Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069940.t1 | RDY11737.1 | 72 | 1163 | 181 | 5 | 1 | 1029 | 1 | 1152 | 0.00E+00 | 1664.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069940.t1 | F4JJJ3 | 67.7 | 526 | 163 | 3 | 510 | 1029 | 31 | 555 | 2.5e-211 | 737.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069940.t1 | A0A445E0D3 | 75.8 | 1066 | 213 | 4 | 1 | 1024 | 1 | 1063 | 0.0e+00 | 1657.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene048610 | MS.gene069940 | PPI |
| MS.gene02306 | MS.gene069940 | PPI |
| MS.gene052562 | MS.gene069940 | PPI |
| MS.gene069940 | MS.gene066720 | PPI |
| MS.gene009833 | MS.gene069940 | PPI |
| MS.gene069940 | MS.gene03971 | PPI |
| MS.gene32211 | MS.gene069940 | PPI |
| MS.gene069940 | MS.gene002362 | PPI |
| MS.gene048480 | MS.gene069940 | PPI |
| MS.gene50180 | MS.gene069940 | PPI |
| MS.gene01745 | MS.gene069940 | PPI |
| MS.gene069940 | MS.gene57021 | PPI |
| MS.gene01336 | MS.gene069940 | PPI |
| MS.gene069940 | MS.gene53986 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069940.t1 | MTR_4g045993 | 97.835 | 508 | 11 | 0 | 517 | 1024 | 32 | 539 | 0.0 | 1040 |
| MS.gene069940.t1 | MTR_4g045993 | 56.098 | 533 | 219 | 5 | 1 | 528 | 1 | 523 | 0.0 | 610 |
| MS.gene069940.t1 | MTR_4g045997 | 93.409 | 531 | 32 | 1 | 1 | 528 | 1 | 531 | 0.0 | 1024 |
| MS.gene069940.t1 | MTR_4g045997 | 60.421 | 523 | 203 | 3 | 510 | 1029 | 31 | 552 | 0.0 | 669 |
| MS.gene069940.t1 | MTR_4g045997 | 93.409 | 531 | 32 | 1 | 1 | 528 | 1 | 531 | 0.0 | 1024 |
| MS.gene069940.t1 | MTR_4g045997 | 60.577 | 520 | 201 | 3 | 510 | 1026 | 31 | 549 | 0.0 | 667 |
| MS.gene069940.t1 | MTR_4g091240 | 68.190 | 525 | 159 | 4 | 510 | 1029 | 32 | 553 | 0.0 | 749 |
| MS.gene069940.t1 | MTR_4g091240 | 57.519 | 532 | 212 | 6 | 6 | 528 | 6 | 532 | 0.0 | 626 |
| MS.gene069940.t1 | MTR_2g011730 | 67.164 | 536 | 159 | 3 | 498 | 1029 | 31 | 553 | 0.0 | 747 |
| MS.gene069940.t1 | MTR_2g011730 | 61.673 | 514 | 182 | 7 | 24 | 528 | 25 | 532 | 0.0 | 640 |
| MS.gene069940.t1 | MTR_4g091240 | 69.195 | 435 | 130 | 2 | 599 | 1029 | 15 | 449 | 0.0 | 634 |
| MS.gene069940.t1 | MTR_4g091240 | 58.394 | 411 | 163 | 4 | 126 | 528 | 18 | 428 | 2.60e-167 | 501 |
| MS.gene069940.t1 | MTR_4g090580 | 38.420 | 367 | 202 | 10 | 49 | 406 | 98 | 449 | 6.79e-65 | 229 |
| MS.gene069940.t1 | MTR_4g090580 | 35.422 | 367 | 199 | 10 | 529 | 873 | 105 | 455 | 2.83e-62 | 222 |
| MS.gene069940.t1 | MTR_5g071250 | 42.236 | 322 | 171 | 7 | 56 | 372 | 64 | 375 | 1.51e-63 | 222 |
| MS.gene069940.t1 | MTR_5g071250 | 40.179 | 336 | 179 | 8 | 523 | 849 | 53 | 375 | 1.53e-59 | 211 |
| MS.gene069940.t1 | MTR_5g071250 | 42.236 | 322 | 171 | 7 | 56 | 372 | 64 | 375 | 5.61e-63 | 223 |
| MS.gene069940.t1 | MTR_5g071250 | 40.179 | 336 | 179 | 8 | 523 | 849 | 53 | 375 | 1.13e-58 | 211 |
| MS.gene069940.t1 | MTR_3g464380 | 40.683 | 322 | 176 | 7 | 56 | 372 | 67 | 378 | 1.08e-60 | 216 |
| MS.gene069940.t1 | MTR_3g464380 | 36.224 | 392 | 222 | 11 | 497 | 876 | 33 | 408 | 3.10e-58 | 209 |
| MS.gene069940.t1 | MTR_0931s0010 | 29.503 | 322 | 205 | 9 | 55 | 374 | 234 | 535 | 7.38e-29 | 125 |
