Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070092.t1 | XP_024639787.1 | 74.3 | 751 | 154 | 7 | 2 | 719 | 98 | 842 | 1.20E-302 | 1048.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070092.t1 | Q9FHJ6 | 61.7 | 494 | 185 | 3 | 141 | 634 | 297 | 786 | 9.6e-181 | 635.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070092.t1 | A0A396HQ15 | 74.3 | 751 | 154 | 7 | 2 | 719 | 98 | 842 | 8.3e-303 | 1048.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22500 | MS.gene070092 | PPI |
| MS.gene05640 | MS.gene070092 | PPI |
| MS.gene61736 | MS.gene070092 | PPI |
| MS.gene070092 | MS.gene67108 | PPI |
| MS.gene08109 | MS.gene070092 | PPI |
| MS.gene04079 | MS.gene070092 | PPI |
| MS.gene61735 | MS.gene070092 | PPI |
| MS.gene072702 | MS.gene070092 | PPI |
| MS.gene070092 | MS.gene041794 | PPI |
| MS.gene070092 | MS.gene07051 | PPI |
| MS.gene041861 | MS.gene070092 | PPI |
| MS.gene070092 | MS.gene044021 | PPI |
| MS.gene24383 | MS.gene070092 | PPI |
| MS.gene070092 | MS.gene061260 | PPI |
| MS.gene04418 | MS.gene070092 | PPI |
| MS.gene062778 | MS.gene070092 | PPI |
| MS.gene28807 | MS.gene070092 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070092.t1 | MTR_2g041270 | 60.455 | 483 | 187 | 3 | 108 | 589 | 148 | 627 | 0.0 | 618 |
| MS.gene070092.t1 | MTR_3g047950 | 50.302 | 497 | 219 | 6 | 105 | 587 | 101 | 583 | 1.29e-169 | 509 |
| MS.gene070092.t1 | MTR_4g109580 | 35.477 | 451 | 273 | 7 | 145 | 586 | 173 | 614 | 6.97e-81 | 271 |
| MS.gene070092.t1 | MTR_4g109580 | 37.306 | 386 | 225 | 6 | 145 | 521 | 173 | 550 | 3.61e-73 | 249 |
| MS.gene070092.t1 | MTR_4g109590 | 25.191 | 262 | 153 | 7 | 314 | 564 | 18 | 247 | 8.42e-19 | 87.4 |
| MS.gene070092.t1 | MTR_4g070090 | 23.573 | 403 | 281 | 15 | 155 | 548 | 42 | 426 | 3.26e-15 | 79.7 |
| MS.gene070092.t1 | MTR_5g027390 | 23.562 | 365 | 257 | 13 | 193 | 548 | 43 | 394 | 3.64e-14 | 76.3 |
| MS.gene070092.t1 | MTR_5g026880 | 82.051 | 39 | 7 | 0 | 4 | 42 | 90 | 128 | 9.70e-14 | 69.3 |
| MS.gene070092.t1 | MTR_5g078250 | 21.990 | 382 | 269 | 12 | 146 | 517 | 8 | 370 | 2.05e-12 | 70.9 |
| MS.gene070092.t1 | MTR_2g048560 | 22.135 | 384 | 263 | 16 | 140 | 508 | 2 | 364 | 9.10e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070092.t1 | AT5G45400 | 57.591 | 606 | 236 | 10 | 110 | 713 | 267 | 853 | 0.0 | 708 |
| MS.gene070092.t1 | AT4G19130 | 51.310 | 725 | 298 | 14 | 2 | 713 | 103 | 785 | 0.0 | 690 |
| MS.gene070092.t1 | AT4G19130 | 51.310 | 725 | 298 | 14 | 2 | 713 | 102 | 784 | 0.0 | 690 |
| MS.gene070092.t1 | AT2G06510 | 58.298 | 470 | 190 | 4 | 116 | 583 | 173 | 638 | 0.0 | 579 |
| MS.gene070092.t1 | AT2G06510 | 56.762 | 488 | 205 | 4 | 98 | 583 | 132 | 615 | 0.0 | 579 |
| MS.gene070092.t1 | AT5G08020 | 34.406 | 497 | 299 | 10 | 109 | 590 | 120 | 604 | 1.04e-88 | 291 |
| MS.gene070092.t1 | AT5G61000 | 33.669 | 496 | 301 | 10 | 109 | 588 | 144 | 627 | 4.23e-79 | 266 |
| MS.gene070092.t1 | AT1G52950 | 21.729 | 451 | 300 | 18 | 146 | 569 | 10 | 434 | 7.70e-15 | 78.6 |
Find 191 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGGGGCATTTCCAATTT+TGG | 0.090395 | 5.4:+17792966 | MS.gene070092:CDS |
| CAAATTAAAGATGAAAATTT+AGG | 0.110279 | 5.4:+17793192 | MS.gene070092:CDS |
| CCATTTCCCATCTCCATTAA+TGG | 0.173464 | 5.4:-17793337 | None:intergenic |
| ACTAATACTGGTAGAGATTA+TGG | 0.192201 | 5.4:+17793828 | MS.gene070092:CDS |
| TACTGTCTCCCTTGATTTGC+TGG | 0.197849 | 5.4:-17793855 | None:intergenic |
| TTCTCGCTTAGCCGTTATTC+TGG | 0.243165 | 5.4:-17792434 | None:intergenic |
| TTGGGACATTCCTCCCTTCC+TGG | 0.264291 | 5.4:-17793107 | None:intergenic |
| CATTGCCACCAGCCAATTAT+TGG | 0.268493 | 5.4:+17793038 | MS.gene070092:CDS |
| GTATTAGTGTTGCTATTTAT+AGG | 0.272455 | 5.4:-17793813 | None:intergenic |
| CAATCAGCTGCTGGTCAATT+AGG | 0.281184 | 5.4:+17792058 | MS.gene070092:CDS |
| AATCAGGTTCTACCAATAAT+TGG | 0.283594 | 5.4:-17793050 | None:intergenic |
| CAGGTTGATTTCTAAGACTT+AGG | 0.296689 | 5.4:-17793977 | None:intergenic |
| CTGTTGATGCTTGTGATTAT+AGG | 0.300029 | 5.4:+17793382 | MS.gene070092:CDS |
| TCTTCCCGTAGGTTCTCTAT+TGG | 0.312082 | 5.4:-17792335 | None:intergenic |
| TATGGATTCAAAGCAGATAT+TGG | 0.313616 | 5.4:-17792388 | None:intergenic |
| GACTTCAATGGGAAGTCTAT+TGG | 0.320866 | 5.4:+17793012 | MS.gene070092:CDS |
| ATTGTCCACATATTCTGATA+TGG | 0.329169 | 5.4:-17792406 | None:intergenic |
| GATTGTGCAGGTGCTTCTTT+TGG | 0.329678 | 5.4:-17792010 | None:intergenic |
| CTTGACAAATGGGACTTGAT+TGG | 0.331100 | 5.4:+17791971 | MS.gene070092:CDS |
| CATTGGTGACATTGAAAGTA+TGG | 0.337409 | 5.4:+17792750 | MS.gene070092:CDS |
| AAATTAAAGATGAAAATTTA+GGG | 0.343214 | 5.4:+17793193 | MS.gene070092:CDS |
| AAATGTGGCTGTGCCATCTA+TGG | 0.351761 | 5.4:+17792147 | MS.gene070092:CDS |
| GGGATTATACTTGGGGCTGG+GGG | 0.353000 | 5.4:-17792367 | None:intergenic |
| GCAAATCAAGGGAGACAGTA+TGG | 0.353573 | 5.4:+17793858 | MS.gene070092:CDS |
