Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071403.t1 | XP_003593727.1 | 95.7 | 188 | 8 | 0 | 1 | 188 | 4 | 191 | 1.90E-105 | 391.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071403.t1 | Q6NMR9 | 72.0 | 186 | 45 | 2 | 1 | 184 | 3 | 183 | 6.6e-75 | 281.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071403.t1 | G7IK96 | 95.7 | 188 | 8 | 0 | 1 | 188 | 4 | 191 | 1.4e-105 | 391.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049298 | MS.gene071403 | 0.804695 | 1.91E-49 | -1.69E-46 |
| MS.gene04932 | MS.gene071403 | 0.813187 | 2.91E-51 | -1.69E-46 |
| MS.gene050338 | MS.gene071403 | 0.814658 | 1.38E-51 | -1.69E-46 |
| MS.gene050444 | MS.gene071403 | -0.800863 | 1.18E-48 | -1.69E-46 |
| MS.gene050809 | MS.gene071403 | 0.801712 | 7.91E-49 | -1.69E-46 |
| MS.gene05104 | MS.gene071403 | 0.807084 | 6.01E-50 | -1.69E-46 |
| MS.gene05240 | MS.gene071403 | 0.803327 | 3.68E-49 | -1.69E-46 |
| MS.gene052702 | MS.gene071403 | 0.802527 | 5.38E-49 | -1.69E-46 |
| MS.gene054742 | MS.gene071403 | 0.801508 | 8.71E-49 | -1.69E-46 |
| MS.gene054884 | MS.gene071403 | 0.812076 | 5.08E-51 | -1.69E-46 |
| MS.gene054941 | MS.gene071403 | 0.802399 | 5.71E-49 | -1.69E-46 |
| MS.gene056198 | MS.gene071403 | 0.815416 | 9.35E-52 | -1.69E-46 |
| MS.gene056387 | MS.gene071403 | -0.833873 | 4.15E-56 | -1.69E-46 |
| MS.gene05652 | MS.gene071403 | 0.821109 | 4.81E-53 | -1.69E-46 |
| MS.gene056688 | MS.gene071403 | 0.839885 | 1.21E-57 | -1.69E-46 |
| MS.gene056694 | MS.gene071403 | 0.817422 | 3.32E-52 | -1.69E-46 |
| MS.gene056697 | MS.gene071403 | 0.820422 | 6.92E-53 | -1.69E-46 |
| MS.gene056856 | MS.gene071403 | 0.830198 | 3.36E-55 | -1.69E-46 |
| MS.gene057717 | MS.gene071403 | 0.851208 | 1.03E-60 | -1.69E-46 |
| MS.gene058416 | MS.gene071403 | 0.823871 | 1.10E-53 | -1.69E-46 |
| MS.gene058418 | MS.gene071403 | 0.808733 | 2.68E-50 | -1.69E-46 |
| MS.gene05926 | MS.gene071403 | 0.859298 | 4.56E-63 | -1.69E-46 |
| MS.gene05960 | MS.gene071403 | 0.801376 | 9.27E-49 | -1.69E-46 |
| MS.gene059699 | MS.gene071403 | 0.823654 | 1.23E-53 | -1.69E-46 |
| MS.gene059703 | MS.gene071403 | 0.824421 | 8.15E-54 | -1.69E-46 |
| MS.gene060405 | MS.gene071403 | 0.820536 | 6.51E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071403.t1 | MTR_2g015500 | 95.745 | 188 | 8 | 0 | 1 | 188 | 4 | 191 | 5.64e-138 | 385 |
| MS.gene071403.t1 | MTR_2g015510 | 83.511 | 188 | 29 | 1 | 1 | 188 | 5 | 190 | 7.94e-119 | 337 |
| MS.gene071403.t1 | MTR_2g015480 | 72.549 | 153 | 29 | 3 | 9 | 160 | 65 | 205 | 1.10e-70 | 217 |
| MS.gene071403.t1 | MTR_7g068550 | 43.011 | 186 | 96 | 3 | 1 | 186 | 6 | 181 | 2.68e-46 | 152 |
| MS.gene071403.t1 | MTR_4g016510 | 39.785 | 186 | 104 | 3 | 1 | 186 | 6 | 183 | 4.36e-43 | 145 |
| MS.gene071403.t1 | MTR_7g068530 | 40.323 | 186 | 101 | 3 | 1 | 186 | 6 | 181 | 4.22e-42 | 142 |
| MS.gene071403.t1 | MTR_4g105680 | 44.118 | 170 | 86 | 2 | 22 | 188 | 51 | 214 | 3.36e-40 | 137 |
| MS.gene071403.t1 | MTR_7g068460 | 39.247 | 186 | 103 | 4 | 1 | 186 | 33 | 208 | 3.70e-40 | 137 |
| MS.gene071403.t1 | MTR_7g068500 | 38.710 | 186 | 104 | 4 | 1 | 186 | 32 | 207 | 2.10e-38 | 133 |
| MS.gene071403.t1 | MTR_7g068470 | 37.838 | 185 | 103 | 6 | 1 | 184 | 2 | 175 | 7.00e-37 | 128 |