| MS.gene069940.t1 | MTR_0931s0010 | 30.435 | 322 | 201 | 8 | 532 | 851 | 235 | 535 | 5.32e-27 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069940.t1 | AT4G21490 | 68.061 | 526 | 161 | 4 | 510 | 1029 | 31 | 555 | 0.0 | 734 |
| MS.gene069940.t1 | AT4G21490 | 58.271 | 532 | 212 | 5 | 5 | 528 | 5 | 534 | 0.0 | 608 |
| MS.gene069940.t1 | AT4G21490 | 68.061 | 526 | 160 | 5 | 510 | 1029 | 31 | 554 | 0.0 | 730 |
| MS.gene069940.t1 | AT4G21490 | 58.271 | 532 | 211 | 6 | 5 | 528 | 5 | 533 | 0.0 | 604 |
| MS.gene069940.t1 | AT4G05020 | 67.675 | 529 | 160 | 4 | 510 | 1029 | 31 | 557 | 0.0 | 728 |
| MS.gene069940.t1 | AT4G05020 | 57.383 | 535 | 214 | 7 | 5 | 528 | 5 | 536 | 0.0 | 597 |
| MS.gene069940.t1 | AT2G20800 | 66.540 | 526 | 164 | 4 | 510 | 1026 | 32 | 554 | 0.0 | 714 |
| MS.gene069940.t1 | AT2G20800 | 54.917 | 539 | 229 | 6 | 1 | 528 | 1 | 536 | 0.0 | 571 |
| MS.gene069940.t1 | AT4G05020 | 63.251 | 566 | 160 | 5 | 510 | 1029 | 31 | 594 | 0.0 | 708 |
| MS.gene069940.t1 | AT4G05020 | 58.869 | 513 | 200 | 6 | 5 | 509 | 5 | 514 | 0.0 | 595 |
| MS.gene069940.t1 | AT4G28220 | 70.575 | 452 | 132 | 1 | 59 | 509 | 52 | 503 | 0.0 | 677 |
| MS.gene069940.t1 | AT4G28220 | 59.454 | 476 | 192 | 1 | 513 | 988 | 31 | 505 | 0.0 | 595 |
| MS.gene069940.t1 | AT4G28220 | 68.354 | 474 | 146 | 2 | 59 | 528 | 52 | 525 | 0.0 | 676 |
| MS.gene069940.t1 | AT4G28220 | 60.077 | 521 | 207 | 1 | 513 | 1033 | 31 | 550 | 0.0 | 665 |
| MS.gene069940.t1 | AT2G29990 | 38.786 | 379 | 209 | 10 | 3 | 372 | 18 | 382 | 3.64e-62 | 221 |
| MS.gene069940.t1 | AT2G29990 | 36.957 | 368 | 208 | 9 | 520 | 877 | 57 | 410 | 3.88e-55 | 201 |
| MS.gene069940.t1 | AT1G07180 | 40.173 | 346 | 185 | 9 | 34 | 372 | 54 | 384 | 5.27e-59 | 212 |
| MS.gene069940.t1 | AT1G07180 | 36.517 | 356 | 204 | 8 | 529 | 877 | 72 | 412 | 4.96e-54 | 197 |
| MS.gene069940.t1 | AT5G08740 | 25.600 | 375 | 223 | 16 | 523 | 868 | 73 | 420 | 4.02e-12 | 70.5 |
Find 225 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCACCACTTCCTCTTTCTT+TGG | 0.150157 | 4.1:+53554963 | None:intergenic |
| TATCTTGACTTTATCTTTAA+TGG | 0.151541 | 4.1:+53561377 | None:intergenic |
| GAAATGGAGAAATCAAATTT+TGG | 0.179733 | 4.1:-53562066 | MS.gene069940:CDS |
| TTTCTACTCTTCCAGTTATA+AGG | 0.181494 | 4.1:-53560891 | MS.gene069940:CDS |
| AGCACTACCACTTTCTTTCT+TGG | 0.213188 | 4.1:+53556820 | None:intergenic |
| TTCATAAAATCGAGTATTTC+AGG | 0.240335 | 4.1:+53554886 | None:intergenic |
| AGATGGAATTGATGTGAAAT+TGG | 0.251162 | 4.1:-53555025 | MS.gene069940:CDS |
| TTCTCTGGACTATGACTTCT+TGG | 0.252451 | 4.1:-53561957 | MS.gene069940:CDS |
| ACAAGTGACACTCGGTAATA+AGG | 0.258096 | 4.1:+53562544 | None:intergenic |
| TGGGGAAGGCGATTCGTATT+TGG | 0.259196 | 4.1:-53552917 | MS.gene069940:CDS |
| CAGAAGGCCCTCTAAGGTTT+AGG | 0.262715 | 4.1:-53553644 | MS.gene069940:CDS |
| GAAAATCGTCGAGGTCCTTC+TGG | 0.265610 | 4.1:+53559831 | None:intergenic |
| TCCATAAAATCCCTTATAAC+TGG | 0.268000 | 4.1:+53560880 | None:intergenic |
| TGCTTTATGTGCAGACTAAA+AGG | 0.276588 | 4.1:-53560644 | MS.gene069940:intron |
| TTCTGCTTCTTTGTACTATC+AGG | 0.282569 | 4.1:-53564072 | MS.gene069940:intron |
| TGATATCATGGACATATTTA+AGG | 0.307481 | 4.1:-53560270 | MS.gene069940:CDS |
| AGTCCGAAACATCATTAAAA+AGG | 0.324163 | 4.1:-53562489 | MS.gene069940:intron |
| GGCTGCTACCAGTTTCCTTA+AGG | 0.325292 | 4.1:-53562630 | MS.gene069940:CDS |