| CTGCAAAATATTTGCGACTC+TGG | 0.355243 | 5.4:+17792949 | MS.gene070092:CDS |
| TTCAGCGAATCATCTAGTTT+TGG | 0.356590 | 5.4:+17793141 | MS.gene070092:CDS |
| GTAAAAGCCTCTGGAAAATC+AGG | 0.366700 | 5.4:-17793066 | None:intergenic |
| TGCTATAGATGGCAGCATAT+TGG | 0.372249 | 5.4:+17794065 | MS.gene070092:CDS |
| TGCAAAATATTTGCGACTCT+GGG | 0.373210 | 5.4:+17792950 | MS.gene070092:CDS |
| AATATGCTGATAGGAATCAT+AGG | 0.374551 | 5.4:+17794182 | MS.gene070092:CDS |
| GTTGGATCAGGTGGTGCTTC+GGG | 0.375032 | 5.4:+17794038 | MS.gene070092:CDS |
| ATCTGAATCAAAATCTCTTC+TGG | 0.375129 | 5.4:+17793674 | MS.gene070092:CDS |
| AACTCTGCTATCAACACAAC+TGG | 0.376895 | 5.4:+17793744 | MS.gene070092:CDS |
| TGGCACCGGTCTATTCAAAT+TGG | 0.380597 | 5.4:-17792251 | None:intergenic |
| AGATAGGAAATGTAACAAAA+AGG | 0.384124 | 5.4:+17793311 | MS.gene070092:CDS |
| TGGGATTATACTTGGGGCTG+GGG | 0.388493 | 5.4:-17792368 | None:intergenic |
| AGTGTTTATTCCAACACTTC+TGG | 0.392993 | 5.4:+17792199 | MS.gene070092:CDS |
| AGGGTGATCTCTTGATCATT+AGG | 0.394098 | 5.4:-17792652 | None:intergenic |
| GGCCAGACATGTCTTTCAAC+TGG | 0.394180 | 5.4:-17792873 | None:intergenic |
| ACTTCAATGGGAAGTCTATT+GGG | 0.394181 | 5.4:+17793013 | MS.gene070092:CDS |
| ATGGATTCAAAGCAGATATT+GGG | 0.394808 | 5.4:-17792387 | None:intergenic |
| TGGATGTTATACTTGACAAA+TGG | 0.395820 | 5.4:+17791960 | MS.gene070092:CDS |
| ATAAATAGCAACACTAATAC+TGG | 0.396439 | 5.4:+17793816 | MS.gene070092:CDS |
| ACTGTCTCCCTTGATTTGCT+GGG | 0.404586 | 5.4:-17793854 | None:intergenic |
| GTAAAGTCTATCTTGTTTCA+AGG | 0.408554 | 5.4:+17792590 | MS.gene070092:CDS |
| TGTTGGATCAGGTGGTGCTT+CGG | 0.416969 | 5.4:+17794037 | MS.gene070092:CDS |
| AAAAGCACAAGAAGGTCATC+AGG | 0.419673 | 5.4:-17794229 | None:intergenic |
| GGACTTCTGAGAAGCCTGAT+TGG | 0.419699 | 5.4:+17793214 | MS.gene070092:CDS |
| CCATTAATGGAGATGGGAAA+TGG | 0.422381 | 5.4:+17793337 | MS.gene070092:CDS |
| TGCGACACAAATATGCTGAT+AGG | 0.425685 | 5.4:+17794173 | MS.gene070092:CDS |
| AATAGACCGGTGCCAGTCAA+TGG | 0.428354 | 5.4:+17792259 | MS.gene070092:CDS |
| CTAATACTGGTAGAGATTAT+GGG | 0.434473 | 5.4:+17793829 | MS.gene070092:CDS |
| GCAGATATTGGGATTATACT+TGG | 0.435057 | 5.4:-17792376 | None:intergenic |
| GCCAGAGTAAATGCTTTCAA+TGG | 0.441532 | 5.4:+17794110 | MS.gene070092:CDS |
| CTATTTATAGGATTATATAC+TGG | 0.442454 | 5.4:-17793801 | None:intergenic |
| ACAGCTTGTCCTATCATGAT+AGG | 0.445959 | 5.4:+17793288 | MS.gene070092:CDS |
| CTTTCAATGGGAAGTCTGTT+GGG | 0.446726 | 5.4:+17794123 | MS.gene070092:CDS |
| AACAGGGTGTCTGTTGGATC+AGG | 0.448421 | 5.4:+17794026 | MS.gene070092:CDS |
| GCCAGAGTAAATGACTTCAA+TGG | 0.448872 | 5.4:+17793000 | MS.gene070092:CDS |
| ATAGATGGCACAGCCACATT+TGG | 0.450374 | 5.4:-17792145 | None:intergenic |
| GCTTTCAATGGGAAGTCTGT+TGG | 0.450488 | 5.4:+17794122 | MS.gene070092:CDS |
| TGTAGCAACTGTGGAGGCTC+TGG | 0.451488 | 5.4:+17793936 | MS.gene070092:CDS |
| GACGGAAATTGTAAATCTGC+TGG | 0.454634 | 5.4:-17792726 | None:intergenic |
| ATTCGGACGGTGGAGAAATA+CGG | 0.455045 | 5.4:+17792515 | MS.gene070092:CDS |
| ATGGCAGCATATTGGACATT+GGG | 0.457784 | 5.4:+17794073 | MS.gene070092:CDS |
| TTGGGATTATACTTGGGGCT+GGG | 0.458057 | 5.4:-17792369 | None:intergenic |
| CAATAATTGGCTGGTGGCAA+TGG | 0.462805 | 5.4:-17793037 | None:intergenic |
| GCTATCAACACAACTGGACC+AGG | 0.466648 | 5.4:+17793750 | MS.gene070092:CDS |
| AAGGTTACCATTAATGGAGA+TGG | 0.467707 | 5.4:+17793330 | MS.gene070092:CDS |
| CTTCGGGTAATTGCTATAGA+TGG | 0.468477 | 5.4:+17794054 | MS.gene070092:CDS |
| TTCCTATCTCCTATCATGAT+AGG | 0.468609 | 5.4:-17793297 | None:intergenic |
| CCAGAGTAAATGACTTCAAT+GGG | 0.469838 | 5.4:+17793001 | MS.gene070092:CDS |
| GTTCAAGTTAAAAGTAAAAG+AGG | 0.469995 | 5.4:+17793584 | MS.gene070092:CDS |
| GAAGTGTTGAATTAACTGTA+TGG | 0.471291 | 5.4:+17792896 | MS.gene070092:CDS |
| TTGAAAGCATTTACTCTGGC+AGG | 0.471556 | 5.4:-17794107 | None:intergenic |
| ATGGGAAATGGCGTTGTGTA+AGG | 0.472745 | 5.4:+17793349 | MS.gene070092:CDS |
| GACAATTAAAGCCAGAATAA+CGG | 0.475855 | 5.4:+17792423 | MS.gene070092:CDS |
| TCTCTCAGTGTAAAAGCCTC+TGG | 0.476862 | 5.4:-17793075 | None:intergenic |
| AACGGTGGTTCCTATGCAGC+TGG | 0.480530 | 5.4:+17792109 | MS.gene070092:CDS |
| CAGATATTGGGATTATACTT+GGG | 0.483457 | 5.4:-17792375 | None:intergenic |
| GGATGTTATACTTGACAAAT+GGG | 0.487105 | 5.4:+17791961 | MS.gene070092:CDS |
| CTCCAGTTGAAAGACATGTC+TGG | 0.498906 | 5.4:+17792871 | MS.gene070092:CDS |
| TAAAGTCTATCTTGTTTCAA+GGG | 0.500547 | 5.4:+17792591 | MS.gene070092:CDS |
| ACAGTCGGACGATCCATAGA+TGG | 0.501554 | 5.4:-17792160 | None:intergenic |
| CGCTGAAAATAGATTGACTT+GGG | 0.502261 | 5.4:-17793125 | None:intergenic |
| ATTGGGATTATACTTGGGGC+TGG | 0.502489 | 5.4:-17792370 | None:intergenic |
| CCCATTGAAGTCATTTACTC+TGG | 0.505729 | 5.4:-17793001 | None:intergenic |
| CATACTTTCAATGTCACCAA+TGG | 0.506813 | 5.4:-17792749 | None:intergenic |
| GTTGATAGCAGAGTTAATAG+TGG | 0.507516 | 5.4:-17793736 | None:intergenic |
