%
CAAAACCAGTTTACCACTTC+AGG - chr4.3:83474782-83474801 None:intergenic 40.0%
CAGAAGGATTTGCAACTAAC+AGG + chr4.3:83474346-83474365 MS.gene060835:CDS 40.0%
CAGACAATTGAATGGCACTA+CGG - chr4.3:83469883-83469902 None:intergenic 40.0%
CGGTAGCTAAAAGATTGTGT+TGG - chr4.3:83471540-83471559 None:intergenic 40.0%
CTCCTTAAGGGATTTCTTGT+AGG + chr4.3:83472229-83472248 MS.gene060835:intron 40.0%
CTTACCTAGTCGTCTATATC+AGG + chr4.3:83473960-83473979 MS.gene060835:intron 40.0%
CTTGCTACCAAACAATACAG+AGG + chr4.3:83474109-83474128 MS.gene060835:intron 40.0%
GAAAATACAAGACAAGGGCA+AGG + chr4.3:83471317-83471336 MS.gene060835:intron 40.0%
GCAAGAAAAGCCAACTTCAA+CGG + chr4.3:83474306-83474325 MS.gene060835:CDS 40.0%
GCTCAGCAATAATAGCATTC+TGG - chr4.3:83472948-83472967 None:intergenic 40.0%
GGACCTATGTATATGCTAGA+AGG + chr4.3:83473383-83473402 MS.gene060835:intron 40.0%
GGCCATGGGATTCTAATATT+TGG + chr4.3:83474025-83474044 MS.gene060835:intron 40.0%
GTAAAATTAAGCTCGGCCAT+GGG + chr4.3:83474011-83474030 MS.gene060835:intron 40.0%
GTCATATGCCACAAGAAGAT+TGG + chr4.3:83475261-83475280 MS.gene060835:CDS 40.0%
TAAAATCCGGGAAGTTGAGA+TGG + chr4.3:83471355-83471374 MS.gene060835:CDS 40.0%
TACTAAATTAGAAAGGGGCG+AGG - chr4.3:83473901-83473920 None:intergenic 40.0%
TACTAGGTTATCCTCCAACT+AGG - chr4.3:83473473-83473492 None:intergenic 40.0%
TACTCTCACCAATCTTCTTG+TGG - chr4.3:83475272-83475291 None:intergenic 40.0%
TAGTAGTTAAAAAGGGGTGG+GGG + chr4.3:83473916-83473935 MS.gene060835:intron 40.0%
TATGGTCACACTTCTCCTTA+AGG + chr4.3:83472216-83472235 MS.gene060835:intron 40.0%
TCGGTATTATGCTGAGTGTA+GGG + chr4.3:83474565-83474584 MS.gene060835:intron 40.0%
TGCTGAAATAGTCCAGGAAT+GGG - chr4.3:83472340-83472359 None:intergenic 40.0%
TGCTTGCCAAATAAGGTAAC+CGG - chr4.3:83473269-83473288 None:intergenic 40.0%
TGTAAAATTAAGCTCGGCCA+TGG + chr4.3:83474010-83474029 MS.gene060835:intron 40.0%
TGTTAAGATCCTGCATCAAC+AGG - chr4.3:83474738-83474757 None:intergenic 40.0%
TTAATGAAGTGATCCACGTG+AGG - chr4.3:83473143-83473162 None:intergenic 40.0%
TTGAACCTGAAGTGGTAAAC+TGG + chr4.3:83474774-83474793 MS.gene060835:intron 40.0%
! ACTTTATGCGCTCCTTTTCT+AGG + chr4.3:83473677-83473696 MS.gene060835:intron 40.0%
! ATAAACTGCTCGAGGTGTTA+GGG + chr4.3:83471901-83471920 MS.gene060835:CDS 40.0%
! CTTTATGCGCTCCTTTTCTA+GGG + chr4.3:83473678-83473697 MS.gene060835:intron 40.0%