| CTAAACCTTAGAGGGCCTTC+TGG | 0.329508 | 4.1:+53553645 | None:intergenic |
| TATAAATCAGCGTAGAATTA+TGG | 0.331406 | 4.1:-53554661 | MS.gene069940:intron |
| GGCTGATGATCTTCAATATT+AGG | 0.331743 | 4.1:+53562689 | None:intergenic |
| TTCGAATTCTTCTACAGTTA+AGG | 0.336831 | 4.1:+53560223 | None:intergenic |
| AGAAAAGAAATAGACATAGA+AGG | 0.337515 | 4.1:-53560092 | MS.gene069940:CDS |
| TGCCCCATGGATTGGTTATC+TGG | 0.341582 | 4.1:-53560924 | MS.gene069940:CDS |
| TACCAGTTTCCTTAAGGGTT+TGG | 0.342817 | 4.1:-53562624 | MS.gene069940:CDS |
| CAGCTCAGCTTCCGGGAGAT+TGG | 0.344513 | 4.1:-53553134 | MS.gene069940:CDS |
| ACAAACAGCAGCTCAGCTTC+CGG | 0.350319 | 4.1:-53553142 | MS.gene069940:CDS |
| AGCTCAGCTTCCGGGAGATT+GGG | 0.355497 | 4.1:-53553133 | MS.gene069940:CDS |
| AGCTTTGGTGGTATCCGATT+GGG | 0.357196 | 4.1:-53552936 | MS.gene069940:CDS |
| GGAGGCTTGCTCTTTCAAAA+AGG | 0.357921 | 4.1:+53555578 | None:intergenic |
| TGCCTCATGGGATGGTAGTT+TGG | 0.358988 | 4.1:-53554930 | MS.gene069940:CDS |
| AAAGAATTTCAAAACGTTGT+TGG | 0.362305 | 4.1:-53554238 | MS.gene069940:CDS |
| TTCTACTCTTCCAGTTATAA+GGG | 0.363991 | 4.1:-53560890 | MS.gene069940:CDS |
| GCTGCTACCAGTTTCCTTAA+GGG | 0.367418 | 4.1:-53562629 | MS.gene069940:CDS |
| ATTCATACCTGTGCAGTTGC+TGG | 0.368331 | 4.1:+53560023 | None:intergenic |
| CCGGGAGATTGGGTTTCAAT+TGG | 0.368827 | 4.1:-53553123 | MS.gene069940:CDS |
| GCCATCAGTTTCATGCCTTC+AGG | 0.369539 | 4.1:-53553611 | MS.gene069940:intron |
| TTCTTTAAGATCTAACATTC+CGG | 0.369690 | 4.1:+53554255 | None:intergenic |
| AGAAGGCCCTCTAAGGTTTA+GGG | 0.370443 | 4.1:-53553643 | MS.gene069940:CDS |
| GATCGATGCTGCAGACAAAA+AGG | 0.375334 | 4.1:-53562026 | MS.gene069940:CDS |
| AATATCCAGAAGGCCCTCTA+AGG | 0.379569 | 4.1:-53553650 | MS.gene069940:CDS |
| TTTGGACAGTTTGCTCCTCT+CGG | 0.382469 | 4.1:-53553171 | MS.gene069940:CDS |
| TTGGACAGTTTGCTCCTCTC+GGG | 0.386811 | 4.1:-53553170 | MS.gene069940:CDS |
| CAGTCAGTGGTTGTGGTATT+CGG | 0.389525 | 4.1:-53553094 | MS.gene069940:CDS |
| ATCCAAACCCTTAAGGAAAC+TGG | 0.396227 | 4.1:+53562622 | None:intergenic |
| TACGAATCGCCTTCCCCAAT+CGG | 0.399877 | 4.1:+53552922 | None:intergenic |
| AAAGTCGTGGTCCTTGGAAC+TGG | 0.400385 | 4.1:-53562656 | MS.gene069940:CDS |
| CCTTTCTGTTGCAGATTCCC+AGG | 0.415308 | 4.1:-53560057 | MS.gene069940:CDS |
| CAAACAGCAGCTCAGCTTCC+GGG | 0.415661 | 4.1:-53553141 | MS.gene069940:CDS |
| TTTCATCTGGGAATCAACTT+TGG | 0.418206 | 4.1:+53554078 | None:intergenic |
| GGGATGGTAGTTTGGTCAAC+TGG | 0.419171 | 4.1:-53554922 | MS.gene069940:CDS |
| GAAACATATACTTGATTTGA+GGG | 0.422160 | 4.1:-53560144 | MS.gene069940:CDS |
| ATCATCGGTTTCGTCCCTTC+CGG | 0.425142 | 4.1:-53559797 | MS.gene069940:intron |
| CAAGTGACACTCGGTAATAA+GGG | 0.426656 | 4.1:+53562545 | None:intergenic |
| GTTGAAACAGTCTGCAAGAT+AGG | 0.432669 | 4.1:+53553692 | None:intergenic |
| ATTGTTGGTGGTGGTCCAAC+TGG | 0.433243 | 4.1:-53555511 | MS.gene069940:CDS |
| GAAAAGAAATAGACATAGAA+GGG | 0.433481 | 4.1:-53560091 | MS.gene069940:CDS |
| AAGATAACACTAATTCAATC+TGG | 0.440272 | 4.1:-53561360 | MS.gene069940:CDS |
| CCTGTTCCCCTAAACCTTAG+AGG | 0.445725 | 4.1:+53553636 | None:intergenic |
| TTGACTTTATCTTTAATGGT+TGG | 0.446296 | 4.1:+53561381 | None:intergenic |
| AGCAGAAAGTTGGAAGAGAA+AGG | 0.447754 | 4.1:+53564088 | None:intergenic |