| GGTGGCGTAGCTTGTCCACT+TGG | 0.507990 | 5.4:-17793780 | None:intergenic |
| AAGTGTTGAATTAACTGTAT+GGG | 0.508629 | 5.4:+17792897 | MS.gene070092:CDS |
| CCAGAGTAAATGCTTTCAAT+GGG | 0.511038 | 5.4:+17794111 | MS.gene070092:CDS |
| ATATGCTGATAGGAATCATA+GGG | 0.515936 | 5.4:+17794183 | MS.gene070092:CDS |
| GCACAGATAGATATCCAATC+AGG | 0.516540 | 5.4:-17793228 | None:intergenic |
| ATCATTAATGCCAGCTGCAT+AGG | 0.517325 | 5.4:-17792119 | None:intergenic |
| GTCCTATCATGATAGGAGAT+AGG | 0.520523 | 5.4:+17793295 | MS.gene070092:CDS |
| ATTTACAATTTCCGTCCCAT+TGG | 0.520615 | 5.4:+17792733 | MS.gene070092:CDS |
| TATGGGACCCCAGCAAATCA+AGG | 0.522049 | 5.4:+17793846 | MS.gene070092:CDS |
| TGTCCACTTGGAAGGCACCC+TGG | 0.524694 | 5.4:-17793768 | None:intergenic |
| TGAATCCATATCAGAATATG+TGG | 0.525989 | 5.4:+17792401 | MS.gene070092:CDS |
| ATACTTTCAATGTCACCAAT+GGG | 0.528293 | 5.4:-17792748 | None:intergenic |
| GGCAACTTGCTTTAATGCCG+TGG | 0.529916 | 5.4:+17792537 | MS.gene070092:CDS |
| TTCGGACGGTGGAGAAATAC+GGG | 0.532082 | 5.4:+17792516 | MS.gene070092:CDS |
| ATCAACCTGAACAGTCTGAT+GGG | 0.532694 | 5.4:+17793991 | MS.gene070092:CDS |
| ATGATCACACTGGAATGACT+TGG | 0.534220 | 5.4:+17793427 | MS.gene070092:CDS |
| ATAGACCGGTGCCAGTCAAT+GGG | 0.538835 | 5.4:+17792260 | MS.gene070092:CDS |
| CAATCTGATGTGAGTCATGC+AGG | 0.538866 | 5.4:+17792028 | MS.gene070092:CDS |
| GTATAACTGATGTGATATCA+AGG | 0.540445 | 5.4:-17792672 | None:intergenic |
| TTTCTCATGATTGATGCTGT+AGG | 0.540594 | 5.4:-17792820 | None:intergenic |
| CCCATTGAAAGCATTTACTC+TGG | 0.541065 | 5.4:-17794111 | None:intergenic |
| TCTTGCAGATCCAGAAGTGT+TGG | 0.541245 | 5.4:-17792209 | None:intergenic |
| ACCTGAACAGTCTGATGGGG+GGG | 0.541556 | 5.4:+17793995 | MS.gene070092:CDS |
| GTACACCAATAGAGAACCTA+CGG | 0.546832 | 5.4:+17792330 | MS.gene070092:CDS |
| TATAACAATGCCCGAGGTGA+GGG | 0.549414 | 5.4:+17792466 | MS.gene070092:CDS |
| GATGGCAGCATATTGGACAT+TGG | 0.549717 | 5.4:+17794072 | MS.gene070092:CDS |
| CTTGATTGGAAAACCTGTCC+CGG | 0.551122 | 5.4:+17791985 | MS.gene070092:CDS |
| GGCTGTCGGTACATAGGCTG+AGG | 0.554196 | 5.4:-17792298 | None:intergenic |
| GGAGATGGCTGTCGGTACAT+AGG | 0.555014 | 5.4:-17792304 | None:intergenic |
| AGGTTCTACCAATAATTGGC+TGG | 0.555216 | 5.4:-17793046 | None:intergenic |
| ATTTGCAGAAATCATCCGTA+AGG | 0.556193 | 5.4:+17793542 | MS.gene070092:CDS |
| GCGTAGCTTGTCCACTTGGA+AGG | 0.557207 | 5.4:-17793776 | None:intergenic |
| GCAAGATACAGTACATCTGA+TGG | 0.557340 | 5.4:+17792226 | MS.gene070092:CDS |
| TAACGGCTAAGCGAGAACTC+AGG | 0.558612 | 5.4:+17792440 | MS.gene070092:CDS |
| ACGGAAATTGTAAATCTGCT+GGG | 0.558897 | 5.4:-17792725 | None:intergenic |
| TGGAGCCAATTTGAATAGAC+CGG | 0.560042 | 5.4:+17792246 | MS.gene070092:CDS |
| CTATTGGTGTACATAGGAGA+TGG | 0.561342 | 5.4:-17792319 | None:intergenic |
| CTGTCTCCCTTGATTTGCTG+GGG | 0.561982 | 5.4:-17793853 | None:intergenic |
| GGAGGGTGGCGAGATCATCA+TGG | 0.563260 | 5.4:+17793464 | MS.gene070092:CDS |
| AGGTTACCATTAATGGAGAT+GGG | 0.564707 | 5.4:+17793331 | MS.gene070092:CDS |
| TACGCCAACAGGGTGTCTGT+TGG | 0.564868 | 5.4:+17794020 | MS.gene070092:CDS |
| AGAGAATGGTTTGACCAGGA+AGG | 0.566968 | 5.4:+17793093 | MS.gene070092:CDS |
| TAAGACCCATTGACTGGCAC+CGG | 0.569305 | 5.4:-17792265 | None:intergenic |
| AGATATTGGGATTATACTTG+GGG | 0.572799 | 5.4:-17792374 | None:intergenic |
| AGTGTTGAATTAACTGTATG+GGG | 0.577662 | 5.4:+17792898 | MS.gene070092:CDS |
| ATTATCAACTTTATCAAACT+CGG | 0.579996 | 5.4:-17794147 | None:intergenic |
| AACGGCTAAGCGAGAACTCA+GGG | 0.580930 | 5.4:+17792441 | MS.gene070092:CDS |
| GGAGATGTACAATCAGCTGC+TGG | 0.581552 | 5.4:+17792049 | MS.gene070092:CDS |
| AGGGTGTCTGTTGGATCAGG+TGG | 0.584100 | 5.4:+17794029 | MS.gene070092:CDS |
| AACTGTACTGAAAGCAGAGA+AGG | 0.584676 | 5.4:+17793638 | MS.gene070092:CDS |
| TCGCTGAAAATAGATTGACT+TGG | 0.584917 | 5.4:-17793126 | None:intergenic |
| CTATAACAATGCCCGAGGTG+AGG | 0.587915 | 5.4:+17792465 | MS.gene070092:CDS |
| CTTAAGTCTGAGAAAGCAGA+AGG | 0.587995 | 5.4:+17793711 | MS.gene070092:CDS |
| ATTTAGTGAAGAGAACCTTA+CGG | 0.589040 | 5.4:-17793557 | None:intergenic |
| AATCAACCTGAACAGTCTGA+TGG | 0.589455 | 5.4:+17793990 | MS.gene070092:CDS |
| GAAAATTCACAGTATTTGAA+CGG | 0.598419 | 5.4:+17792091 | MS.gene070092:CDS |
| GAGGGTGGCGAGATCATCAT+GGG | 0.599256 | 5.4:+17793465 | MS.gene070092:CDS |
| GAATAAACACTGCTAGCTGA+AGG | 0.601431 | 5.4:-17792187 | None:intergenic |
| TGATCACACTGGAATGACTT+GGG | 0.602012 | 5.4:+17793428 | MS.gene070092:CDS |
| CTACATGACATGTATGAACC+AGG | 0.602038 | 5.4:-17793918 | None:intergenic |
| AAAGTCTATCTTGTTTCAAG+GGG | 0.605100 | 5.4:+17792592 | MS.gene070092:CDS |
| GAGAATGGTTTGACCAGGAA+GGG | 0.605835 | 5.4:+17793094 | MS.gene070092:CDS |
| GGAGCATCATTTCTTCCCGT+AGG | 0.605992 | 5.4:-17792346 | None:intergenic |
| GAGTTATCATCGTCAAGACA+TGG | 0.606744 | 5.4:-17792697 | None:intergenic |
| CGAACATAAGACCCATTGAC+TGG | 0.607967 | 5.4:-17792271 | None:intergenic |
