Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069689.t1 | XP_003620064.1 | 98.7 | 593 | 3 | 1 | 1 | 593 | 1 | 588 | 0.00E+00 | 1144.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069689.t1 | Q9ZPS7 | 87.2 | 588 | 70 | 2 | 7 | 593 | 9 | 592 | 3.0e-291 | 1001.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069689.t1 | G7KJN8 | 98.7 | 593 | 3 | 1 | 1 | 593 | 1 | 588 | 0.0e+00 | 1144.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049195 | MS.gene069689 | -0.81453 | 1.47E-51 | -1.69E-46 |
| MS.gene049993 | MS.gene069689 | -0.814748 | 1.32E-51 | -1.69E-46 |
| MS.gene051983 | MS.gene069689 | -0.818643 | 1.76E-52 | -1.69E-46 |
| MS.gene052011 | MS.gene069689 | 0.807551 | 4.78E-50 | -1.69E-46 |
| MS.gene053176 | MS.gene069689 | -0.812269 | 4.62E-51 | -1.69E-46 |
| MS.gene054183 | MS.gene069689 | -0.837037 | 6.58E-57 | -1.69E-46 |
| MS.gene054719 | MS.gene069689 | -0.811066 | 8.43E-51 | -1.69E-46 |
| MS.gene055217 | MS.gene069689 | -0.804426 | 2.17E-49 | -1.69E-46 |
| MS.gene05553 | MS.gene069689 | -0.803001 | 4.29E-49 | -1.69E-46 |
| MS.gene056979 | MS.gene069689 | -0.810398 | 1.18E-50 | -1.69E-46 |
| MS.gene057244 | MS.gene069689 | 0.845606 | 3.66E-59 | -1.69E-46 |
| MS.gene05886 | MS.gene069689 | -0.800478 | 1.41E-48 | -1.69E-46 |
| MS.gene05909 | MS.gene069689 | 0.810988 | 8.76E-51 | -1.69E-46 |
| MS.gene059849 | MS.gene069689 | 0.803884 | 2.82E-49 | -1.69E-46 |
| MS.gene061114 | MS.gene069689 | 0.858592 | 7.41E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069689.t1 | MTR_6g074910 | 98.651 | 593 | 3 | 1 | 1 | 593 | 1 | 588 | 0.0 | 1203 |
| MS.gene069689.t1 | MTR_5g077170 | 77.913 | 575 | 125 | 1 | 21 | 593 | 17 | 591 | 0.0 | 947 |
| MS.gene069689.t1 | MTR_4g053270 | 47.909 | 574 | 293 | 3 | 22 | 593 | 20 | 589 | 0.0 | 564 |
| MS.gene069689.t1 | MTR_8g088730 | 39.410 | 576 | 333 | 6 | 26 | 593 | 22 | 589 | 1.24e-144 | 431 |
| MS.gene069689.t1 | MTR_2g006300 | 40.522 | 575 | 326 | 7 | 26 | 593 | 18 | 583 | 5.43e-144 | 429 |
| MS.gene069689.t1 | MTR_8g016270 | 33.542 | 638 | 361 | 9 | 7 | 593 | 23 | 648 | 7.55e-126 | 385 |
| MS.gene069689.t1 | MTR_1g014080 | 32.248 | 614 | 361 | 9 | 29 | 593 | 30 | 637 | 2.18e-110 | 344 |
| MS.gene069689.t1 | MTR_3g105950 | 32.237 | 608 | 357 | 8 | 35 | 593 | 35 | 636 | 1.71e-109 | 342 |
| MS.gene069689.t1 | MTR_3g082140 | 26.689 | 607 | 369 | 13 | 56 | 593 | 60 | 659 | 3.49e-74 | 249 |
| MS.gene069689.t1 | MTR_5g098730 | 26.515 | 660 | 401 | 16 | 11 | 593 | 13 | 665 | 3.67e-74 | 250 |
| MS.gene069689.t1 | MTR_0204s0010 | 30.110 | 455 | 289 | 9 | 157 | 593 | 5 | 448 | 1.05e-72 | 240 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069689.t1 | AT2G01970 | 87.245 | 588 | 70 | 2 | 7 | 593 | 9 | 592 | 0.0 | 1041 |
| MS.gene069689.t1 | AT1G14670 | 88.091 | 571 | 67 | 1 | 24 | 593 | 22 | 592 | 0.0 | 1008 |
| MS.gene069689.t1 | AT5G37310 | 83.798 | 574 | 92 | 1 | 21 | 593 | 20 | 593 | 0.0 | 979 |
| MS.gene069689.t1 | AT5G37310 | 83.798 | 574 | 92 | 1 | 21 | 593 | 20 | 593 | 0.0 | 979 |
| MS.gene069689.t1 | AT1G08350 | 50.788 | 571 | 275 | 4 | 26 | 593 | 22 | 589 | 0.0 | 616 |
| MS.gene069689.t1 | AT1G08350 | 50.788 | 571 | 275 | 4 | 26 | 593 | 22 | 589 | 0.0 | 616 |
| MS.gene069689.t1 | AT1G08350 | 49.119 | 511 | 254 | 4 | 86 | 593 | 1 | 508 | 0.0 | 531 |
| MS.gene069689.t1 | AT1G08350 | 48.555 | 519 | 252 | 4 | 26 | 541 | 22 | 528 | 0.0 | 529 |
| MS.gene069689.t1 | AT1G10950 | 39.373 | 574 | 334 | 6 | 26 | 593 | 24 | 589 | 8.85e-142 | 424 |
| MS.gene069689.t1 | AT3G13772 | 31.922 | 614 | 359 | 8 | 31 | 593 | 36 | 641 | 6.96e-119 | 366 |
| MS.gene069689.t1 | AT1G55130 | 32.543 | 633 | 364 | 9 | 16 | 593 | 13 | 637 | 8.23e-119 | 366 |
| MS.gene069689.t1 | AT2G24170 | 32.558 | 645 | 375 | 8 | 1 | 593 | 1 | 637 | 1.24e-117 | 363 |
| MS.gene069689.t1 | AT5G10840 | 31.707 | 615 | 364 | 8 | 29 | 593 | 40 | 648 | 7.11e-110 | 343 |
| MS.gene069689.t1 | AT5G25100 | 31.280 | 617 | 366 | 7 | 29 | 593 | 34 | 644 | 1.01e-109 | 343 |
| MS.gene069689.t1 | AT5G25100 | 31.639 | 610 | 359 | 7 | 36 | 593 | 48 | 651 | 5.66e-109 | 341 |
| MS.gene069689.t1 | AT5G35160 | 26.859 | 659 | 401 | 17 | 7 | 593 | 9 | 658 | 2.38e-71 | 242 |
| MS.gene069689.t1 | AT5G35160 | 26.859 | 659 | 401 | 17 | 7 | 593 | 9 | 658 | 2.38e-71 | 242 |
| MS.gene069689.t1 | AT5G35160 | 26.859 | 659 | 401 | 17 | 7 | 593 | 9 | 658 | 2.38e-71 | 242 |
| MS.gene069689.t1 | AT5G35160 | 26.968 | 597 | 358 | 14 | 68 | 593 | 41 | 630 | 1.90e-66 | 228 |
| MS.gene069689.t1 | AT4G12650 | 29.237 | 472 | 308 | 10 | 137 | 593 | 192 | 652 | 1.33e-62 | 218 |
| MS.gene069689.t1 | AT2G24170 | 28.381 | 451 | 264 | 7 | 1 | 399 | 1 | 444 | 1.53e-59 | 205 |
Find 149 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATGATGATTTGCCTATT+TGG | 0.197680 | 6.1:+66860146 | MS.gene069689:CDS |
| ATTATATATTTGCCAGTGTC+TGG | 0.215685 | 6.1:+66861511 | MS.gene069689:CDS |
| TTATGATGATTTGCCTATTT+GGG | 0.236802 | 6.1:+66860147 | MS.gene069689:CDS |
| ACACAGAGTCCTTGTCCTTT+TGG | 0.251570 | 6.1:-66860042 | None:intergenic |
| TTGCCTATTTGGGGTTTCAT+AGG | 0.302131 | 6.1:+66860157 | MS.gene069689:CDS |
| CTTGTATTGGGAGGGATTGC+TGG | 0.316117 | 6.1:+66861342 | MS.gene069689:CDS |
| TACGTCTCCTCTACTTGTAT+TGG | 0.316329 | 6.1:+66861329 | MS.gene069689:CDS |
| GTTATATATGCACTCACTTC+AGG | 0.319264 | 6.1:+66861002 | MS.gene069689:CDS |
| TCCTCCTTTGCCATGGTATC+GGG | 0.329441 | 6.1:+66861425 | MS.gene069689:CDS |
| TTCTTGATGCTTGGAACTGT+TGG | 0.329989 | 6.1:+66862795 | MS.gene069689:CDS |
| TTCCTATGCGGTGGTTCAAC+TGG | 0.342782 | 6.1:+66862660 | MS.gene069689:CDS |
| TACGGTGTTCATATTCATAT+TGG | 0.349084 | 6.1:+66860923 | MS.gene069689:CDS |