| GTGCTTGGAACTGGTTGGGC+TGG | 0.448822 | 4.1:-53556802 | MS.gene069940:CDS |
| TGATGTGAAATTGGGATCAA+TGG | 0.449893 | 4.1:-53555016 | MS.gene069940:CDS |
| CCTCTAAGGTTTAGGGGAAC+AGG | 0.458851 | 4.1:-53553636 | MS.gene069940:CDS |
| GATGGAATTGATGTGAAATT+GGG | 0.458874 | 4.1:-53555024 | MS.gene069940:CDS |
| GACACAGCAGTCAGTGGTTG+TGG | 0.459107 | 4.1:-53553101 | MS.gene069940:CDS |
| CTGGAGAACAAGAGCTTTGG+TGG | 0.459744 | 4.1:-53552948 | MS.gene069940:CDS |
| CCTGGAGGCTTTGTTGAAGA+AGG | 0.461816 | 4.1:+53564126 | None:intergenic |
| GGTGGAAGTTTAGTTGCATA+TGG | 0.466926 | 4.1:-53556883 | MS.gene069940:CDS |
| GTCTAATATTGAAAACTTAG+TGG | 0.466929 | 4.1:-53561993 | MS.gene069940:CDS |
| GTAGTTTGGTCAACTGGTAT+TGG | 0.467998 | 4.1:-53554916 | MS.gene069940:CDS |
| ACAATGAAGGTGAAATCAAC+GGG | 0.470147 | 4.1:-53560961 | MS.gene069940:CDS |
| TACTAAGTAATCATAATCAA+TGG | 0.471810 | 4.1:+53556408 | None:intergenic |
| TTGCTCTGTGCCCCATGGAT+TGG | 0.473874 | 4.1:-53560932 | MS.gene069940:CDS |
| CGATGTCCACTTCTGTCGTA+GGG | 0.477569 | 4.1:+53554122 | None:intergenic |
| ATGAACCATCCAAACCCTTA+AGG | 0.478727 | 4.1:+53562615 | None:intergenic |
| TTTAAATAAATGTCCACTTG+TGG | 0.478762 | 4.1:+53554196 | None:intergenic |
| AGGGTGAATGGTGAGGGCCC+TGG | 0.480488 | 4.1:+53564108 | None:intergenic |
| TTCTCTTCCACTGGTACAGA+AGG | 0.480719 | 4.1:+53555556 | None:intergenic |
| GGTAGTGCTTGGAACTGGTT+GGG | 0.480820 | 4.1:-53556806 | MS.gene069940:CDS |
| AAATCTACCGGCAACTGCTC+AGG | 0.482173 | 4.1:-53554056 | MS.gene069940:intron |
| GATGAATGGTTGAGAGTAAA+GGG | 0.482352 | 4.1:-53560606 | MS.gene069940:CDS |
| AGATGGTATAGAAGTTCAAA+CGG | 0.484698 | 4.1:-53561019 | MS.gene069940:CDS |
| TTGCTGGAAGAGTCTTCACC+TGG | 0.485095 | 4.1:+53560039 | None:intergenic |
| CCTTCTTCAACAAAGCCTCC+AGG | 0.485422 | 4.1:-53564126 | MS.gene069940:CDS |
| TGATGAATGGTTGAGAGTAA+AGG | 0.485744 | 4.1:-53560607 | MS.gene069940:CDS |
| AGTACAAAGAAGCAGAAAGT+TGG | 0.485887 | 4.1:+53564078 | None:intergenic |
| GAATGTACCTGAGCAGTTGC+CGG | 0.486209 | 4.1:+53554049 | None:intergenic |
| TATTACCGAGTGTCACTTGT+GGG | 0.486394 | 4.1:-53562541 | MS.gene069940:CDS |
| GGAGCATGCCTACTTCTTGA+AGG | 0.487135 | 4.1:-53556338 | MS.gene069940:intron |
| GGATCAATGGTTGTGAAAGT+TGG | 0.491130 | 4.1:-53555003 | MS.gene069940:CDS |
| CAGCTGGAGAACAAGAGCTT+TGG | 0.491737 | 4.1:-53552951 | MS.gene069940:CDS |
| AGTTTCCTTAAGGGTTTGGA+TGG | 0.492808 | 4.1:-53562620 | MS.gene069940:CDS |
| ATTGCTTACCTTCAAGAAGT+AGG | 0.493966 | 4.1:+53556330 | None:intergenic |
| GATATCTCATCCAAAGAAAG+AGG | 0.496111 | 4.1:-53554973 | MS.gene069940:CDS |
| GCGGTTTGCTCTGTGCCCCA+TGG | 0.497062 | 4.1:-53560937 | MS.gene069940:CDS |
| TCGATGTCCACTTCTGTCGT+AGG | 0.497327 | 4.1:+53554121 | None:intergenic |
| ATTTGGGTGAATATGACGAT+TGG | 0.499768 | 4.1:-53564151 | None:intergenic |
| TTCTTCTACAGTTAAGGTAC+CGG | 0.501994 | 4.1:+53560229 | None:intergenic |
| TTTAGATAGTATTCAACTTG+AGG | 0.503159 | 4.1:+53560170 | None:intergenic |
| GTTGTTGGAGGAGGTCCAAC+TGG | 0.504579 | 4.1:-53561462 | MS.gene069940:CDS |
| GAGCTTTGGTGGTATCCGAT+TGG | 0.506991 | 4.1:-53552937 | MS.gene069940:CDS |
| AGATCAGCATATAGTGATAG+TGG | 0.507539 | 4.1:-53556853 | MS.gene069940:CDS |