| MS.gene071403.t1 | MTR_7g068470 | 38.378 | 185 | 98 | 7 | 1 | 184 | 2 | 171 | 2.32e-36 | 127 |
| MS.gene071403.t1 | MTR_7g068450 | 36.126 | 191 | 106 | 4 | 1 | 186 | 2 | 181 | 4.90e-35 | 124 |
| MS.gene071403.t1 | MTR_3g070460 | 37.097 | 186 | 105 | 5 | 1 | 184 | 6 | 181 | 5.87e-35 | 124 |
| MS.gene071403.t1 | MTR_4g016500 | 32.484 | 157 | 65 | 5 | 30 | 186 | 277 | 392 | 1.19e-18 | 82.8 |
| MS.gene071403.t1 | MTR_7g068520 | 50.847 | 59 | 28 | 1 | 1 | 59 | 3 | 60 | 1.29e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071403.t1 | AT5G45920 | 72.043 | 186 | 45 | 2 | 1 | 184 | 3 | 183 | 6.99e-97 | 279 |
| MS.gene071403.t1 | AT5G45920 | 72.043 | 186 | 45 | 2 | 1 | 184 | 3 | 183 | 6.99e-97 | 279 |
| MS.gene071403.t1 | AT5G45920 | 72.043 | 186 | 45 | 2 | 1 | 184 | 3 | 183 | 1.45e-96 | 280 |
| MS.gene071403.t1 | AT5G45920 | 72.043 | 186 | 45 | 2 | 1 | 184 | 3 | 183 | 1.45e-96 | 280 |
| MS.gene071403.t1 | AT5G62930 | 51.832 | 191 | 83 | 2 | 1 | 188 | 2 | 186 | 3.70e-65 | 200 |
| MS.gene071403.t1 | AT5G62930 | 51.832 | 191 | 83 | 2 | 1 | 188 | 28 | 212 | 1.23e-64 | 200 |
| MS.gene071403.t1 | AT2G38180 | 40.984 | 183 | 98 | 3 | 1 | 183 | 6 | 178 | 1.05e-39 | 137 |
| MS.gene071403.t1 | AT3G11210 | 38.298 | 188 | 104 | 4 | 1 | 186 | 6 | 183 | 7.47e-39 | 134 |
| MS.gene071403.t1 | AT5G62930 | 48.031 | 127 | 63 | 1 | 65 | 188 | 2 | 128 | 7.44e-36 | 124 |
Find 53 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGCTTCATTAGTCCTTTC+AGG | 0.209931 | 2.4:+69542410 | None:intergenic |
| GTCAGGGAACTGTTGCATTT+TGG | 0.294369 | 2.4:+69542319 | None:intergenic |
| CTCCATTGTCTCCTTCTTCA+AGG | 0.304012 | 2.4:-69543708 | MS.gene071403:intron |
| TCCTTTGATGTTGGAGGATG+GGG | 0.334235 | 2.4:-69544473 | MS.gene071403:CDS |
| CAAAGCAATCGGAGCAGTTT+CGG | 0.402911 | 2.4:+69543823 | None:intergenic |
| GTCCTTTCAGGAAGACCCTC+TGG | 0.415276 | 2.4:+69542422 | None:intergenic |
| CTGTCACCGCCCTGTGACAC+AGG | 0.417724 | 2.4:+69543851 | None:intergenic |
| CCCTCTGGATTATTCTCAAA+TGG | 0.419053 | 2.4:+69542437 | None:intergenic |
| ATATTCCTTACATTGATCTC+TGG | 0.444800 | 2.4:-69542343 | MS.gene071403:CDS |
| GAGTCGTGCAACTTCATCAA+TGG | 0.457432 | 2.4:+69542596 | None:intergenic |
| TTGAAAAGCAGAGCATCTAC+TGG | 0.476943 | 2.4:+69543766 | None:intergenic |
| ATCCTTTGATGTTGGAGGAT+GGG | 0.480890 | 2.4:-69544474 | MS.gene071403:CDS |
| AAATGCAACAGTTCCCTGAC+TGG | 0.492869 | 2.4:-69542316 | MS.gene071403:CDS |
| ATGAGGATGACTTTACTTGT+CGG | 0.494758 | 2.4:+69542630 | None:intergenic |
| AGTCGTGCAACTTCATCAAT+GGG | 0.507323 | 2.4:+69542597 | None:intergenic |
| AAGAAAACAGTCAAAGCAAT+CGG | 0.513354 | 2.4:+69543812 | None:intergenic |
| CAGGCAGATGTGGTGCTAAG+AGG | 0.513358 | 2.4:-69543926 | MS.gene071403:CDS |
| ACTGAGGAATCCTTTGATGT+TGG | 0.516117 | 2.4:-69544482 | MS.gene071403:CDS |
| AGGCAGATGTGGTGCTAAGA+GGG | 0.519656 | 2.4:-69543925 | MS.gene071403:CDS |
| CAACACGAGGTGGGCACTGA+AGG | 0.520803 | 2.4:-69543891 | MS.gene071403:CDS |
| TTGATGAAGTTGCACGACTC+AGG | 0.521821 | 2.4:-69542593 | MS.gene071403:intron |
| CAATGGGAGGAGGAGTTATG+AGG | 0.526221 | 2.4:+69542613 | None:intergenic |
| AATCCTTTGATGTTGGAGGA+TGG | 0.530232 | 2.4:-69544475 | MS.gene071403:CDS |