! GAAGTTGAGATGGTTTGTGA+GGG + chr4.3:83471365-83471384 MS.gene060835:CDS 40.0%
! GCCCTTGTCTTGTATTTTCT+AGG - chr4.3:83471316-83471335 None:intergenic 40.0%
! GCCGAGCTTAATTTTACAAC+AGG - chr4.3:83474008-83474027 None:intergenic 40.0%
! TTACCTTATTTGGCAAGCAG+TGG + chr4.3:83473270-83473289 MS.gene060835:CDS 40.0%
! TTGTTTGGTAGCAAGTCTCT+CGG - chr4.3:83474104-83474123 None:intergenic 40.0%
!! ACTGAAAGTACCGTTGAAGT+TGG - chr4.3:83474319-83474338 None:intergenic 40.0%
!! ATACACGTTGACTTGGTTGT+TGG - chr4.3:83474607-83474626 None:intergenic 40.0%
!! ATGGGAGATGAGCTTGTTAA+TGG - chr4.3:83472322-83472341 None:intergenic 40.0%
!! CATTTGTTGGTGTCACACAT+TGG + chr4.3:83473625-83473644 MS.gene060835:intron 40.0%
!! GATTTTAGTGTGGGGTTTTG+CGG + chr4.3:83472449-83472468 MS.gene060835:intron 40.0%
!! GTAAAATTGATTTTGCCCCC+AGG - chr4.3:83472660-83472679 None:intergenic 40.0%
!! TACACGTTGACTTGGTTGTT+GGG - chr4.3:83474606-83474625 None:intergenic 40.0%
!! TTCTAGCTTCTACGGTAAGA+TGG - chr4.3:83470613-83470632 None:intergenic 40.0%
!!! CTCGACTCACTATTTTAACC+AGG - chr4.3:83472517-83472536 None:intergenic 40.0%
AAAGGAGTTCCACGATGCAT+TGG + chr4.3:83471878-83471897 MS.gene060835:CDS 45.0%
AACCATGTTCCTGTTGATGC+AGG + chr4.3:83474726-83474745 MS.gene060835:intron 45.0%
AACTCCTCTGCTATAGACTG+TGG - chr4.3:83475191-83475210 None:intergenic 45.0%
AGAGACTAGAGCCATTACGA+CGG - chr4.3:83471036-83471055 None:intergenic 45.0%
AGCACCTGATATAGACGACT+AGG - chr4.3:83473967-83473986 None:intergenic 45.0%
AGCCCCCAAACAAGCATTAT+CGG - chr4.3:83475152-83475171 None:intergenic 45.0%
AGCCGATAATGCTTGTTTGG+GGG + chr4.3:83475147-83475166 MS.gene060835:CDS 45.0%
AGTCAATCCAAACAGGCTCT+AGG - chr4.3:83474849-83474868 None:intergenic 45.0%
ATCCAAACCTAGAGCCTGTT+TGG + chr4.3:83474839-83474858 MS.gene060835:intron 45.0%
ATCCTGCATCAACAGGAACA+TGG - chr4.3:83474731-83474750 None:intergenic 45.0%
ATGCGATGTCCATGCTTCAT+AGG - chr4.3:83473553-83473572 None:intergenic 45.0%
CAAGACAAGGGCAAGGAATA+CGG + chr4.3:83471324-83471343 MS.gene060835:CDS 45.0%
CACAAACCATCTCAACTTCC+CGG - chr4.3:83471364-83471383 None:intergenic 45.0%
CATAGGCCTTAGTTCCTAGA+TGG - chr4.3:83470939-83470958 None:intergenic 45.0%
CATCTAGGAACTAAGGCCTA+TGG + chr4.3:83470937-83470956 MS.gene060835:intron 45.0%
CTACCGAGTTGTTATGTCTG+AGG + chr4.3:83471554-83471573 MS.gene060835:CDS 45.0%
CTGCTGAAATAGTCCAGGAA+TGG - chr4.3:83472341-83472360 None:intergenic 45.0%