| GCAGAAAGTTGGAAGAGAAA+GGG | 0.510279 | 4.1:+53564089 | None:intergenic |
| TGCAGACTGTTTCAACCGCA+TGG | 0.512554 | 4.1:-53553685 | MS.gene069940:CDS |
| TGATTACTTAGTAATAGCTA+TGG | 0.512988 | 4.1:-53556398 | MS.gene069940:CDS |
| GGATTGGTTATCTGGTCCAC+TGG | 0.513081 | 4.1:-53560916 | MS.gene069940:CDS |
| GAACAAAAGTTCAAAAGAGA+TGG | 0.513759 | 4.1:-53555042 | MS.gene069940:CDS |
| AGAAACATATACTTGATTTG+AGG | 0.514547 | 4.1:-53560145 | MS.gene069940:CDS |
| AATAAATCAACGTAAAATCA+TGG | 0.516150 | 4.1:-53560547 | MS.gene069940:intron |
| TCGTGGTCCTTGGAACTGGA+TGG | 0.516860 | 4.1:-53562652 | MS.gene069940:CDS |
| TGGTGGTATCCGATTGGGGA+AGG | 0.520931 | 4.1:-53552931 | MS.gene069940:CDS |
| AAGGCAGACAAGGAGAATTC+CGG | 0.521572 | 4.1:-53554274 | MS.gene069940:CDS |
| ATTGAAAACTTAGTGGGAAG+TGG | 0.521615 | 4.1:-53561986 | MS.gene069940:CDS |
| TCTAATATTGAAAACTTAGT+GGG | 0.522285 | 4.1:-53561992 | MS.gene069940:CDS |
| CATGCAGCAAACTAGTCAGC+TGG | 0.522547 | 4.1:-53552967 | MS.gene069940:intron |
| AGAAAGAAAGTGGTAGTGCT+TGG | 0.526927 | 4.1:-53556817 | MS.gene069940:CDS |
| CTGCTTCTAGGATGATATCA+TGG | 0.528268 | 4.1:-53560282 | MS.gene069940:intron |
| GAGGTTGTTACTATGCCTCA+TGG | 0.528676 | 4.1:-53554943 | MS.gene069940:CDS |
| TCATCCAAAGAAAGAGGAAG+TGG | 0.530620 | 4.1:-53554967 | MS.gene069940:CDS |
| CTGTTCCCCTAAACCTTAGA+GGG | 0.533525 | 4.1:+53553637 | None:intergenic |
| GTTGGAAGAGAAAGGGTGAA+TGG | 0.534449 | 4.1:+53564096 | None:intergenic |
| GAGAAGAAGTTTACAAGAGA+TGG | 0.536920 | 4.1:-53561036 | MS.gene069940:CDS |
| TACTTGATTTGAGGGTTCTG+TGG | 0.539810 | 4.1:-53560136 | MS.gene069940:CDS |
| GATGAATGGCTAAGGGTGGA+AGG | 0.541227 | 4.1:-53554720 | MS.gene069940:CDS |
| TGACAAGGAAATTACAATGA+AGG | 0.542053 | 4.1:-53560974 | MS.gene069940:CDS |
| CTGGGAATCTGCAACAGAAA+GGG | 0.543531 | 4.1:+53560058 | None:intergenic |
| TGCTCCTCTTCAGATTGACT+CGG | 0.543713 | 4.1:+53561507 | None:intergenic |
| AAGATTACTCTCCTTGAGGC+TGG | 0.544003 | 4.1:-53555409 | MS.gene069940:CDS |
| CCTGGGAATCTGCAACAGAA+AGG | 0.545647 | 4.1:+53560057 | None:intergenic |
| TTGAGATTTACTTAGCAAAG+TGG | 0.547247 | 4.1:+53554150 | None:intergenic |
| AGAAAGCCCTACGACAGAAG+TGG | 0.547537 | 4.1:-53554128 | MS.gene069940:CDS |
| GCAGACTAAAAGGCATGTAC+TGG | 0.547750 | 4.1:-53560634 | MS.gene069940:intron |
| CCAATTGAAACCCAATCTCC+CGG | 0.553076 | 4.1:+53553123 | None:intergenic |
| CGTGGTCCTTGGAACTGGAT+GGG | 0.554266 | 4.1:-53562651 | MS.gene069940:CDS |
| TTTCAGGATCTGGACATCAT+CGG | 0.554643 | 4.1:-53559812 | MS.gene069940:CDS |
| TCAAAGACCAAGAAAGAAAG+TGG | 0.557967 | 4.1:-53556827 | MS.gene069940:CDS |
| TGTGACAACATCTATGCTCT+AGG | 0.558347 | 4.1:-53554696 | MS.gene069940:CDS |
| GATGGTATAGAAGTTCAAAC+GGG | 0.560775 | 4.1:-53561018 | MS.gene069940:CDS |
| TTATTACCGAGTGTCACTTG+TGG | 0.560816 | 4.1:-53562542 | MS.gene069940:CDS |
| TGTGAAGATGTGTTTGCCAT+TGG | 0.561141 | 4.1:-53560582 | MS.gene069940:CDS |
| TGGACCAGATAACCAATCCA+TGG | 0.561236 | 4.1:+53560920 | None:intergenic |
| TGGTAGTGCTTGGAACTGGT+TGG | 0.561852 | 4.1:-53556807 | MS.gene069940:CDS |
| GACTCTTCCAGCAACTGCAC+AGG | 0.562506 | 4.1:-53560030 | MS.gene069940:intron |
| TGTTACTATGCCTCATGGGA+TGG | 0.563772 | 4.1:-53554938 | MS.gene069940:CDS |
| AGAAGAATTCGAAGAAGTGA+TGG | 0.565316 | 4.1:-53560213 | MS.gene069940:CDS |
