AlfalfaGEDB | MS.gene070489

M. sativa cultivar XinJiangDaYe / MS.gene070489

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0110165 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03789.16 PF03790.16 PF03791.16 PF05920.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070489.t1	XP_003616932.3	100	248	0	0	1	248	65	312	3.80E-138	500.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070489.t1	P46608	68.2	255	69	6	1	247	129	379	3.0e-91	336.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070489.t1	D4NXR4	100.0	248	0	0	1	248	51	298	2.7e-138	500.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene070489.t1	TF	HB-KNOX

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050020	MS.gene070489	0.818336	2.07E-52	-1.69E-46
MS.gene050298	MS.gene070489	0.806242	9.05E-50	-1.69E-46
MS.gene050563	MS.gene070489	0.897679	1.11E-76	-1.69E-46
MS.gene050584	MS.gene070489	0.835956	1.24E-56	-1.69E-46
MS.gene050585	MS.gene070489	0.841277	5.24E-58	-1.69E-46
MS.gene050587	MS.gene070489	0.825982	3.48E-54	-1.69E-46
MS.gene051789	MS.gene070489	0.820396	7.01E-53	-1.69E-46
MS.gene052142	MS.gene070489	0.839621	1.42E-57	-1.69E-46
MS.gene052698	MS.gene070489	0.845959	2.93E-59	-1.69E-46
MS.gene053383	MS.gene070489	0.899129	2.69E-77	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070489.t1	MTR_5g085860	100.000	248	0	0	1	248	51	298	0.0	520
MS.gene070489.t1	MTR_2g024390	65.873	252	71	4	1	242	122	368	3.18e-108	317
MS.gene070489.t1	MTR_5g033720	54.274	234	92	4	2	225	78	306	1.16e-76	234
MS.gene070489.t1	MTR_1g017080	55.508	236	91	3	1	226	124	355	5.22e-75	233
MS.gene070489.t1	MTR_1g084060	49.590	244	98	4	2	228	25	260	1.50e-72	223
MS.gene070489.t1	MTR_1g084060	49.590	244	98	4	2	228	25	260	3.31e-72	223
MS.gene070489.t1	MTR_2g461240	30.894	246	132	4	1	213	99	339	5.22e-34	125
MS.gene070489.t1	MTR_3g106400	29.388	245	141	4	1	213	111	355	8.97e-34	125
MS.gene070489.t1	MTR_3g106400	29.388	245	141	4	1	213	111	355	9.23e-34	125
MS.gene070489.t1	MTR_1g012960	31.276	243	137	4	1	213	178	420	9.70e-34	126

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070489.t1	AT1G62360	66.148	257	69	4	1	244	126	377	4.06e-107	315
MS.gene070489.t1	AT4G08150	55.187	241	93	3	1	229	139	376	6.37e-77	238
MS.gene070489.t1	AT1G23380	52.361	233	100	4	3	228	92	320	2.80e-74	229
MS.gene070489.t1	AT1G70510	51.064	235	102	3	2	228	75	304	1.28e-73	227
MS.gene070489.t1	AT1G23380	51.915	235	100	5	3	228	92	322	2.89e-72	224
MS.gene070489.t1	AT1G70510	50.209	239	102	4	2	228	75	308	2.32e-71	221
MS.gene070489.t1	AT5G25220	30.833	240	139	5	1	213	164	403	1.63e-35	131
MS.gene070489.t1	AT5G25220	30.833	240	139	5	1	213	164	403	2.06e-35	130
MS.gene070489.t1	AT5G11060	35.366	246	120	9	1	213	128	367	6.57e-35	129
MS.gene070489.t1	AT1G62990	30.081	246	133	5	2	213	35	275	8.23e-34	124