CTGGACTATTTCAGCAGCTA+AGG + chr4.3:83472344-83472363 MS.gene060835:CDS 45.0%
CTTAGCTGCTGAAATAGTCC+AGG - chr4.3:83472346-83472365 None:intergenic 45.0%
GCAGTTTATCCAATGCATCG+TGG - chr4.3:83471890-83471909 None:intergenic 45.0%
GCTGAGCGGTTTATTGAAAG+AGG + chr4.3:83472961-83472980 MS.gene060835:CDS 45.0%
GCTTAGCCATCTAGGAACTA+AGG + chr4.3:83470930-83470949 MS.gene060835:intron 45.0%
GGCAAGATAAGCTTCTAACG+AGG - chr4.3:83473870-83473889 None:intergenic 45.0%
GTCGGTATTATGCTGAGTGT+AGG + chr4.3:83474564-83474583 MS.gene060835:intron 45.0%
TCAAGCACAAGTTCATGCAG+AGG + chr4.3:83469737-83469756 MS.gene060835:CDS 45.0%
TCTGAAAATCCTGCTGAAGC+TGG + chr4.3:83469899-83469918 MS.gene060835:CDS 45.0%
TCTTTGCTGACCCTGCAAAA+AGG - chr4.3:83471482-83471501 None:intergenic 45.0%
TGCATTGGATAAACTGCTCG+AGG + chr4.3:83471893-83471912 MS.gene060835:CDS 45.0%
TTGAAACCATATCCTGGCTG+TGG - chr4.3:83471766-83471785 None:intergenic 45.0%
TTGTCTGAAAACGCAAGTCC+AGG + chr4.3:83473418-83473437 MS.gene060835:intron 45.0%
! AGATGGTTTGTGAGGGAAAC+TGG + chr4.3:83471372-83471391 MS.gene060835:CDS 45.0%
! AGGTTCATATGGACTGACCT+GGG + chr4.3:83472249-83472268 MS.gene060835:CDS 45.0%
! GATAAACTGCTCGAGGTGTT+AGG + chr4.3:83471900-83471919 MS.gene060835:CDS 45.0%
! GATAGTGGTAGAGAAGGCTA+AGG + chr4.3:83474439-83474458 MS.gene060835:intron 45.0%
! GGAAGTTGAGATGGTTTGTG+AGG + chr4.3:83471364-83471383 MS.gene060835:CDS 45.0%
! GTACTTGTGGGACTGTTTTC+AGG + chr4.3:83474894-83474913 MS.gene060835:intron 45.0%
! TAAACTGCTCGAGGTGTTAG+GGG + chr4.3:83471902-83471921 MS.gene060835:CDS 45.0%
! TAGGTTCATATGGACTGACC+TGG + chr4.3:83472248-83472267 MS.gene060835:CDS 45.0%
!! ACACGTTGACTTGGTTGTTG+GGG - chr4.3:83474605-83474624 None:intergenic 45.0%
!! AGCTGTGATAGTGGTAGAGA+AGG + chr4.3:83474433-83474452 MS.gene060835:intron 45.0%
!! ATCCAAACAGGCTCTAGGTT+TGG - chr4.3:83474844-83474863 None:intergenic 45.0%
!! TTTGGTTCTACTTCCGGAGT+AGG + chr4.3:83470089-83470108 MS.gene060835:intron 45.0%
!!! GTTTTGGAGTAAACCTCACG+TGG + chr4.3:83473127-83473146 MS.gene060835:intron 45.0%
AACGAGGTGACTCGTTCACT+TGG - chr4.3:83473854-83473873 None:intergenic 50.0%
AATTAGAAAGGGGCGAGGAC+CGG - chr4.3:83473896-83473915 None:intergenic 50.0%
ACAAGCTCATCTCCCATTCC+TGG + chr4.3:83472325-83472344 MS.gene060835:CDS 50.0%
ACGAGGTGACTCGTTCACTT+GGG - chr4.3:83473853-83473872 None:intergenic 50.0%
ATGCATCCGCCTATGAAGCA+TGG + chr4.3:83473541-83473560 MS.gene060835:intron 50.0%