| ACGTCTCCTCTACTTGTATT+GGG | 0.350290 | 6.1:+66861330 | MS.gene069689:CDS |
| TGTTATAAAATATATCAAAA+TGG | 0.350719 | 6.1:-66860240 | None:intergenic |
| AACCAACCTGGTATACAAAA+TGG | 0.355606 | 6.1:-66858988 | None:intergenic |
| ACTTGACAAAATCATTCTTA+AGG | 0.370613 | 6.1:-66860522 | None:intergenic |
| GTAACATCCACAAGGGCATT+TGG | 0.374033 | 6.1:-66860298 | None:intergenic |
| GGAGATGAAGAGAGAAGAAA+TGG | 0.385785 | 6.1:-66858506 | None:intergenic |
| AAATGCCTACTCGCACTTGA+TGG | 0.387744 | 6.1:-66862859 | None:intergenic |
| TTGTCGTTATAGTTCTCATA+TGG | 0.395244 | 6.1:+66861298 | MS.gene069689:CDS |
| TTTCATAGGGAAGGTTGATA+AGG | 0.398059 | 6.1:+66860171 | MS.gene069689:CDS |
| AAGAAGGCGAGGATGAATAA+TGG | 0.401524 | 6.1:-66858478 | None:intergenic |
| ATATTCATATTGGCACTTGT+TGG | 0.402301 | 6.1:+66860933 | MS.gene069689:CDS |
| TTCCTCCTTTGCCATGGTAT+CGG | 0.402307 | 6.1:+66861424 | MS.gene069689:CDS |
| TCTGTATTTGCAGCCGCTCT+TGG | 0.402906 | 6.1:+66860757 | MS.gene069689:CDS |
| TGAGGAGACTGCAGAGGATC+AGG | 0.408156 | 6.1:+66860678 | MS.gene069689:CDS |
| TTCCCTATGAAACCCCAAAT+AGG | 0.409018 | 6.1:-66860160 | None:intergenic |
| ACCAGTGGATTTCCAAATGA+TGG | 0.412001 | 6.1:-66860429 | None:intergenic |
| TTTGCAGCCGCTCTTGGATC+TGG | 0.413202 | 6.1:+66860763 | MS.gene069689:CDS |
| GCACTCACTTCAGGAATTGC+TGG | 0.413621 | 6.1:+66861011 | MS.gene069689:CDS |
| GTCAACTGGAAGGAACAAAC+TGG | 0.416389 | 6.1:+66861057 | MS.gene069689:CDS |
| TTTGGTTTCTTCTTGATGCT+TGG | 0.416603 | 6.1:+66862786 | MS.gene069689:CDS |
| GTCCTCGCTACCCCATCATT+TGG | 0.419122 | 6.1:+66860417 | MS.gene069689:CDS |
| TACATGGCCTGCATATGCTT+TGG | 0.422165 | 6.1:+66862768 | MS.gene069689:CDS |
| CACTGGGTGAAGTGTTGAAT+GGG | 0.423169 | 6.1:+66859984 | MS.gene069689:CDS |
| TTATATATTTGCCAGTGTCT+GGG | 0.430768 | 6.1:+66861512 | MS.gene069689:CDS |
| GGATATTTAGTTGTGCGGAC+TGG | 0.447634 | 6.1:-66861393 | None:intergenic |
| GTCACAGTCCTCCTCTTGAC+TGG | 0.456631 | 6.1:+66860472 | MS.gene069689:CDS |
| GAAATAGAGGCCCACAGAAA+AGG | 0.459642 | 6.1:-66861206 | None:intergenic |
| AAGCAAAATGTAAGAAATAG+AGG | 0.470399 | 6.1:-66861219 | None:intergenic |
| CCCATCATTTGGAAATCCAC+TGG | 0.476786 | 6.1:+66860428 | MS.gene069689:CDS |
| GAAAGAGAAGAAAGAAGCAC+TGG | 0.478603 | 6.1:+66859967 | MS.gene069689:CDS |
| ATAGTAGTAATACAGACAAT+AGG | 0.479087 | 6.1:-66862697 | None:intergenic |
| TGCAAATACAGATTTGAACT+TGG | 0.479752 | 6.1:-66860746 | None:intergenic |
| TATGCCCGCTCCGATATGTC+TGG | 0.480652 | 6.1:+66862717 | MS.gene069689:CDS |
| ATAGGGAAGGTTGATAAGGA+AGG | 0.491104 | 6.1:+66860175 | MS.gene069689:CDS |
| TACCTCATTCTATTGTCAAC+TGG | 0.491307 | 6.1:+66861043 | MS.gene069689:CDS |
| AATAGAGCCCCTCGGTTGTA+CGG | 0.492094 | 6.1:-66860966 | None:intergenic |
| TTGCATGAAACCAGACATAT+CGG | 0.492755 | 6.1:-66862727 | None:intergenic |
| TCAGATAAACGTTACAAAGA+AGG | 0.494228 | 6.1:+66858547 | MS.gene069689:CDS |
| AACTCACAGGGTAAACAGTT+GGG | 0.494448 | 6.1:-66860788 | None:intergenic |
| TAACGACAATTGTGCCGAAT+GGG | 0.498949 | 6.1:-66861284 | None:intergenic |
| TTGTATTGGGAGGGATTGCT+GGG | 0.499754 | 6.1:+66861343 | MS.gene069689:CDS |
| AAGTACCTTGGATTATGAAA+AGG | 0.506207 | 6.1:-66858604 | None:intergenic |
| AATTCTGTGGCCCCAGACAC+TGG | 0.506214 | 6.1:-66861523 | None:intergenic |
| TATTTGGGGTTTCATAGGGA+AGG | 0.508176 | 6.1:+66860162 | MS.gene069689:CDS |
| AGGATCAGGAAGAGACTGGC+TGG | 0.510925 | 6.1:+66860692 | MS.gene069689:CDS |
| TTGTCCATCCGCTTCTCAAA+GGG | 0.512090 | 6.1:-66860382 | None:intergenic |
| TGCCTATTTGGGGTTTCATA+GGG | 0.512616 | 6.1:+66860158 | MS.gene069689:CDS |
| AGAAGAAATGGAGAAGAAGA+AGG | 0.512899 | 6.1:-66858494 | None:intergenic |
| GCTACTGCCGCTCTCCCATT+CGG | 0.515377 | 6.1:+66861270 | MS.gene069689:CDS |
| CCTCTCTTCGCTAACAAAGT+TGG | 0.516706 | 6.1:+66858580 | MS.gene069689:CDS |
| CCAGTGGATTTCCAAATGAT+GGG | 0.517728 | 6.1:-66860428 | None:intergenic |
| CAAAATGGATGTGCTTGTAA+AGG | 0.520184 | 6.1:-66860225 | None:intergenic |
| GCAAATACAGATTTGAACTT+GGG | 0.523489 | 6.1:-66860745 | None:intergenic |
| CTCCTCTACTTGTATTGGGA+GGG | 0.524300 | 6.1:+66861334 | MS.gene069689:CDS |
| GGCAAAGGAGGAATCTCCCT+TGG | 0.527338 | 6.1:-66861414 | None:intergenic |
| GACACTTACAAAAGAAGAAG+TGG | 0.527829 | 6.1:+66860078 | MS.gene069689:CDS |
| CATGATCTTCAGCAGCAAGC+TGG | 0.529624 | 6.1:-66861629 | None:intergenic |
| CCCTTGGATATTTAGTTGTG+CGG | 0.531342 | 6.1:-66861398 | None:intergenic |
| AAACTCACAGGGTAAACAGT+TGG | 0.533116 | 6.1:-66860789 | None:intergenic |
| AGTGTTGAATGGGGATAGGT+TGG | 0.533187 | 6.1:+66859994 | MS.gene069689:CDS |
| TATGATGATTTGCCTATTTG+GGG | 0.533815 | 6.1:+66860148 | MS.gene069689:CDS |
| GTTCGGAATTTACTATTGAC+CGG | 0.534508 | 6.1:+66861180 | MS.gene069689:CDS |
| TTATAAGCTCGAGTTCCAAA+AGG | 0.536234 | 6.1:+66860027 | MS.gene069689:CDS |
| TTTCTATACTGTGAAATGGA+AGG | 0.537931 | 6.1:+66860348 | MS.gene069689:CDS |
| ATTCCTCAGATGGCAATGGC+AGG | 0.540197 | 6.1:+66861453 | MS.gene069689:CDS |
| CTTGTCCATCCGCTTCTCAA+AGG | 0.541803 | 6.1:-66860383 | None:intergenic |
| AAATGGAGAAGAAGAAGGCG+AGG | 0.544510 | 6.1:-66858489 | None:intergenic |
| TAGTTGTGCGGACTGGAGCT+TGG | 0.548078 | 6.1:-66861386 | None:intergenic |
| GCACTGGGTGAAGTGTTGAA+TGG | 0.549117 | 6.1:+66859983 | MS.gene069689:CDS |
| AAATGATGGGGTAGCGAGGA+CGG | 0.550197 | 6.1:-66860415 | None:intergenic |
| GCAGAGGATCAGGAAGAGAC+TGG | 0.553267 | 6.1:+66860688 | MS.gene069689:CDS |
| AGGTAGTATCTATAATCACT+AGG | 0.554450 | 6.1:-66860205 | None:intergenic |
| TATATATTTGCCAGTGTCTG+GGG | 0.557505 | 6.1:+66861513 | MS.gene069689:CDS |
| AGGCCCACAGAAAAGGCATC+CGG | 0.561889 | 6.1:-66861199 | None:intergenic |
| GAAGAAACCAAAGCATATGC+AGG | 0.562481 | 6.1:-66862775 | None:intergenic |