| TTGGTCCAGAGATCAATGTA+AGG | 0.532044 | 2.4:+69542338 | None:intergenic |
| GAGGAATCCTTTGATGTTGG+AGG | 0.547556 | 2.4:-69544479 | MS.gene071403:CDS |
| TTCTCCTTGTATTCATGTAG+AGG | 0.550295 | 2.4:+69543737 | None:intergenic |
| ATCCAGAGGGTCTTCCTGAA+AGG | 0.553423 | 2.4:-69542424 | MS.gene071403:CDS |
| GTGTCACAGGGCGGTGACAG+TGG | 0.555563 | 2.4:-69543848 | MS.gene071403:CDS |
| GTGGTGCTAAGAGGGTATAG+TGG | 0.556252 | 2.4:-69543917 | MS.gene071403:CDS |
| CCTTTGAATTTCAGAAGCGA+TGG | 0.564667 | 2.4:-69542653 | MS.gene071403:intron |
| ACCCCATCCTCCAACATCAA+AGG | 0.571101 | 2.4:+69544472 | None:intergenic |
| TCTCCTTGTATTCATGTAGA+GGG | 0.573844 | 2.4:+69543738 | None:intergenic |
| TGCCAACTATTTCTCACGCA+CGG | 0.583852 | 2.4:-69544441 | MS.gene071403:intron |
| TACCGTGCGTGAGAAATAGT+TGG | 0.585214 | 2.4:+69544439 | None:intergenic |
| TGTCCCTCTACATGAATACA+AGG | 0.587200 | 2.4:-69543741 | MS.gene071403:CDS |
| GGTATGGGTTACCTTGAAGA+AGG | 0.588405 | 2.4:+69543697 | None:intergenic |
| TGGTGCTAAGAGGGTATAGT+GGG | 0.591667 | 2.4:-69543916 | MS.gene071403:CDS |
| GAAAGGACTAATGAAGCTGC+TGG | 0.598460 | 2.4:-69542407 | MS.gene071403:CDS |
| GCAACTTCATCAATGGGAGG+AGG | 0.607044 | 2.4:+69542603 | None:intergenic |
| TGAAAAGCAGAGCATCTACT+GGG | 0.610569 | 2.4:+69543767 | None:intergenic |
| TACCTTGAAGAAGGAGACAA+TGG | 0.615115 | 2.4:+69543706 | None:intergenic |
| AGAAGGAGACAATGGAGCAA+AGG | 0.621194 | 2.4:+69543714 | None:intergenic |
| GAGGTGGGCACTGAAGGTGT+TGG | 0.628300 | 2.4:-69543885 | MS.gene071403:CDS |
| GTAAGGAATATGACATTCAG+TGG | 0.633665 | 2.4:+69542355 | None:intergenic |
| CCATTTGAGAATAATCCAGA+GGG | 0.637647 | 2.4:-69542437 | MS.gene071403:CDS |
| TGTCACCGCCCTGTGACACA+GGG | 0.639199 | 2.4:+69543852 | None:intergenic |
| TGCTAGAGCATGCATTGCTG+TGG | 0.657710 | 2.4:-69542378 | MS.gene071403:CDS |
| TAACATGTAACAGGCAGATG+TGG | 0.662178 | 2.4:-69543936 | MS.gene071403:intron |
| TCCATTTGAGAATAATCCAG+AGG | 0.677789 | 2.4:-69542438 | MS.gene071403:CDS |
| CGTGCAACTTCATCAATGGG+AGG | 0.679277 | 2.4:+69542600 | None:intergenic |
| GGTATAGTGGGTACAACACG+AGG | 0.696277 | 2.4:-69543904 | MS.gene071403:CDS |
| TAGTGGGTACAACACGAGGT+GGG | 0.715177 | 2.4:-69543900 | MS.gene071403:CDS |
| ATAGTGGGTACAACACGAGG+TGG | 0.732833 | 2.4:-69543901 | MS.gene071403:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATCATATTACAATT+TGG | + | chr2.4:69542533-69542552 | None:intergenic | 10.0% |
| !! | AATAAATCATATTACAATTT+GGG | + | chr2.4:69542532-69542551 | None:intergenic | 10.0% |
| !!! | AATATTTTAATTTCAATTCT+AGG | - | chr2.4:69544099-69544118 | MS.gene071403:intron | 10.0% |
| !! | TATAAACAAAACATATAATG+TGG | + | chr2.4:69542472-69542491 | None:intergenic | 15.0% |
| !! | TTAAACATATAATTCTATAG+AGG | - | chr2.4:69544312-69544331 | MS.gene071403:intron | 15.0% |
| !!! | GAATAAATTTAGAGTTTAAT+GGG | - | chr2.4:69543152-69543171 | MS.gene071403:intron | 15.0% |
| !!! | TGAATAAATTTAGAGTTTAA+TGG | - | chr2.4:69543151-69543170 | MS.gene071403:intron | 15.0% |
| !! | AAAATCTAAAAACAGAATGT+GGG | + | chr2.4:69542788-69542807 | None:intergenic | 20.0% |
| !! | AAATTTATTCAAACTCTGTA+CGG | + | chr2.4:69543142-69543161 | None:intergenic | 20.0% |