| CTTGGAAATTGCAGTGGTGG+AGG | 0.566583 | 4.1:-53562752 | MS.gene069940:intron |
| AGATATGATCGCCAGCCTCA+AGG | 0.566773 | 4.1:+53555398 | None:intergenic |
| AGCACTCTCAGAATCACAAT+CGG | 0.566811 | 4.1:-53562723 | MS.gene069940:CDS |
| AGACATAGAAGGGTTTAAGC+TGG | 0.568776 | 4.1:-53560081 | MS.gene069940:CDS |
| GCTGCAAATTCAACACCAGT+TGG | 0.573463 | 4.1:+53561447 | None:intergenic |
| TACAATGAAGGTGAAATCAA+CGG | 0.574139 | 4.1:-53560962 | MS.gene069940:CDS |
| CTTCTTCAACAAAGCCTCCA+GGG | 0.574335 | 4.1:-53564125 | MS.gene069940:CDS |
| GCAGCAAACTCTACTCCAGT+TGG | 0.575986 | 4.1:+53555496 | None:intergenic |
| GATTACTTAGTAATAGCTAT+GGG | 0.579165 | 4.1:-53556397 | MS.gene069940:CDS |
| GAAGGCCCTCTAAGGTTTAG+GGG | 0.579339 | 4.1:-53553642 | MS.gene069940:CDS |
| GTGCATTGGTGACTGATGAA+TGG | 0.579418 | 4.1:-53554734 | MS.gene069940:CDS |
| GGACCAGATAACCAATCCAT+GGG | 0.579782 | 4.1:+53560921 | None:intergenic |
| TGGTGACTGATGAATGGCTA+AGG | 0.581360 | 4.1:-53554728 | MS.gene069940:CDS |
| GATTCGTAAAATCAGCAGAA+AGG | 0.582412 | 4.1:-53556644 | MS.gene069940:intron |
| CAATTGGACACAGCAGTCAG+TGG | 0.584037 | 4.1:-53553107 | MS.gene069940:CDS |
| AAAGTGGTAGTGCTTGGAAC+TGG | 0.584146 | 4.1:-53556811 | MS.gene069940:CDS |
| GCTTTGGTGGTATCCGATTG+GGG | 0.584873 | 4.1:-53552935 | MS.gene069940:CDS |
| TATTGATGAACAATCACCAA+TGG | 0.585097 | 4.1:+53560566 | None:intergenic |
| GACTTCTTGGTTGTAGCAGT+AGG | 0.590242 | 4.1:-53561944 | MS.gene069940:CDS |
| AGAGAAAGGGTGAATGGTGA+GGG | 0.590542 | 4.1:+53564102 | None:intergenic |
| AGGTTGTTACTATGCCTCAT+GGG | 0.590654 | 4.1:-53554942 | MS.gene069940:CDS |
| CAAGTAACACTTGGTAGCAA+AGG | 0.591598 | 4.1:+53556700 | None:intergenic |
| GTGAATGGTGAGGGCCCTGG+AGG | 0.595344 | 4.1:+53564111 | None:intergenic |
| AAGAATGGGGTTTACCGGAA+GGG | 0.595986 | 4.1:+53559783 | None:intergenic |
| GTCAATCTGAAGAGGAGCAA+AGG | 0.596000 | 4.1:-53561503 | MS.gene069940:CDS |
| TTGACATGGTCTATAAGAGA+AGG | 0.596187 | 4.1:+53555430 | None:intergenic |
| ATGTACTGGCAACTGATGAA+TGG | 0.599584 | 4.1:-53560620 | MS.gene069940:CDS |
| CGCGATTAAAGCAACTTGCT+AGG | 0.599701 | 4.1:+53559874 | None:intergenic |
| ATAGATTAACCGGCGTGCAT+TGG | 0.600627 | 4.1:-53554748 | MS.gene069940:intron |
| TGGACAGTTTGCTCCTCTCG+GGG | 0.600681 | 4.1:-53553169 | MS.gene069940:CDS |
| TGTAATAGATTGTCTTGAGA+AGG | 0.601188 | 4.1:-53561538 | MS.gene069940:CDS |
| TGACAGTTCTCCTTAACACC+AGG | 0.601556 | 4.1:+53561896 | None:intergenic |
| CAAGGAGAGTAATCTTGACA+TGG | 0.604814 | 4.1:+53555416 | None:intergenic |
| TAGGCATGCTCCTCAACACC+AGG | 0.607613 | 4.1:+53556349 | None:intergenic |
| GAAGGTGAAATCAACGGGAG+CGG | 0.608655 | 4.1:-53560956 | MS.gene069940:CDS |
| AAGAGAAAGGGTGAATGGTG+AGG | 0.623100 | 4.1:+53564101 | None:intergenic |
| GATATTTAACAAGGCAGACA+AGG | 0.623419 | 4.1:-53554284 | MS.gene069940:CDS |
| CTTCCACTGGTACAGAAGGG+AGG | 0.623592 | 4.1:+53555560 | None:intergenic |
| TCTTCCGAGTCAATCTGAAG+AGG | 0.623685 | 4.1:-53561511 | MS.gene069940:CDS |
| ATATAGGTTGCTGCGCAACA+AGG | 0.625684 | 4.1:-53559903 | MS.gene069940:intron |
| TGTTACTTGCGGCACTGTGG+AGG | 0.626413 | 4.1:-53556686 | MS.gene069940:CDS |
| AAATTGCAGTGGTGGAGGTG+TGG | 0.626731 | 4.1:-53562747 | MS.gene069940:intron |