| TTTATAGGATTATATACTGG+TGG | 0.609635 | 5.4:-17793798 | None:intergenic |
| TGATCTCTTGATCATTAGGA+AGG | 0.611567 | 5.4:-17792648 | None:intergenic |
| ACTGAGAGAATGGTTTGACC+AGG | 0.616882 | 5.4:+17793089 | MS.gene070092:CDS |
| CAACCTGAACAGTCTGATGG+GGG | 0.617878 | 5.4:+17793993 | MS.gene070092:CDS |
| TTGCTAGCAAAAGCACAAGA+AGG | 0.618421 | 5.4:-17794237 | None:intergenic |
| AATGGTTTGACCAGGAAGGG+AGG | 0.620111 | 5.4:+17793097 | MS.gene070092:CDS |
| TATGGAAAGCAACAGCATTG+TGG | 0.620227 | 5.4:+17792768 | MS.gene070092:CDS |
| ATGGGACCCCAGCAAATCAA+GGG | 0.620842 | 5.4:+17793847 | MS.gene070092:CDS |
| ATCATAAAACTGATCAGCCA+CGG | 0.621833 | 5.4:-17792554 | None:intergenic |
| TGACTCACATCAGATTGTGC+AGG | 0.628551 | 5.4:-17792022 | None:intergenic |
| CGGAAATTGTAAATCTGCTG+GGG | 0.629297 | 5.4:-17792724 | None:intergenic |
| GGTTCTCTATTGGTGTACAT+AGG | 0.629884 | 5.4:-17792325 | None:intergenic |
| TCAACCTGAACAGTCTGATG+GGG | 0.633489 | 5.4:+17793992 | MS.gene070092:CDS |
| CATTAATGATAGACCAAATG+TGG | 0.633940 | 5.4:+17792132 | MS.gene070092:CDS |
| AATTCACAGTATTTGAACGG+TGG | 0.635714 | 5.4:+17792094 | MS.gene070092:CDS |
| AACCTGAACAGTCTGATGGG+GGG | 0.636864 | 5.4:+17793994 | MS.gene070092:CDS |
| TTCTACCAATAATTGGCTGG+TGG | 0.640568 | 5.4:-17793043 | None:intergenic |
| TACATGTCATGTAGCAACTG+TGG | 0.642138 | 5.4:+17793927 | MS.gene070092:CDS |
| CTAGCTGAAGGATTCACAGT+CGG | 0.647168 | 5.4:-17792175 | None:intergenic |
| AGCACAAGAAGGTCATCAGG+AGG | 0.647215 | 5.4:-17794226 | None:intergenic |
| GCAAAATATTTGCGACTCTG+GGG | 0.647962 | 5.4:+17792951 | MS.gene070092:CDS |
| ATACAGTTAATTCAACACTT+CGG | 0.648500 | 5.4:-17792894 | None:intergenic |
| TGTCGGTACATAGGCTGAGG+AGG | 0.649146 | 5.4:-17792295 | None:intergenic |
| TTTCAATGTCACCAATGGGA+CGG | 0.650355 | 5.4:-17792744 | None:intergenic |
| TGATCCAACAGACACCCTGT+TGG | 0.659476 | 5.4:-17794024 | None:intergenic |
| GGACCAGGGTGCCTTCCAAG+TGG | 0.662955 | 5.4:+17793765 | MS.gene070092:CDS |
| ATGCAGATACATGATCACAC+TGG | 0.663859 | 5.4:+17793417 | MS.gene070092:CDS |
| TACACCAATAGAGAACCTAC+GGG | 0.667006 | 5.4:+17792331 | MS.gene070092:CDS |
| ATGTCATGTAGCAACTGTGG+AGG | 0.670037 | 5.4:+17793930 | MS.gene070092:CDS |
| TATAACTGATGTGATATCAA+GGG | 0.673788 | 5.4:-17792671 | None:intergenic |
| CATTGTGGATGTGATTGCTG+TGG | 0.675524 | 5.4:+17792783 | MS.gene070092:CDS |
| TGTACATAGGAGATGGCTGT+CGG | 0.677597 | 5.4:-17792312 | None:intergenic |
| CTATCAACACAACTGGACCA+GGG | 0.680062 | 5.4:+17793751 | MS.gene070092:CDS |
| AGGGTCTATAACAATGCCCG+AGG | 0.697756 | 5.4:+17792460 | MS.gene070092:CDS |
| GTGTTGAATTAACTGTATGG+GGG | 0.715516 | 5.4:+17792899 | MS.gene070092:CDS |
| TATGCTGATAGGAATCATAG+GGG | 0.719538 | 5.4:+17794184 | MS.gene070092:CDS |
| ATGCTGATAGGAATCATAGG+GGG | 0.737640 | 5.4:+17794185 | MS.gene070092:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAAAGATGAAAATTTA+GGG | + | chr5.4:17793193-17793212 | MS.gene070092:CDS | 10.0% |
| !! | CAAATTAAAGATGAAAATTT+AGG | + | chr5.4:17793192-17793211 | MS.gene070092:CDS | 15.0% |
| !! | ATCAAAACTAAAAAACTAAC+AGG | - | chr5.4:17791804-17791823 | None:intergenic | 20.0% |
| !! | ATTATCAACTTTATCAAACT+CGG | - | chr5.4:17794150-17794169 | None:intergenic | 20.0% |
| !! | CTATTTATAGGATTATATAC+TGG | - | chr5.4:17793804-17793823 | None:intergenic | 20.0% |
| !! | TAGTTGAAGAATTTCATTAA+AGG | + | chr5.4:17791768-17791787 | MS.gene070092:intron | 20.0% |
| !!! | AGTATTTTCTTTTGATCTTT+TGG | + | chr5.4:17792492-17792511 | MS.gene070092:CDS | 20.0% |
| !!! | TTTAGTTTTGATATTGTTGA+AGG | + | chr5.4:17791812-17791831 | MS.gene070092:intron | 20.0% |
| ! | AACAAAAAGGTTACCATTAA+TGG | + | chr5.4:17793324-17793343 | MS.gene070092:CDS | 25.0% |
| ! | AGATAGGAAATGTAACAAAA+AGG | + | chr5.4:17793311-17793330 | MS.gene070092:CDS | 25.0% |
| ! | ATAAATAGCAACACTAATAC+TGG | + | chr5.4:17793816-17793835 | MS.gene070092:CDS | 25.0% |
| ! | ATACAGTTAATTCAACACTT+CGG | - | chr5.4:17792897-17792916 | None:intergenic | 25.0% |
| ! | GAAAATTCACAGTATTTGAA+CGG | + | chr5.4:17792091-17792110 | MS.gene070092:CDS | 25.0% |
| ! | TATAACTGATGTGATATCAA+GGG | - | chr5.4:17792674-17792693 | None:intergenic | 25.0% |
| ! | TTTATAGGATTATATACTGG+TGG | - | chr5.4:17793801-17793820 | None:intergenic | 25.0% |
| !! | AGAAAATGTAAATCTTTTGC+AGG | - | chr5.4:17793495-17793514 | None:intergenic | 25.0% |
| !! | GTTCAAGTTAAAAGTAAAAG+AGG | + | chr5.4:17793584-17793603 | MS.gene070092:CDS | 25.0% |
| !! | TAAAGTCTATCTTGTTTCAA+GGG | + | chr5.4:17792591-17792610 | MS.gene070092:CDS | 25.0% |
| !! | TTCTTTTGATCTTTTGGATT+CGG | + | chr5.4:17792498-17792517 | MS.gene070092:CDS | 25.0% |
| !! | TTTTATGATGTAACTGAAGT+TGG | + | chr5.4:17792568-17792587 | MS.gene070092:CDS | 25.0% |
| !!! | AAGTGTTGAATTAACTGTAT+GGG | + | chr5.4:17792897-17792916 | MS.gene070092:CDS | 25.0% |
| !!! | GTATTAGTGTTGCTATTTAT+AGG | - | chr5.4:17793816-17793835 | None:intergenic | 25.0% |