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Find 54 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCATGGCTTCTTTGAA+GGG	0.505700	5.4:+67903207	None:intergenic
AAAGAATGGAAAGTTACCAA+AGG	0.641055	5.4:-67900921	MS.gene070489:CDS
AACAACCTAGATACTACTCA+AGG	0.648557	5.4:-67901028	MS.gene070489:CDS
AACTACTTGATTGGTGGAGC+AGG	0.476464	5.4:-67900886	MS.gene070489:CDS
AAGAATTGAGTCTCAGCTCA+AGG	0.557965	5.4:-67903178	MS.gene070489:CDS
AAGCTAGCCACCACTTCAGG+AGG	0.647427	5.4:+67903381	None:intergenic
AATGGCTCTTCAGGAAGGAC+AGG	0.539828	5.4:-67903327	MS.gene070489:CDS
AATTCTTGAAAGGAAAAGCA+TGG	0.577216	5.4:+67903194	None:intergenic
ACGCCACTGGAAGCCTTCTG+AGG	0.619253	5.4:-67899936	MS.gene070489:CDS
AGAATAGTTACCGATGGGTA+AGG	0.537725	5.4:+67900851	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATGCCTTCAAAACATC+CGG	+	chr5.4:67901168-67901187	None:intergenic	30.0%
AAAGAATGGAAAGTTACCAA+AGG	-	chr5.4:67902669-67902688	MS.gene070489:intron	30.0%
AAATCCATCAAGATTGCATT+GGG	+	chr5.4:67901145-67901164	None:intergenic	30.0%
AATTCTTGAAAGGAAAAGCA+TGG	+	chr5.4:67900399-67900418	None:intergenic	30.0%
ACATTGAATGAGATTTAAGG+AGG	+	chr5.4:67902297-67902316	None:intergenic	30.0%
ACCCATATGAAAATCAACTA+AGG	+	chr5.4:67901548-67901567	None:intergenic	30.0%
ATGATAGATTACTTCCTATG+GGG	-	chr5.4:67900865-67900884	MS.gene070489:CDS	30.0%
ATGATATTCACACAAACACT+AGG	+	chr5.4:67901241-67901260	None:intergenic	30.0%
ATTTCTTAATCAATGCACAG+GGG	-	chr5.4:67903211-67903230	MS.gene070489:CDS	30.0%
GAACCATGTAAATGAAGTTA+AGG	+	chr5.4:67901300-67901319	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	67899841	67903771	67899841	ID=MS.gene070489
chr5.4	mRNA	67899841	67903771	67899841	ID=MS.gene070489.t1;Parent=MS.gene070489
chr5.4	exon	67903718	67903771	67903718	ID=MS.gene070489.t1.exon1;Parent=MS.gene070489.t1
chr5.4	CDS	67903718	67903771	67903718	ID=cds.MS.gene070489.t1;Parent=MS.gene070489.t1
chr5.4	exon	67903154	67903412	67903154	ID=MS.gene070489.t1.exon2;Parent=MS.gene070489.t1
chr5.4	CDS	67903154	67903412	67903154	ID=cds.MS.gene070489.t1;Parent=MS.gene070489.t1
chr5.4	exon	67900862	67901097	67900862	ID=MS.gene070489.t1.exon3;Parent=MS.gene070489.t1
chr5.4	CDS	67900862	67901097	67900862	ID=cds.MS.gene070489.t1;Parent=MS.gene070489.t1
chr5.4	exon	67899841	67900038	67899841	ID=MS.gene070489.t1.exon4;Parent=MS.gene070489.t1
chr5.4	CDS	67899841	67900038	67899841	ID=cds.MS.gene070489.t1;Parent=MS.gene070489.t1