| CCCCGATACCATGGCAAAGG+AGG | 0.562801 | 6.1:-66861426 | None:intergenic |
| GAAACCAGACATATCGGAGC+GGG | 0.562807 | 6.1:-66862721 | None:intergenic |
| GGTAGTATCTATAATCACTA+GGG | 0.562961 | 6.1:-66860204 | None:intergenic |
| TAGGGAAGGTTGATAAGGAA+GGG | 0.564428 | 6.1:+66860176 | MS.gene069689:CDS |
| CTGAAGATCATGAATGGTGG+TGG | 0.564533 | 6.1:+66861640 | MS.gene069689:CDS |
| TACAGATCATTCCTATGCGG+TGG | 0.566423 | 6.1:+66862651 | MS.gene069689:intron |
| ATCCCTCCCAATACAAGTAG+AGG | 0.569721 | 6.1:-66861336 | None:intergenic |
| GTGAAGTGTTGAATGGGGAT+AGG | 0.575284 | 6.1:+66859990 | MS.gene069689:CDS |
| TGTTACTGCTTTCATTACTG+TGG | 0.578518 | 6.1:+66861593 | MS.gene069689:CDS |
| AACGGATCCAAATGCCCTTG+TGG | 0.580190 | 6.1:+66860291 | MS.gene069689:CDS |
| TCGGGGAGCAATTCCTCAGA+TGG | 0.580703 | 6.1:+66861443 | MS.gene069689:CDS |
| TTGCTGCTGAAGATCATGAA+TGG | 0.582525 | 6.1:+66861634 | MS.gene069689:CDS |
| TTCCAGTTGACAATAGAATG+AGG | 0.583452 | 6.1:-66861045 | None:intergenic |
| AATCCTGCCATTGCCATCTG+AGG | 0.585284 | 6.1:-66861456 | None:intergenic |
| CCTACTCGCACTTGATGGAT+CGG | 0.585534 | 6.1:-66862854 | None:intergenic |
| ATCTGACGAATCAGATCTGA+CGG | 0.586173 | 6.1:-66858530 | None:intergenic |
| CCAACTTTGTTAGCGAAGAG+AGG | 0.587195 | 6.1:-66858580 | None:intergenic |
| CACTCCCTTTGAGAAGCGGA+TGG | 0.589376 | 6.1:+66860378 | MS.gene069689:CDS |
| GGGAGATTCCTCCTTTGCCA+TGG | 0.590122 | 6.1:+66861418 | MS.gene069689:CDS |
| TCCGCACAACTAAATATCCA+AGG | 0.591816 | 6.1:+66861397 | MS.gene069689:CDS |
| CTAACACTCCCTTTGAGAAG+CGG | 0.594183 | 6.1:+66860374 | MS.gene069689:CDS |
| TCTCCTCTACTTGTATTGGG+AGG | 0.599263 | 6.1:+66861333 | MS.gene069689:CDS |
| ATAACGACAATTGTGCCGAA+TGG | 0.606594 | 6.1:-66861285 | None:intergenic |
| TTGCAAGAAAACCAGTCAAG+AGG | 0.612188 | 6.1:-66860483 | None:intergenic |
| CCTCCTTTGCCATGGTATCG+GGG | 0.612898 | 6.1:+66861426 | MS.gene069689:CDS |
| GCTCCCCGATACCATGGCAA+AGG | 0.619903 | 6.1:-66861429 | None:intergenic |
| TTCCAAATGATGGGGTAGCG+AGG | 0.620376 | 6.1:-66860419 | None:intergenic |
| TCGATGTAAATAGCACTGAA+AGG | 0.620759 | 6.1:-66861483 | None:intergenic |
| AAACAGGTATGCACATGATG+AGG | 0.621763 | 6.1:+66860660 | MS.gene069689:intron |
| CCGATCCATCAAGTGCGAGT+AGG | 0.623339 | 6.1:+66862854 | MS.gene069689:CDS |
| GGAATTGCTCCCCGATACCA+TGG | 0.625145 | 6.1:-66861435 | None:intergenic |
| AATTGATAATCGAAAACCAG+TGG | 0.626537 | 6.1:-66860444 | None:intergenic |
| TCATTCTATTGTCAACTGGA+AGG | 0.630520 | 6.1:+66861047 | MS.gene069689:CDS |
| ACTTGATGGATCGGTATATG+TGG | 0.631167 | 6.1:-66862845 | None:intergenic |
| CAAGAAAACCAGTCAAGAGG+AGG | 0.631428 | 6.1:-66860480 | None:intergenic |
| AGCAATTCCTCAGATGGCAA+TGG | 0.634595 | 6.1:+66861449 | MS.gene069689:CDS |
| AAGATCATGAATGGTGGTGG+AGG | 0.635786 | 6.1:+66861643 | MS.gene069689:CDS |
| TATTGAGATCAATGTGCGAA+CGG | 0.636703 | 6.1:+66860273 | MS.gene069689:CDS |
| ATCCAGTTGAACCACCGCAT+AGG | 0.639943 | 6.1:-66862662 | None:intergenic |
| GTGCAGTGAATAGAGCCCCT+CGG | 0.643541 | 6.1:-66860974 | None:intergenic |
| AATTGTGCCGAATGGGAGAG+CGG | 0.644658 | 6.1:-66861277 | None:intergenic |
| TGCCCTTGTGGATGTTACAG+AGG | 0.650587 | 6.1:+66860303 | MS.gene069689:CDS |
| CTGCTGAAGATCATGAATGG+TGG | 0.659388 | 6.1:+66861637 | MS.gene069689:CDS |
| CCGCACAACTAAATATCCAA+GGG | 0.660490 | 6.1:+66861398 | MS.gene069689:CDS |
| CAGTGGATTTCCAAATGATG+GGG | 0.661541 | 6.1:-66860427 | None:intergenic |
| TGATGGATCGGTATATGTGG+CGG | 0.664035 | 6.1:-66862842 | None:intergenic |
| TGAAACCAGACATATCGGAG+CGG | 0.664795 | 6.1:-66862722 | None:intergenic |
| AAAGGACAAGGACTCTGTGT+CGG | 0.665112 | 6.1:+66860045 | MS.gene069689:CDS |
| TGTCCTCTGTAACATCCACA+AGG | 0.669975 | 6.1:-66860306 | None:intergenic |
| AAAGAGAAGAAAGAAGCACT+GGG | 0.674148 | 6.1:+66859968 | MS.gene069689:CDS |
| GGACAAAGAACAATGCTGCA+CGG | 0.675721 | 6.1:-66862821 | None:intergenic |
| GCTCGAGTTCCAAAAGGACA+AGG | 0.682048 | 6.1:+66860033 | MS.gene069689:CDS |
| TCAACTGGAAGGAACAAACT+GGG | 0.689021 | 6.1:+66861058 | MS.gene069689:CDS |
| CCTTACAGATCATTCCTATG+CGG | 0.691017 | 6.1:+66862648 | MS.gene069689:intron |
| TGTAGATTGTGTAAATTCTG+TGG | 0.694009 | 6.1:-66861536 | None:intergenic |
| ACATGATGAGGAGACTGCAG+AGG | 0.702295 | 6.1:+66860672 | MS.gene069689:CDS |
| GATTGCTGGGAAGAACAGCA+AGG | 0.708765 | 6.1:+66861356 | MS.gene069689:CDS |
| ACTGGCTGGAAATACATCCA+CGG | 0.709634 | 6.1:+66860706 | MS.gene069689:CDS |
| GTCCTCTGTAACATCCACAA+GGG | 0.709898 | 6.1:-66860305 | None:intergenic |
| TGACGAATCAGATCTGACGG+TGG | 0.721782 | 6.1:-66858527 | None:intergenic |
| TTGGGTACCAGATCCAAGAG+CGG | 0.740493 | 6.1:-66860770 | None:intergenic |
| ACTGGGTGAAGTGTTGAATG+GGG | 0.747764 | 6.1:+66859985 | MS.gene069689:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTATAAAATATATCAAAA+TGG | - | chr6.1:66860243-66860262 | None:intergenic | 10.0% |
| !!! | AATGTTTAATTTTTAAATCA+TGG | + | chr6.1:66859181-66859200 | MS.gene069689:intron | 10.0% |
| !!! | ATTTTAACAAAATAATAAAC+TGG | - | chr6.1:66861995-66862014 | None:intergenic | 10.0% |
| !!! | TTTTGATATATTTTATAACA+AGG | + | chr6.1:66860243-66860262 | MS.gene069689:CDS | 10.0% |
| !! | AAAAAAAACACAAATAGAAA+AGG | - | chr6.1:66860554-66860573 | None:intergenic | 15.0% |
| !! | ATTAATGATAAGAAAATCAA+AGG | + | chr6.1:66859402-66859421 | MS.gene069689:intron | 15.0% |
| !!! | AAGTTTTAATTTTTAAATCG+TGG | + | chr6.1:66859052-66859071 | MS.gene069689:intron | 15.0% |
| !!! | ATGCAAATGTTTTAAAATAT+CGG | + | chr6.1:66859441-66859460 | MS.gene069689:intron | 15.0% |
| !!! | ATTTTGAGATATTTTCTTTT+TGG | + | chr6.1:66859906-66859925 | MS.gene069689:intron | 15.0% |
| !!! | TTTCTATTTGTGTTTTTTTT+TGG | + | chr6.1:66860554-66860573 | MS.gene069689:intron | 15.0% |