| AAGAAAAAAAACTGCTATGC+TGG | - | chr5.4:17793887-17793906 | None:intergenic | 30.0% | |
| AATATGCTGATAGGAATCAT+AGG | + | chr5.4:17794182-17794201 | MS.gene070092:CDS | 30.0% | |
| AATCAGGTTCTACCAATAAT+TGG | - | chr5.4:17793053-17793072 | None:intergenic | 30.0% | |
| AATTATCATCATTGTTGAGC+TGG | + | chr5.4:17791940-17791959 | MS.gene070092:intron | 30.0% | |
| ACTAATACTGGTAGAGATTA+TGG | + | chr5.4:17793828-17793847 | MS.gene070092:CDS | 30.0% | |
| AGATATTGGGATTATACTTG+GGG | - | chr5.4:17792377-17792396 | None:intergenic | 30.0% | |
| ATACTTTCAATGTCACCAAT+GGG | - | chr5.4:17792751-17792770 | None:intergenic | 30.0% | |
| ATATGCTGATAGGAATCATA+GGG | + | chr5.4:17794183-17794202 | MS.gene070092:CDS | 30.0% | |
| ATCTGAATCAAAATCTCTTC+TGG | + | chr5.4:17793674-17793693 | MS.gene070092:CDS | 30.0% | |
| ATGGATTCAAAGCAGATATT+GGG | - | chr5.4:17792390-17792409 | None:intergenic | 30.0% | |
| ATTGTCCACATATTCTGATA+TGG | - | chr5.4:17792409-17792428 | None:intergenic | 30.0% | |
| ATTTAGTGAAGAGAACCTTA+CGG | - | chr5.4:17793560-17793579 | None:intergenic | 30.0% | |
| CAGATATTGGGATTATACTT+GGG | - | chr5.4:17792378-17792397 | None:intergenic | 30.0% | |
| CATTAATGATAGACCAAATG+TGG | + | chr5.4:17792132-17792151 | MS.gene070092:CDS | 30.0% | |
| CTAATACTGGTAGAGATTAT+GGG | + | chr5.4:17793829-17793848 | MS.gene070092:CDS | 30.0% | |
| GACAATTAAAGCCAGAATAA+CGG | + | chr5.4:17792423-17792442 | MS.gene070092:CDS | 30.0% | |
| GCATCAATCATGAGAAAAAA+TGG | + | chr5.4:17792826-17792845 | MS.gene070092:CDS | 30.0% | |
| GGATGTTATACTTGACAAAT+GGG | + | chr5.4:17791961-17791980 | MS.gene070092:CDS | 30.0% | |
| GTATAACTGATGTGATATCA+AGG | - | chr5.4:17792675-17792694 | None:intergenic | 30.0% | |
| TATGGATTCAAAGCAGATAT+TGG | - | chr5.4:17792391-17792410 | None:intergenic | 30.0% | |
| TGAATCCATATCAGAATATG+TGG | + | chr5.4:17792401-17792420 | MS.gene070092:CDS | 30.0% | |
| TGGATGTTATACTTGACAAA+TGG | + | chr5.4:17791960-17791979 | MS.gene070092:CDS | 30.0% | |
| ! | AAAGTCTATCTTGTTTCAAG+GGG | + | chr5.4:17792592-17792611 | MS.gene070092:CDS | 30.0% |
| ! | AGTGTTGAATTAACTGTATG+GGG | + | chr5.4:17792898-17792917 | MS.gene070092:CDS | 30.0% |
| ! | GCAGATTTTACAACCAAAAT+TGG | - | chr5.4:17792982-17793001 | None:intergenic | 30.0% |
| ! | GTAAAGTCTATCTTGTTTCA+AGG | + | chr5.4:17792590-17792609 | MS.gene070092:CDS | 30.0% |
| ! | TGATTGATATTCTTTTGAGC+TGG | - | chr5.4:17792628-17792647 | None:intergenic | 30.0% |
| !! | GAAGTGTTGAATTAACTGTA+TGG | + | chr5.4:17792896-17792915 | MS.gene070092:CDS | 30.0% |
| !! | TGAAGGCTTTATTAACCAAT+CGG | + | chr5.4:17791829-17791848 | MS.gene070092:intron | 30.0% |
| !!! | AGCAGTTTTTTTTCTTCATC+AGG | + | chr5.4:17793891-17793910 | MS.gene070092:CDS | 30.0% |
| AAGGTTACCATTAATGGAGA+TGG | + | chr5.4:17793330-17793349 | MS.gene070092:CDS | 35.0% | |
| AATTCACAGTATTTGAACGG+TGG | + | chr5.4:17792094-17792113 | MS.gene070092:CDS | 35.0% | |
| ACGGAAATTGTAAATCTGCT+GGG | - | chr5.4:17792728-17792747 | None:intergenic | 35.0% | |
| ACTTCAATGGGAAGTCTATT+GGG | + | chr5.4:17793013-17793032 | MS.gene070092:CDS | 35.0% | |
| AGGTTACCATTAATGGAGAT+GGG | + | chr5.4:17793331-17793350 | MS.gene070092:CDS | 35.0% | |
| AGTGTTTATTCCAACACTTC+TGG | + | chr5.4:17792199-17792218 | MS.gene070092:CDS | 35.0% | |
| ATCATAAAACTGATCAGCCA+CGG | - | chr5.4:17792557-17792576 | None:intergenic | 35.0% | |
| ATTTACAATTTCCGTCCCAT+TGG | + | chr5.4:17792733-17792752 | MS.gene070092:CDS | 35.0% | |
| ATTTGCAGAAATCATCCGTA+AGG | + | chr5.4:17793542-17793561 | MS.gene070092:CDS | 35.0% | |
| CATACTTTCAATGTCACCAA+TGG | - | chr5.4:17792752-17792771 | None:intergenic | 35.0% | |
| CCAGAGTAAATGACTTCAAT+GGG | + | chr5.4:17793001-17793020 | MS.gene070092:CDS | 35.0% | |
| CCAGAGTAAATGCTTTCAAT+GGG | + | chr5.4:17794111-17794130 | MS.gene070092:CDS | 35.0% | |
| CTGTTGATGCTTGTGATTAT+AGG | + | chr5.4:17793382-17793401 | MS.gene070092:CDS | 35.0% | |
| GCAAATCATTTGTCAATCAC+TGG | - | chr5.4:17791902-17791921 | None:intergenic | 35.0% | |
| GCAGATATTGGGATTATACT+TGG | - | chr5.4:17792379-17792398 | None:intergenic | 35.0% | |
| GTGTTGAATTAACTGTATGG+GGG | + | chr5.4:17792899-17792918 | MS.gene070092:CDS | 35.0% | |
| TATGCTGATAGGAATCATAG+GGG | + | chr5.4:17794184-17794203 | MS.gene070092:CDS | 35.0% | |
| TCGCTGAAAATAGATTGACT+TGG | - | chr5.4:17793129-17793148 | None:intergenic | 35.0% | |
| TGATCTCTTGATCATTAGGA+AGG | - | chr5.4:17792651-17792670 | None:intergenic | 35.0% | |
| TGCAAAATATTTGCGACTCT+GGG | + | chr5.4:17792950-17792969 | MS.gene070092:CDS | 35.0% | |
| TTCCTATCTCCTATCATGAT+AGG | - | chr5.4:17793300-17793319 | None:intergenic | 35.0% | |
| TTTCTCATGATTGATGCTGT+AGG | - | chr5.4:17792823-17792842 | None:intergenic | 35.0% | |
| ! | AAAATACTTTTCCCTCACCT+CGG | - | chr5.4:17792480-17792499 | None:intergenic | 35.0% |
| ! | CATTGGTGACATTGAAAGTA+TGG | + | chr5.4:17792750-17792769 | MS.gene070092:CDS | 35.0% |