| !! | AATTATACCATTTATACAAG+AGG | + | chr2.4:69544125-69544144 | None:intergenic | 20.0% |
| !! | CTTGTATAAATGGTATAATT+AGG | - | chr2.4:69544125-69544144 | MS.gene071403:intron | 20.0% |
| !! | TAAAATCTAAAAACAGAATG+TGG | + | chr2.4:69542789-69542808 | None:intergenic | 20.0% |
| !! | TATACCTACATATACATTTA+AGG | + | chr2.4:69544065-69544084 | None:intergenic | 20.0% |
| !! | TGGAAAAAAGTTTATTTAAG+AGG | - | chr2.4:69544518-69544537 | MS.gene071403:CDS | 20.0% |
| !! | TTATCCTTAAATGTATATGT+AGG | - | chr2.4:69544058-69544077 | MS.gene071403:intron | 20.0% |
| !!! | AAGTTTGAATCTTTTTGTAA+TGG | - | chr2.4:69542814-69542833 | MS.gene071403:intron | 20.0% |
| !!! | AGTTTGAATCTTTTTGTAAT+GGG | - | chr2.4:69542815-69542834 | MS.gene071403:intron | 20.0% |
| ! | AAAGAACAATGATCCTTTAT+TGG | + | chr2.4:69543236-69543255 | None:intergenic | 25.0% |
| ! | AAGAACAATGATCCTTTATT+GGG | + | chr2.4:69543235-69543254 | None:intergenic | 25.0% |
| ! | AATTATGTTATCAGTTGGTT+TGG | - | chr2.4:69543841-69543860 | MS.gene071403:CDS | 25.0% |
| ! | AATTTATTCAAACTCTGTAC+GGG | + | chr2.4:69543141-69543160 | None:intergenic | 25.0% |
| ! | AATTTGGAGGTTAATACAAT+AGG | - | chr2.4:69543585-69543604 | MS.gene071403:intron | 25.0% |
| ! | ATCTTTGATCCTTAAAGAAA+GGG | + | chr2.4:69543948-69543967 | None:intergenic | 25.0% |
| ! | TATCTTTGATCCTTAAAGAA+AGG | + | chr2.4:69543949-69543968 | None:intergenic | 25.0% |
| ! | TATTATTGATCATACAGTAG+TGG | + | chr2.4:69543640-69543659 | None:intergenic | 25.0% |
| ! | TCACCAAAAAGATATATTTG+TGG | + | chr2.4:69542305-69542324 | None:intergenic | 25.0% |
| ! | TCTGCTTATAACATTCTTAA+AGG | - | chr2.4:69543969-69543988 | MS.gene071403:intron | 25.0% |
| ! | TTATAATGTTTGTAAAGCTG+TGG | - | chr2.4:69543500-69543519 | MS.gene071403:intron | 25.0% |
| !! | GTTTGAATCTTTTTGTAATG+GGG | - | chr2.4:69542816-69542835 | MS.gene071403:intron | 25.0% |
| !!! | AAAATAGTTTTGATCTCTTG+TGG | - | chr2.4:69543294-69543313 | MS.gene071403:intron | 25.0% |
| !!! | AAATAAACTTTTTTCCAGTC+AGG | + | chr2.4:69544515-69544534 | None:intergenic | 25.0% |
| !!! | AATAAACTTTTTTCCAGTCA+GGG | + | chr2.4:69544514-69544533 | None:intergenic | 25.0% |
| !!! | TCTTTTGAAAAGGATAAATG+AGG | - | chr2.4:69542847-69542866 | MS.gene071403:intron | 25.0% |
| AAAGCAAAACAAAGCAAGAA+TGG | + | chr2.4:69542405-69542424 | None:intergenic | 30.0% | |
| AAAGGATCATTGTTCTTTAG+TGG | - | chr2.4:69543238-69543257 | MS.gene071403:intron | 30.0% | |
| AACTGATAACATAATTGCAC+AGG | + | chr2.4:69543837-69543856 | None:intergenic | 30.0% | |
| AAGAAAACAGTCAAAGCAAT+CGG | + | chr2.4:69543005-69543024 | None:intergenic | 30.0% | |
| ACAATAGGTGATGTTAAATG+TGG | - | chr2.4:69543600-69543619 | MS.gene071403:intron | 30.0% | |
| ATATTCCTTACATTGATCTC+TGG | - | chr2.4:69544471-69544490 | MS.gene071403:CDS | 30.0% | |
| ATGAACATTGATCAACCTAT+GGG | + | chr2.4:69544019-69544038 | None:intergenic | 30.0% | |
| CACATTCTAATAATGTTGCA+TGG | - | chr2.4:69543423-69543442 | MS.gene071403:intron | 30.0% | |
| GTTGACATTGAGTTTATAAG+TGG | - | chr2.4:69542581-69542600 | MS.gene071403:intron | 30.0% | |
| GTTTGTTTGTAACATGTAAC+AGG | - | chr2.4:69542869-69542888 | MS.gene071403:intron | 30.0% | |
| TGTGCAATTATGTTATCAGT+TGG | - | chr2.4:69543836-69543855 | MS.gene071403:CDS | 30.0% | |