| !!! | TTTTAAATCATGGTTATTTA+GGG | + | chr6.1:66859191-66859210 | MS.gene069689:intron | 15.0% |
| !!! | TTTTCTTATCATTAATATCA+AGG | - | chr6.1:66859398-66859417 | None:intergenic | 15.0% |
| !!! | TTTTGAGATATTTTCTTTTT+GGG | + | chr6.1:66859907-66859926 | MS.gene069689:intron | 15.0% |
| !!! | TTTTTAAATCATGGTTATTT+AGG | + | chr6.1:66859190-66859209 | MS.gene069689:intron | 15.0% |
| !! | AAACAATAAACCATAGAAAT+TGG | - | chr6.1:66861706-66861725 | None:intergenic | 20.0% |
| !! | AAATCATGATGTTAAAACAT+GGG | + | chr6.1:66859560-66859579 | MS.gene069689:intron | 20.0% |
| !! | AATTAAAGAAAACTCATTTC+AGG | + | chr6.1:66860834-66860853 | MS.gene069689:intron | 20.0% |
| !! | CTTTAATTGAACATATTGAA+TGG | - | chr6.1:66860822-66860841 | None:intergenic | 20.0% |
| !! | TAAGTAGTCAATATGAATTA+TGG | + | chr6.1:66861831-66861850 | MS.gene069689:intron | 20.0% |
| !! | TCAATTCTTAAATCATGTAA+CGG | - | chr6.1:66859506-66859525 | None:intergenic | 20.0% |
| !!! | AAATAACTTGTGAAAACATT+AGG | - | chr6.1:66862279-66862298 | None:intergenic | 20.0% |
| !!! | ACTTATAAATCTATGCATTT+TGG | + | chr6.1:66861086-66861105 | MS.gene069689:intron | 20.0% |
| !!! | ATTCTCTCACATTTTTTAAT+TGG | + | chr6.1:66858719-66858738 | MS.gene069689:intron | 20.0% |
| !!! | ATTTTTAAATCGTGGTTATT+CGG | + | chr6.1:66859060-66859079 | MS.gene069689:intron | 20.0% |
| !!! | GTTTTAAGTTATAGTTATGT+TGG | + | chr6.1:66859084-66859103 | MS.gene069689:intron | 20.0% |
| !!! | TGTTTTTTACAAAGTAAACA+TGG | + | chr6.1:66862253-66862272 | MS.gene069689:intron | 20.0% |
| !!! | TTCTCTCACATTTTTTAATT+GGG | + | chr6.1:66858720-66858739 | MS.gene069689:intron | 20.0% |
| !!! | TTTGAGATATTTTCTTTTTG+GGG | + | chr6.1:66859908-66859927 | MS.gene069689:intron | 20.0% |
| !!! | TTTTGAAGTGAATTATTTGA+TGG | + | chr6.1:66862052-66862071 | MS.gene069689:intron | 20.0% |
| ! | AAATAAAGAAAGAGACAAAG+CGG | - | chr6.1:66859681-66859700 | None:intergenic | 25.0% |
| ! | AAGCAAAATGTAAGAAATAG+AGG | - | chr6.1:66861222-66861241 | None:intergenic | 25.0% |
| ! | AATATGAAATTCTTGCTTAG+GGG | + | chr6.1:66862079-66862098 | MS.gene069689:intron | 25.0% |
| ! | ACTTGACAAAATCATTCTTA+AGG | - | chr6.1:66860525-66860544 | None:intergenic | 25.0% |
| ! | AGAATATGAAATTCTTGCTT+AGG | + | chr6.1:66862077-66862096 | MS.gene069689:intron | 25.0% |
| ! | AGCAAAAGAATAAATAACAG+AGG | - | chr6.1:66860609-66860628 | None:intergenic | 25.0% |
| ! | ATAGTAGTAATACAGACAAT+AGG | - | chr6.1:66862700-66862719 | None:intergenic | 25.0% |
| ! | ATTAGTAATCTTTACTGTGT+TGG | + | chr6.1:66862315-66862334 | MS.gene069689:intron | 25.0% |
| ! | CAAATCATGATGTTAAAACA+TGG | + | chr6.1:66859559-66859578 | MS.gene069689:intron | 25.0% |
| ! | CCAGATATAGAAAACATAAA+TGG | - | chr6.1:66862417-66862436 | None:intergenic | 25.0% |
| ! | CGTAGCTAAATAAAAAAACA+TGG | + | chr6.1:66859727-66859746 | MS.gene069689:intron | 25.0% |
| ! | GAATATGAAATTCTTGCTTA+GGG | + | chr6.1:66862078-66862097 | MS.gene069689:intron | 25.0% |
| ! | TACTAGTAATACCTAACTAA+GGG | - | chr6.1:66861735-66861754 | None:intergenic | 25.0% |
| ! | TTGAATGTAATCAAATGTGT+CGG | + | chr6.1:66858863-66858882 | MS.gene069689:intron | 25.0% |
| !! | AGTTTTTCTATACTGTGAAA+TGG | + | chr6.1:66860344-66860363 | MS.gene069689:CDS | 25.0% |
| !! | ATTATGATGATTTGCCTATT+TGG | + | chr6.1:66860146-66860165 | MS.gene069689:CDS | 25.0% |
| !! | CACAAGTTATTTCAAACTTA+AGG | + | chr6.1:66862287-66862306 | MS.gene069689:intron | 25.0% |
| !! | CCATTTATGTTTTCTATATC+TGG | + | chr6.1:66862414-66862433 | MS.gene069689:intron | 25.0% |
| !! | TCAATATTTAACTTTGGAAG+AGG | + | chr6.1:66859863-66859882 | MS.gene069689:intron | 25.0% |
| !! | TGGTTAGTATCATTTTATTG+CGG | + | chr6.1:66859104-66859123 | MS.gene069689:intron | 25.0% |
| !! | TGTTTTCTATATCTGGATTT+TGG | + | chr6.1:66862421-66862440 | MS.gene069689:intron | 25.0% |
| !! | TTATGATGATTTGCCTATTT+GGG | + | chr6.1:66860147-66860166 | MS.gene069689:CDS | 25.0% |
| !! | TTTCTTTATTTGAGAATGAG+TGG | + | chr6.1:66859690-66859709 | MS.gene069689:intron | 25.0% |
| !! | TTTTTAAATCGTGGTTATTC+GGG | + | chr6.1:66859061-66859080 | MS.gene069689:intron | 25.0% |
| !!! | AGGGTTTTGATTTTAAATCA+TGG | + | chr6.1:66859210-66859229 | MS.gene069689:intron | 25.0% |
| !!! | ATGTTTTAAAATATCGGATC+CGG | + | chr6.1:66859447-66859466 | MS.gene069689:intron | 25.0% |
| !!! | GGGTTTTGATTTTAAATCAT+GGG | + | chr6.1:66859211-66859230 | MS.gene069689:intron | 25.0% |
| AAGTACCTTGGATTATGAAA+AGG | - | chr6.1:66858607-66858626 | None:intergenic | 30.0% | |
| AATAAAGAAAGAGACAAAGC+GGG | - | chr6.1:66859680-66859699 | None:intergenic | 30.0% | |
| ACCACTAATAAGAGAATTGA+AGG | - | chr6.1:66859019-66859038 | None:intergenic | 30.0% | |
| ACTAGTAATACCTAACTAAG+GGG | - | chr6.1:66861734-66861753 | None:intergenic | 30.0% | |
| ACTGATAAGAAAATCAGTTG+TGG | - | chr6.1:66859831-66859850 | None:intergenic | 30.0% | |
| AGGTAGTATCTATAATCACT+AGG | - | chr6.1:66860208-66860227 | None:intergenic | 30.0% | |
| ATATTCATATTGGCACTTGT+TGG | + | chr6.1:66860933-66860952 | MS.gene069689:CDS | 30.0% | |
| ATTATATATTTGCCAGTGTC+TGG | + | chr6.1:66861511-66861530 | MS.gene069689:CDS | 30.0% | |
| CATGTATCCAAAGAAAAATG+AGG | - | chr6.1:66862754-66862773 | None:intergenic | 30.0% | |
| CTTTCATAATGAATCACATG+AGG | + | chr6.1:66862544-66862563 | MS.gene069689:intron | 30.0% | |
| GAAAATCAGTTGTGGTAATT+TGG | - | chr6.1:66859823-66859842 | None:intergenic | 30.0% | |
| GCAAATACAGATTTGAACTT+GGG | - | chr6.1:66860748-66860767 | None:intergenic | 30.0% | |
| GGTAGTATCTATAATCACTA+GGG | - | chr6.1:66860207-66860226 | None:intergenic | 30.0% | |
| GTACTAGTAATACCTAACTA+AGG | - | chr6.1:66861736-66861755 | None:intergenic | 30.0% | |