Gene Sequence

>MS.gene070489

ATGGCTCATCCTCTCTTTCCTCGTCTCTTGTCCTCTTACCTCAATTGCTTGAAGGTCCTGAACTTCAAACTCTCACACACACTTAGCTTTTTCTTGTAAAGACACATATTTGTGATTTAGTTAGCTAAATATGAACAAATCACTATATTGTTTTGCTATACAATGTTTAGTATAAAGTATTGTGCATACATGTGTATAACTTGATATATATGATCATGCACTCTTTTAAAAAAGAATGTAATAAGATAAAATTTACTCAAGCCACAAAATGTTTGTTTTTGAGATTTTTTTTTTAAACTTTATGGATTTAAATCAAGTTTTCGCTTGTTTTGATGGTTTAAGTGTGATTTTTTTTGCAGGTTGGAGCACCTCCTGAAGTGGTGGCTAGCTTAGAGGAGTCATGTGCAAAATGTGAAATATTGAATGGCTCTTCAGGAAGGACAGGAAGTAGTAGTTCTTGTATAGGTGAAGATCCAGGTTTGGATCAGTTCATGGAGGCATATTGTGAGATGCTTATCAAGTATGAGCAAGAACTCACTAAACCCTTCAAAGAAGCCATGCTTTTCCTTTCAAGAATTGAGTCTCAGCTCAAGGCTGTTGCTGTTTCAACTGACTTTGGTGATTACCCTTAAATTATATTATCTTCATGACCATTATCCTTGGAAAAGTTTATTAACATTAGAAGTAAATATTCATTTTAACTGGAAAATAATGATAACCACACCTCTAGTAGTTCAATTATCACCCCCCCTAAAAACCTAGAAAAGAGAAAAAAAGAATGGTCTATGTGTTTTTTTGGTAAGTGAGTTCTTTTCGTGTTAACCCTCTAGTTACTAGGGCAGGGGGCCCTGGTAATCCAGAGTTGGCCGCGAGGTAAGTATAATATGACCAAGAATTAGTGAGATGGCCCTTTTTTATCGTAAGTAAATAGTGTGATTAGAGTTTTAAAGGAAAAAATATATATTTTGAAATTGTGTTTTTAACATGGATCCAAGGTGTTTGAACTAGGTTAAAAGGTTTGGAAATGATAGATTACTTCCTATGGGGAAATTAAGTAAAATGAGGTTTTGGTTTAACATTCAAAAGATTTACAGATTGTTTATGATTTAATTCACATGCGTTGTTTGTCTGTGTAAATAATTTTTATACCAACAATCAATCGTAGTTGTCAAATTATCAAAAACACAATTGAATTTTATCTTAACTATGTCTAAAGTAATTTACATGGATGATTGTGATGTGTATGACAGTATAATTTTTTTGCACAAATGGGAAAATTAACCTCAATTTTTATTCAAATTCCCAATGCAATCTTGATGGATTTCCGGATGTTTTGAAGGCATTTTTGTTTTTCCTTTCATGTGTGACCTTGGTTATGTTCAATTTTGTTTCACAGACCTAGTGTTTGTGTGAATATCATTCCTTGTGTGTTAGTTCTTCTTTCATCTTTTGAATTCCTTAACTTCATTTACATGGTTCACTTTGTTAACTGTTCTTTAATTGTTCTTTAATTAAATTAAACTTGGTGAAAAAGGAAACCATGTCTTGTCATCCTTTGTCGTATGTTTTCCTTAATTCGTTCTCTATAAAGTTTAATTCTCAAAACTAAGGTAAATTTTTCATTTGCATGGTTATTGTTATTTACCCTCTTTTGTAGTAGTTTAGTTTCTAGTGGTGGAGGCAGGGGTTACATTTAAAAATCTGCCTTAGTTGATTTTCATATGGGTGATTGAAAAGTCTTCTGCTAATGATAGTTAACTATTTGAAATTATCCTTAAAAAAAAAAACTATTTGAAATTATCTTTTTTTAATAATACCACTAAAGAAGTTGAAAGTCCCATTTAATGATAGGAAAGAACTCATCAATTGACAAAGTCTTTTGGCAGATTCTTGTCATTCTTTAGATGATGCATTCCATTTGTTAATTTCAATATAATATACTTAAATGCTTCATTTTTACACATGGGCTTCAAACTCACTTTTAAAAGTAAGCTCAAATGATGGTGTCAAATCCAAATACATAAATATTTCACAACTTAGGGGATGATTGGCAATGTGGGACACGAGTGGATTGGTAACCACTTCTTCATTAAGAATCTTATGGCATAAGATATACAAGTCTTATAATATATGATGCTCAACATTATTCTTTTATCAAATGTAGGGTTTCTCACTCACACTTGACACAAACAATTACTTACAAGCATTCCTCACACTAATGTGGGACACAAATGAAACTTTAGTACATTAGTTGTTGTTGGAAGAAATCTATAAATATCTACTTATTTAGTGTTATGTTAGAATAGTGTGTTAAGTGCAATTAGTAATATTTGGCACTGCATGCTAATTGCAATTTCATTATTACATGACCCCTTTTTTTATAGGCAATTGTTAGTTTAGTAAATTGTTAGAGGGGAGAGGAAAATGTTAGTTTCCGAGGATCAAACTCGGAACCTCCTTAAATCTCATTCAATGTCCCTTAGCTCACCAACCGAGCTACCTACGCCGGACAATGATTACATGAACTGATATATTCTACCTGACTAGACATTTATTAGTTTATAAGTCTTTTAATTTTTAAAAAGATATTTATTGCCTTAAAAAATATTTATTAATTTGATTCACTGATAAATAGTTCTTCCGTTTGATTTGTGGTGTTGTGTTATTTTGAAAGGTCAAAGTGAATTTGCAGCTTCACAGAATGAGATTGATGTGCATGAAAACAACCTAGATACTACTCAAGGTGAAGATCAGGAATTAAAAGTGCAGCTTCTACGCAAGTATAGTGGATATCTAGGAAGCCTTAAGAAAGAGTTTTTGAAGAAGAAAAAGAATGGAAAGTTACCAAAGGAAGCTCGACAGCAACTACTTGATTGGTGGAGCAGGCATTACAAATGGCCTTACCCATCGGTAACTATTCTACATCTTTCAAGATTTCATATATCAATCATGCCGTTGGAATGTTTCATAGCACACATGCATCTTGATATCAATGTTCATAATCATATCTGGCATTATCTTGATTTATAGCATTTAGGTTTGATTATTTTGAAGGTCCCTGAACAATTTAGAGTTTTTCATATAATAGGTTTCTAAACTAAGAAGTTTGTGATTCTATCCTTGAATATGTCAATGATTTATAATTTGATCTCTAAACAAAAACTATTTTTATCCTTAAAAAAAAAAAAAAAAACTATTTTTAAGAACTTTGTGAATTATTTGTAATTAGGTACGAAATTTAGGATCCTAATGACAATATTTAAAGTTTTATAGTAACTTAACAAGCTAGTACTTACTATGATTCATGTCAATGATTTATGCTTTTGAGGAGTTGACAACACATGTTCCAATGCAATACTTACTACATTTGATTTCTTAATCAATGCACAGGGGCATCGGTTAACATTACCCTTATTTAAAACATCAGAAACTTAACTACTGATTATTTTAACGTTAGGGCATTCGAGATCAAAAACATTAGAGGCTTAGAAACATTTAATGACAAAATATTTAAAATTTTAGAATTTAAAAGATCAGGAACTTTTTTTTGTCAAAACCTACTATGATTGCGATAATTTATTTAACTTAAATGTGAATTGAAATAAATGTGTAAATTTCTTTATAGTTATTAAACTCTGAAATTATCTTGATCATATTTGAAAAATGAAACCTTAATATAAAATGGCTAATACTGTGATAAAGACTTATTATTTGTGATTTGATGAACATGTAGGAATCCCAAAAGCAAGCACTTGCAGAATCCACAGGCCTAGATTTGAAGCAGATCAACAATTGGTTCATTAATCAGAGAAAACGCCACTGGAAGCCTTCTGAGGATATGCAATTTGCTGTGATGGATGCCACAAATTACTACATGGAAAATGTGATGTGCAAGCCATTTCCTATGGATGCTATGCCTATGCTTCTTTAG

Protein sequence

>MS.gene070489.t1

MAHPLFPRLLSSYLNCLKVGAPPEVVASLEESCAKCEILNGSSGRTGSSSSCIGEDPGLDQFMEAYCEMLIKYEQELTKPFKEAMLFLSRIESQLKAVAVSTDFGQSEFAASQNEIDVHENNLDTTQGEDQELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDAMPMLL