Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071352.t1 | XP_003591092.2 | 91.8 | 85 | 7 | 0 | 59 | 143 | 185 | 269 | 8.30E-37 | 163.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071352.t1 | P36397 | 59.2 | 103 | 5 | 1 | 1 | 66 | 18 | 120 | 7.8e-20 | 98.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071352.t1 | G7I822 | 91.8 | 85 | 7 | 0 | 59 | 143 | 185 | 269 | 5.9e-37 | 163.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene071352 | 0.818119 | 2.32E-52 | -1.69E-46 |
| MS.gene049159 | MS.gene071352 | 0.842426 | 2.60E-58 | -1.69E-46 |
| MS.gene049254 | MS.gene071352 | 0.812168 | 4.86E-51 | -1.69E-46 |
| MS.gene050657 | MS.gene071352 | 0.802137 | 6.47E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene071352 | 0.806415 | 8.32E-50 | -1.69E-46 |
| MS.gene051800 | MS.gene071352 | 0.81193 | 5.47E-51 | -1.69E-46 |
| MS.gene052463 | MS.gene071352 | 0.833707 | 4.57E-56 | -1.69E-46 |
| MS.gene052516 | MS.gene071352 | 0.813489 | 2.49E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene071352 | 0.807367 | 5.23E-50 | -1.69E-46 |
| MS.gene052863 | MS.gene071352 | 0.813336 | 2.69E-51 | -1.69E-46 |
| MS.gene054236 | MS.gene071352 | 0.832502 | 9.11E-56 | -1.69E-46 |
| MS.gene05458 | MS.gene071352 | 0.809547 | 1.79E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene071352 | 0.825635 | 4.21E-54 | -1.69E-46 |
| MS.gene054775 | MS.gene071352 | 0.804975 | 1.67E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene071352 | 0.800861 | 1.18E-48 | -1.69E-46 |
| MS.gene055926 | MS.gene071352 | 0.807935 | 3.96E-50 | -1.69E-46 |
| MS.gene056174 | MS.gene071352 | 0.81525 | 1.02E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene071352 | 0.803682 | 3.10E-49 | -1.69E-46 |
| MS.gene058010 | MS.gene071352 | 0.824837 | 6.50E-54 | -1.69E-46 |
| MS.gene058625 | MS.gene071352 | 0.800791 | 1.22E-48 | -1.69E-46 |
| MS.gene059283 | MS.gene071352 | 0.802495 | 5.46E-49 | -1.69E-46 |
| MS.gene059570 | MS.gene071352 | 0.817165 | 3.80E-52 | -1.69E-46 |
| MS.gene059625 | MS.gene071352 | 0.812175 | 4.84E-51 | -1.69E-46 |
| MS.gene060011 | MS.gene071352 | 0.821612 | 3.68E-53 | -1.69E-46 |
| MS.gene060167 | MS.gene071352 | 0.805829 | 1.10E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene071352 | 0.824592 | 7.43E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071352.t1 | MTR_1g082740 | 91.765 | 85 | 7 | 0 | 59 | 143 | 185 | 269 | 3.00e-53 | 169 |
| MS.gene071352.t1 | MTR_7g109960 | 60.606 | 99 | 2 | 1 | 1 | 62 | 18 | 116 | 1.03e-28 | 103 |