| TACGGTGTTCATATTCATAT+TGG | + | chr6.1:66860923-66860942 | MS.gene069689:CDS | 30.0% | |
| TCACAAAGTAATCACTAAAC+AGG | - | chr6.1:66861963-66861982 | None:intergenic | 30.0% | |
| TCAGATAAACGTTACAAAGA+AGG | + | chr6.1:66858547-66858566 | MS.gene069689:CDS | 30.0% | |
| TCCTTCAATTCTCTTATTAG+TGG | + | chr6.1:66859015-66859034 | MS.gene069689:intron | 30.0% | |
| TGCAAATACAGATTTGAACT+TGG | - | chr6.1:66860749-66860768 | None:intergenic | 30.0% | |
| TGGTAATTTGGCAAGTAAAT+TGG | - | chr6.1:66859811-66859830 | None:intergenic | 30.0% | |
| TGGTTATATCATCAAAGAGA+TGG | - | chr6.1:66861789-66861808 | None:intergenic | 30.0% | |
| TGTAGATTGTGTAAATTCTG+TGG | - | chr6.1:66861539-66861558 | None:intergenic | 30.0% | |
| TTAGCTAACTAAATGGTATC+CGG | - | chr6.1:66859469-66859488 | None:intergenic | 30.0% | |
| TTATATATTTGCCAGTGTCT+GGG | + | chr6.1:66861512-66861531 | MS.gene069689:CDS | 30.0% | |
| TTGTCGTTATAGTTCTCATA+TGG | + | chr6.1:66861298-66861317 | MS.gene069689:CDS | 30.0% | |
| TTTCTATACTGTGAAATGGA+AGG | + | chr6.1:66860348-66860367 | MS.gene069689:CDS | 30.0% | |
| ! | AATTGATAATCGAAAACCAG+TGG | - | chr6.1:66860447-66860466 | None:intergenic | 30.0% |
| ! | GCTGACTCAATATTTAACTT+TGG | + | chr6.1:66859857-66859876 | MS.gene069689:intron | 30.0% |
| ! | GGTTAGTATCATTTTATTGC+GGG | + | chr6.1:66859105-66859124 | MS.gene069689:intron | 30.0% |
| ! | TATGATGATTTGCCTATTTG+GGG | + | chr6.1:66860148-66860167 | MS.gene069689:CDS | 30.0% |
| ! | TTTATGCATTTTGTGCAGTA+CGG | + | chr6.1:66860905-66860924 | MS.gene069689:intron | 30.0% |
| ! | TTTTAAATCGTGGTTATTCG+GGG | + | chr6.1:66859062-66859081 | MS.gene069689:intron | 30.0% |
| !! | ATGCAAACCTCATTTTTCTT+TGG | + | chr6.1:66862744-66862763 | MS.gene069689:CDS | 30.0% |
| !! | ATGTTGCTATTGTTTTGTTG+CGG | + | chr6.1:66859235-66859254 | MS.gene069689:intron | 30.0% |
| !! | CTCATTTTTCTTTGGATACA+TGG | + | chr6.1:66862752-66862771 | MS.gene069689:CDS | 30.0% |
| !! | TGGAAAGTGTTATATGAAAG+AGG | - | chr6.1:66861874-66861893 | None:intergenic | 30.0% |
| AACCAACCTGGTATACAAAA+TGG | - | chr6.1:66858991-66859010 | None:intergenic | 35.0% | |
| ACCTGTTTAGAAGTCAAACA+AGG | - | chr6.1:66860648-66860667 | None:intergenic | 35.0% | |
| ACGACTCTAACTAATGAACA+AGG | + | chr6.1:66862368-66862387 | MS.gene069689:intron | 35.0% | |
| AGAAGAAATGGAGAAGAAGA+AGG | - | chr6.1:66858497-66858516 | None:intergenic | 35.0% | |
| ATAAAGAAAGAGACAAAGCG+GGG | - | chr6.1:66859679-66859698 | None:intergenic | 35.0% | |
| ATGCATACAATTGTTCCTTC+AGG | + | chr6.1:66862161-66862180 | MS.gene069689:intron | 35.0% | |
| CAAAATGGATGTGCTTGTAA+AGG | - | chr6.1:66860228-66860247 | None:intergenic | 35.0% | |
| CGACTCTAACTAATGAACAA+GGG | + | chr6.1:66862369-66862388 | MS.gene069689:intron | 35.0% | |
| CGGAAAATTGCGGTTAAATA+TGG | + | chr6.1:66859255-66859274 | MS.gene069689:intron | 35.0% | |
| CGTATTCCAACTTCACATAA+TGG | + | chr6.1:66859532-66859551 | MS.gene069689:intron | 35.0% | |
| CTTTCTTGCACCAATTTCTA+TGG | + | chr6.1:66861693-66861712 | MS.gene069689:intron | 35.0% | |
| GACACTTACAAAAGAAGAAG+TGG | + | chr6.1:66860078-66860097 | MS.gene069689:CDS | 35.0% | |
| GCAGGATTTAGCTAACTAAA+TGG | - | chr6.1:66859476-66859495 | None:intergenic | 35.0% | |
| GTTATATATGCACTCACTTC+AGG | + | chr6.1:66861002-66861021 | MS.gene069689:CDS | 35.0% | |
| GTTCGGAATTTACTATTGAC+CGG | + | chr6.1:66861180-66861199 | MS.gene069689:CDS | 35.0% | |
| TACCTCATTCTATTGTCAAC+TGG | + | chr6.1:66861043-66861062 | MS.gene069689:CDS | 35.0% | |
| TATATATTTGCCAGTGTCTG+GGG | + | chr6.1:66861513-66861532 | MS.gene069689:CDS | 35.0% | |
| TATTGAGATCAATGTGCGAA+CGG | + | chr6.1:66860273-66860292 | MS.gene069689:CDS | 35.0% | |
| TCATTCTATTGTCAACTGGA+AGG | + | chr6.1:66861047-66861066 | MS.gene069689:CDS | 35.0% | |
| TGAAGTCCATTATGTGAAGT+TGG | - | chr6.1:66859541-66859560 | None:intergenic | 35.0% | |
| TGATCTTGAACATCACATCA+AGG | - | chr6.1:66859348-66859367 | None:intergenic | 35.0% | |
| TGTTACTGCTTTCATTACTG+TGG | + | chr6.1:66861593-66861612 | MS.gene069689:CDS | 35.0% | |
| TGTTTATAGTCCCCTTAGTT+AGG | + | chr6.1:66861721-66861740 | MS.gene069689:intron | 35.0% | |
| TTAGCTACGTATTAGCATAG+TGG | - | chr6.1:66859716-66859735 | None:intergenic | 35.0% | |
| TTATAAGCTCGAGTTCCAAA+AGG | + | chr6.1:66860027-66860046 | MS.gene069689:CDS | 35.0% | |
| TTCCAGTTGACAATAGAATG+AGG | - | chr6.1:66861048-66861067 | None:intergenic | 35.0% | |
| TTGAAGGAAAAAAACCAACC+TGG | - | chr6.1:66859003-66859022 | None:intergenic | 35.0% | |
| TTGCATGAAACCAGACATAT+CGG | - | chr6.1:66862730-66862749 | None:intergenic | 35.0% | |
| ! | AAGAAGAAGTGGCGAATTTT+CGG | + | chr6.1:66860089-66860108 | MS.gene069689:CDS | 35.0% |
| ! | CATTTTATTGCGGGAAATTG+CGG | + | chr6.1:66859114-66859133 | MS.gene069689:intron | 35.0% |
| ! | GATATTTTATGTGGAATCCC+GGG | + | chr6.1:66859627-66859646 | MS.gene069689:intron | 35.0% |
| ! | GGATATTTTATGTGGAATCC+CGG | + | chr6.1:66859626-66859645 | MS.gene069689:intron | 35.0% |
| ! | GTAAGGAAATAAGAGCACAA+AGG | - | chr6.1:66862634-66862653 | None:intergenic | 35.0% |
| ! | TATTTTATCCGTACAACCGA+GGG | + | chr6.1:66860958-66860977 | MS.gene069689:CDS | 35.0% |
| ! | TCATCAGAACTCATTTTCAG+TGG | - | chr6.1:66861894-66861913 | None:intergenic | 35.0% |
| ! | TCCTTGTTTGACTTCTAAAC+AGG | + | chr6.1:66860644-66860663 | MS.gene069689:intron | 35.0% |
| ! | TCGATGTAAATAGCACTGAA+AGG | - | chr6.1:66861486-66861505 | None:intergenic | 35.0% |
| ! | TGATTTTCAGTGAGACGTAT+CGG | + | chr6.1:66858953-66858972 | MS.gene069689:intron | 35.0% |
| ! | TTGGTCCTTTTCATAATCCA+AGG | + | chr6.1:66858599-66858618 | MS.gene069689:CDS | 35.0% |
| ! | TTTGGTTTCTTCTTGATGCT+TGG | + | chr6.1:66862786-66862805 | MS.gene069689:CDS | 35.0% |