| ! | AAGAAAGAAGCATGATGTTT+AGG | + | chr2.4:69543797-69543816 | None:intergenic | 30.0% |
| ! | AGGCCACAAATATATCTTTT+TGG | - | chr2.4:69542299-69542318 | MS.gene071403:CDS | 30.0% |
| ! | ATTGCTTTGACTGTTTTCTT+TGG | - | chr2.4:69543005-69543024 | MS.gene071403:intron | 30.0% |
| ! | TTGCTTTGACTGTTTTCTTT+GGG | - | chr2.4:69543006-69543025 | MS.gene071403:intron | 30.0% |
| ! | TTTATTAGTCTCATCGTGTT+AGG | - | chr2.4:69542501-69542520 | MS.gene071403:intron | 30.0% |
| !! | GGTTTGTGTTTCTTTTGAAA+AGG | - | chr2.4:69542837-69542856 | MS.gene071403:intron | 30.0% |
| !!! | AAGTTTTTTTTACACTTGCG+TGG | - | chr2.4:69543993-69544012 | MS.gene071403:intron | 30.0% |
| AAGAATGGTCCCTTTCTTTA+AGG | - | chr2.4:69543936-69543955 | MS.gene071403:intron | 35.0% | |
| AAGCATGGAATCAAACTCTT+TGG | + | chr2.4:69543669-69543688 | None:intergenic | 35.0% | |
| ACTGTGTTGAAACCCAATAA+AGG | - | chr2.4:69543220-69543239 | MS.gene071403:intron | 35.0% | |
| AGTGTCTGATCTTGATCAAA+CGG | - | chr2.4:69542699-69542718 | MS.gene071403:intron | 35.0% | |
| ATGAGGATGACTTTACTTGT+CGG | + | chr2.4:69544187-69544206 | None:intergenic | 35.0% | |
| ATTCATTGGAATCACGCATT+CGG | - | chr2.4:69542622-69542641 | MS.gene071403:CDS | 35.0% | |
| CATGAACATTGATCAACCTA+TGG | + | chr2.4:69544020-69544039 | None:intergenic | 35.0% | |
| CCATTTGAGAATAATCCAGA+GGG | - | chr2.4:69544377-69544396 | MS.gene071403:intron | 35.0% | |
| GAGTTTATAAGTGGTGAAAC+TGG | - | chr2.4:69542590-69542609 | MS.gene071403:intron | 35.0% | |
| GTAAGGAATATGACATTCAG+TGG | + | chr2.4:69544462-69544481 | None:intergenic | 35.0% | |
| TCATGTGAGCTGTTAAGTAT+AGG | - | chr2.4:69543866-69543885 | MS.gene071403:CDS | 35.0% | |
| TCCATTTGAGAATAATCCAG+AGG | - | chr2.4:69544376-69544395 | MS.gene071403:intron | 35.0% | |
| TCTCCTTGTATTCATGTAGA+GGG | + | chr2.4:69543079-69543098 | None:intergenic | 35.0% | |
| TGGATTTGATAAGTGTGCTT+TGG | - | chr2.4:69543314-69543333 | MS.gene071403:intron | 35.0% | |
| TTCTAGGCCTCTTGTATAAA+TGG | - | chr2.4:69544115-69544134 | MS.gene071403:intron | 35.0% | |
| TTCTCCTTGTATTCATGTAG+AGG | + | chr2.4:69543080-69543099 | None:intergenic | 35.0% | |
| ! | TCTTTCTTTGTGCCATTACT+TGG | - | chr2.4:69543809-69543828 | MS.gene071403:CDS | 35.0% |
| ! | TGCTTTGACTGTTTTCTTTG+GGG | - | chr2.4:69543007-69543026 | MS.gene071403:intron | 35.0% |
| ! | TTGATTCCATGCTTTTCTGT+GGG | - | chr2.4:69543675-69543694 | MS.gene071403:intron | 35.0% |
| ! | TTTGATTCCATGCTTTTCTG+TGG | - | chr2.4:69543674-69543693 | MS.gene071403:intron | 35.0% |
| !! | CGACTCAGGTATTGTTTTAT+TGG | - | chr2.4:69544235-69544254 | MS.gene071403:intron | 35.0% |
| AATCCTTTGATGTTGGAGGA+TGG | - | chr2.4:69542339-69542358 | MS.gene071403:CDS | 40.0% | |
| AATGGGTATGCACACAATGA+GGG | - | chr2.4:69543169-69543188 | MS.gene071403:intron | 40.0% | |
| ACTGAGGAATCCTTTGATGT+TGG | - | chr2.4:69542332-69542351 | MS.gene071403:CDS | 40.0% | |
| ACTGGATTCCATGCATTCAT+TGG | - | chr2.4:69542608-69542627 | MS.gene071403:CDS | 40.0% | |
| AGTCGTGCAACTTCATCAAT+GGG | + | chr2.4:69544220-69544239 | None:intergenic | 40.0% | |
| ATAGGCATGCATGTTAGCAA+TGG | - | chr2.4:69543884-69543903 | MS.gene071403:CDS | 40.0% | |