CACTTCTGACCAAGAAGCTC+CGG + chr4.3:83474668-83474687 MS.gene060835:intron 50.0%
CGATGTCCATGCTTCATAGG+CGG - chr4.3:83473550-83473569 None:intergenic 50.0%
CTTGCCACAGTCTATAGCAG+AGG + chr4.3:83475184-83475203 MS.gene060835:CDS 50.0%
GCTGACCCTGCAAAAAGGAA+AGG - chr4.3:83471477-83471496 None:intergenic 50.0%
GGTCCACTGCTTGCCAAATA+AGG - chr4.3:83473276-83473295 None:intergenic 50.0%
TAGTTAAAAAGGGGTGGGGG+CGG + chr4.3:83473919-83473938 MS.gene060835:intron 50.0%
TATTTGGCAAGCAGTGGACC+TGG + chr4.3:83473276-83473295 MS.gene060835:CDS 50.0%
TGAATGGCACTACGGCTTGA+TGG - chr4.3:83469875-83469894 None:intergenic 50.0%
TTCACGCCCAACCCTAGAAA+AGG - chr4.3:83473692-83473711 None:intergenic 50.0%
TTGAGGCTCAGGGACTGTTT+CGG - chr4.3:83474053-83474072 None:intergenic 50.0%
! CCTTTTAGGCTTGAGGCTCA+GGG - chr4.3:83474063-83474082 None:intergenic 50.0%
!! AAAGGCGAAGGCACTCTCAT+TGG + chr4.3:83474078-83474097 MS.gene060835:intron 50.0%
!! CAGGCTCTAGGTTTGGATAC+TGG - chr4.3:83474837-83474856 None:intergenic 50.0%
!! GTTGACTTGGTGCTGGTTTC+CGG - chr4.3:83474690-83474709 None:intergenic 50.0%
!!! ATGCGCTCCTTTTCTAGGGT+TGG + chr4.3:83473682-83473701 MS.gene060835:intron 50.0%
!!! TGAGAGTGCCTTCGCCTTTT+AGG - chr4.3:83474077-83474096 None:intergenic 50.0%
!!! TGCGCTCCTTTTCTAGGGTT+GGG + chr4.3:83473683-83473702 MS.gene060835:intron 50.0%
AGGGTCAGTGGTGACCTAGT+TGG + chr4.3:83473456-83473475 MS.gene060835:intron 55.0%
AGGTCACCACTGACCCTGAA+TGG - chr4.3:83473453-83473472 None:intergenic 55.0%
CAGGTCACCGTCTCCATTCA+GGG + chr4.3:83473437-83473456 MS.gene060835:intron 55.0%
CCAACATTGCCAGCTTCAGC+AGG - chr4.3:83469911-83469930 None:intergenic 55.0%
CCACTGACCCTGAATGGAGA+CGG - chr4.3:83473447-83473466 None:intergenic 55.0%
CCCTGAGCCTCAAGCCTAAA+AGG + chr4.3:83474060-83474079 MS.gene060835:intron 55.0%
CCTGCTGAAGCTGGCAATGT+TGG + chr4.3:83469908-83469927 MS.gene060835:CDS 55.0%
GACAAGCCACAGCCAGGATA+TGG + chr4.3:83471757-83471776 MS.gene060835:CDS 55.0%
GCAAGCAGTGGACCTGGATT+TGG + chr4.3:83473282-83473301 MS.gene060835:CDS 55.0%
GCCTCAAGCCTAAAAGGCGA+AGG + chr4.3:83474066-83474085 MS.gene060835:intron 55.0%
GCGCCTGACTGGATAGGATT+TGG + chr4.3:83471727-83471746 MS.gene060835:CDS 55.0%
GCTTGAGTTCTTCAAGGCCC+AGG - chr4.3:83472269-83472288 None:intergenic 55.0%
GGGCAATGCTACCGTCGTAA+TGG + chr4.3:83471022-83471041 MS.gene060835:intron 55.0%
GGGTCAGCAAAGAGTAGACG+AGG + chr4.3:83471489-83471508 MS.gene060835:intron 55.0%
GTCAGTGGTGACCTAGTTGG+AGG + chr4.3:83473459-83473478 MS.gene060835:intron 55.0%
TGCTTTGCGCCTGACTGGAT+AGG + chr4.3:83471721-83471740 MS.gene060835:CDS 55.0%
TTCACTGCTTTGCGCCTGAC+TGG + chr4.3:83471716-83471735 MS.gene060835:CDS 55.0%
TTCAGTGACAAGCCACAGCC+AGG + chr4.3:83471751-83471770 MS.gene060835:CDS 55.0%
! ATTGTGTTGGCGCTCCGTGA+AGG - chr4.3:83471527-83471546 None:intergenic 55.0%
! GCCTTCGCCTTTTAGGCTTG+AGG - chr4.3:83474070-83474089 None:intergenic 55.0%
! GCCTTTTAGGCTTGAGGCTC+AGG - chr4.3:83474064-83474083 None:intergenic 55.0%
!! CGTTGACTTGGTTGTTGGGG+TGG - chr4.3:83474602-83474621 None:intergenic 55.0%
!! TGCTGGTTTCCGGAGCTTCT+TGG - chr4.3:83474680-83474699 None:intergenic 55.0%
CCAGGTCACCGTCTCCATTC+AGG + chr4.3:83473436-83473455 MS.gene060835:intron 60.0%
CCGTCTCCATTCAGGGTCAG+TGG + chr4.3:83473444-83473463 MS.gene060835:intron 60.0%
CCTGAATGGAGACGGTGACC+TGG - chr4.3:83473439-83473458 None:intergenic 60.0%
GAAAGGGGCGAGGACCGGTT+TGG - chr4.3:83473891-83473910 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 83469653 83475424 83469653 ID=MS.gene060835
chr4.3 mRNA 83469653 83475424 83469653 ID=MS.gene060835.t1;Parent=MS.gene060835
chr4.3 exon 83469653 83469943 83469653 ID=MS.gene060835.t1.exon1;Parent=MS.gene060835.t1
chr4.3 CDS 83469653 83469943 83469653 ID=cds.MS.gene060835.t1;Parent=MS.gene060835.t1
chr4.3 exon 83471318 83471393 83471318 ID=MS.gene060835.t1.exon2;Parent=MS.gene060835.t1
chr4.3 CDS 83471318 83471393 83471318 ID=cds.MS.gene060835.t1;Parent=MS.gene060835.t1
chr4.3 exon 83471490 83471575 83471490 ID=MS.gene060835.t1.exon3;Parent=MS.gene060835.t1
chr4.3 CDS 83471490 83471575 83471490 ID=cds.MS.gene060835.t1;Parent=MS.gene060835.t1
chr4.3 exon 83471700 83471793 83471700 ID=MS.gene060835.t1.exon4;Parent=MS.gene060835.t1
chr4.3 CDS 83471700 83471793 83471700 ID=cds.MS.gene060835.t1;Parent=MS.gene060835.t1
chr4.3 exon 83471877 83471953 83471877 ID=MS.gene060835.t1.exon5;Parent=MS.gene060835.t1
chr4.3 CDS 83471877 83471953 83471877 ID=cds.MS.gene060835.t1;Parent=MS.gene060835.t1
chr4.3 exon 83472238 83472365 83472238 ID=MS.gene060835.t1.exon6;Parent=MS.gene060835.t1
chr4.3 CDS 83472238 83472365 83472238 ID=cds.MS.gene060835.t1;Parent=MS.gene060835.t1
chr4.3 exon 83472918 83472989 83472918 ID=MS.gene060835.t1.exon7;Parent=MS.gene060835.t1
chr4.3 CDS 83472918 83472989 83472918 ID=cds.MS.gene060835.t1;Parent=MS.gene060835.t1
chr4.3 exon 83473233 83473303 83473233 ID=MS.gene060835.t1.exon8;Parent=MS.gene060835.t1
chr4.3 CDS 83473233 83473303 83473233 ID=cds.MS.gene060835.t1;Parent=MS.gene060835.t1
chr4.3 exon 83474292 83474367 83474292 ID=MS.gene060835.t1.exon9;Parent=MS.gene060835.t1
chr4.3 CDS 83474292 83474367 83474292 ID=cds.MS.gene060835.t1;Parent=MS.gene060835.t1
chr4.3 exon 83475139 83475282 83475139 ID=MS.gene060835.t1.exon10;Parent=MS.gene060835.t1
chr4.3 CDS 83475139 83475282 83475139 ID=cds.MS.gene060835.t1;Parent=MS.gene060835.t1
chr4.3 exon 83475385 83475424 83475385 ID=MS.gene060835.t1.exon11;Parent=MS.gene060835.t1
chr4.3 CDS 83475385 83475424 83475385 ID=cds.MS.gene060835.t1;Parent=MS.gene060835.t1
Gene Sequence

>MS.gene060835

ATGGTGTTTTCTACTATGTATTCTCCAACACTAAACCTTGCTATTTCTTCAACTACTACCAACAACTGTAACAGAAGAAGAGCATCAAGCACAAGTTCATGCAGAGGAGTGAATAGTATAAGAATCATAGCTAGTTCTACAGAGAAAAGTGAATCCAAAAGCAATGATCAAGATGATGATAAATCATCATTCAACCCTTTTGGATTTGTTACTGATAATCCATCAAGCCGTAGTGCCATTCAATTGTCTGAAAATCCTGCTGAAGCTGGCAATGTTGGACAAATGATAGATGTAATCACTTTTTGTTGATGTTTCCTCATTCTTATCTTATATTTCAATGCTTTTAACTTTCCTTAGGTTTTTCTTTTGAGTCTTGATAATAACAGTTATATGTTTAGAAGAGCTTATTTAGATTTTTATGATGAATTAGTGTATGTTTGGTTCTACTTCCGGAGTAGGCAAAATGATTTTGAAATGTTTGGATGCTAGCTAGTAGAATTGATTTTGTCTCCGGAATTGATTCTAACTAGAAACTAGAATTTGTAGCTTTAGCCCTTAGAATCAATTTTTAGCCTTAAATTAATTGTTTAATACACATGAATGTATACAATTATAAATGACTTTGCATTCAACTCATTTTTAGGTAGAATCAATTCATTTAAAATCAATATTTGTTTTCGCCAAACCAAACACACACTTAACTACTTGTGTAAGCAACATGGCTGTGTACTTAAAATTTGGGAGTTTAAAAGCGCGTTTTGTTCAAAAGGTGACTAAAATCGATTTTGTCTAAATTAATTTTATAAGTTTGATTTTGGTTGAAAGTTTGTTGAAGGTGAAGTAATTTATGTCTGGATACATTCATGAAAAAAGTGATTTTATCAGTTTATGTTTGAATCATATGGTACAAAATTGCTTTTATGTTTGTATATATGTCAATAAATTTGAGAATTGACTCCATCTTACCGTAGAAGCTAGAAATATTAGCTTTTAGTTAGAATTAGTTTTGGGACTGGAATCAATTTTAAAGATGAAAGCCAAACATAAATATTTCTGATCAAATGTTTGACCAATCCAAACATGAGATTCTGAGAGATACAAATGTGAACATAGACCAAGTATTTTATAACACATGGATGATTTTTTTTAGTCTTAATTTTGTTAGTTTTCAAATGACTCATTATTTTTCCTATGATTATAGTTTGAATTTGGTCATTTTGGAAGACTTAAAAAGAATAACGGTGAGACACTTGATTTTAGTCTTCAAACAAATTTTGGCTTAGCCATCTAGGAACTAAGGCCTATGGAAGAATAAGAGGACCTTTTTGTTTGATCAGTGACCTCAAAATGTATGCTGTGAAAACAAAATGGGCAATGCTACCGTCGTAATGGCTCTAGTCTCTACGAACTTGTGCGTAAGTGTTTGAAAGAGCTTAAAAATCTTATGATATTTCCACGATCTGTTTTCTGTTCAGTTTCACAAGTTATTCCTGATAGTTCATTTTCATTAGCTGTTTTTGGCTTGTATGCAAGATGTTATTCGATAAGCGCTTAATTAAGCTGTTCATCCAAATGAACTTTTTATCTGATTTTGGATAACAATACTGATGATGTTTTTCATTTAGTTGGAATATAATGATAAATTTGTGATTTTTGTATTCCTAGAAAATACAAGACAAGGGCAAGGAATACGGATCATATGTAAAATCCGGGAAGTTGAGATGGTTTGTGAGGGAAACTGGTATCATTTCTTTGTTGTTAAAATACTTTTGATCTCTACTTTTCCCCTTTAACATATGTTCATCAAAAATGTTGTTTTTTCCTTTCCTTTTTGCAGGGTCAGCAAAGAGTAGACGAGGAACAATTGTATTCCTTCACGGAGCGCCAACACAATCTTTTAGCTACCGAGTTGTTATGTCTGAGGTTATTCCTAATAACAAAGTTTTATTTCATTCTATTCTATCAGTTTCCATAATCCAAACATAGCCTTTAACTCGTATCACGATTAGCGAATTAATAATATTTTAATTTCTCTCTCTTAAAACAGTTGGCAGATTCAGGGTTTCACTGCTTTGCGCCTGACTGGATAGGATTTGGTTTCAGTGACAAGCCACAGCCAGGATATGGTTTCAATTACACAGGTGTTATCATGAATGATCTTATGTTATGATTAATTTTCATGCATAAATCACTTACATGTTGTTCTTTCTCAAAATTCTTATAGAAAAGGAGTTCCACGATGCATTGGATAAACTGCTCGAGGTGTTAGGGGTAGAGTCTCCATTTTACCTAGTTGTTCAGGTATCTAAAGAACGATGAATACAATCAGTGATATCATTTCTGTTTTCAACTTATTTTGATGATGAGTTCTCCACAACACCGTATTAAAATAGCTTATATGGAAAAAGTTTGAATTTATTTTATCTTTTGTTACATAAATAGCTTATAAATAAGCACTTATTGATAAGCGTTTATTCTAGAAGTGCTTAATTATATACAAATGAATATACTAGTTGAATTTTATGTTTTGTAAACTTTTACAAAATGTTGTGTCTAACATATATATGGTCACACTTCTCCTTAAGGGATTTCTTGTAGGTTCATATGGACTGACCTGGGCCTTGAAGAACTCAAGCAAGATATCAAAGCTAGCAATACTAAACAGTCCATTAACAAGCTCATCTCCCATTCCTGGACTATTTCAGCAGCTAAGGTTTTGTGCTCTTATGATACCAATGAATGCACCTCTAAACTTGATGAATAAACCTATACTATAGTTTCCTAGATGTATCTCTTGATTTTAGTGTGGGGTTTTGCGGTGACAAAAATTGATTTTGAATAAATTTATTTGCAAAATTCATCCTGGTTAAAATAGTGAGTCGAGTGTAAATTGATTTATGTTTGGATACATTAATGTAAAAGTGGGCTAAACAGGGTTAAACAAGACTGCAAATCAATTGCAGAAGAAAAAGTCCCAAATTCTAGCTTCAAGTTTGAATCAATTCCTGGGGGCAAAATCAATTTTACTTGAGAACATCCAAACATGTCAAAAGATATTCTACAACTCTAGAATCAATTTTGTCTTCTTTAAGAGTGGAACCAATCATACACTTAATCACTTAAAGCCTAATTTAATGATGTGCTGCCATATATTATGCTCTACATGTCCTTACACATTTTAATTTAATGCTTCTTTCTTATGTCTCTTGAGATATGTTAGTTGCAAGTATGTTAAATCCATTGATGCCTTTTTGTTTCTTTCTAGATTCCCTCTATATGGTGAATTTCAATGCCAGAATGCTATTATTGCTGAGCGGTTTATTGAAAGAGGTAGCCCGTATGTATCCAAAACTGCATTTGATCTTTGTCACACAAAATTGATTTTATCTTTAAACTTCAATTTGACTAGAAGTGATAAAAAGCAGCTTTTACATTAAGTTGAAAAATTTACACTAAATTTTACACCAAACTTAGGTTTTGGAGTAAACCTCACGTGGATCACTTCATTAAATTTTACAAAATCAATTTCATTCAAAATCATTTGTGACAAACACTCACTTATCGATGCATTATTTTGCAGTTATGTTCTGAAAAATGAAAAGGCTGATGTTTACCGGTTACCTTATTTGGCAAGCAGTGGACCTGGATTTGGTTAGTGACATAATTTTGATAGCTTGAATTTTCTGAATGTGTTTGCTGTCAAAATATGATGATAATAAGATTGTTCATAGGACCTATGTATATGCTAGAAGGAAGTATATGTTCTTGTCTGAAAACGCAAGTCCAGGTCACCGTCTCCATTCAGGGTCAGTGGTGACCTAGTTGGAGGATAACCTAGTATTTTGGGATCTGTGTAAAGCTTTCTATTTCTGCTCATTAGTCTTTTATATGCATCCGCCTATGAAGCATGGACATCGCATACACGTTGACACCGACAATAATTTGAGAAAATGACATATTTCAATGTAATCACATTTGTTGGTGTCACACATTGGACACACATTCGATCATAAGTGTCGGTGCTACTTTATGCGCTCCTTTTCTAGGGTTGGGCGTGAATTGTCCTCACCGTATATTCCTCATGATTGACAATAATAAGGTACAGAGAGGGGACACATGTATCTCTTCGTACGAGAAGGATATTTTAGTGTTAGAGAGACTTATCTGATTTGACCGAGTGACTTAAGTATGAGCAAGCCCAAGTGAACGAGTCACCTCGTTAGAAGCTTATCTTGCCAAACCGGTCCTCGCCCCTTTCTAATTTAGTAGTTAAAAAGGGGTGGGGGCGGTTGCTTCCCTCATTATGGCTTACCTAGTCGTCTATATCAGGTGCTTTTTGAGATAAATTGCCTCCTGTTGTAAAATTAAGCTCGGCCATGGGATTCTAATATTTGGGACCGAAACAGTCCCTGAGCCTCAAGCCTAAAAGGCGAAGGCACTCTCATTGGCCGAGAGACTTGCTACCAAACAATACAGAGGAAAAAACACTTGGTGCTAAGTTCATATTTATATCAATGAAAAATATTATTGTAGATTATCCATAGTTTATTCATGTAAATTTTATGCAATGAACCTGAGTAAAACTAAATTTTGCTGACTTAGAATTGGCAATAATCAAGCTTCTGATGTTGGGTTTCAGCTCTACTTGAAGCAGCAAGAAAAGCCAACTTCAACGGTACTTTCAGTGAAATAGCAGAAGGATTTGCAACTAACAGGTATATTTATTGAATTTTAGCCTTCACCAAACTAAACAATTCAAAAAAATTCTATGGAATTGATAAGCTGTGATAGTGGTAGAGAAGGCTAAGGAACACTACACCTAAATAGAATTTGGAATATATTTCTTACATAAAAGCGACATATAATGTATATAATATATAGTATACATATAATATATAAAATGTTAGTGCTGTCGGTATTATGCTGAGTGTAGGGTAAGAACACTTCCACCCCAACAACCAAGTCAACGTGTATTTTTTCTAGATTCGAACCGAGTACATCATGTGTGAAGAACTCACTTCTGACCAAGAAGCTCCGGAAACCAGCACCAAGTCAACATTATATCGCTTAAATAACCATGTTCCTGTTGATGCAGGATCTTAACAAAATTTAAAGTCTATCTTGAACCTGAAGTGGTAAACTGGTTTTGATATTTATACTTTAAAATTTAGATGGAATAAACCAGTATCCAAACCTAGAGCCTGTTTGGATTGACTTATTTAAGCTTACTAACTATCATAAGTACTTGTGGGACTGTTTTCAGGAGCTTGTGAAAAGAACTTATGACATGTCCATATGCTGTTTTTTGCTTATTTCCACAAACTCTGATAGATTATGAAACAGTTTGACTTTATTTTATCTTTTGTTATAAAAACAACTTATACATAAGCCCTTATACGATAAGCCTTTGCTATAAACTGCTCAACTAAGTGTTTTATCCAAAGAAGGCATAGTAGAATAAGGCTTGTTTGTTCTTGTTGTTGTAGATGGGATAAGCCGATAATGCTTGTTTGGGGGCTATCAGACAAGTACTTGCCACAGTCTATAGCAGAGGAGTTTCAGAAAGGAAATCCTCAAAACATCAAGCTTAAATTGATAGAAGGAGCTGGTCATATGCCACAAGAAGATTGGTGAGAGTAACTTTAACATATATGATTCATTCAAGTGCATTGTAGAAAATTTTGTTTTATTCAATCTGTTAAAAATTTAACCTTTTTTTTATTTTTGAACAGGCCTGAGAAAGTTGTTGATGCTTTGAGAATGTTCTTTTGA

Protein sequence

>MS.gene060835.t1

MVFSTMYSPTLNLAISSTTTNNCNRRRASSTSSCRGVNSIRIIASSTEKSESKSNDQDDDKSSFNPFGFVTDNPSSRSAIQLSENPAEAGNVGQMIDKIQDKGKEYGSYVKSGKLRWFVRETGSAKSRRGTIVFLHGAPTQSFSYRVVMSELADSGFHCFAPDWIGFGFSDKPQPGYGFNYTEKEFHDALDKLLEVLGVESPFYLVVQGFLVGSYGLTWALKNSSKISKLAILNSPLTSSSPIPGLFQQLRFPLYGEFQCQNAIIAERFIERGSPYVLKNEKADVYRLPYLASSGPGFALLEAARKANFNGTFSEIAEGFATNRWDKPIMLVWGLSDKYLPQSIAEEFQKGNPQNIKLKLIEGAGHMPQEDWPEKVVDALRMFF