Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070837.t1 | XP_013445567.1 | 77.8 | 465 | 88 | 4 | 1 | 453 | 1 | 462 | 2.80E-155 | 558.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070837.t1 | A0A072TRW5 | 77.8 | 465 | 88 | 4 | 1 | 453 | 1 | 462 | 2.0e-155 | 558.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene070837 | 0.801959 | 7.04E-49 | -1.69E-46 |
| MS.gene049501 | MS.gene070837 | 0.808217 | 3.45E-50 | -1.69E-46 |
| MS.gene050227 | MS.gene070837 | 0.813808 | 2.12E-51 | -1.69E-46 |
| MS.gene050228 | MS.gene070837 | 0.810881 | 9.25E-51 | -1.69E-46 |
| MS.gene050303 | MS.gene070837 | 0.811538 | 6.66E-51 | -1.69E-46 |
| MS.gene050438 | MS.gene070837 | 0.800895 | 1.16E-48 | -1.69E-46 |
| MS.gene050719 | MS.gene070837 | 0.845805 | 3.23E-59 | -1.69E-46 |
| MS.gene050721 | MS.gene070837 | 0.842879 | 1.98E-58 | -1.69E-46 |
| MS.gene050724 | MS.gene070837 | 0.835623 | 1.51E-56 | -1.69E-46 |
| MS.gene052012 | MS.gene070837 | 0.808299 | 3.32E-50 | -1.69E-46 |
| MS.gene052020 | MS.gene070837 | 0.814625 | 1.40E-51 | -1.69E-46 |
| MS.gene052323 | MS.gene070837 | 0.807381 | 5.20E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene070837 | 0.818505 | 1.89E-52 | -1.69E-46 |
| MS.gene055608 | MS.gene070837 | 0.804177 | 2.45E-49 | -1.69E-46 |
| MS.gene057057 | MS.gene070837 | 0.803157 | 3.99E-49 | -1.69E-46 |
| MS.gene057140 | MS.gene070837 | 0.815549 | 8.73E-52 | -1.69E-46 |
| MS.gene058084 | MS.gene070837 | 0.812273 | 4.61E-51 | -1.69E-46 |
| MS.gene058636 | MS.gene070837 | 0.800979 | 1.12E-48 | -1.69E-46 |
| MS.gene058851 | MS.gene070837 | 0.801197 | 1.01E-48 | -1.69E-46 |
| MS.gene058906 | MS.gene070837 | 0.840543 | 8.16E-58 | -1.69E-46 |
| MS.gene06001 | MS.gene070837 | 0.808274 | 3.36E-50 | -1.69E-46 |
| MS.gene060586 | MS.gene070837 | 0.800088 | 1.70E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070837.t1 | MTR_8g464490 | 86.695 | 466 | 45 | 5 | 1 | 453 | 1 | 462 | 0.0 | 766 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 92 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGGAAGTTCAAGTTCTA+TGG | 0.256545 | 8.1:-49616231 | MS.gene070837:CDS |
| AACACTACAACTACAAGAAT+TGG | 0.271431 | 8.1:-49616466 | MS.gene070837:CDS |
| AGGGGTCGTAAATCGTCTTC+TGG | 0.277018 | 8.1:-49615888 | MS.gene070837:CDS |
| GATGCAAAAGAAGGATTATA+AGG | 0.286391 | 8.1:-49616156 | MS.gene070837:CDS |
| AAACTCTACTGTCGGTAAAA+AGG | 0.304429 | 8.1:-49615283 | MS.gene070837:CDS |
| TGCAATGAAGGTGTTCTTGC+AGG | 0.309907 | 8.1:-49615204 | MS.gene070837:CDS |
| TTGAAACAAGGTTCTAGTTT+TGG | 0.317988 | 8.1:-49616380 | MS.gene070837:CDS |
| AAAGGAAAAGGAATAATAAT+AGG | 0.322246 | 8.1:-49615726 | MS.gene070837:CDS |
| TGTTGGTAACATGAAGTTTA+GGG | 0.341584 | 8.1:-49615907 | MS.gene070837:CDS |
| ATGTTGGTAACATGAAGTTT+AGG | 0.350395 | 8.1:-49615908 | MS.gene070837:CDS |
| TTTATTCACTGTCAATTTCC+TGG | 0.361000 | 8.1:+49615230 | None:intergenic |
| ATCCTTCTAGCTGGATTACC+TGG | 0.362375 | 8.1:+49614241 | None:intergenic |
| GAAGGATTTACTTGCGGTAA+TGG | 0.378545 | 8.1:-49614225 | None:intergenic |
| CAGTGAGTAGTACCAGTCTT+AGG | 0.383306 | 8.1:-49615971 | MS.gene070837:CDS |
| TCAGGACCAGCATAAATATA+TGG | 0.383753 | 8.1:-49616036 | MS.gene070837:CDS |
| ATGCAAAAGAAGGATTATAA+GGG | 0.390439 | 8.1:-49616155 | MS.gene070837:CDS |
| AAGTTCAAGTACTATGTTAC+CGG | 0.393323 | 8.1:-49615322 | MS.gene070837:CDS |
| ACACTACAACTACAAGAATT+GGG | 0.394132 | 8.1:-49616465 | MS.gene070837:CDS |
| CGGGATCTTCATCGATCATT+GGG | 0.418179 | 8.1:-49617362 | MS.gene070837:CDS |
| AGCTGTAATGGAAGATGTCT+TGG | 0.424271 | 8.1:+49615755 | None:intergenic |