| ! | CGCTGAAAATAGATTGACTT+GGG | - | chr5.4:17793128-17793147 | None:intergenic | 35.0% |
| ! | TTTGATCTTTTGGATTCGGA+CGG | + | chr5.4:17792502-17792521 | MS.gene070092:CDS | 35.0% |
| !! | CAGGTTGATTTCTAAGACTT+AGG | - | chr5.4:17793980-17793999 | None:intergenic | 35.0% |
| !! | GTTGATAGCAGAGTTAATAG+TGG | - | chr5.4:17793739-17793758 | None:intergenic | 35.0% |
| !! | GTTTTGGTAAAAGTGAAGTG+CGG | + | chr5.4:17793157-17793176 | MS.gene070092:CDS | 35.0% |
| !! | TTCAGCGAATCATCTAGTTT+TGG | + | chr5.4:17793141-17793160 | MS.gene070092:CDS | 35.0% |
| AACTCTGCTATCAACACAAC+TGG | + | chr5.4:17793744-17793763 | MS.gene070092:CDS | 40.0% | |
| AACTGTACTGAAAGCAGAGA+AGG | + | chr5.4:17793638-17793657 | MS.gene070092:CDS | 40.0% | |
| AATCAACCTGAACAGTCTGA+TGG | + | chr5.4:17793990-17794009 | MS.gene070092:CDS | 40.0% | |
| ACAGCTTGTCCTATCATGAT+AGG | + | chr5.4:17793288-17793307 | MS.gene070092:CDS | 40.0% | |
| AGGGTGATCTCTTGATCATT+AGG | - | chr5.4:17792655-17792674 | None:intergenic | 40.0% | |
| AGGTTCTACCAATAATTGGC+TGG | - | chr5.4:17793049-17793068 | None:intergenic | 40.0% | |
| ATAGGAATCATAGGGGGATT+TGG | + | chr5.4:17794191-17794210 | MS.gene070092:CDS | 40.0% | |
| ATCAACCTGAACAGTCTGAT+GGG | + | chr5.4:17793991-17794010 | MS.gene070092:CDS | 40.0% | |
| ATCATTAATGCCAGCTGCAT+AGG | - | chr5.4:17792122-17792141 | None:intergenic | 40.0% | |
| ATGATCACACTGGAATGACT+TGG | + | chr5.4:17793427-17793446 | MS.gene070092:CDS | 40.0% | |
| ATGCAGATACATGATCACAC+TGG | + | chr5.4:17793417-17793436 | MS.gene070092:CDS | 40.0% | |
| ATGCTGATAGGAATCATAGG+GGG | + | chr5.4:17794185-17794204 | MS.gene070092:CDS | 40.0% | |
| ATGGCAGCATATTGGACATT+GGG | + | chr5.4:17794073-17794092 | MS.gene070092:CDS | 40.0% | |
| CCATTAATGGAGATGGGAAA+TGG | + | chr5.4:17793337-17793356 | MS.gene070092:CDS | 40.0% | |
| CCATTTCCCATCTCCATTAA+TGG | - | chr5.4:17793340-17793359 | None:intergenic | 40.0% | |
| CCCATTGAAGTCATTTACTC+TGG | - | chr5.4:17793004-17793023 | None:intergenic | 40.0% | |
| CGGAAATTGTAAATCTGCTG+GGG | - | chr5.4:17792727-17792746 | None:intergenic | 40.0% | |
| CTACATGACATGTATGAACC+AGG | - | chr5.4:17793921-17793940 | None:intergenic | 40.0% | |
| CTATTGGTGTACATAGGAGA+TGG | - | chr5.4:17792322-17792341 | None:intergenic | 40.0% | |
| CTGCAAAATATTTGCGACTC+TGG | + | chr5.4:17792949-17792968 | MS.gene070092:CDS | 40.0% | |
| CTTAAGTCTGAGAAAGCAGA+AGG | + | chr5.4:17793711-17793730 | MS.gene070092:CDS | 40.0% | |
| CTTCGGGTAATTGCTATAGA+TGG | + | chr5.4:17794054-17794073 | MS.gene070092:CDS | 40.0% | |
| CTTGACAAATGGGACTTGAT+TGG | + | chr5.4:17791971-17791990 | MS.gene070092:CDS | 40.0% | |
| CTTTCAATGGGAAGTCTGTT+GGG | + | chr5.4:17794123-17794142 | MS.gene070092:CDS | 40.0% | |
| GAATAAACACTGCTAGCTGA+AGG | - | chr5.4:17792190-17792209 | None:intergenic | 40.0% | |
| GACGGAAATTGTAAATCTGC+TGG | - | chr5.4:17792729-17792748 | None:intergenic | 40.0% | |
| GACTTCAATGGGAAGTCTAT+TGG | + | chr5.4:17793012-17793031 | MS.gene070092:CDS | 40.0% | |
| GAGTTATCATCGTCAAGACA+TGG | - | chr5.4:17792700-17792719 | None:intergenic | 40.0% | |
| GCAAAATATTTGCGACTCTG+GGG | + | chr5.4:17792951-17792970 | MS.gene070092:CDS | 40.0% | |
| GCAAGATACAGTACATCTGA+TGG | + | chr5.4:17792226-17792245 | MS.gene070092:CDS | 40.0% | |
| GCACAGATAGATATCCAATC+AGG | - | chr5.4:17793231-17793250 | None:intergenic | 40.0% | |
| GCCAGAGTAAATGACTTCAA+TGG | + | chr5.4:17793000-17793019 | MS.gene070092:CDS | 40.0% | |
| GCCAGAGTAAATGCTTTCAA+TGG | + | chr5.4:17794110-17794129 | MS.gene070092:CDS | 40.0% | |
| GGTTCTCTATTGGTGTACAT+AGG | - | chr5.4:17792328-17792347 | None:intergenic | 40.0% | |
| GTACACCAATAGAGAACCTA+CGG | + | chr5.4:17792330-17792349 | MS.gene070092:CDS | 40.0% | |
| GTAGTAAAACTTCCTCCGAT+TGG | - | chr5.4:17791847-17791866 | None:intergenic | 40.0% | |
| GTCCTATCATGATAGGAGAT+AGG | + | chr5.4:17793295-17793314 | MS.gene070092:CDS | 40.0% | |
| TACACCAATAGAGAACCTAC+GGG | + | chr5.4:17792331-17792350 | MS.gene070092:CDS | 40.0% | |
| TACATGTCATGTAGCAACTG+TGG | + | chr5.4:17793927-17793946 | MS.gene070092:CDS | 40.0% | |
| TATGGAAAGCAACAGCATTG+TGG | + | chr5.4:17792768-17792787 | MS.gene070092:CDS | 40.0% | |
| TGATCACACTGGAATGACTT+GGG | + | chr5.4:17793428-17793447 | MS.gene070092:CDS | 40.0% | |
| TGCGACACAAATATGCTGAT+AGG | + | chr5.4:17794173-17794192 | MS.gene070092:CDS | 40.0% | |
| TGCTATAGATGGCAGCATAT+TGG | + | chr5.4:17794065-17794084 | MS.gene070092:CDS | 40.0% | |
| TGGAGCCAATTTGAATAGAC+CGG | + | chr5.4:17792246-17792265 | MS.gene070092:CDS | 40.0% | |
| TTCTACCAATAATTGGCTGG+TGG | - | chr5.4:17793046-17793065 | None:intergenic | 40.0% | |
| TTTCAATGTCACCAATGGGA+CGG | - | chr5.4:17792747-17792766 | None:intergenic | 40.0% | |
| ! | AAAAGCACAAGAAGGTCATC+AGG | - | chr5.4:17794232-17794251 | None:intergenic | 40.0% |
| ! | AAATACTTTTCCCTCACCTC+GGG | - | chr5.4:17792479-17792498 | None:intergenic | 40.0% |