| ATGAATGGCTAAGGGTGGAA+GGG | 0.627806 | 4.1:-53554719 | MS.gene069940:CDS |
| TTCCAGGTAGCTGCTCAACA+AGG | 0.628578 | 4.1:-53553717 | MS.gene069940:intron |
| GCTGTTTGTTCTGCCCCGAG+AGG | 0.629289 | 4.1:+53553156 | None:intergenic |
| TCTCTTCCACTGGTACAGAA+GGG | 0.629584 | 4.1:+53555557 | None:intergenic |
| TAGCAGCCCATCCAGTTCCA+AGG | 0.629847 | 4.1:+53562645 | None:intergenic |
| CTTGTGGGTCAGTTGAAGCA+CGG | 0.632171 | 4.1:-53562526 | MS.gene069940:CDS |
| AAGCCTCCCTTCTGTACCAG+TGG | 0.633348 | 4.1:-53555563 | MS.gene069940:CDS |
| TGCTGGAAGAGTCTTCACCT+GGG | 0.634925 | 4.1:+53560040 | None:intergenic |
| TATTGAGAGGTATCCACAAG+TGG | 0.637539 | 4.1:-53554209 | MS.gene069940:CDS |
| GATACTGAAGAGCATCCAGA+AGG | 0.642109 | 4.1:-53559846 | MS.gene069940:CDS |
| TTGTTGGTGACATTATTGAG+AGG | 0.650919 | 4.1:-53554222 | MS.gene069940:CDS |
| TTGCTACCAAGTGTTACTTG+CGG | 0.651218 | 4.1:-53556697 | MS.gene069940:CDS |
| TATAGCTGTGATATTTAACA+AGG | 0.657322 | 4.1:-53554293 | MS.gene069940:CDS |
| GACTGATGAATGGCTAAGGG+TGG | 0.658645 | 4.1:-53554724 | MS.gene069940:CDS |
| GACAGTTCTCCTTAACACCA+GGG | 0.658869 | 4.1:+53561897 | None:intergenic |
| GAAGAATCAAATGAAAGACA+TGG | 0.659440 | 4.1:-53554173 | MS.gene069940:CDS |
| ACAGTGCCGCAAGTAACACT+TGG | 0.662174 | 4.1:+53556691 | None:intergenic |
| TGTCAAGATTACTCTCCTTG+AGG | 0.674606 | 4.1:-53555413 | MS.gene069940:CDS |
| TTGTGTGAGAAATATCCAGA+AGG | 0.679586 | 4.1:-53553660 | MS.gene069940:CDS |
| TAATCACTTATAGAGTGTCG+AGG | 0.680994 | 4.1:-53561583 | MS.gene069940:intron |
| ACTGACCCACAAGTGACACT+CGG | 0.681921 | 4.1:+53562536 | None:intergenic |
| CATCAGTCACCAATGCACGC+CGG | 0.682178 | 4.1:+53554739 | None:intergenic |
| TGTCATCAACACTCATAACA+CGG | 0.684459 | 4.1:+53560992 | None:intergenic |
| GGTGACTGATGAATGGCTAA+GGG | 0.691978 | 4.1:-53554727 | MS.gene069940:CDS |
| TGTTATGAGTGTTGATGACA+AGG | 0.693444 | 4.1:-53560989 | MS.gene069940:CDS |
| ACCTGAAGGCATGAAACTGA+TGG | 0.701577 | 4.1:+53553610 | None:intergenic |
| TGGAAGAGTAGAAATGCCAG+TGG | 0.705182 | 4.1:+53560900 | None:intergenic |
| CAAAGAAAGAGGAAGTGGTG+AGG | 0.709326 | 4.1:-53554962 | MS.gene069940:CDS |
| AAGTGTTACTTGCGGCACTG+TGG | 0.710165 | 4.1:-53556689 | MS.gene069940:CDS |
| ATTTCTCACACAATTCCATG+CGG | 0.714442 | 4.1:+53553670 | None:intergenic |
| ACAGTTCTCCTTAACACCAG+GGG | 0.714844 | 4.1:+53561898 | None:intergenic |
| GACCAAACTACCATCCCATG+AGG | 0.728671 | 4.1:+53554928 | None:intergenic |
| GTAAATGCAAAGTAGTTACG+AGG | 0.734579 | 4.1:+53562569 | None:intergenic |
| GTTCTGTGGAACGACCCACA+AGG | 0.743834 | 4.1:-53560122 | MS.gene069940:CDS |
| CCAGATCCTGAAAATCGTCG+AGG | 0.744477 | 4.1:+53559822 | None:intergenic |
| GTGAATGCAAAATAGTTACG+TGG | 0.750279 | 4.1:+53556724 | None:intergenic |
| GACCAGATAACCAATCCATG+GGG | 0.771259 | 4.1:+53560922 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 53552848 | 53564161 | 53552848 | ID=MS.gene069940 |
| chr4.1 | mRNA | 53552848 | 53564161 | 53552848 | ID=MS.gene069940.t1;Parent=MS.gene069940 |
| chr4.1 | exon | 53564073 | 53564161 | 53564073 | ID=MS.gene069940.t1.exon1;Parent=MS.gene069940.t1 |
| chr4.1 | CDS | 53564073 | 53564161 | 53564073 | ID=cds.MS.gene069940.t1;Parent=MS.gene069940.t1 |
| chr4.1 | exon | 53562490 | 53562760 | 53562490 | ID=MS.gene069940.t1.exon2;Parent=MS.gene069940.t1 |