| MS.gene071352.t1 | MTR_6g005820 | 60.606 | 99 | 2 | 1 | 1 | 62 | 18 | 116 | 1.07e-28 | 103 |
| MS.gene071352.t1 | MTR_1g086480 | 60.606 | 99 | 2 | 1 | 1 | 62 | 18 | 116 | 1.07e-28 | 103 |
| MS.gene071352.t1 | MTR_5g034130 | 60.606 | 99 | 2 | 1 | 1 | 62 | 18 | 116 | 1.18e-28 | 103 |
| MS.gene071352.t1 | MTR_5g034125 | 60.606 | 99 | 2 | 1 | 1 | 62 | 18 | 116 | 1.18e-28 | 103 |
| MS.gene071352.t1 | MTR_5g016540 | 56.566 | 99 | 6 | 1 | 1 | 62 | 18 | 116 | 1.40e-26 | 98.6 |
| MS.gene071352.t1 | MTR_5g007810 | 36.893 | 103 | 28 | 1 | 1 | 66 | 18 | 120 | 1.71e-14 | 67.4 |
| MS.gene071352.t1 | MTR_4g077640 | 36.893 | 103 | 28 | 1 | 1 | 66 | 18 | 120 | 4.03e-14 | 66.6 |
| MS.gene071352.t1 | MTR_5g007840 | 37.079 | 89 | 31 | 1 | 3 | 66 | 20 | 108 | 4.10e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071352.t1 | AT1G10630 | 60.606 | 99 | 2 | 1 | 1 | 62 | 18 | 116 | 9.57e-29 | 103 |
| MS.gene071352.t1 | AT1G10630 | 60.606 | 99 | 2 | 1 | 1 | 62 | 18 | 116 | 9.57e-29 | 103 |
| MS.gene071352.t1 | AT2G47170 | 60.606 | 99 | 2 | 1 | 1 | 62 | 18 | 116 | 1.13e-28 | 103 |
| MS.gene071352.t1 | AT2G47170 | 60.606 | 99 | 2 | 1 | 1 | 62 | 18 | 116 | 1.13e-28 | 103 |
| MS.gene071352.t1 | AT2G47170 | 60.606 | 99 | 2 | 1 | 1 | 62 | 18 | 116 | 1.13e-28 | 103 |
| MS.gene071352.t1 | AT3G62290 | 60.606 | 99 | 2 | 1 | 1 | 62 | 18 | 116 | 1.14e-28 | 103 |
| MS.gene071352.t1 | AT3G62290 | 60.606 | 99 | 2 | 1 | 1 | 62 | 18 | 116 | 1.14e-28 | 103 |
| MS.gene071352.t1 | AT3G62290 | 60.606 | 99 | 2 | 1 | 1 | 62 | 18 | 116 | 1.14e-28 | 103 |
| MS.gene071352.t1 | AT1G70490 | 60.606 | 99 | 2 | 1 | 1 | 62 | 18 | 116 | 1.17e-28 | 103 |
| MS.gene071352.t1 | AT1G70490 | 60.606 | 99 | 2 | 1 | 1 | 62 | 18 | 116 | 1.17e-28 | 103 |
| MS.gene071352.t1 | AT1G70490 | 60.606 | 99 | 2 | 1 | 1 | 62 | 18 | 116 | 1.17e-28 | 103 |
| MS.gene071352.t1 | AT1G70490 | 60.606 | 99 | 2 | 1 | 1 | 62 | 18 | 116 | 1.17e-28 | 103 |
| MS.gene071352.t1 | AT1G70490 | 60.606 | 99 | 2 | 1 | 1 | 62 | 18 | 116 | 1.17e-28 | 103 |
| MS.gene071352.t1 | AT1G70490 | 60.606 | 99 | 2 | 1 | 1 | 62 | 18 | 116 | 1.17e-28 | 103 |
| MS.gene071352.t1 | AT1G23490 | 60.606 | 99 | 2 | 1 | 1 | 62 | 18 | 116 | 1.17e-28 | 103 |
| MS.gene071352.t1 | AT1G70490 | 60.606 | 99 | 2 | 1 | 1 | 62 | 18 | 116 | 1.17e-28 | 103 |
| MS.gene071352.t1 | AT5G14670 | 60.606 | 99 | 2 | 1 | 1 | 62 | 18 | 116 | 1.24e-28 | 103 |
| MS.gene071352.t1 | AT5G14670 | 60.606 | 99 | 2 | 1 | 1 | 62 | 18 | 116 | 1.24e-28 | 103 |