| ! | AGGCTTTTACACTGAGAGAA+TGG | + | chr5.4:17793079-17793098 | MS.gene070092:CDS | 40.0% |
| ! | ATGGGGGAGTTTTTGCAATA+CGG | + | chr5.4:17792915-17792934 | MS.gene070092:CDS | 40.0% |
| ! | GTAAAAGCCTCTGGAAAATC+AGG | - | chr5.4:17793069-17793088 | None:intergenic | 40.0% |
| !! | AGGCTTTATTAACCAATCGG+AGG | + | chr5.4:17791832-17791851 | MS.gene070092:intron | 40.0% |
| !! | ATCATAGGGGGATTTGGTTT+TGG | + | chr5.4:17794197-17794216 | MS.gene070092:CDS | 40.0% |
| !! | CCCATTGAAAGCATTTACTC+TGG | - | chr5.4:17794114-17794133 | None:intergenic | 40.0% |
| !! | TTGAAAGCATTTACTCTGGC+AGG | - | chr5.4:17794110-17794129 | None:intergenic | 40.0% |
| AAATGTGGCTGTGCCATCTA+TGG | + | chr5.4:17792147-17792166 | MS.gene070092:CDS | 45.0% | |
| ACTGAGAGAATGGTTTGACC+AGG | + | chr5.4:17793089-17793108 | MS.gene070092:CDS | 45.0% | |
| AGAGAATGGTTTGACCAGGA+AGG | + | chr5.4:17793093-17793112 | MS.gene070092:CDS | 45.0% | |
| ATAGATGGCACAGCCACATT+TGG | - | chr5.4:17792148-17792167 | None:intergenic | 45.0% | |
| ATGGGAAATGGCGTTGTGTA+AGG | + | chr5.4:17793349-17793368 | MS.gene070092:CDS | 45.0% | |
| ATGTCATGTAGCAACTGTGG+AGG | + | chr5.4:17793930-17793949 | MS.gene070092:CDS | 45.0% | |
| ATTCGGACGGTGGAGAAATA+CGG | + | chr5.4:17792515-17792534 | MS.gene070092:CDS | 45.0% | |
| ATTGGGATTATACTTGGGGC+TGG | - | chr5.4:17792373-17792392 | None:intergenic | 45.0% | |
| CAATAATTGGCTGGTGGCAA+TGG | - | chr5.4:17793040-17793059 | None:intergenic | 45.0% | |
| CAATCAGCTGCTGGTCAATT+AGG | + | chr5.4:17792058-17792077 | MS.gene070092:CDS | 45.0% | |
| CAATCTGATGTGAGTCATGC+AGG | + | chr5.4:17792028-17792047 | MS.gene070092:CDS | 45.0% | |
| CATTGCCACCAGCCAATTAT+TGG | + | chr5.4:17793038-17793057 | MS.gene070092:CDS | 45.0% | |
| CATTGTGGATGTGATTGCTG+TGG | + | chr5.4:17792783-17792802 | MS.gene070092:CDS | 45.0% | |
| CGAACATAAGACCCATTGAC+TGG | - | chr5.4:17792274-17792293 | None:intergenic | 45.0% | |
| CTAGCTGAAGGATTCACAGT+CGG | - | chr5.4:17792178-17792197 | None:intergenic | 45.0% | |
| CTATCAACACAACTGGACCA+GGG | + | chr5.4:17793751-17793770 | MS.gene070092:CDS | 45.0% | |
| CTCCAGTTGAAAGACATGTC+TGG | + | chr5.4:17792871-17792890 | MS.gene070092:CDS | 45.0% | |
| CTTGATTGGAAAACCTGTCC+CGG | + | chr5.4:17791985-17792004 | MS.gene070092:CDS | 45.0% | |
| GAGAATGGTTTGACCAGGAA+GGG | + | chr5.4:17793094-17793113 | MS.gene070092:CDS | 45.0% | |
| GATGGCAGCATATTGGACAT+TGG | + | chr5.4:17794072-17794091 | MS.gene070092:CDS | 45.0% | |
| GCAAATCAAGGGAGACAGTA+TGG | + | chr5.4:17793858-17793877 | MS.gene070092:CDS | 45.0% | |
| GCTTTCAATGGGAAGTCTGT+TGG | + | chr5.4:17794122-17794141 | MS.gene070092:CDS | 45.0% | |
| TATAACAATGCCCGAGGTGA+GGG | + | chr5.4:17792466-17792485 | MS.gene070092:CDS | 45.0% | |
| TCAACCTGAACAGTCTGATG+GGG | + | chr5.4:17793992-17794011 | MS.gene070092:CDS | 45.0% | |
| TCTCTCAGTGTAAAAGCCTC+TGG | - | chr5.4:17793078-17793097 | None:intergenic | 45.0% | |
| TCTTCCCGTAGGTTCTCTAT+TGG | - | chr5.4:17792338-17792357 | None:intergenic | 45.0% | |
| TGACTCACATCAGATTGTGC+AGG | - | chr5.4:17792025-17792044 | None:intergenic | 45.0% | |
| TGTACATAGGAGATGGCTGT+CGG | - | chr5.4:17792315-17792334 | None:intergenic | 45.0% | |
| TTCTCGCTTAGCCGTTATTC+TGG | - | chr5.4:17792437-17792456 | None:intergenic | 45.0% | |
| TTGGGATTATACTTGGGGCT+GGG | - | chr5.4:17792372-17792391 | None:intergenic | 45.0% | |
| TTTGTCAATCACTGGCACAG+AGG | - | chr5.4:17791894-17791913 | None:intergenic | 45.0% | |
| ! | GATTGTGCAGGTGCTTCTTT+TGG | - | chr5.4:17792013-17792032 | None:intergenic | 45.0% |
| ! | GGGAGTTTTTGCAATACGGA+AGG | + | chr5.4:17792919-17792938 | MS.gene070092:CDS | 45.0% |
| ! | GGTAGAACCTGATTTTCCAG+AGG | + | chr5.4:17793059-17793078 | MS.gene070092:CDS | 45.0% |
| ! | TCTTGCAGATCCAGAAGTGT+TGG | - | chr5.4:17792212-17792231 | None:intergenic | 45.0% |
| ! | TTTTCTTCATCAGGTGCTCC+TGG | + | chr5.4:17793900-17793919 | MS.gene070092:CDS | 45.0% |
| !! | ACTGTCTCCCTTGATTTGCT+GGG | - | chr5.4:17793857-17793876 | None:intergenic | 45.0% |
| !! | GACTTGGGTTACTGCTTTTC+AGG | + | chr5.4:17793443-17793462 | MS.gene070092:CDS | 45.0% |
| !! | TACTGTCTCCCTTGATTTGC+TGG | - | chr5.4:17793858-17793877 | None:intergenic | 45.0% |
| !! | TGGCACCGGTCTATTCAAAT+TGG | - | chr5.4:17792254-17792273 | None:intergenic | 45.0% |
| !! | TGGGTTACTGCTTTTCAGGA+GGG | + | chr5.4:17793447-17793466 | MS.gene070092:CDS | 45.0% |
| !! | TTGGGTTACTGCTTTTCAGG+AGG | + | chr5.4:17793446-17793465 | MS.gene070092:CDS | 45.0% |
| !!! | CTCTGGGGCATTTCCAATTT+TGG | + | chr5.4:17792966-17792985 | MS.gene070092:CDS | 45.0% |
| AACCTGAACAGTCTGATGGG+GGG | + | chr5.4:17793994-17794013 | MS.gene070092:CDS | 50.0% | |
| AACGGCTAAGCGAGAACTCA+GGG | + | chr5.4:17792441-17792460 | MS.gene070092:CDS | 50.0% | |
| AATGGTTTGACCAGGAAGGG+AGG | + | chr5.4:17793097-17793116 | MS.gene070092:CDS | 50.0% | |
| ACAGTCGGACGATCCATAGA+TGG | - | chr5.4:17792163-17792182 | None:intergenic | 50.0% | |
| AGCACAAGAAGGTCATCAGG+AGG | - | chr5.4:17794229-17794248 | None:intergenic | 50.0% | |
| AGGGTCTATAACAATGCCCG+AGG | + | chr5.4:17792460-17792479 | MS.gene070092:CDS | 50.0% | |
| ATGGGACCCCAGCAAATCAA+GGG | + | chr5.4:17793847-17793866 | MS.gene070092:CDS | 50.0% | |
| CAACCTGAACAGTCTGATGG+GGG | + | chr5.4:17793993-17794012 | MS.gene070092:CDS | 50.0% | |
| CTATAACAATGCCCGAGGTG+AGG | + | chr5.4:17792465-17792484 | MS.gene070092:CDS | 50.0% | |
| GCTATCAACACAACTGGACC+AGG | + | chr5.4:17793750-17793769 | MS.gene070092:CDS | 50.0% | |
| GGAGATGTACAATCAGCTGC+TGG | + | chr5.4:17792049-17792068 | MS.gene070092:CDS | 50.0% | |
| GGCCAGACATGTCTTTCAAC+TGG | - | chr5.4:17792876-17792895 | None:intergenic | 50.0% | |
| TAACGGCTAAGCGAGAACTC+AGG | + | chr5.4:17792440-17792459 | MS.gene070092:CDS | 50.0% | |
| TATGGGACCCCAGCAAATCA+AGG | + | chr5.4:17793846-17793865 | MS.gene070092:CDS | 50.0% | |
| TGATCCAACAGACACCCTGT+TGG | - | chr5.4:17794027-17794046 | None:intergenic | 50.0% | |
| TGGGATTATACTTGGGGCTG+GGG | - | chr5.4:17792371-17792390 | None:intergenic | 50.0% | |
| TGTTGGATCAGGTGGTGCTT+CGG | + | chr5.4:17794037-17794056 | MS.gene070092:CDS | 50.0% | |
| TTCGGACGGTGGAGAAATAC+GGG | + | chr5.4:17792516-17792535 | MS.gene070092:CDS | 50.0% | |
| ! | AACAGGGTGTCTGTTGGATC+AGG | + | chr5.4:17794026-17794045 | MS.gene070092:CDS | 50.0% |
| ! | AATAGACCGGTGCCAGTCAA+TGG | + | chr5.4:17792259-17792278 | MS.gene070092:CDS | 50.0% |
| ! | ATAGACCGGTGCCAGTCAAT+GGG | + | chr5.4:17792260-17792279 | MS.gene070092:CDS | 50.0% |
| ! | GATCTTTTGGATTCGGACGG+TGG | + | chr5.4:17792505-17792524 | MS.gene070092:CDS | 50.0% |
| ! | GGACTTCTGAGAAGCCTGAT+TGG | + | chr5.4:17793214-17793233 | MS.gene070092:CDS | 50.0% |
| ! | GGAGCATCATTTCTTCCCGT+AGG | - | chr5.4:17792349-17792368 | None:intergenic | 50.0% |
| ! | GGCAACTTGCTTTAATGCCG+TGG | + | chr5.4:17792537-17792556 | MS.gene070092:CDS | 50.0% |
| ! | TAAGACCCATTGACTGGCAC+CGG | - | chr5.4:17792268-17792287 | None:intergenic | 50.0% |
| !! | CTGTCTCCCTTGATTTGCTG+GGG | - | chr5.4:17793856-17793875 | None:intergenic | 50.0% |
| !! | GTTACTGCTTTTCAGGAGGG+TGG | + | chr5.4:17793450-17793469 | MS.gene070092:CDS | 50.0% |
| AACGGTGGTTCCTATGCAGC+TGG | + | chr5.4:17792109-17792128 | MS.gene070092:CDS | 55.0% | |
| ACCTGAACAGTCTGATGGGG+GGG | + | chr5.4:17793995-17794014 | MS.gene070092:CDS | 55.0% | |
| GAGGGTGGCGAGATCATCAT+GGG | + | chr5.4:17793465-17793484 | MS.gene070092:CDS | 55.0% | |
| GGAGATGGCTGTCGGTACAT+AGG | - | chr5.4:17792307-17792326 | None:intergenic | 55.0% | |
| GGGATTATACTTGGGGCTGG+GGG | - | chr5.4:17792370-17792389 | None:intergenic | 55.0% | |
| GTTGGATCAGGTGGTGCTTC+GGG | + | chr5.4:17794038-17794057 | MS.gene070092:CDS | 55.0% | |
| TGTAGCAACTGTGGAGGCTC+TGG | + | chr5.4:17793936-17793955 | MS.gene070092:CDS | 55.0% | |
| TGTCGGTACATAGGCTGAGG+AGG | - | chr5.4:17792298-17792317 | None:intergenic | 55.0% | |
| TTGGGACATTCCTCCCTTCC+TGG | - | chr5.4:17793110-17793129 | None:intergenic | 55.0% | |
| ! | AGGGTGTCTGTTGGATCAGG+TGG | + | chr5.4:17794029-17794048 | MS.gene070092:CDS | 55.0% |
| ! | GCGTAGCTTGTCCACTTGGA+AGG | - | chr5.4:17793779-17793798 | None:intergenic | 55.0% |
| ! | TACGCCAACAGGGTGTCTGT+TGG | + | chr5.4:17794020-17794039 | MS.gene070092:CDS | 55.0% |
| !! | GCAGGTGCTTCTTTTGGTGC+CGG | - | chr5.4:17792007-17792026 | None:intergenic | 55.0% |
| !!! | CAGGTGCTTCTTTTGGTGCC+GGG | - | chr5.4:17792006-17792025 | None:intergenic | 55.0% |
| ACCCCCCCATCAGACTGTTC+AGG | - | chr5.4:17793999-17794018 | None:intergenic | 60.0% | |
| GGAGGGTGGCGAGATCATCA+TGG | + | chr5.4:17793464-17793483 | MS.gene070092:CDS | 60.0% | |
| GGCTGTCGGTACATAGGCTG+AGG | - | chr5.4:17792301-17792320 | None:intergenic | 60.0% | |
| ! | GGTGGCGTAGCTTGTCCACT+TGG | - | chr5.4:17793783-17793802 | None:intergenic | 60.0% |
| !! | TGTCCACTTGGAAGGCACCC+TGG | - | chr5.4:17793771-17793790 | None:intergenic | 60.0% |
| !!! | GCTTCTTTTGGTGCCGGGAC+AGG | - | chr5.4:17792001-17792020 | None:intergenic | 60.0% |
| ATGGGGGGGTCTACGCCAAC+AGG | + | chr5.4:17794009-17794028 | MS.gene070092:CDS | 65.0% | |
| TGGGGGGGTCTACGCCAACA+GGG | + | chr5.4:17794010-17794029 | MS.gene070092:CDS | 65.0% | |
| ! | GGACCAGGGTGCCTTCCAAG+TGG | + | chr5.4:17793765-17793784 | MS.gene070092:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 17791745 | 17794256 | 17791745 | ID=MS.gene070092 |
| chr5.4 | mRNA | 17791745 | 17794256 | 17791745 | ID=MS.gene070092.t1;Parent=MS.gene070092 |
| chr5.4 | exon | 17791745 | 17791747 | 17791745 | ID=MS.gene070092.t1.exon1;Parent=MS.gene070092.t1 |
| chr5.4 | CDS | 17791745 | 17791747 | 17791745 | ID=cds.MS.gene070092.t1;Parent=MS.gene070092.t1 |
| chr5.4 | exon | 17791959 | 17794256 | 17791959 | ID=MS.gene070092.t1.exon2;Parent=MS.gene070092.t1 |
| chr5.4 | CDS | 17791959 | 17794256 | 17791959 | ID=cds.MS.gene070092.t1;Parent=MS.gene070092.t1 |
| Gene Sequence |
| Protein sequence |