| chr4.1 | CDS | 53562490 | 53562760 | 53562490 | ID=cds.MS.gene069940.t1;Parent=MS.gene069940.t1 |
| chr4.1 | exon | 53561886 | 53562089 | 53561886 | ID=MS.gene069940.t1.exon3;Parent=MS.gene069940.t1 |
| chr4.1 | CDS | 53561886 | 53562089 | 53561886 | ID=cds.MS.gene069940.t1;Parent=MS.gene069940.t1 |
| chr4.1 | exon | 53561342 | 53561592 | 53561342 | ID=MS.gene069940.t1.exon4;Parent=MS.gene069940.t1 |
| chr4.1 | CDS | 53561342 | 53561592 | 53561342 | ID=cds.MS.gene069940.t1;Parent=MS.gene069940.t1 |
| chr4.1 | exon | 53560867 | 53561086 | 53560867 | ID=MS.gene069940.t1.exon5;Parent=MS.gene069940.t1 |
| chr4.1 | CDS | 53560867 | 53561086 | 53560867 | ID=cds.MS.gene069940.t1;Parent=MS.gene069940.t1 |
| chr4.1 | exon | 53560548 | 53560652 | 53560548 | ID=MS.gene069940.t1.exon6;Parent=MS.gene069940.t1 |
| chr4.1 | CDS | 53560548 | 53560652 | 53560548 | ID=cds.MS.gene069940.t1;Parent=MS.gene069940.t1 |
| chr4.1 | exon | 53560031 | 53560294 | 53560031 | ID=MS.gene069940.t1.exon7;Parent=MS.gene069940.t1 |
| chr4.1 | CDS | 53560031 | 53560294 | 53560031 | ID=cds.MS.gene069940.t1;Parent=MS.gene069940.t1 |
| chr4.1 | exon | 53559798 | 53559919 | 53559798 | ID=MS.gene069940.t1.exon8;Parent=MS.gene069940.t1 |
| chr4.1 | CDS | 53559798 | 53559919 | 53559798 | ID=cds.MS.gene069940.t1;Parent=MS.gene069940.t1 |
| chr4.1 | exon | 53556645 | 53556906 | 53556645 | ID=MS.gene069940.t1.exon9;Parent=MS.gene069940.t1 |
| chr4.1 | CDS | 53556645 | 53556906 | 53556645 | ID=cds.MS.gene069940.t1;Parent=MS.gene069940.t1 |
| chr4.1 | exon | 53556339 | 53556545 | 53556339 | ID=MS.gene069940.t1.exon10;Parent=MS.gene069940.t1 |
| chr4.1 | CDS | 53556339 | 53556545 | 53556339 | ID=cds.MS.gene069940.t1;Parent=MS.gene069940.t1 |
| chr4.1 | exon | 53555391 | 53555641 | 53555391 | ID=MS.gene069940.t1.exon11;Parent=MS.gene069940.t1 |
| chr4.1 | CDS | 53555391 | 53555641 | 53555391 | ID=cds.MS.gene069940.t1;Parent=MS.gene069940.t1 |
| chr4.1 | exon | 53554873 | 53555092 | 53554873 | ID=MS.gene069940.t1.exon12;Parent=MS.gene069940.t1 |
| chr4.1 | CDS | 53554873 | 53555092 | 53554873 | ID=cds.MS.gene069940.t1;Parent=MS.gene069940.t1 |
| chr4.1 | exon | 53554662 | 53554766 | 53554662 | ID=MS.gene069940.t1.exon13;Parent=MS.gene069940.t1 |
| chr4.1 | CDS | 53554662 | 53554766 | 53554662 | ID=cds.MS.gene069940.t1;Parent=MS.gene069940.t1 |
| chr4.1 | exon | 53554057 | 53554320 | 53554057 | ID=MS.gene069940.t1.exon14;Parent=MS.gene069940.t1 |
| chr4.1 | CDS | 53554057 | 53554320 | 53554057 | ID=cds.MS.gene069940.t1;Parent=MS.gene069940.t1 |
| chr4.1 | exon | 53553612 | 53553733 | 53553612 | ID=MS.gene069940.t1.exon15;Parent=MS.gene069940.t1 |
| chr4.1 | CDS | 53553612 | 53553733 | 53553612 | ID=cds.MS.gene069940.t1;Parent=MS.gene069940.t1 |
| chr4.1 | exon | 53553089 | 53553203 | 53553089 | ID=MS.gene069940.t1.exon16;Parent=MS.gene069940.t1 |
| chr4.1 | CDS | 53553089 | 53553203 | 53553089 | ID=cds.MS.gene069940.t1;Parent=MS.gene069940.t1 |
| chr4.1 | exon | 53552848 | 53552982 | 53552848 | ID=MS.gene069940.t1.exon17;Parent=MS.gene069940.t1 |
| chr4.1 | CDS | 53552848 | 53552982 | 53552848 | ID=cds.MS.gene069940.t1;Parent=MS.gene069940.t1 |
| Gene Sequence |
| Protein sequence |