| ATCCTTTGATGTTGGAGGAT+GGG | - | chr2.4:69542340-69542359 | MS.gene071403:CDS | 40.0% | |
| ATTCAAACTCTGTACGGGTA+TGG | + | chr2.4:69543136-69543155 | None:intergenic | 40.0% | |
| ATTGCACAGGAACCAAGTAA+TGG | + | chr2.4:69543824-69543843 | None:intergenic | 40.0% | |
| CAAATTCCTGAAATCCCACA+GGG | + | chr2.4:69543571-69543590 | None:intergenic | 40.0% | |
| CCCTCTGGATTATTCTCAAA+TGG | + | chr2.4:69544380-69544399 | None:intergenic | 40.0% | |
| CCTTTGAATTTCAGAAGCGA+TGG | - | chr2.4:69544161-69544180 | MS.gene071403:intron | 40.0% | |
| CTCAAATTGTCGACCACTTA+TGG | + | chr2.4:69542755-69542774 | None:intergenic | 40.0% | |
| GAGAACGAAAAGTTTCTCTC+TGG | - | chr2.4:69543475-69543494 | MS.gene071403:intron | 40.0% | |
| GGAAAACCAACCTCTACTTT+AGG | - | chr2.4:69543908-69543927 | MS.gene071403:CDS | 40.0% | |
| GTACGAGATGCTTGTGTAAA+AGG | - | chr2.4:69543708-69543727 | MS.gene071403:intron | 40.0% | |
| GTGATGTTAAATGTGGACTC+TGG | - | chr2.4:69543607-69543626 | MS.gene071403:intron | 40.0% | |
| TAACATGTAACAGGCAGATG+TGG | - | chr2.4:69542878-69542897 | MS.gene071403:intron | 40.0% | |
| TACCTTGAAGAAGGAGACAA+TGG | + | chr2.4:69543111-69543130 | None:intergenic | 40.0% | |
| TAGGCATGCATGTTAGCAAT+GGG | - | chr2.4:69543885-69543904 | MS.gene071403:CDS | 40.0% | |
| TGTCCCTCTACATGAATACA+AGG | - | chr2.4:69543073-69543092 | MS.gene071403:intron | 40.0% | |
| TTCAAACTCTGTACGGGTAT+GGG | + | chr2.4:69543135-69543154 | None:intergenic | 40.0% | |
| TTCATTGGAATCACGCATTC+GGG | - | chr2.4:69542623-69542642 | MS.gene071403:CDS | 40.0% | |
| TTCTTCCACTCCTAAAGTAG+AGG | + | chr2.4:69543921-69543940 | None:intergenic | 40.0% | |
| TTGGTCCAGAGATCAATGTA+AGG | + | chr2.4:69544479-69544498 | None:intergenic | 40.0% | |
| TTTGGTCGCGTATATATTGC+AGG | - | chr2.4:69543332-69543351 | MS.gene071403:intron | 40.0% | |
| ! | CTACTTTAGGAGTGGAAGAA+TGG | - | chr2.4:69543921-69543940 | MS.gene071403:CDS | 40.0% |
| ! | TAATGGGTATGCACACAATG+AGG | - | chr2.4:69543168-69543187 | MS.gene071403:intron | 40.0% |
| ! | TGAAAAGCAGAGCATCTACT+GGG | + | chr2.4:69543050-69543069 | None:intergenic | 40.0% |
| ! | TTGAAAAGCAGAGCATCTAC+TGG | + | chr2.4:69543051-69543070 | None:intergenic | 40.0% |
| !! | CCATCGCTTCTGAAATTCAA+AGG | + | chr2.4:69544164-69544183 | None:intergenic | 40.0% |
| !! | TTTTGGTGACTCAATCACTG+AGG | - | chr2.4:69542316-69542335 | MS.gene071403:CDS | 40.0% |
| AAATGCAACAGTTCCCTGAC+TGG | - | chr2.4:69544498-69544517 | MS.gene071403:CDS | 45.0% | |
| AATACCTGAATGCGAAGAGC+CGG | - | chr2.4:69542727-69542746 | MS.gene071403:intron | 45.0% | |
| ACGGCTATAGTGTAGGACTA+GGG | - | chr2.4:69543531-69543550 | MS.gene071403:intron | 45.0% | |
| AGAAGGAGACAATGGAGCAA+AGG | + | chr2.4:69543103-69543122 | None:intergenic | 45.0% | |
| AGGCATGCATGTTAGCAATG+GGG | - | chr2.4:69543886-69543905 | MS.gene071403:CDS | 45.0% | |
| CAAAGCAATCGGAGCAGTTT+CGG | + | chr2.4:69542994-69543013 | None:intergenic | 45.0% | |
| CCAAATTCCTGAAATCCCAC+AGG | + | chr2.4:69543572-69543591 | None:intergenic | 45.0% | |
| CCTGTGGGATTTCAGGAATT+TGG | - | chr2.4:69543569-69543588 | MS.gene071403:intron | 45.0% | |
| CTCCATTGTCTCCTTCTTCA+AGG | - | chr2.4:69543106-69543125 | MS.gene071403:intron | 45.0% | |
| GAAAGGACTAATGAAGCTGC+TGG | - | chr2.4:69544407-69544426 | MS.gene071403:intron | 45.0% | |
| GAGGAATCCTTTGATGTTGG+AGG | - | chr2.4:69542335-69542354 | MS.gene071403:CDS | 45.0% | |
| GAGTCGTGCAACTTCATCAA+TGG | + | chr2.4:69544221-69544240 | None:intergenic | 45.0% | |
| GCAGCTTCATTAGTCCTTTC+AGG | + | chr2.4:69544407-69544426 | None:intergenic | 45.0% | |
| GCGTGATTCCAATGAATGCA+TGG | + | chr2.4:69542619-69542638 | None:intergenic | 45.0% | |
| GTATGCACACAATGAGGGAT+TGG | - | chr2.4:69543174-69543193 | MS.gene071403:intron | 45.0% | |
| GTGGGATTTCAGGAATTTGG+AGG | - | chr2.4:69543572-69543591 | MS.gene071403:intron | 45.0% | |
| TACCGTGCGTGAGAAATAGT+TGG | + | chr2.4:69542378-69542397 | None:intergenic | 45.0% | |
| TCCACTCCTAAAGTAGAGGT+TGG | + | chr2.4:69543917-69543936 | None:intergenic | 45.0% | |
| TCCATTCCCACAGAAAAGCA+TGG | + | chr2.4:69543684-69543703 | None:intergenic | 45.0% | |
| TCCTTTGATGTTGGAGGATG+GGG | - | chr2.4:69542341-69542360 | MS.gene071403:CDS | 45.0% | |
| TTGATGAAGTTGCACGACTC+AGG | - | chr2.4:69544221-69544240 | MS.gene071403:intron | 45.0% | |
| TTGTCGACCACTTATGGATC+CGG | + | chr2.4:69542749-69542768 | None:intergenic | 45.0% | |
| TTGTTCTTTAGTGGCACAGC+AGG | - | chr2.4:69543247-69543266 | MS.gene071403:intron | 45.0% | |
| ! | ACCAACCTCTACTTTAGGAG+TGG | - | chr2.4:69543913-69543932 | MS.gene071403:CDS | 45.0% |
| ! | AGAGTTTTCCCTGTGTCACA+GGG | - | chr2.4:69542954-69542973 | MS.gene071403:intron | 45.0% |
| ! | AGGGATTGGCACAGATTATC+AGG | - | chr2.4:69543188-69543207 | MS.gene071403:intron | 45.0% |
| ! | CTTTTCTGTGGGAATGGAGT+TGG | - | chr2.4:69543686-69543705 | MS.gene071403:intron | 45.0% |
| ! | GGTATGGGTTACCTTGAAGA+AGG | + | chr2.4:69543120-69543139 | None:intergenic | 45.0% |
| ! | GTCAGGGAACTGTTGCATTT+TGG | + | chr2.4:69544498-69544517 | None:intergenic | 45.0% |
| ! | TCCATGCTTTTCTGTGGGAA+TGG | - | chr2.4:69543680-69543699 | MS.gene071403:intron | 45.0% |
| ! | TGCCAACTATTTCTCACGCA+CGG | - | chr2.4:69542373-69542392 | MS.gene071403:CDS | 45.0% |
| ! | TGGTGCTAAGAGGGTATAGT+GGG | - | chr2.4:69542898-69542917 | MS.gene071403:intron | 45.0% |
| !! | TCTTCGCATTCAGGTATTGG+TGG | + | chr2.4:69542725-69542744 | None:intergenic | 45.0% |
| !!! | AATAATAATTATTTTTCATT+TGG | - | chr2.4:69543362-69543381 | MS.gene071403:intron | 5.0% |
| ACAGTGCACGGCTATAGTGT+AGG | - | chr2.4:69543524-69543543 | MS.gene071403:intron | 50.0% | |
| ACCCCATCCTCCAACATCAA+AGG | + | chr2.4:69542345-69542364 | None:intergenic | 50.0% | |
| ATCCAGAGGGTCTTCCTGAA+AGG | - | chr2.4:69544390-69544409 | MS.gene071403:intron | 50.0% | |
| CAATGGGAGGAGGAGTTATG+AGG | + | chr2.4:69544204-69544223 | None:intergenic | 50.0% | |
| CACGGCTATAGTGTAGGACT+AGG | - | chr2.4:69543530-69543549 | MS.gene071403:intron | 50.0% | |
| CGTGCAACTTCATCAATGGG+AGG | + | chr2.4:69544217-69544236 | None:intergenic | 50.0% | |
| GCAACTTCATCAATGGGAGG+AGG | + | chr2.4:69544214-69544233 | None:intergenic | 50.0% | |
| GGCATGCATGTTAGCAATGG+GGG | - | chr2.4:69543887-69543906 | MS.gene071403:CDS | 50.0% | |
| GGCTCTTCGCATTCAGGTAT+TGG | + | chr2.4:69542728-69542747 | None:intergenic | 50.0% | |
| TAAAGCTGTGGCACAGTGCA+CGG | - | chr2.4:69543512-69543531 | MS.gene071403:intron | 50.0% | |
| TGCTAGAGCATGCATTGCTG+TGG | - | chr2.4:69544436-69544455 | MS.gene071403:intron | 50.0% | |
| TTCTTTAGTGGCACAGCAGG+AGG | - | chr2.4:69543250-69543269 | MS.gene071403:intron | 50.0% | |
| TTTACACTTGCGTGGCCCAT+AGG | - | chr2.4:69544001-69544020 | MS.gene071403:intron | 50.0% | |
| ! | AGGCAGATGTGGTGCTAAGA+GGG | - | chr2.4:69542889-69542908 | MS.gene071403:intron | 50.0% |
| ! | CAGAGTTTTCCCTGTGTCAC+AGG | - | chr2.4:69542953-69542972 | MS.gene071403:intron | 50.0% |
| ! | GTGGTGCTAAGAGGGTATAG+TGG | - | chr2.4:69542897-69542916 | MS.gene071403:intron | 50.0% |
| ! | TAGTGGGTACAACACGAGGT+GGG | - | chr2.4:69542914-69542933 | MS.gene071403:intron | 50.0% |
| !! | ATAGTGGGTACAACACGAGG+TGG | - | chr2.4:69542913-69542932 | MS.gene071403:intron | 50.0% |
| !! | GGTATAGTGGGTACAACACG+AGG | - | chr2.4:69542910-69542929 | MS.gene071403:intron | 50.0% |
| ACATGGCCCTGTGGGATTTC+AGG | - | chr2.4:69543562-69543581 | MS.gene071403:intron | 55.0% | |
| CGAAGAGCCGGATCCATAAG+TGG | - | chr2.4:69542739-69542758 | MS.gene071403:intron | 55.0% | |
| GTCCTTTCAGGAAGACCCTC+TGG | + | chr2.4:69544395-69544414 | None:intergenic | 55.0% | |
| ! | CAGGCAGATGTGGTGCTAAG+AGG | - | chr2.4:69542888-69542907 | MS.gene071403:intron | 55.0% |
| ! | GTTTTCCCTGTGTCACAGGG+CGG | - | chr2.4:69542957-69542976 | MS.gene071403:intron | 55.0% |
| ATGCACGCACATGGCCCTGT+GGG | - | chr2.4:69543554-69543573 | MS.gene071403:intron | 60.0% | |
| GGACTAGGGATGCACGCACA+TGG | - | chr2.4:69543545-69543564 | MS.gene071403:intron | 60.0% | |
| GGATCCGGCTCTTCGCATTC+AGG | + | chr2.4:69542734-69542753 | None:intergenic | 60.0% | |
| TGTCACCGCCCTGTGACACA+GGG | + | chr2.4:69542965-69542984 | None:intergenic | 60.0% | |
| !! | CAACACGAGGTGGGCACTGA+AGG | - | chr2.4:69542923-69542942 | MS.gene071403:intron | 60.0% |
| !! | GAGGTGGGCACTGAAGGTGT+TGG | - | chr2.4:69542929-69542948 | MS.gene071403:intron | 60.0% |
| CTGTCACCGCCCTGTGACAC+AGG | + | chr2.4:69542966-69542985 | None:intergenic | 65.0% | |
| GATGCACGCACATGGCCCTG+TGG | - | chr2.4:69543553-69543572 | MS.gene071403:intron | 65.0% | |
| GTGTCACAGGGCGGTGACAG+TGG | - | chr2.4:69542966-69542985 | MS.gene071403:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 69542299 | 69544537 | 69542299 | ID=MS.gene071403 |
| chr2.4 | mRNA | 69542299 | 69544537 | 69542299 | ID=MS.gene071403.t1;Parent=MS.gene071403 |
| chr2.4 | exon | 69544442 | 69544537 | 69544442 | ID=MS.gene071403.t1.exon1;Parent=MS.gene071403.t1 |
| chr2.4 | CDS | 69544442 | 69544537 | 69544442 | ID=cds.MS.gene071403.t1;Parent=MS.gene071403.t1 |
| chr2.4 | exon | 69543709 | 69543945 | 69543709 | ID=MS.gene071403.t1.exon2;Parent=MS.gene071403.t1 |
| chr2.4 | CDS | 69543709 | 69543945 | 69543709 | ID=cds.MS.gene071403.t1;Parent=MS.gene071403.t1 |
| chr2.4 | exon | 69542594 | 69542661 | 69542594 | ID=MS.gene071403.t1.exon3;Parent=MS.gene071403.t1 |
| chr2.4 | CDS | 69542594 | 69542661 | 69542594 | ID=cds.MS.gene071403.t1;Parent=MS.gene071403.t1 |
| chr2.4 | exon | 69542299 | 69542463 | 69542299 | ID=MS.gene071403.t1.exon4;Parent=MS.gene071403.t1 |
| chr2.4 | CDS | 69542299 | 69542463 | 69542299 | ID=cds.MS.gene071403.t1;Parent=MS.gene071403.t1 |
| Gene Sequence |
| Protein sequence |