| MS.gene071352.t1 | AT5G14670 | 60.606 | 99 | 2 | 1 | 1 | 62 | 18 | 116 | 1.61e-28 | 103 |
| MS.gene071352.t1 | AT3G05250 | 48.864 | 88 | 40 | 1 | 58 | 140 | 122 | 209 | 1.20e-19 | 81.3 |
| MS.gene071352.t1 | AT3G05250 | 48.864 | 88 | 40 | 1 | 58 | 140 | 122 | 209 | 1.20e-19 | 81.3 |
| MS.gene071352.t1 | AT2G15310 | 46.465 | 99 | 16 | 1 | 1 | 62 | 18 | 116 | 1.31e-19 | 81.3 |
| MS.gene071352.t1 | AT3G05250 | 48.864 | 88 | 40 | 1 | 58 | 140 | 191 | 278 | 3.79e-19 | 81.3 |
| MS.gene071352.t1 | AT5G17060 | 36.275 | 102 | 27 | 2 | 1 | 65 | 18 | 118 | 3.39e-13 | 63.9 |
| MS.gene071352.t1 | AT5G17060 | 36.275 | 102 | 27 | 2 | 1 | 65 | 18 | 118 | 3.39e-13 | 63.9 |
| MS.gene071352.t1 | AT3G03120 | 35.922 | 103 | 29 | 1 | 1 | 66 | 18 | 120 | 4.28e-13 | 62.4 |
| MS.gene071352.t1 | AT3G03120 | 35.922 | 103 | 29 | 1 | 1 | 66 | 18 | 120 | 6.47e-13 | 63.2 |
Find 35 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCAACTATTCCTTGCTTC+AGG | 0.313766 | 2.1:+34265809 | MS.gene071352:CDS |
| TAAATCAGCTAGGCCTTTCC+TGG | 0.324763 | 2.1:+34265757 | MS.gene071352:CDS |
| GCGGTTTATATTCAACGATT+AGG | 0.330129 | 2.1:+34265854 | MS.gene071352:CDS |
| GTCACCACCATTCCTACTAT+TGG | 0.339573 | 2.1:+34264258 | MS.gene071352:CDS |
| CGATTAGGATGGAGCTCACC+AGG | 0.401263 | 2.1:+34265869 | MS.gene071352:CDS |
| TGATGTTTCTCAAAATGAAT+TGG | 0.413515 | 2.1:+34265901 | MS.gene071352:CDS |
| ACTATTCCTTGCTTCAGGAT+TGG | 0.433302 | 2.1:+34265814 | MS.gene071352:CDS |
| AATCTCATACACAAATTTGT+CGG | 0.438859 | 2.1:-34265789 | None:intergenic |
| TCGGTTCTTGCTCCCAGGAA+AGG | 0.483050 | 2.1:-34265770 | None:intergenic |
| CATCCTATGTAGCTCATCTC+TGG | 0.489228 | 2.1:-34265264 | None:intergenic |
| TTGTCGTTGACAGCAATGAC+AGG | 0.500098 | 2.1:+34265225 | MS.gene071352:CDS |
| TCATCAAATATGTACAGGTA+TGG | 0.500375 | 2.1:-34265944 | None:intergenic |
| ATTCTCTACAAGCTCAAGCT+TGG | 0.503263 | 2.1:+34264228 | MS.gene071352:CDS |
| TTTATATTCAACGATTAGGA+TGG | 0.507524 | 2.1:+34265858 | MS.gene071352:CDS |
| ATTTGTCGGTTCTTGCTCCC+AGG | 0.509474 | 2.1:-34265775 | None:intergenic |
| CCGAGAAACTTACCAATAGT+AGG | 0.510028 | 2.1:-34264270 | None:intergenic |
| AGTCATCATCAAATATGTAC+AGG | 0.530474 | 2.1:-34265949 | None:intergenic |
| AAGCTTGAGCTTGTAGAGAA+TGG | 0.532263 | 2.1:-34264226 | None:intergenic |
| AAACTTACCAATAGTAGGAA+TGG | 0.549558 | 2.1:-34264265 | None:intergenic |
| AGGCCAGAGATGAGCTACAT+AGG | 0.552666 | 2.1:+34265261 | MS.gene071352:CDS |
| GAAGGAAATGCGAATTCTGA+TGG | 0.554686 | 2.1:+34264176 | None:intergenic |
| ATGGTTGGTCTCGATGCAGC+TGG | 0.564897 | 2.1:+34264195 | MS.gene071352:CDS |
| GAAATGCGAATTCTGATGGT+TGG | 0.586975 | 2.1:+34264180 | None:intergenic |
| TGACAGGGATAGAGTTGTTG+AGG | 0.602509 | 2.1:+34265241 | MS.gene071352:CDS |
| CAATATCCAATCCTGAAGCA+AGG | 0.603049 | 2.1:-34265820 | None:intergenic |
| ATATTTGATGATGACTCTGA+TGG | 0.611424 | 2.1:+34265956 | MS.gene071352:CDS |
| AAATCAGCTAGGCCTTTCCT+GGG | 0.618873 | 2.1:+34265758 | MS.gene071352:CDS |
| CTTACCAATAGTAGGAATGG+TGG | 0.621045 | 2.1:-34264262 | None:intergenic |
| TGTCAGTCTCTAAATCAGCT+AGG | 0.625702 | 2.1:+34265747 | MS.gene071352:CDS |
| GGATATTGAAGCTTATGATG+CGG | 0.631103 | 2.1:+34265835 | MS.gene071352:CDS |
| TGTCGTTGACAGCAATGACA+GGG | 0.631238 | 2.1:+34265226 | MS.gene071352:CDS |
| GCTACATAGGATGTTGAATG+AGG | 0.633182 | 2.1:+34265274 | MS.gene071352:CDS |
| GATTAGGATGGAGCTCACCA+GGG | 0.636076 | 2.1:+34265870 | MS.gene071352:CDS |
| CTTGAGCTTGTAGAGAATGG+TGG | 0.640954 | 2.1:-34264223 | None:intergenic |
| ATTAGGATGGAGCTCACCAG+GGG | 0.691130 | 2.1:+34265871 | MS.gene071352:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTATATTTTAATTTA+GGG | + | chr2.1:34265013-34265032 | MS.gene071352:intron | 0.0% |
| !!! | TTTATTTTATATTTTAATTT+AGG | + | chr2.1:34265012-34265031 | MS.gene071352:intron | 0.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr2.1:34265159-34265178 | None:intergenic | 100.0% |
| !! | GATTTCATTGTTAAATATAA+AGG | - | chr2.1:34264663-34264682 | None:intergenic | 15.0% |
| !!! | ATGTTTATTTTAAACTTGAT+GGG | + | chr2.1:34264881-34264900 | MS.gene071352:intron | 15.0% |
| !! | ACAATATATGACATAAAGTT+TGG | - | chr2.1:34264686-34264705 | None:intergenic | 20.0% |
| !! | CAATATATGACATAAAGTTT+GGG | - | chr2.1:34264685-34264704 | None:intergenic | 20.0% |
| !!! | CATCAAGTTTAAAATAAACA+TGG | - | chr2.1:34264882-34264901 | None:intergenic | 20.0% |
| !!! | CATGTTTATTTTAAACTTGA+TGG | + | chr2.1:34264880-34264899 | MS.gene071352:intron | 20.0% |
| !!! | TACTTTTCTTATATTCAGTT+TGG | + | chr2.1:34265297-34265316 | MS.gene071352:intron | 20.0% |
| ! | AATCTCATACACAAATTTGT+CGG | - | chr2.1:34265792-34265811 | None:intergenic | 25.0% |
| ! | ACAACTATAATGACTTAGTT+TGG | + | chr2.1:34264739-34264758 | MS.gene071352:intron | 25.0% |
| ! | GAATTGAGATAGAAAGATAT+AGG | + | chr2.1:34265376-34265395 | MS.gene071352:intron | 25.0% |
| ! | TAAACATGGATGAAATTACA+TGG | - | chr2.1:34264868-34264887 | None:intergenic | 25.0% |
| ! | TCTCAATTGAAATATGCATT+TGG | + | chr2.1:34264786-34264805 | MS.gene071352:intron | 25.0% |
| ! | TGATGTTTCTCAAAATGAAT+TGG | + | chr2.1:34265901-34265920 | MS.gene071352:CDS | 25.0% |
| ! | TTTATATTCAACGATTAGGA+TGG | + | chr2.1:34265858-34265877 | MS.gene071352:CDS | 25.0% |
| !! | ATAATGACTTAGTTTGGATT+AGG | + | chr2.1:34264745-34264764 | MS.gene071352:intron | 25.0% |
| !! | CTGTATATTAATCTGTCTTT+TGG | + | chr2.1:34265614-34265633 | MS.gene071352:intron | 25.0% |
| !!! | AATGTATGTATTGATTGCTT+TGG | + | chr2.1:34264534-34264553 | MS.gene071352:intron | 25.0% |
| !!! | TAATTAATCCATGTTTTTGC+TGG | + | chr2.1:34265571-34265590 | MS.gene071352:intron | 25.0% |
| !!! | TTTTAATTTAGGGTTCAATG+TGG | + | chr2.1:34265023-34265042 | MS.gene071352:intron | 25.0% |
| AAACTTACCAATAGTAGGAA+TGG | - | chr2.1:34264268-34264287 | None:intergenic | 30.0% | |
| AATATGATCCAGCAAAAACA+TGG | - | chr2.1:34265582-34265601 | None:intergenic | 30.0% | |
| AATTCTCTAATCTCTGAATC+AGG | + | chr2.1:34265712-34265731 | MS.gene071352:intron | 30.0% | |
| AGTCATCATCAAATATGTAC+AGG | - | chr2.1:34265952-34265971 | None:intergenic | 30.0% | |
| ATTAACAGCAACAATGATGA+AGG | - | chr2.1:34265555-34265574 | None:intergenic | 30.0% | |
| ATTCTCAACAAATTTGTGGA+TGG | - | chr2.1:34265360-34265379 | None:intergenic | 30.0% | |
| CTCAATTCTCAACAAATTTG+TGG | - | chr2.1:34265364-34265383 | None:intergenic | 30.0% | |
| GAATTAACATGCAAAGAAGT+CGG | - | chr2.1:34264575-34264594 | None:intergenic | 30.0% | |
| GTTAAGTTCATTCGTGTTTA+TGG | + | chr2.1:34264828-34264847 | MS.gene071352:intron | 30.0% | |
| TCATCAAATATGTACAGGTA+TGG | - | chr2.1:34265947-34265966 | None:intergenic | 30.0% | |
| TTAACAGCAACAATGATGAA+GGG | - | chr2.1:34265554-34265573 | None:intergenic | 30.0% | |
| TTCTAGATCATAATGTTCAC+TGG | + | chr2.1:34265467-34265486 | MS.gene071352:intron | 30.0% | |
| TTGAATAAAATACCTTGTCC+TGG | - | chr2.1:34265098-34265117 | None:intergenic | 30.0% | |
| TTGCAAATCAAAATTCACAC+AGG | - | chr2.1:34264343-34264362 | None:intergenic | 30.0% | |
| ! | TTGCAAGTTTTGCTTATGTA+TGG | + | chr2.1:34264357-34264376 | MS.gene071352:intron | 30.0% |
| !! | ATATTTGATGATGACTCTGA+TGG | + | chr2.1:34265956-34265975 | MS.gene071352:CDS | 30.0% |
| !! | TAGTTTTACAAATGCCAATC+AGG | - | chr2.1:34264509-34264528 | None:intergenic | 30.0% |
| !!! | ACTATCGATTTTATCCTGAT+TGG | + | chr2.1:34264492-34264511 | MS.gene071352:intron | 30.0% |
| AAGTTCATTCGTGTTTATGG+AGG | + | chr2.1:34264831-34264850 | MS.gene071352:intron | 35.0% | |
| ACAAATATAAGACCTCCACA+AGG | - | chr2.1:34265209-34265228 | None:intergenic | 35.0% | |
| ATTCAACTATTCCTTGCTTC+AGG | + | chr2.1:34265809-34265828 | MS.gene071352:CDS | 35.0% | |
| CAAATATAAGACCTCCACAA+GGG | - | chr2.1:34265208-34265227 | None:intergenic | 35.0% | |
| CCTACTATTGGTAAGTTTCT+CGG | + | chr2.1:34264270-34264289 | MS.gene071352:intron | 35.0% | |
| GCGGTTTATATTCAACGATT+AGG | + | chr2.1:34265854-34265873 | MS.gene071352:CDS | 35.0% | |
| GGATATTGAAGCTTATGATG+CGG | + | chr2.1:34265835-34265854 | MS.gene071352:CDS | 35.0% | |
| TAACATTGAACGTGATCAAG+TGG | + | chr2.1:34264605-34264624 | MS.gene071352:intron | 35.0% | |
| TGCTTGTACAACTCTGATTT+GGG | + | chr2.1:34265425-34265444 | MS.gene071352:intron | 35.0% | |
| TTGCTTGTACAACTCTGATT+TGG | + | chr2.1:34265424-34265443 | MS.gene071352:intron | 35.0% | |
| ! | AGAACATTAGCTTCACTGTT+TGG | + | chr2.1:34265061-34265080 | MS.gene071352:intron | 35.0% |
| ! | GAACATTAGCTTCACTGTTT+GGG | + | chr2.1:34265062-34265081 | MS.gene071352:intron | 35.0% |
| !! | TCTGTCTTTTGGTAGTTGAA+TGG | + | chr2.1:34265625-34265644 | MS.gene071352:intron | 35.0% |
| AAAGACAAAAAGGAGGAGAG+GGG | - | chr2.1:34265185-34265204 | None:intergenic | 40.0% | |
| AAGCTTGAGCTTGTAGAGAA+TGG | - | chr2.1:34264229-34264248 | None:intergenic | 40.0% | |
| AATTTCTGTCGAGCTTCTCA+TGG | + | chr2.1:34265519-34265538 | MS.gene071352:intron | 40.0% | |
| ACAAGGGAAAGACAAAAAGG+AGG | - | chr2.1:34265192-34265211 | None:intergenic | 40.0% | |
| ACTATTCCTTGCTTCAGGAT+TGG | + | chr2.1:34265814-34265833 | MS.gene071352:CDS | 40.0% | |
| ATTCTCTACAAGCTCAAGCT+TGG | + | chr2.1:34264228-34264247 | MS.gene071352:CDS | 40.0% | |
| ATTTCTGTCGAGCTTCTCAT+GGG | + | chr2.1:34265520-34265539 | MS.gene071352:intron | 40.0% | |
| CAATATCCAATCCTGAAGCA+AGG | - | chr2.1:34265823-34265842 | None:intergenic | 40.0% | |
| CACCTGTTGTGTTTAGACAT+CGG | + | chr2.1:34264432-34264451 | MS.gene071352:intron | 40.0% | |
| CCGAGAAACTTACCAATAGT+AGG | - | chr2.1:34264273-34264292 | None:intergenic | 40.0% | |
| CTTACCAATAGTAGGAATGG+TGG | - | chr2.1:34264265-34264284 | None:intergenic | 40.0% | |
| GAAAGACAAAAAGGAGGAGA+GGG | - | chr2.1:34265186-34265205 | None:intergenic | 40.0% | |
| GCTACATAGGATGTTGAATG+AGG | + | chr2.1:34265274-34265293 | MS.gene071352:CDS | 40.0% | |
| TCCACAAGGGAAAGACAAAA+AGG | - | chr2.1:34265195-34265214 | None:intergenic | 40.0% | |
| TCTCTAATCTCTGAATCAGG+AGG | + | chr2.1:34265715-34265734 | MS.gene071352:intron | 40.0% | |
| TGTCAGTCTCTAAATCAGCT+AGG | + | chr2.1:34265747-34265766 | MS.gene071352:CDS | 40.0% | |
| ! | TCCTTTTTGTCTTTCCCTTG+TGG | + | chr2.1:34265191-34265210 | MS.gene071352:intron | 40.0% |
| ! | TTTTTGTCTTTCCCTTGTGG+AGG | + | chr2.1:34265194-34265213 | MS.gene071352:intron | 40.0% |
| AAATCAGCTAGGCCTTTCCT+GGG | + | chr2.1:34265758-34265777 | MS.gene071352:CDS | 45.0% | |
| AAGACAAAAAGGAGGAGAGG+GGG | - | chr2.1:34265184-34265203 | None:intergenic | 45.0% | |
| CACACGTTTGGTCTAAGTGT+CGG | + | chr2.1:34264456-34264475 | MS.gene071352:intron | 45.0% | |
| CATCCTATGTAGCTCATCTC+TGG | - | chr2.1:34265267-34265286 | None:intergenic | 45.0% | |
| CTTGAGCTTGTAGAGAATGG+TGG | - | chr2.1:34264226-34264245 | None:intergenic | 45.0% | |
| GGAAAGACAAAAAGGAGGAG+AGG | - | chr2.1:34265187-34265206 | None:intergenic | 45.0% | |
| GTCACCACCATTCCTACTAT+TGG | + | chr2.1:34264258-34264277 | MS.gene071352:CDS | 45.0% | |
| GTCCGATGTCTAAACACAAC+AGG | - | chr2.1:34264437-34264456 | None:intergenic | 45.0% | |
| TAAATCAGCTAGGCCTTTCC+TGG | + | chr2.1:34265757-34265776 | MS.gene071352:CDS | 45.0% | |
| TGACAGGGATAGAGTTGTTG+AGG | + | chr2.1:34265241-34265260 | MS.gene071352:CDS | 45.0% | |
| TGGTTCAATGTGTGTCTCTG+TGG | + | chr2.1:34265487-34265506 | MS.gene071352:intron | 45.0% | |
| TGTCGTTGACAGCAATGACA+GGG | + | chr2.1:34265226-34265245 | MS.gene071352:CDS | 45.0% | |
| TTAGACATCGGACACACGTT+TGG | + | chr2.1:34264444-34264463 | MS.gene071352:intron | 45.0% | |
| TTGTCGTTGACAGCAATGAC+AGG | + | chr2.1:34265225-34265244 | MS.gene071352:CDS | 45.0% | |
| ! | AGCTTCACTGTTTGGGATGT+TGG | + | chr2.1:34265069-34265088 | MS.gene071352:intron | 45.0% |
| ! | GAAACATCAGTGTTTTCCCC+TGG | - | chr2.1:34265890-34265909 | None:intergenic | 45.0% |
| ! | TTCACTGTTTGGGATGTTGG+AGG | + | chr2.1:34265072-34265091 | MS.gene071352:intron | 45.0% |
| AGACAAAAAGGAGGAGAGGG+GGG | - | chr2.1:34265183-34265202 | None:intergenic | 50.0% | |
| AGGCCAGAGATGAGCTACAT+AGG | + | chr2.1:34265261-34265280 | MS.gene071352:CDS | 50.0% | |
| AGGGTTCAATGTGGAGACTG+TGG | + | chr2.1:34265032-34265051 | MS.gene071352:intron | 50.0% | |
| ATTAGGATGGAGCTCACCAG+GGG | + | chr2.1:34265871-34265890 | MS.gene071352:CDS | 50.0% | |
| GATTAGGATGGAGCTCACCA+GGG | + | chr2.1:34265870-34265889 | MS.gene071352:CDS | 50.0% | |
| !! | ATTTGTCGGTTCTTGCTCCC+AGG | - | chr2.1:34265778-34265797 | None:intergenic | 50.0% |
| !! | TGCAAGAGTGCTGCGTAGAA+AGG | + | chr2.1:34264957-34264976 | MS.gene071352:intron | 50.0% |
| ACAAAAAGGAGGAGAGGGGG+GGG | - | chr2.1:34265181-34265200 | None:intergenic | 55.0% | |
| CGATTAGGATGGAGCTCACC+AGG | + | chr2.1:34265869-34265888 | MS.gene071352:CDS | 55.0% | |
| GACAAAAAGGAGGAGAGGGG+GGG | - | chr2.1:34265182-34265201 | None:intergenic | 55.0% | |
| TCGGTTCTTGCTCCCAGGAA+AGG | - | chr2.1:34265773-34265792 | None:intergenic | 55.0% | |
| ! | TGTTTGGGATGTTGGAGGCC+AGG | + | chr2.1:34265077-34265096 | MS.gene071352:intron | 55.0% |
| !! | ATGGTTGGTCTCGATGCAGC+TGG | + | chr2.1:34264195-34264214 | MS.gene071352:CDS | 55.0% |
| AAAAAGGAGGAGAGGGGGGG+GGG | - | chr2.1:34265179-34265198 | None:intergenic | 60.0% | |
| CAAAAAGGAGGAGAGGGGGG+GGG | - | chr2.1:34265180-34265199 | None:intergenic | 60.0% | |
| GGATGTTGGAGGCCAGGACA+AGG | + | chr2.1:34265083-34265102 | MS.gene071352:intron | 60.0% | |
| AAAAGGAGGAGAGGGGGGGG+GGG | - | chr2.1:34265178-34265197 | None:intergenic | 65.0% | |
| AAAGGAGGAGAGGGGGGGGG+GGG | - | chr2.1:34265177-34265196 | None:intergenic | 70.0% | |
| AAGGAGGAGAGGGGGGGGGG+GGG | - | chr2.1:34265176-34265195 | None:intergenic | 75.0% | |
| ! | AGGAGGAGAGGGGGGGGGGG+GGG | - | chr2.1:34265175-34265194 | None:intergenic | 80.0% |
| ! | AGGAGAGGGGGGGGGGGGGG+GGG | - | chr2.1:34265172-34265191 | None:intergenic | 85.0% |
| ! | GAGGAGAGGGGGGGGGGGGG+GGG | - | chr2.1:34265173-34265192 | None:intergenic | 85.0% |
| ! | GGAGGAGAGGGGGGGGGGGG+GGG | - | chr2.1:34265174-34265193 | None:intergenic | 85.0% |
| ! | AGAGGGGGGGGGGGGGGGGG+GGG | - | chr2.1:34265169-34265188 | None:intergenic | 90.0% |
| ! | GAGAGGGGGGGGGGGGGGGG+GGG | - | chr2.1:34265170-34265189 | None:intergenic | 90.0% |
| ! | GGAGAGGGGGGGGGGGGGGG+GGG | - | chr2.1:34265171-34265190 | None:intergenic | 90.0% |
| ! | AGGGGGGGGGGGGGGGGGGG+GGG | - | chr2.1:34265167-34265186 | None:intergenic | 95.0% |
| ! | GAGGGGGGGGGGGGGGGGGG+GGG | - | chr2.1:34265168-34265187 | None:intergenic | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 34264183 | 34265988 | 34264183 | ID=MS.gene071352 |
| chr2.1 | mRNA | 34264183 | 34265988 | 34264183 | ID=MS.gene071352.t1;Parent=MS.gene071352 |
| chr2.1 | exon | 34264183 | 34264279 | 34264183 | ID=MS.gene071352.t1.exon1;Parent=MS.gene071352.t1 |
| chr2.1 | CDS | 34264183 | 34264279 | 34264183 | ID=cds.MS.gene071352.t1;Parent=MS.gene071352.t1 |
| chr2.1 | exon | 34265216 | 34265295 | 34265216 | ID=MS.gene071352.t1.exon2;Parent=MS.gene071352.t1 |
| chr2.1 | CDS | 34265216 | 34265295 | 34265216 | ID=cds.MS.gene071352.t1;Parent=MS.gene071352.t1 |
| chr2.1 | exon | 34265734 | 34265988 | 34265734 | ID=MS.gene071352.t1.exon3;Parent=MS.gene071352.t1 |
| chr2.1 | CDS | 34265734 | 34265988 | 34265734 | ID=cds.MS.gene071352.t1;Parent=MS.gene071352.t1 |
| Gene Sequence |
| Protein sequence |