| ACGGGATCTTCATCGATCAT+TGG | 0.433678 | 8.1:-49617363 | MS.gene070837:CDS |
| AAGGCTAGTTGCAATCTTGT+TGG | 0.439609 | 8.1:-49616248 | MS.gene070837:CDS |
| TCAGTTAGAAGCGTTAGTTT+TGG | 0.442082 | 8.1:-49616092 | MS.gene070837:CDS |
| GGGGTCGTAAATCGTCTTCT+GGG | 0.444556 | 8.1:-49615887 | MS.gene070837:CDS |
| CATCAATGTTGCAAAGTCAT+TGG | 0.449370 | 8.1:-49615694 | MS.gene070837:intron |
| ACCCAGGTAATCCAGCTAGA+AGG | 0.450340 | 8.1:-49614243 | MS.gene070837:CDS |
| TGGAAGCTTCTAAGAAGAAC+GGG | 0.454842 | 8.1:-49617381 | MS.gene070837:CDS |
| CGCAAGTAAATCCTTCTAGC+TGG | 0.462244 | 8.1:+49614232 | None:intergenic |
| TCCATTACAGCTGAAGGAAA+AGG | 0.468562 | 8.1:-49615744 | MS.gene070837:CDS |
| CGAAAATCACAGATAAGAAC+AGG | 0.470754 | 8.1:-49615797 | MS.gene070837:CDS |
| GATAAGAACAGGTGCAATCC+TGG | 0.472976 | 8.1:-49615786 | MS.gene070837:CDS |
| CTTGATTTCGAGACTGAAGA+AGG | 0.477777 | 8.1:+49616494 | None:intergenic |
| TCAAATGTTAGCAGGACAAA+AGG | 0.480174 | 8.1:-49616332 | MS.gene070837:CDS |
| GATGTCTTGGATTTATTACC+AGG | 0.480862 | 8.1:+49615768 | None:intergenic |
| AATCAATGTCAAATGTTAGC+AGG | 0.483536 | 8.1:-49616340 | MS.gene070837:CDS |
| ACAAACTTAGCTTCATAACT+AGG | 0.487569 | 8.1:+49615837 | None:intergenic |
| ATCAGCGGCTTTGACAATAC+TGG | 0.492342 | 8.1:-49615118 | MS.gene070837:intron |
| ATTCTCTTTCCCCTTGTCAA+AGG | 0.493927 | 8.1:+49615257 | None:intergenic |
| AGTAGAAGCCTCAAGAGTTC+AGG | 0.496950 | 8.1:-49616054 | MS.gene070837:CDS |
| GCAATGAAGGTGTTCTTGCA+GGG | 0.497306 | 8.1:-49615203 | MS.gene070837:CDS |
| TCACTCTGGTGAGGAGGCAG+TGG | 0.497952 | 8.1:-49616531 | MS.gene070837:CDS |
| TTGATTGTTGAAGCTAACTC+TGG | 0.505940 | 8.1:-49616846 | MS.gene070837:CDS |
| TCTTCTGGGAAGTCTAGTGT+TGG | 0.508703 | 8.1:-49615873 | MS.gene070837:CDS |
| AGAACACAATCGTCAACATA+AGG | 0.510456 | 8.1:-49615154 | MS.gene070837:CDS |
| ACAGCTGAAGGAAAAGGAAA+AGG | 0.511415 | 8.1:-49615738 | MS.gene070837:CDS |
| ATGCTGGTCCTGAACTCTTG+AGG | 0.511672 | 8.1:+49616046 | None:intergenic |
| TGAGGAGGCAGTGGCGTCGC+CGG | 0.512983 | 8.1:-49616522 | MS.gene070837:CDS |
| AAAAGTCTCAAAAGTGGAGA+TGG | 0.515736 | 8.1:-49615931 | MS.gene070837:CDS |
| AAGTCAAAATTTGCTCACTC+TGG | 0.517195 | 8.1:-49616545 | MS.gene070837:CDS |
| AACAATTTGAAGCACCTATG+TGG | 0.521866 | 8.1:-49616875 | MS.gene070837:CDS |
| GGATTATAAGGGGCATAAGA+AGG | 0.525077 | 8.1:-49616144 | MS.gene070837:CDS |
| ACTCGCGAGCAGACAACTGA+TGG | 0.536082 | 8.1:+49616570 | None:intergenic |
| AACACCAAAAGTCTCAAAAG+TGG | 0.540910 | 8.1:-49615937 | MS.gene070837:CDS |
| ACATCTTCCATTACAGCTGA+AGG | 0.548952 | 8.1:-49615750 | MS.gene070837:CDS |
| GGAAAAGGAATAATAATAGG+AGG | 0.550465 | 8.1:-49615723 | MS.gene070837:CDS |
| CTTCTGGGAAGTCTAGTGTT+GGG | 0.550470 | 8.1:-49615872 | MS.gene070837:CDS |
| TGAGAGTATGATGCAAAAGA+AGG | 0.550843 | 8.1:-49616165 | MS.gene070837:CDS |
| ACACCTCCATATATTTATGC+TGG | 0.557766 | 8.1:+49616030 | None:intergenic |
| ATGGAAGCTTCTAAGAAGAA+CGG | 0.559243 | 8.1:-49617382 | MS.gene070837:CDS |
| TCAAAAGTGGAGATGGATGT+TGG | 0.563203 | 8.1:-49615924 | MS.gene070837:CDS |
| CACTACAACTACAAGAATTG+GGG | 0.565346 | 8.1:-49616464 | MS.gene070837:CDS |
| TCTTCAGTCTCGAAATCAAG+AGG | 0.567981 | 8.1:-49616491 | MS.gene070837:CDS |
| AAACAGCAGGGTTTAAGCAA+GGG | 0.581786 | 8.1:-49616410 | MS.gene070837:CDS |
| CAACATAAGGATGACAAAGC+AGG | 0.583166 | 8.1:-49615141 | MS.gene070837:CDS |
| TCCTTCTAGCTGGATTACCT+GGG | 0.585042 | 8.1:+49614242 | None:intergenic |
| GTTTGTTTCAAAGCAGCAGA+GGG | 0.585395 | 8.1:-49615820 | MS.gene070837:CDS |
| ATTTGCTCACTCTGGTGAGG+AGG | 0.588243 | 8.1:-49616537 | MS.gene070837:CDS |
| GAGACTGAAGAAGGAAGTGC+CGG | 0.589263 | 8.1:+49616503 | None:intergenic |
| ACAATTTGAAGCACCTATGT+GGG | 0.592746 | 8.1:-49616874 | MS.gene070837:CDS |
| AACAGCAGGGTTTAAGCAAG+GGG | 0.595246 | 8.1:-49616409 | MS.gene070837:CDS |
| TAAACAGCAGGGTTTAAGCA+AGG | 0.595298 | 8.1:-49616411 | MS.gene070837:CDS |
| ACAATCAAATCTGCCCACAT+AGG | 0.600457 | 8.1:+49616861 | None:intergenic |
| CAACGTGAGGCAAAGAACCC+AGG | 0.601059 | 8.1:-49614259 | MS.gene070837:CDS |
| GTTGCAGAACTGATGATGAC+TGG | 0.605883 | 8.1:-49616721 | MS.gene070837:intron |
| AGGGGAAAGAGAATGCTACC+AGG | 0.607255 | 8.1:-49615248 | MS.gene070837:CDS |
| TGAAAGGTCTACAAGAAGCA+TGG | 0.613540 | 8.1:-49616195 | MS.gene070837:CDS |
| CAGCTAGAAGGATTTACTTG+CGG | 0.614400 | 8.1:-49614231 | MS.gene070837:CDS |
| CAATGAAGGTGTTCTTGCAG+GGG | 0.614641 | 8.1:-49615202 | MS.gene070837:CDS |
| AAAATTTGCTCACTCTGGTG+AGG | 0.622334 | 8.1:-49616540 | MS.gene070837:CDS |
| AAGGGGAGGTGCTTGAAACA+AGG | 0.630756 | 8.1:-49616392 | MS.gene070837:CDS |
| AAAAGGAGGCCTTTGACAAG+GGG | 0.632559 | 8.1:-49615266 | MS.gene070837:CDS |
| AGTTCAAGTACTATGTTACC+GGG | 0.633704 | 8.1:-49615321 | MS.gene070837:CDS |
| TGCAAAAGAAGGATTATAAG+GGG | 0.638284 | 8.1:-49616154 | MS.gene070837:CDS |
| AATGAAGGTGTTCTTGCAGG+GGG | 0.640692 | 8.1:-49615201 | MS.gene070837:CDS |
| GGATGACAAAGCAGGATCAG+CGG | 0.644190 | 8.1:-49615133 | MS.gene070837:CDS |
| CAGGGGAAAAGCTATGTCGA+AGG | 0.653146 | 8.1:-49616267 | MS.gene070837:CDS |
| AGCAGGGTTTAAGCAAGGGG+AGG | 0.660854 | 8.1:-49616406 | MS.gene070837:CDS |
| GTTGGTAACATGAAGTTTAG+GGG | 0.667862 | 8.1:-49615906 | MS.gene070837:CDS |
| AGTTTGTTTCAAAGCAGCAG+AGG | 0.674189 | 8.1:-49615821 | MS.gene070837:CDS |
| GGACCAGCATAAATATATGG+AGG | 0.674367 | 8.1:-49616033 | MS.gene070837:CDS |
| ACTACAACTACAAGAATTGG+GGG | 0.675114 | 8.1:-49616463 | MS.gene070837:CDS |
| AAAAGTCAACGATCAACGTG+AGG | 0.681471 | 8.1:-49614272 | MS.gene070837:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAACTAAAAAGTAAATTAT+AGG | + | chr8.1:49616200-49616219 | None:intergenic | 10.0% |
| !!! | ATAGAATGATAATATTTTTT+TGG | + | chr8.1:49616945-49616964 | None:intergenic | 10.0% |
| !!! | ATTAACAGTTATTAATTTTA+GGG | - | chr8.1:49614641-49614660 | MS.gene070837:intron | 10.0% |
| !! | AATTATTATCACATTATTAC+AGG | - | chr8.1:49617314-49617333 | MS.gene070837:intron | 15.0% |
| !! | ATTATTATCACATTATTACA+GGG | - | chr8.1:49617315-49617334 | MS.gene070837:intron | 15.0% |
| !! | CATATCTAGAAATAAATATT+TGG | + | chr8.1:49616849-49616868 | None:intergenic | 15.0% |
| !! | TGAATAAAGATAAAATTTGT+AGG | + | chr8.1:49615988-49616007 | None:intergenic | 15.0% |
| !!! | CATTAACAGTTATTAATTTT+AGG | - | chr8.1:49614640-49614659 | MS.gene070837:intron | 15.0% |
| !!! | GAAAAATTTGTTTCAATTAA+GGG | - | chr8.1:49614501-49614520 | MS.gene070837:intron | 15.0% |
| !!! | GCTATTAATTTATGTTTTTA+AGG | - | chr8.1:49614672-49614691 | MS.gene070837:intron | 15.0% |
| !!! | TGAAAAATTTGTTTCAATTA+AGG | - | chr8.1:49614500-49614519 | MS.gene070837:intron | 15.0% |
| !! | AAAGGAAAAGGAATAATAAT+AGG | - | chr8.1:49615884-49615903 | MS.gene070837:CDS | 20.0% |
| !! | AAGTAAATTATAGGATATCT+AGG | + | chr8.1:49616191-49616210 | None:intergenic | 20.0% |
| !! | AATTGAACATGTTGTAAAAT+TGG | + | chr8.1:49614617-49614636 | None:intergenic | 20.0% |
| !! | GTTGTAATTATATTACATAC+AGG | - | chr8.1:49614712-49614731 | MS.gene070837:intron | 20.0% |
| !! | TATGAAATGTTGTCAAATAA+TGG | + | chr8.1:49617056-49617075 | None:intergenic | 20.0% |
| !! | TGGATAAAAAGAATTATGAA+AGG | - | chr8.1:49615399-49615418 | MS.gene070837:intron | 20.0% |
| !!! | ATGATAATATTTTTTTGGAC+AGG | + | chr8.1:49616940-49616959 | None:intergenic | 20.0% |
| !!! | TATTAATCTGAATGTTTTGT+TGG | - | chr8.1:49615175-49615194 | MS.gene070837:CDS | 20.0% |
| !!! | TTTGATTTCTTATGTTGTTT+TGG | - | chr8.1:49614862-49614881 | MS.gene070837:intron | 20.0% |
| ! | AACAAAAAAAACTCTACTGT+CGG | - | chr8.1:49616319-49616338 | MS.gene070837:CDS | 25.0% |
| ! | AACCCAAAAAATATTCCAAA+AGG | + | chr8.1:49614941-49614960 | None:intergenic | 25.0% |
| ! | AACCTAAAAACAATGTGTAA+TGG | + | chr8.1:49614419-49614438 | None:intergenic | 25.0% |
| ! | AATTATAGGATATCTAGGAA+AGG | + | chr8.1:49616186-49616205 | None:intergenic | 25.0% |
| ! | ACCCAAAAAATATTCCAAAA+GGG | + | chr8.1:49614940-49614959 | None:intergenic | 25.0% |
| ! | ACCTAAAAACAATGTGTAAT+GGG | + | chr8.1:49614418-49614437 | None:intergenic | 25.0% |
| ! | ATGCAAAAGAAGGATTATAA+GGG | - | chr8.1:49615455-49615474 | MS.gene070837:intron | 25.0% |
| ! | GTGAATAAAAATTGCAATGA+AGG | - | chr8.1:49616394-49616413 | MS.gene070837:CDS | 25.0% |
| !! | ATAACTGTCACTTAATACAA+AGG | + | chr8.1:49616141-49616160 | None:intergenic | 25.0% |
| !! | ATTCCACATTTCACATTTTT+AGG | - | chr8.1:49614325-49614344 | MS.gene070837:intron | 25.0% |
| !! | ATTGCAATCAAATCATTTTC+AGG | - | chr8.1:49615015-49615034 | MS.gene070837:intron | 25.0% |
| !! | TAACTGTCACTTAATACAAA+GGG | + | chr8.1:49616140-49616159 | None:intergenic | 25.0% |
| !! | TAATAATTATGCATTAGCCT+TGG | + | chr8.1:49617302-49617321 | None:intergenic | 25.0% |
| !! | TGATGCATTTGATAATCATT+AGG | + | chr8.1:49616084-49616103 | None:intergenic | 25.0% |
| !! | TTCCACATTTCACATTTTTA+GGG | - | chr8.1:49614326-49614345 | MS.gene070837:intron | 25.0% |
| !!! | ATCCCTTTTGGAATATTTTT+TGG | - | chr8.1:49614935-49614954 | MS.gene070837:intron | 25.0% |
| !!! | TCCCTTTTGGAATATTTTTT+GGG | - | chr8.1:49614936-49614955 | MS.gene070837:intron | 25.0% |
| !!! | TTATTTGTTCTTCGTTTTTG+TGG | - | chr8.1:49614471-49614490 | MS.gene070837:intron | 25.0% |
| !!! | TTTTTTGGGTTTTCCATTTT+CGG | - | chr8.1:49614950-49614969 | MS.gene070837:intron | 25.0% |
| !!! | TTTTTTGTTTCAATGCTCTT+TGG | - | chr8.1:49617268-49617287 | MS.gene070837:intron | 25.0% |
| !!! | TTTTTTTTGTTGACTTTTCC+CGG | + | chr8.1:49616310-49616329 | None:intergenic | 25.0% |
| AAAAATGCATGACTTGAAGA+CGG | + | chr8.1:49615954-49615973 | None:intergenic | 30.0% | |
| AACACTACAACTACAAGAAT+TGG | - | chr8.1:49615144-49615163 | MS.gene070837:CDS | 30.0% | |
| AACCCTAAAAATGTGAAATG+TGG | + | chr8.1:49614331-49614350 | None:intergenic | 30.0% | |
| AAGTTCAAGTACTATGTTAC+CGG | - | chr8.1:49616288-49616307 | MS.gene070837:CDS | 30.0% | |
| AATCAATGTCAAATGTTAGC+AGG | - | chr8.1:49615270-49615289 | MS.gene070837:CDS | 30.0% | |
| ACAAACTTAGCTTCATAACT+AGG | + | chr8.1:49615776-49615795 | None:intergenic | 30.0% | |
| ACACTACAACTACAAGAATT+GGG | - | chr8.1:49615145-49615164 | MS.gene070837:CDS | 30.0% | |
| AGAGCTCAAAACTTCTAATT+TGG | + | chr8.1:49616116-49616135 | None:intergenic | 30.0% | |
| AGGATTGATGAGTGAAAAAT+CGG | - | chr8.1:49615298-49615317 | MS.gene070837:CDS | 30.0% | |
| ATGTTCTTATTGAGAATGCT+GGG | - | chr8.1:49616233-49616252 | MS.gene070837:CDS | 30.0% | |
| GATGCAAAAGAAGGATTATA+AGG | - | chr8.1:49615454-49615473 | MS.gene070837:intron | 30.0% | |
| GGAAAAGGAATAATAATAGG+AGG | - | chr8.1:49615887-49615906 | MS.gene070837:CDS | 30.0% | |
| GTCTAATATATCATGTGTTG+TGG | - | chr8.1:49616590-49616609 | MS.gene070837:intron | 30.0% | |
| TATGTTCTTATTGAGAATGC+TGG | - | chr8.1:49616232-49616251 | MS.gene070837:CDS | 30.0% | |
| TATTCCAAAAGGGATTCTTA+CGG | + | chr8.1:49614930-49614949 | None:intergenic | 30.0% | |
| TGAAAATATGTGAGTGAGTT+TGG | - | chr8.1:49614790-49614809 | MS.gene070837:intron | 30.0% | |
| TGCAAAAGAAGGATTATAAG+GGG | - | chr8.1:49615456-49615475 | MS.gene070837:intron | 30.0% | |
| TTTATTCACTGTCAATTTCC+TGG | + | chr8.1:49616383-49616402 | None:intergenic | 30.0% | |
| ! | CAACTTAATTTTTCTTGCCA+TGG | - | chr8.1:49616816-49616835 | MS.gene070837:intron | 30.0% |
| ! | TGAGTGAGTTTGGATTTTTA+TGG | - | chr8.1:49614800-49614819 | MS.gene070837:intron | 30.0% |
| ! | TGCATTTGATAATCATTAGG+TGG | + | chr8.1:49616081-49616100 | None:intergenic | 30.0% |
| !! | ATGTTGGTAACATGAAGTTT+AGG | - | chr8.1:49615702-49615721 | MS.gene070837:CDS | 30.0% |
| !! | GAGCATTGAAACAAAAAATG+CGG | + | chr8.1:49617266-49617285 | None:intergenic | 30.0% |
| !! | TCCCATTACACATTGTTTTT+AGG | - | chr8.1:49614414-49614433 | MS.gene070837:intron | 30.0% |
| !! | TGTACTTCAGTTTTATGACT+TGG | - | chr8.1:49617208-49617227 | MS.gene070837:intron | 30.0% |
| !! | TGTTGGTAACATGAAGTTTA+GGG | - | chr8.1:49615703-49615722 | MS.gene070837:CDS | 30.0% |
| !!! | ACACATTGTTTTTAGGTTTC+AGG | - | chr8.1:49614421-49614440 | MS.gene070837:intron | 30.0% |
| !!! | GTTCTAGTTTTGGTTATGAA+GGG | - | chr8.1:49615240-49615259 | MS.gene070837:CDS | 30.0% |
| !!! | TTGAAACAAGGTTCTAGTTT+TGG | - | chr8.1:49615230-49615249 | MS.gene070837:CDS | 30.0% |
| AAAAGTCTCAAAAGTGGAGA+TGG | - | chr8.1:49615679-49615698 | MS.gene070837:intron | 35.0% | |
| AAACTCTACTGTCGGTAAAA+AGG | - | chr8.1:49616327-49616346 | MS.gene070837:CDS | 35.0% | |
| AAATATTTGGTCAGAAGCCA+TGG | + | chr8.1:49616836-49616855 | None:intergenic | 35.0% | |
| AACACCAAAAGTCTCAAAAG+TGG | - | chr8.1:49615673-49615692 | MS.gene070837:intron | 35.0% | |
| ACACCTCCATATATTTATGC+TGG | + | chr8.1:49615583-49615602 | None:intergenic | 35.0% | |
| ACTACAACTACAAGAATTGG+GGG | - | chr8.1:49615147-49615166 | MS.gene070837:CDS | 35.0% | |
| AGAACACAATCGTCAACATA+AGG | - | chr8.1:49616456-49616475 | MS.gene070837:CDS | 35.0% | |
| AGTTCAAGTACTATGTTACC+GGG | - | chr8.1:49616289-49616308 | MS.gene070837:CDS | 35.0% | |
| ATTCCAAAAGGGATTCTTAC+GGG | + | chr8.1:49614929-49614948 | None:intergenic | 35.0% | |
| ATTTCCTTAGTTGAGATGTC+TGG | - | chr8.1:49616641-49616660 | MS.gene070837:intron | 35.0% | |
| CACTACAACTACAAGAATTG+GGG | - | chr8.1:49615146-49615165 | MS.gene070837:CDS | 35.0% | |
| CATCAATGTTGCAAAGTCAT+TGG | - | chr8.1:49615916-49615935 | MS.gene070837:CDS | 35.0% | |
| CATTATCCTGTAAACTTCCA+AGG | - | chr8.1:49616707-49616726 | MS.gene070837:CDS | 35.0% | |
| CGAAAATCACAGATAAGAAC+AGG | - | chr8.1:49615813-49615832 | MS.gene070837:CDS | 35.0% | |
| CTTGGAAGTTTACAGGATAA+TGG | + | chr8.1:49616709-49616728 | None:intergenic | 35.0% | |
| GACAACATTGTTTCAACTCA+CGG | - | chr8.1:49617156-49617175 | MS.gene070837:intron | 35.0% | |
| GATGTCTTGGATTTATTACC+AGG | + | chr8.1:49615845-49615864 | None:intergenic | 35.0% | |
| GATTGATGAGTGAAAAATCG+GGG | - | chr8.1:49615300-49615319 | MS.gene070837:CDS | 35.0% | |
| GGATTGATGAGTGAAAAATC+GGG | - | chr8.1:49615299-49615318 | MS.gene070837:CDS | 35.0% | |
| TCAAATGTTAGCAGGACAAA+AGG | - | chr8.1:49615278-49615297 | MS.gene070837:CDS | 35.0% | |
| TCAGGACCAGCATAAATATA+TGG | - | chr8.1:49615574-49615593 | MS.gene070837:intron | 35.0% | |
| TCTGAATGAGTTAGCAAATC+TGG | - | chr8.1:49616010-49616029 | MS.gene070837:CDS | 35.0% | |
| TTGATTGTTGAAGCTAACTC+TGG | - | chr8.1:49614764-49614783 | MS.gene070837:intron | 35.0% | |
| TTGTCAAATAATGGCTACTG+CGG | + | chr8.1:49617047-49617066 | None:intergenic | 35.0% | |
| ! | AACAATTTGAAGCACCTATG+TGG | - | chr8.1:49614735-49614754 | MS.gene070837:intron | 35.0% |
| ! | AAGTCAAAATTTGCTCACTC+TGG | - | chr8.1:49615065-49615084 | MS.gene070837:intron | 35.0% |
| ! | ACAATTTGAAGCACCTATGT+GGG | - | chr8.1:49614736-49614755 | MS.gene070837:intron | 35.0% |
| ! | ACTTTTGAACACAATACCAG+GGG | - | chr8.1:49615326-49615345 | MS.gene070837:CDS | 35.0% |
| ! | ATGGAAGCTTCTAAGAAGAA+CGG | - | chr8.1:49614228-49614247 | MS.gene070837:CDS | 35.0% |
| ! | GACTTTTGAACACAATACCA+GGG | - | chr8.1:49615325-49615344 | MS.gene070837:CDS | 35.0% |
| ! | TACATGACTTTTCCTAAGAC+TGG | + | chr8.1:49615654-49615673 | None:intergenic | 35.0% |
| ! | TGACTTTTGAACACAATACC+AGG | - | chr8.1:49615324-49615343 | MS.gene070837:CDS | 35.0% |
| ! | TGAGAGTATGATGCAAAAGA+AGG | - | chr8.1:49615445-49615464 | MS.gene070837:intron | 35.0% |
| ! | TGTTGGAAGTTCAAGTTCTA+TGG | - | chr8.1:49615379-49615398 | MS.gene070837:intron | 35.0% |
| !! | GTTGGTAACATGAAGTTTAG+GGG | - | chr8.1:49615704-49615723 | MS.gene070837:CDS | 35.0% |
| !! | GTTTTGTTGGATAAACAGCA+GGG | - | chr8.1:49615188-49615207 | MS.gene070837:CDS | 35.0% |
| !! | TGTTTTGTTGGATAAACAGC+AGG | - | chr8.1:49615187-49615206 | MS.gene070837:CDS | 35.0% |
| !!! | ATCTCCACTTTTGAGACTTT+TGG | + | chr8.1:49615680-49615699 | None:intergenic | 35.0% |
| !!! | CAGTTAGAAGCGTTAGTTTT+GGG | - | chr8.1:49615519-49615538 | MS.gene070837:intron | 35.0% |
| !!! | GGTTCTAGTTTTGGTTATGA+AGG | - | chr8.1:49615239-49615258 | MS.gene070837:CDS | 35.0% |
| !!! | TAGTTTTGGTTATGAAGGGA+AGG | - | chr8.1:49615244-49615263 | MS.gene070837:CDS | 35.0% |
| !!! | TCAGTTAGAAGCGTTAGTTT+TGG | - | chr8.1:49615518-49615537 | MS.gene070837:intron | 35.0% |
| AAAAAGGAGGCCTTTGACAA+GGG | - | chr8.1:49616343-49616362 | MS.gene070837:CDS | 40.0% | |
| AAAAGTCAACGATCAACGTG+AGG | - | chr8.1:49617338-49617357 | MS.gene070837:intron | 40.0% | |
| AAACAGCAGGGTTTAAGCAA+GGG | - | chr8.1:49615200-49615219 | MS.gene070837:CDS | 40.0% | |
| AACACCTGTGTTGTCAATCA+CGG | - | chr8.1:49616969-49616988 | MS.gene070837:intron | 40.0% | |
| AACTACAAGAATTGGGGGAA+AGG | - | chr8.1:49615152-49615171 | MS.gene070837:CDS | 40.0% | |
| ACAATCAAATCTGCCCACAT+AGG | + | chr8.1:49614752-49614771 | None:intergenic | 40.0% | |
| ACAGCAATGCTATAGTGTAG+TGG | + | chr8.1:49617118-49617137 | None:intergenic | 40.0% | |
| ACAGCTGAAGGAAAAGGAAA+AGG | - | chr8.1:49615872-49615891 | MS.gene070837:CDS | 40.0% | |
| ACATCTTCCATTACAGCTGA+AGG | - | chr8.1:49615860-49615879 | MS.gene070837:CDS | 40.0% | |
| ATGAGTTAGCAAATCTGGTC+CGG | - | chr8.1:49616015-49616034 | MS.gene070837:CDS | 40.0% | |
| ATTCTCTTTCCCCTTGTCAA+AGG | + | chr8.1:49616356-49616375 | None:intergenic | 40.0% | |
| CAACATAAGGATGACAAAGC+AGG | - | chr8.1:49616469-49616488 | MS.gene070837:CDS | 40.0% | |
| CAGCTAGAAGGATTTACTTG+CGG | - | chr8.1:49617379-49617398 | MS.gene070837:CDS | 40.0% | |
| CTTGATTTCGAGACTGAAGA+AGG | + | chr8.1:49615119-49615138 | None:intergenic | 40.0% | |
| GAAACAAAAAATGCGGCGAA+AGG | + | chr8.1:49617259-49617278 | None:intergenic | 40.0% | |
| GAATGACTAATCACGTTCCT+TGG | + | chr8.1:49616727-49616746 | None:intergenic | 40.0% | |
| GGACCAGCATAAATATATGG+AGG | - | chr8.1:49615577-49615596 | MS.gene070837:intron | 40.0% | |
| GTAAAACCCTGAACCGAAAA+TGG | + | chr8.1:49614966-49614985 | None:intergenic | 40.0% | |
| GTTTGTTTCAAAGCAGCAGA+GGG | - | chr8.1:49615790-49615809 | MS.gene070837:CDS | 40.0% | |
| TAAAAAGGAGGCCTTTGACA+AGG | - | chr8.1:49616342-49616361 | MS.gene070837:CDS | 40.0% | |
| TAAACAGCAGGGTTTAAGCA+AGG | - | chr8.1:49615199-49615218 | MS.gene070837:CDS | 40.0% | |
| TCAAAAGTGGAGATGGATGT+TGG | - | chr8.1:49615686-49615705 | MS.gene070837:intron | 40.0% | |
| TCCATTACAGCTGAAGGAAA+AGG | - | chr8.1:49615866-49615885 | MS.gene070837:CDS | 40.0% | |
| TCTTCAGTCTCGAAATCAAG+AGG | - | chr8.1:49615119-49615138 | MS.gene070837:CDS | 40.0% | |
| TGAAAGGTCTACAAGAAGCA+TGG | - | chr8.1:49615415-49615434 | MS.gene070837:intron | 40.0% | |
| TGTTGTCAAATAGCAGCTAC+AGG | + | chr8.1:49617143-49617162 | None:intergenic | 40.0% | |
| ! | AAAATTTGCTCACTCTGGTG+AGG | - | chr8.1:49615070-49615089 | MS.gene070837:intron | 40.0% |
| ! | AAGAAACGAGAAGAGAGTGT+TGG | + | chr8.1:49614286-49614305 | None:intergenic | 40.0% |
| ! | AAGGCTAGTTGCAATCTTGT+TGG | - | chr8.1:49615362-49615381 | MS.gene070837:intron | 40.0% |
| ! | AATCCCTGTTTTATACGAGC+CGG | + | chr8.1:49616037-49616056 | None:intergenic | 40.0% |
| ! | AGCTGTAATGGAAGATGTCT+TGG | + | chr8.1:49615858-49615877 | None:intergenic | 40.0% |
| ! | AGTTTGTTTCAAAGCAGCAG+AGG | - | chr8.1:49615789-49615808 | MS.gene070837:CDS | 40.0% |
| ! | GGATTATAAGGGGCATAAGA+AGG | - | chr8.1:49615466-49615485 | MS.gene070837:intron | 40.0% |
| ! | GGTTTTCCATTTTCGGTTCA+GGG | - | chr8.1:49614957-49614976 | MS.gene070837:intron | 40.0% |
| ! | TCCTTTTCCTTCAGCTGTAA+TGG | + | chr8.1:49615870-49615889 | None:intergenic | 40.0% |
| ! | TGCTGGGTTTACATTTTCAC+AGG | - | chr8.1:49616249-49616268 | MS.gene070837:CDS | 40.0% |
| ! | TGGAAGCTTCTAAGAAGAAC+GGG | - | chr8.1:49614229-49614248 | MS.gene070837:CDS | 40.0% |
| AAAAGGAGGCCTTTGACAAG+GGG | - | chr8.1:49616344-49616363 | MS.gene070837:CDS | 45.0% | |
| AACAGCAGGGTTTAAGCAAG+GGG | - | chr8.1:49615201-49615220 | MS.gene070837:CDS | 45.0% | |
| ACGGGATCTTCATCGATCAT+TGG | - | chr8.1:49614247-49614266 | MS.gene070837:CDS | 45.0% | |
| AGTAGAAGCCTCAAGAGTTC+AGG | - | chr8.1:49615556-49615575 | MS.gene070837:intron | 45.0% | |
| CAATCCGTGATTGACAACAC+AGG | + | chr8.1:49616976-49616995 | None:intergenic | 45.0% | |
| CACGTTCCTTGGAAGTTTAC+AGG | + | chr8.1:49616716-49616735 | None:intergenic | 45.0% | |
| CAGTGAGTAGTACCAGTCTT+AGG | - | chr8.1:49615639-49615658 | MS.gene070837:intron | 45.0% | |
| CGCAAGTAAATCCTTCTAGC+TGG | + | chr8.1:49617381-49617400 | None:intergenic | 45.0% | |
| CGGGATCTTCATCGATCATT+GGG | - | chr8.1:49614248-49614267 | MS.gene070837:CDS | 45.0% | |
| CTCTACTGTCGGTAAAAAGG+AGG | - | chr8.1:49616330-49616349 | MS.gene070837:CDS | 45.0% | |
| GATAAGAACAGGTGCAATCC+TGG | - | chr8.1:49615824-49615843 | MS.gene070837:CDS | 45.0% | |
| GCTCTTTGGCAAATCTTCCA+AGG | - | chr8.1:49617282-49617301 | MS.gene070837:intron | 45.0% | |
| GTTGCCAGACATCTCAACTA+AGG | + | chr8.1:49616648-49616667 | None:intergenic | 45.0% | |
| ! | ATCAGCGGCTTTGACAATAC+TGG | - | chr8.1:49616492-49616511 | MS.gene070837:CDS | 45.0% |
| ! | ATCCTTCTAGCTGGATTACC+TGG | + | chr8.1:49617372-49617391 | None:intergenic | 45.0% |
| ! | CATCGATCATTGGGCTTTTC+TGG | - | chr8.1:49614257-49614276 | MS.gene070837:CDS | 45.0% |
| ! | CGGTTCAGGGTTTTACTGAA+TGG | - | chr8.1:49614970-49614989 | MS.gene070837:intron | 45.0% |
| ! | CTTCTGGGAAGTCTAGTGTT+GGG | - | chr8.1:49615738-49615757 | MS.gene070837:CDS | 45.0% |
| ! | GGGTTTTCCATTTTCGGTTC+AGG | - | chr8.1:49614956-49614975 | MS.gene070837:intron | 45.0% |
| ! | GTTGCAGAACTGATGATGAC+TGG | - | chr8.1:49614889-49614908 | MS.gene070837:intron | 45.0% |
| ! | TCCTTCTAGCTGGATTACCT+GGG | + | chr8.1:49617371-49617390 | None:intergenic | 45.0% |
| ! | TCTTCTGGGAAGTCTAGTGT+TGG | - | chr8.1:49615737-49615756 | MS.gene070837:CDS | 45.0% |
| !! | AATGAAGGTGTTCTTGCAGG+GGG | - | chr8.1:49616409-49616428 | MS.gene070837:CDS | 45.0% |
| !! | CAATGAAGGTGTTCTTGCAG+GGG | - | chr8.1:49616408-49616427 | MS.gene070837:CDS | 45.0% |
| !! | GCAATGAAGGTGTTCTTGCA+GGG | - | chr8.1:49616407-49616426 | MS.gene070837:CDS | 45.0% |
| !! | TGCAATGAAGGTGTTCTTGC+AGG | - | chr8.1:49616406-49616425 | MS.gene070837:CDS | 45.0% |
| !! | TTAAATTATAATTTAACAAA+AGG | + | chr8.1:49616680-49616699 | None:intergenic | 5.0% |
| !! | TTGTTAAATTATAATTTAAA+AGG | - | chr8.1:49616681-49616700 | MS.gene070837:intron | 5.0% |
| ACCCAGGTAATCCAGCTAGA+AGG | - | chr8.1:49617367-49617386 | MS.gene070837:CDS | 50.0% | |
| AGGGGAAAGAGAATGCTACC+AGG | - | chr8.1:49616362-49616381 | MS.gene070837:CDS | 50.0% | |
| AGGGGTCGTAAATCGTCTTC+TGG | - | chr8.1:49615722-49615741 | MS.gene070837:CDS | 50.0% | |
| ATGCTGGTCCTGAACTCTTG+AGG | + | chr8.1:49615567-49615586 | None:intergenic | 50.0% | |
| ATTTGCTCACTCTGGTGAGG+AGG | - | chr8.1:49615073-49615092 | MS.gene070837:intron | 50.0% | |
| CAGGGGAAAAGCTATGTCGA+AGG | - | chr8.1:49615343-49615362 | MS.gene070837:intron | 50.0% | |
| CCAAAAGGGATTCTTACGGG+TGG | + | chr8.1:49614926-49614945 | None:intergenic | 50.0% | |
| GGATGACAAAGCAGGATCAG+CGG | - | chr8.1:49616477-49616496 | MS.gene070837:CDS | 50.0% | |
| GGGGTCGTAAATCGTCTTCT+GGG | - | chr8.1:49615723-49615742 | MS.gene070837:CDS | 50.0% | |
| ! | CCACCCGTAAGAATCCCTTT+TGG | - | chr8.1:49614923-49614942 | MS.gene070837:intron | 50.0% |
| ! | CTTCGACATAGCTTTTCCCC+TGG | + | chr8.1:49615345-49615364 | None:intergenic | 50.0% |
| ! | GAGACTGAAGAAGGAAGTGC+CGG | + | chr8.1:49615110-49615129 | None:intergenic | 50.0% |
| ! | GGTCCGGCTCGTATAAAACA+GGG | - | chr8.1:49616031-49616050 | MS.gene070837:CDS | 50.0% |
| ! | TGGTCCGGCTCGTATAAAAC+AGG | - | chr8.1:49616030-49616049 | MS.gene070837:CDS | 50.0% |
| !! | AAGGGGAGGTGCTTGAAACA+AGG | - | chr8.1:49615218-49615237 | MS.gene070837:CDS | 50.0% |
| ACTCGCGAGCAGACAACTGA+TGG | + | chr8.1:49615043-49615062 | None:intergenic | 55.0% | |
| AGCAGGGTTTAAGCAAGGGG+AGG | - | chr8.1:49615204-49615223 | MS.gene070837:CDS | 55.0% | |
| CAACGTGAGGCAAAGAACCC+AGG | - | chr8.1:49617351-49617370 | MS.gene070837:intron | 55.0% | |
| TCACTCTGGTGAGGAGGCAG+TGG | - | chr8.1:49615079-49615098 | MS.gene070837:intron | 60.0% | |
| TGAGGAGGCAGTGGCGTCGC+CGG | - | chr8.1:49615088-49615107 | MS.gene070837:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 49614228 | 49617404 | 49614228 | ID=MS.gene070837 |
| chr8.1 | mRNA | 49614228 | 49617404 | 49614228 | ID=MS.gene070837.t1;Parent=MS.gene070837 |
| chr8.1 | exon | 49617354 | 49617404 | 49617354 | ID=MS.gene070837.t1.exon1;Parent=MS.gene070837.t1 |
| chr8.1 | CDS | 49617354 | 49617404 | 49617354 | ID=cds.MS.gene070837.t1;Parent=MS.gene070837.t1 |
| chr8.1 | exon | 49616834 | 49616898 | 49616834 | ID=MS.gene070837.t1.exon2;Parent=MS.gene070837.t1 |
| chr8.1 | CDS | 49616834 | 49616898 | 49616834 | ID=cds.MS.gene070837.t1;Parent=MS.gene070837.t1 |
| chr8.1 | exon | 49616704 | 49616736 | 49616704 | ID=MS.gene070837.t1.exon3;Parent=MS.gene070837.t1 |
| chr8.1 | CDS | 49616704 | 49616736 | 49616704 | ID=cds.MS.gene070837.t1;Parent=MS.gene070837.t1 |
| chr8.1 | exon | 49615695 | 49616595 | 49615695 | ID=MS.gene070837.t1.exon4;Parent=MS.gene070837.t1 |
| chr8.1 | CDS | 49615695 | 49616595 | 49615695 | ID=cds.MS.gene070837.t1;Parent=MS.gene070837.t1 |
| chr8.1 | exon | 49615119 | 49615361 | 49615119 | ID=MS.gene070837.t1.exon5;Parent=MS.gene070837.t1 |
| chr8.1 | CDS | 49615119 | 49615361 | 49615119 | ID=cds.MS.gene070837.t1;Parent=MS.gene070837.t1 |
| chr8.1 | exon | 49614228 | 49614296 | 49614228 | ID=MS.gene070837.t1.exon6;Parent=MS.gene070837.t1 |
| chr8.1 | CDS | 49614228 | 49614296 | 49614228 | ID=cds.MS.gene070837.t1;Parent=MS.gene070837.t1 |
| Gene Sequence |
| Protein sequence |