| !! | AAAGAGAAGAAAGAAGCACT+GGG | + | chr6.1:66859968-66859987 | MS.gene069689:CDS | 35.0% |
| !! | CAATTAAACTCAAAGCATCG+TGG | - | chr6.1:66862587-66862606 | None:intergenic | 35.0% |
| !! | TATGCATTTTGGTCCAGTAT+CGG | + | chr6.1:66861097-66861116 | MS.gene069689:intron | 35.0% |
| !! | TGTTTTGTTGCGGAAAATTG+CGG | + | chr6.1:66859245-66859264 | MS.gene069689:intron | 35.0% |
| !! | TTTCATAGGGAAGGTTGATA+AGG | + | chr6.1:66860171-66860190 | MS.gene069689:CDS | 35.0% |
| !!! | TTTTGGAACTCGAGCTTATA+AGG | - | chr6.1:66860028-66860047 | None:intergenic | 35.0% |
| AAACAGGTATGCACATGATG+AGG | + | chr6.1:66860660-66860679 | MS.gene069689:intron | 40.0% | |
| AAACTCACAGGGTAAACAGT+TGG | - | chr6.1:66860792-66860811 | None:intergenic | 40.0% | |
| AACTCACAGGGTAAACAGTT+GGG | - | chr6.1:66860791-66860810 | None:intergenic | 40.0% | |
| AAGAAGGCGAGGATGAATAA+TGG | - | chr6.1:66858481-66858500 | None:intergenic | 40.0% | |
| AATAGACTCTCGAATCCTGA+AGG | - | chr6.1:66862179-66862198 | None:intergenic | 40.0% | |
| ACGTCTCCTCTACTTGTATT+GGG | + | chr6.1:66861330-66861349 | MS.gene069689:CDS | 40.0% | |
| AGCACAAAGGTTAAATGTGC+AGG | - | chr6.1:66862621-66862640 | None:intergenic | 40.0% | |
| ATAACGACAATTGTGCCGAA+TGG | - | chr6.1:66861288-66861307 | None:intergenic | 40.0% | |
| ATCTGACGAATCAGATCTGA+CGG | - | chr6.1:66858533-66858552 | None:intergenic | 40.0% | |
| CATGCAAATCTAACCGATAC+TGG | - | chr6.1:66861113-66861132 | None:intergenic | 40.0% | |
| CCAACATCGATCAACTACAT+TGG | - | chr6.1:66861809-66861828 | None:intergenic | 40.0% | |
| CCAATGTAGTTGATCGATGT+TGG | + | chr6.1:66861806-66861825 | MS.gene069689:intron | 40.0% | |
| CCCTTGGATATTTAGTTGTG+CGG | - | chr6.1:66861401-66861420 | None:intergenic | 40.0% | |
| CCGCACAACTAAATATCCAA+GGG | + | chr6.1:66861398-66861417 | MS.gene069689:CDS | 40.0% | |
| CCTTACAGATCATTCCTATG+CGG | + | chr6.1:66862648-66862667 | MS.gene069689:intron | 40.0% | |
| CTAGACCATCCAATCTTGAT+CGG | - | chr6.1:66859758-66859777 | None:intergenic | 40.0% | |
| CTTTGTCCGTTTATCATGAC+AGG | + | chr6.1:66861158-66861177 | MS.gene069689:intron | 40.0% | |
| GAAACCTAAAAACATCACCG+TGG | - | chr6.1:66860726-66860745 | None:intergenic | 40.0% | |
| GAAGAAACCAAAGCATATGC+AGG | - | chr6.1:66862778-66862797 | None:intergenic | 40.0% | |
| GAGATCAGTTCACTGCTAAA+TGG | - | chr6.1:66861758-66861777 | None:intergenic | 40.0% | |
| GGAGATGAAGAGAGAAGAAA+TGG | - | chr6.1:66858509-66858528 | None:intergenic | 40.0% | |
| GGGAAACATTCTTGCTTTCA+TGG | + | chr6.1:66862389-66862408 | MS.gene069689:intron | 40.0% | |
| GGGAAATTGCGGTTAAATAC+AGG | + | chr6.1:66859125-66859144 | MS.gene069689:intron | 40.0% | |
| TAAAGAAAGAGACAAAGCGG+GGG | - | chr6.1:66859678-66859697 | None:intergenic | 40.0% | |
| TAACGACAATTGTGCCGAAT+GGG | - | chr6.1:66861287-66861306 | None:intergenic | 40.0% | |
| TACGTCTCCTCTACTTGTAT+TGG | + | chr6.1:66861329-66861348 | MS.gene069689:CDS | 40.0% | |
| TCAACTGGAAGGAACAAACT+GGG | + | chr6.1:66861058-66861077 | MS.gene069689:CDS | 40.0% | |
| TCATGTAACGGTGTAAATGC+AGG | - | chr6.1:66859494-66859513 | None:intergenic | 40.0% | |
| TCCGAACCTGTCATGATAAA+CGG | - | chr6.1:66861167-66861186 | None:intergenic | 40.0% | |
| TCCGCACAACTAAATATCCA+AGG | + | chr6.1:66861397-66861416 | MS.gene069689:CDS | 40.0% | |
| TCCGTTTATCATGACAGGTT+CGG | + | chr6.1:66861163-66861182 | MS.gene069689:intron | 40.0% | |
| TGCTGATGCAATTGTAGTTG+TGG | + | chr6.1:66859282-66859301 | MS.gene069689:intron | 40.0% | |
| TTCCCTATGAAACCCCAAAT+AGG | - | chr6.1:66860163-66860182 | None:intergenic | 40.0% | |
| TTCTTGATGCTTGGAACTGT+TGG | + | chr6.1:66862795-66862814 | MS.gene069689:CDS | 40.0% | |
| TTGCAAGAAAACCAGTCAAG+AGG | - | chr6.1:66860486-66860505 | None:intergenic | 40.0% | |
| TTGCTGCTGAAGATCATGAA+TGG | + | chr6.1:66861634-66861653 | MS.gene069689:CDS | 40.0% | |
| TTGTAGTTGTGGAGACATCA+TGG | + | chr6.1:66859293-66859312 | MS.gene069689:intron | 40.0% | |
| TTTACCCTGTGAGTTTCTTC+TGG | + | chr6.1:66860796-66860815 | MS.gene069689:intron | 40.0% | |
| ! | ACATCCACGGTGATGTTTTT+AGG | + | chr6.1:66860719-66860738 | MS.gene069689:CDS | 40.0% |
| ! | ACCAGTGGATTTCCAAATGA+TGG | - | chr6.1:66860432-66860451 | None:intergenic | 40.0% |
| ! | ACTTGATGGATCGGTATATG+TGG | - | chr6.1:66862848-66862867 | None:intergenic | 40.0% |
| ! | ATTTTATCCGTACAACCGAG+GGG | + | chr6.1:66860959-66860978 | MS.gene069689:CDS | 40.0% |
| ! | CAGTGGATTTCCAAATGATG+GGG | - | chr6.1:66860430-66860449 | None:intergenic | 40.0% |
| ! | CCAGTGGATTTCCAAATGAT+GGG | - | chr6.1:66860431-66860450 | None:intergenic | 40.0% |
| ! | GAAAGAGAAGAAAGAAGCAC+TGG | + | chr6.1:66859967-66859986 | MS.gene069689:CDS | 40.0% |
| ! | GGCTGTGAGGATATTTTATG+TGG | + | chr6.1:66859618-66859637 | MS.gene069689:intron | 40.0% |
| ! | GTATTTTATCCGTACAACCG+AGG | + | chr6.1:66860957-66860976 | MS.gene069689:CDS | 40.0% |
| ! | TATTTGGGGTTTCATAGGGA+AGG | + | chr6.1:66860162-66860181 | MS.gene069689:CDS | 40.0% |
| ! | TGCCTATTTGGGGTTTCATA+GGG | + | chr6.1:66860158-66860177 | MS.gene069689:CDS | 40.0% |
| ! | TTGCCTATTTGGGGTTTCAT+AGG | + | chr6.1:66860157-66860176 | MS.gene069689:CDS | 40.0% |
| ! | TTTGGCAAGTAAATTGGCTC+CGG | - | chr6.1:66859805-66859824 | None:intergenic | 40.0% |
| !! | ATAGGGAAGGTTGATAAGGA+AGG | + | chr6.1:66860175-66860194 | MS.gene069689:CDS | 40.0% |
| !! | TAGGGAAGGTTGATAAGGAA+GGG | + | chr6.1:66860176-66860195 | MS.gene069689:CDS | 40.0% |
| !!! | GATCTGCCATTTTGTATACC+AGG | + | chr6.1:66858982-66859001 | MS.gene069689:CDS | 40.0% |
| !!! | TGCCATTTTGTATACCAGGT+TGG | + | chr6.1:66858986-66859005 | MS.gene069689:intron | 40.0% |
| AAAGAAAGAGACAAAGCGGG+GGG | - | chr6.1:66859677-66859696 | None:intergenic | 45.0% | |
| AAAGGACAAGGACTCTGTGT+CGG | + | chr6.1:66860045-66860064 | MS.gene069689:CDS | 45.0% | |
| AAATGGAGAAGAAGAAGGCG+AGG | - | chr6.1:66858492-66858511 | None:intergenic | 45.0% | |
| AATGGCCAGAAGAAACTCAC+AGG | - | chr6.1:66860804-66860823 | None:intergenic | 45.0% | |
| ACCATCCAATCTTGATCGGA+TGG | - | chr6.1:66859754-66859773 | None:intergenic | 45.0% | |
| ACCATCCGATCAAGATTGGA+TGG | + | chr6.1:66859750-66859769 | MS.gene069689:intron | 45.0% | |
| ACTGGCTGGAAATACATCCA+CGG | + | chr6.1:66860706-66860725 | MS.gene069689:CDS | 45.0% | |
| ACTGTTGCATCCTAGTGGTT+TGG | + | chr6.1:66859597-66859616 | MS.gene069689:intron | 45.0% | |
| AGCAATTCCTCAGATGGCAA+TGG | + | chr6.1:66861449-66861468 | MS.gene069689:CDS | 45.0% | |
| ATCCCTCCCAATACAAGTAG+AGG | - | chr6.1:66861339-66861358 | None:intergenic | 45.0% | |
| ATGGACCATCCGATCAAGAT+TGG | + | chr6.1:66859746-66859765 | MS.gene069689:intron | 45.0% | |
| ATGGCCAGAAGAAACTCACA+GGG | - | chr6.1:66860803-66860822 | None:intergenic | 45.0% | |
| CAAGAAAACCAGTCAAGAGG+AGG | - | chr6.1:66860483-66860502 | None:intergenic | 45.0% | |
| CAGATCCAGCACGTGAATAA+CGG | - | chr6.1:66858637-66858656 | None:intergenic | 45.0% | |
| CCAACTTTGTTAGCGAAGAG+AGG | - | chr6.1:66858583-66858602 | None:intergenic | 45.0% | |
| CCCATCATTTGGAAATCCAC+TGG | + | chr6.1:66860428-66860447 | MS.gene069689:CDS | 45.0% | |
| CCGCATAGGAATGATCTGTA+AGG | - | chr6.1:66862651-66862670 | None:intergenic | 45.0% | |
| CCTCTCTTCGCTAACAAAGT+TGG | + | chr6.1:66858580-66858599 | MS.gene069689:CDS | 45.0% | |
| CTCCTCTACTTGTATTGGGA+GGG | + | chr6.1:66861334-66861353 | MS.gene069689:CDS | 45.0% | |
| CTGAAGATCATGAATGGTGG+TGG | + | chr6.1:66861640-66861659 | MS.gene069689:CDS | 45.0% | |
| CTGCTGAAGATCATGAATGG+TGG | + | chr6.1:66861637-66861656 | MS.gene069689:CDS | 45.0% | |
| GAAATAGAGGCCCACAGAAA+AGG | - | chr6.1:66861209-66861228 | None:intergenic | 45.0% | |
| GCTTAGGGGTGATGCATTTA+TGG | + | chr6.1:66862093-66862112 | MS.gene069689:intron | 45.0% | |
| GGACAAAGAACAATGCTGCA+CGG | - | chr6.1:66862824-66862843 | None:intergenic | 45.0% | |
| GGATATTTAGTTGTGCGGAC+TGG | - | chr6.1:66861396-66861415 | None:intergenic | 45.0% | |
| GTCAACTGGAAGGAACAAAC+TGG | + | chr6.1:66861057-66861076 | MS.gene069689:CDS | 45.0% | |
| GTCCTCTGTAACATCCACAA+GGG | - | chr6.1:66860308-66860327 | None:intergenic | 45.0% | |
| TACAGATCATTCCTATGCGG+TGG | + | chr6.1:66862651-66862670 | MS.gene069689:intron | 45.0% | |
| TACATGGCCTGCATATGCTT+TGG | + | chr6.1:66862768-66862787 | MS.gene069689:CDS | 45.0% | |
| TCTCCTCTACTTGTATTGGG+AGG | + | chr6.1:66861333-66861352 | MS.gene069689:CDS | 45.0% | |
| TGAAACCAGACATATCGGAG+CGG | - | chr6.1:66862725-66862744 | None:intergenic | 45.0% | |
| TGTCCTCTGTAACATCCACA+AGG | - | chr6.1:66860309-66860328 | None:intergenic | 45.0% | |
| TTCCTCCTTTGCCATGGTAT+CGG | + | chr6.1:66861424-66861443 | MS.gene069689:CDS | 45.0% | |
| TTGTATTGGGAGGGATTGCT+GGG | + | chr6.1:66861343-66861362 | MS.gene069689:CDS | 45.0% | |
| TTGTCCATCCGCTTCTCAAA+GGG | - | chr6.1:66860385-66860404 | None:intergenic | 45.0% | |
| ! | ACACAGAGTCCTTGTCCTTT+TGG | - | chr6.1:66860045-66860064 | None:intergenic | 45.0% |
| ! | AGAAGTGGCGAATTTTCGGT+CGG | + | chr6.1:66860093-66860112 | MS.gene069689:CDS | 45.0% |
| ! | AGTGTTGAATGGGGATAGGT+TGG | + | chr6.1:66859994-66860013 | MS.gene069689:CDS | 45.0% |
| ! | CTAACACTCCCTTTGAGAAG+CGG | + | chr6.1:66860374-66860393 | MS.gene069689:CDS | 45.0% |
| ! | TGATGGATCGGTATATGTGG+CGG | - | chr6.1:66862845-66862864 | None:intergenic | 45.0% |
| !! | AACGGATCGAAGAAGTACCT+TGG | - | chr6.1:66858619-66858638 | None:intergenic | 45.0% |
| !! | AAGATCATGAATGGTGGTGG+AGG | + | chr6.1:66861643-66861662 | MS.gene069689:CDS | 45.0% |
| !! | ACTGGGTGAAGTGTTGAATG+GGG | + | chr6.1:66859985-66860004 | MS.gene069689:CDS | 45.0% |
| !! | CACTGGGTGAAGTGTTGAAT+GGG | + | chr6.1:66859984-66860003 | MS.gene069689:CDS | 45.0% |
| !! | GTAACATCCACAAGGGCATT+TGG | - | chr6.1:66860301-66860320 | None:intergenic | 45.0% |
| !! | GTGAAGTGTTGAATGGGGAT+AGG | + | chr6.1:66859990-66860009 | MS.gene069689:CDS | 45.0% |
| !! | TCTGGATTTTGGTGCAACCA+AGG | + | chr6.1:66862432-66862451 | MS.gene069689:intron | 45.0% |
| AACGGATCCAAATGCCCTTG+TGG | + | chr6.1:66860291-66860310 | MS.gene069689:CDS | 50.0% | |
| AAGAAAGAGACAAAGCGGGG+GGG | - | chr6.1:66859676-66859695 | None:intergenic | 50.0% | |
| AATAGAGCCCCTCGGTTGTA+CGG | - | chr6.1:66860969-66860988 | None:intergenic | 50.0% | |
| AATCCTGCCATTGCCATCTG+AGG | - | chr6.1:66861459-66861478 | None:intergenic | 50.0% | |
| AATTGTGCCGAATGGGAGAG+CGG | - | chr6.1:66861280-66861299 | None:intergenic | 50.0% | |
| ACACTGACACGACACTGACA+CGG | + | chr6.1:66858816-66858835 | MS.gene069689:intron | 50.0% | |
| ACATGATGAGGAGACTGCAG+AGG | + | chr6.1:66860672-66860691 | MS.gene069689:CDS | 50.0% | |
| ACCACTAGGATGCAACAGTG+AGG | - | chr6.1:66859596-66859615 | None:intergenic | 50.0% | |
| ATCCAGTTGAACCACCGCAT+AGG | - | chr6.1:66862665-66862684 | None:intergenic | 50.0% | |
| ATCCTCACAGCCAAACCACT+AGG | - | chr6.1:66859610-66859629 | None:intergenic | 50.0% | |
| ATTCCTCAGATGGCAATGGC+AGG | + | chr6.1:66861453-66861472 | MS.gene069689:CDS | 50.0% | |
| CAACAACGTGATTGCGTGAC+CGG | + | chr6.1:66859783-66859802 | MS.gene069689:intron | 50.0% | |
| CATGATCTTCAGCAGCAAGC+TGG | - | chr6.1:66861632-66861651 | None:intergenic | 50.0% | |
| CGATCCATCAAGTGCGAGTA+GGG | + | chr6.1:66862855-66862874 | MS.gene069689:CDS | 50.0% | |
| CTTGTATTGGGAGGGATTGC+TGG | + | chr6.1:66861342-66861361 | MS.gene069689:CDS | 50.0% | |
| CTTGTCCATCCGCTTCTCAA+AGG | - | chr6.1:66860386-66860405 | None:intergenic | 50.0% | |
| GAAACCAGACATATCGGAGC+GGG | - | chr6.1:66862724-66862743 | None:intergenic | 50.0% | |
| GATTGCTGGGAAGAACAGCA+AGG | + | chr6.1:66861356-66861375 | MS.gene069689:CDS | 50.0% | |
| GCACTCACTTCAGGAATTGC+TGG | + | chr6.1:66861011-66861030 | MS.gene069689:CDS | 50.0% | |
| GCTCGAGTTCCAAAAGGACA+AGG | + | chr6.1:66860033-66860052 | MS.gene069689:CDS | 50.0% | |
| GTCAGTGTCAGTGTCGTATC+AGG | - | chr6.1:66858798-66858817 | None:intergenic | 50.0% | |
| TCCTCACTGTTGCATCCTAG+TGG | + | chr6.1:66859592-66859611 | MS.gene069689:intron | 50.0% | |
| TCCTCCTTTGCCATGGTATC+GGG | + | chr6.1:66861425-66861444 | MS.gene069689:CDS | 50.0% | |
| TCGATCCGTTATTCACGTGC+TGG | + | chr6.1:66858629-66858648 | MS.gene069689:intron | 50.0% | |
| TCTGTATTTGCAGCCGCTCT+TGG | + | chr6.1:66860757-66860776 | MS.gene069689:CDS | 50.0% | |
| TGACGAATCAGATCTGACGG+TGG | - | chr6.1:66858530-66858549 | None:intergenic | 50.0% | |
| TGCCCTTGTGGATGTTACAG+AGG | + | chr6.1:66860303-66860322 | MS.gene069689:CDS | 50.0% | |
| TTCCTATGCGGTGGTTCAAC+TGG | + | chr6.1:66862660-66862679 | MS.gene069689:CDS | 50.0% | |
| TTGGGTACCAGATCCAAGAG+CGG | - | chr6.1:66860773-66860792 | None:intergenic | 50.0% | |
| ! | AAATGATGGGGTAGCGAGGA+CGG | - | chr6.1:66860418-66860437 | None:intergenic | 50.0% |
| ! | ATCCTAGTGGTTTGGCTGTG+AGG | + | chr6.1:66859605-66859624 | MS.gene069689:intron | 50.0% |
| ! | TGACCGGATGCCTTTTCTGT+GGG | + | chr6.1:66861196-66861215 | MS.gene069689:CDS | 50.0% |
| ! | TTCCAAATGATGGGGTAGCG+AGG | - | chr6.1:66860422-66860441 | None:intergenic | 50.0% |
| ! | TTGACCGGATGCCTTTTCTG+TGG | + | chr6.1:66861195-66861214 | MS.gene069689:CDS | 50.0% |
| ! | TTTTCGGTCGGCTGTTCGTA+AGG | + | chr6.1:66860105-66860124 | MS.gene069689:CDS | 50.0% |
| !! | GCACTGGGTGAAGTGTTGAA+TGG | + | chr6.1:66859983-66860002 | MS.gene069689:CDS | 50.0% |
| AATTCTGTGGCCCCAGACAC+TGG | - | chr6.1:66861526-66861545 | None:intergenic | 55.0% | |
| AGGATCAGGAAGAGACTGGC+TGG | + | chr6.1:66860692-66860711 | MS.gene069689:CDS | 55.0% | |
| CCGATCCATCAAGTGCGAGT+AGG | + | chr6.1:66862854-66862873 | MS.gene069689:CDS | 55.0% | |
| CCTCCTTTGCCATGGTATCG+GGG | + | chr6.1:66861426-66861445 | MS.gene069689:CDS | 55.0% | |
| GCAGAGGATCAGGAAGAGAC+TGG | + | chr6.1:66860688-66860707 | MS.gene069689:CDS | 55.0% | |
| GGAATTGCTCCCCGATACCA+TGG | - | chr6.1:66861438-66861457 | None:intergenic | 55.0% | |
| GGCAAAGGAGGAATCTCCCT+TGG | - | chr6.1:66861417-66861436 | None:intergenic | 55.0% | |
| GGGAGATTCCTCCTTTGCCA+TGG | + | chr6.1:66861418-66861437 | MS.gene069689:CDS | 55.0% | |
| GTCACAGTCCTCCTCTTGAC+TGG | + | chr6.1:66860472-66860491 | MS.gene069689:CDS | 55.0% | |
| GTCCTCGCTACCCCATCATT+TGG | + | chr6.1:66860417-66860436 | MS.gene069689:CDS | 55.0% | |
| GTGCAGTGAATAGAGCCCCT+CGG | - | chr6.1:66860977-66860996 | None:intergenic | 55.0% | |
| TATGCCCGCTCCGATATGTC+TGG | + | chr6.1:66862717-66862736 | MS.gene069689:CDS | 55.0% | |
| TCGGGGAGCAATTCCTCAGA+TGG | + | chr6.1:66861443-66861462 | MS.gene069689:CDS | 55.0% | |
| TGAGGAGACTGCAGAGGATC+AGG | + | chr6.1:66860678-66860697 | MS.gene069689:CDS | 55.0% | |
| TGGTGACTCAGGTTCGAACC+CGG | - | chr6.1:66859648-66859667 | None:intergenic | 55.0% | |
| TTTGCAGCCGCTCTTGGATC+TGG | + | chr6.1:66860763-66860782 | MS.gene069689:CDS | 55.0% | |
| ! | CACTCCCTTTGAGAAGCGGA+TGG | + | chr6.1:66860378-66860397 | MS.gene069689:CDS | 55.0% |
| !! | AGGCCCACAGAAAAGGCATC+CGG | - | chr6.1:66861202-66861221 | None:intergenic | 55.0% |
| !! | TAGTTGTGCGGACTGGAGCT+TGG | - | chr6.1:66861389-66861408 | None:intergenic | 55.0% |
| CCCCGATACCATGGCAAAGG+AGG | - | chr6.1:66861429-66861448 | None:intergenic | 60.0% | |
| GACAAAGCGGGGGGGAAATG+TGG | - | chr6.1:66859668-66859687 | None:intergenic | 60.0% | |
| GCTACTGCCGCTCTCCCATT+CGG | + | chr6.1:66861270-66861289 | MS.gene069689:CDS | 60.0% | |
| GCTCCCCGATACCATGGCAA+AGG | - | chr6.1:66861432-66861451 | None:intergenic | 60.0% | |
| GGGGGGAAATGTGGTGACTC+AGG | - | chr6.1:66859659-66859678 | None:intergenic | 60.0% | |
| GGTGACTCAGGTTCGAACCC+GGG | - | chr6.1:66859647-66859666 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 66858463 | 66862875 | 66858463 | ID=MS.gene069689 |
| chr6.1 | mRNA | 66858463 | 66862875 | 66858463 | ID=MS.gene069689.t1;Parent=MS.gene069689 |
| chr6.1 | exon | 66858463 | 66858620 | 66858463 | ID=MS.gene069689.t1.exon1;Parent=MS.gene069689.t1 |
| chr6.1 | CDS | 66858463 | 66858620 | 66858463 | ID=cds.MS.gene069689.t1;Parent=MS.gene069689.t1 |
| chr6.1 | exon | 66858963 | 66859003 | 66858963 | ID=MS.gene069689.t1.exon2;Parent=MS.gene069689.t1 |
| chr6.1 | CDS | 66858963 | 66859003 | 66858963 | ID=cds.MS.gene069689.t1;Parent=MS.gene069689.t1 |
| chr6.1 | exon | 66859960 | 66860542 | 66859960 | ID=MS.gene069689.t1.exon3;Parent=MS.gene069689.t1 |
| chr6.1 | CDS | 66859960 | 66860542 | 66859960 | ID=cds.MS.gene069689.t1;Parent=MS.gene069689.t1 |
| chr6.1 | exon | 66860666 | 66860803 | 66860666 | ID=MS.gene069689.t1.exon4;Parent=MS.gene069689.t1 |
| chr6.1 | CDS | 66860666 | 66860803 | 66860666 | ID=cds.MS.gene069689.t1;Parent=MS.gene069689.t1 |
| chr6.1 | exon | 66860923 | 66861079 | 66860923 | ID=MS.gene069689.t1.exon5;Parent=MS.gene069689.t1 |
| chr6.1 | CDS | 66860923 | 66861079 | 66860923 | ID=cds.MS.gene069689.t1;Parent=MS.gene069689.t1 |
| chr6.1 | exon | 66861180 | 66861664 | 66861180 | ID=MS.gene069689.t1.exon6;Parent=MS.gene069689.t1 |
| chr6.1 | CDS | 66861180 | 66861664 | 66861180 | ID=cds.MS.gene069689.t1;Parent=MS.gene069689.t1 |
| chr6.1 | exon | 66862656 | 66862875 | 66862656 | ID=MS.gene069689.t1.exon7;Parent=MS.gene069689.t1 |
| chr6.1 | CDS | 66862656 | 66862875 | 66862656 | ID=cds.MS.gene069689.t1;Parent=MS.gene069689.t1 |
| Gene Sequence |
| Protein sequence |
