AlfalfaGEDB | MS.gene071556

M. sativa cultivar XinJiangDaYe / MS.gene071556

KEGG: -
GO: GO:0005575 GO:0016021 GO:0031224 GO:0110165
PFAM: PF00335.23

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071556.t1	XP_003606498.1	97.5	118	3	0	1	118	54	171	1.40E-58	235.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071556.t1	Q9M1E7	77.1	118	27	0	1	118	54	171	5.1e-49	194.9

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071556.t1	G7JRH3	97.5	118	3	0	1	118	54	171	1.0e-58	235.3

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04920	MS.gene071556	0.825307	5.03E-54	-1.69E-46
MS.gene049283	MS.gene071556	0.858065	1.06E-62	-1.69E-46
MS.gene049499	MS.gene071556	0.849259	3.63E-60	-1.69E-46
MS.gene051597	MS.gene071556	0.814022	1.90E-51	-1.69E-46
MS.gene051699	MS.gene071556	0.814513	1.48E-51	-1.69E-46
MS.gene051832	MS.gene071556	0.816697	4.84E-52	-1.69E-46
MS.gene052686	MS.gene071556	0.811441	6.99E-51	-1.69E-46
MS.gene053963	MS.gene071556	0.846399	2.23E-59	-1.69E-46
MS.gene054222	MS.gene071556	0.815134	1.08E-51	-1.69E-46
MS.gene054892	MS.gene071556	0.813637	2.31E-51	-1.69E-46
MS.gene054893	MS.gene071556	0.816303	5.93E-52	-1.69E-46
MS.gene054957	MS.gene071556	0.824326	8.58E-54	-1.69E-46
MS.gene055724	MS.gene071556	0.804881	1.75E-49	-1.69E-46
MS.gene057102	MS.gene071556	0.806694	7.27E-50	-1.69E-46
MS.gene057155	MS.gene071556	0.80902	2.33E-50	-1.69E-46
MS.gene058159	MS.gene071556	0.811029	8.59E-51	-1.69E-46
MS.gene058279	MS.gene071556	0.804388	2.21E-49	-1.69E-46
MS.gene058592	MS.gene071556	0.812435	4.25E-51	-1.69E-46
MS.gene05878	MS.gene071556	0.820551	6.46E-53	-1.69E-46
MS.gene05952	MS.gene071556	0.856686	2.72E-62	-1.69E-46
MS.gene05985	MS.gene071556	-0.818337	2.07E-52	-1.69E-46
MS.gene060012	MS.gene071556	0.829957	3.85E-55	-1.69E-46
MS.gene06018	MS.gene071556	0.815155	1.07E-51	-1.69E-46
MS.gene060933	MS.gene071556	0.817701	2.88E-52	-1.69E-46
MS.gene060937	MS.gene071556	0.824032	1.01E-53	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071556.t1	MTR_4g061010	97.458	118	3	0	1	118	54	171	3.73e-81	239
MS.gene071556.t1	MTR_6g033335	46.610	118	57	1	1	118	53	164	2.57e-31	112
MS.gene071556.t1	MTR_4g129670	47.458	118	60	1	1	118	53	168	3.35e-31	111
MS.gene071556.t1	MTR_1g095530	44.068	118	60	1	1	118	53	164	6.24e-23	90.5
MS.gene071556.t1	MTR_8g066790	39.474	114	65	1	5	118	57	166	7.92e-21	84.7
MS.gene071556.t1	MTR_8g097280	29.915	117	78	1	2	118	55	167	4.29e-18	77.8
MS.gene071556.t1	MTR_4g112570	36.735	98	62	0	1	98	56	153	3.11e-17	75.1
MS.gene071556.t1	MTR_8g101600	39.316	117	67	1	2	118	54	166	3.34e-16	72.4
MS.gene071556.t1	MTR_5g030070	40.367	109	61	1	10	118	62	166	3.31e-15	69.7
MS.gene071556.t1	MTR_2g056130	35.484	93	60	0	2	94	54	146	1.25e-13	65.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071556.t1	AT3G45600	77.119	118	27	0	1	118	54	171	2.06e-66	199
MS.gene071556.t1	AT3G45600	77.119	118	27	0	1	118	54	171	3.81e-65	199
MS.gene071556.t1	AT5G60220	65.217	115	40	0	4	118	57	171	1.04e-49	160
MS.gene071556.t1	AT2G23810	44.915	118	63	1	1	118	54	169	7.42e-30	108
MS.gene071556.t1	AT3G12090	44.915	118	59	2	1	118	53	164	8.88e-26	97.8
MS.gene071556.t1	AT4G30430	45.263	95	52	0	1	95	54	148	2.93e-24	93.6
MS.gene071556.t1	AT4G28050	38.983	118	70	1	1	118	54	169	1.89e-23	91.3
MS.gene071556.t1	AT5G46700	41.379	116	58	3	6	118	58	166	3.74e-21	85.5
MS.gene071556.t1	AT1G63260	32.479	117	75	1	2	118	55	167	2.95e-20	82.0
MS.gene071556.t1	AT1G63260	32.479	117	75	1	2	118	55	167	4.74e-20	81.6
MS.gene071556.t1	AT1G63260	32.479	117	75	1	2	118	55	167	9.74e-20	82.0
MS.gene071556.t1	AT1G63260	32.479	117	75	1	2	118	55	167	9.74e-20	82.0
MS.gene071556.t1	AT1G63260	32.479	117	75	1	2	118	55	167	1.13e-19	81.3
MS.gene071556.t1	AT1G63260	32.479	117	75	1	2	118	55	167	1.15e-19	81.6
MS.gene071556.t1	AT1G18520	37.607	117	70	2	2	118	56	169	3.52e-19	80.5
MS.gene071556.t1	AT2G19580	40.517	116	64	2	4	118	56	167	8.16e-17	73.9
MS.gene071556.t1	AT4G23410	34.783	115	69	1	4	118	56	164	1.74e-16	73.2

Find 0 sgRNAs with CRISPR-Local

Find 32 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	AATATTTGCTTATGTTGTGA+CGG	+	33285:8566-8585	MS.gene071556:CDS	25.0%
!	GTATTTGGATTATTATTTGC+AGG	+	33285:8623-8642	MS.gene071556:CDS	25.0%
!	TATTATTTGCAGGATTATTC+TGG	+	33285:8633-8652	MS.gene071556:CDS	25.0%
!!	GAAGATTAGTTCTTGTATAA+GGG	+	33285:8695-8714	MS.gene071556:CDS	25.0%
!	GGAAGATTAGTTCTTGTATA+AGG	+	33285:8694-8713	MS.gene071556:CDS	30.0%
!!	AACGTAACAAGAAAGTGTTA+CGG	-	33285:8497-8516	MS.gene071556:intergenic	30.0%
	ATTTGCAGGATTATTCTGGT+TGG	+	33285:8637-8656	MS.gene071556:CDS	35.0%
	GAAGAAGGGTTATGAATAGA+GGG	+	33285:8601-8620	MS.gene071556:CDS	35.0%
	GTTGTCATGTTCTTAGTCAT+TGG	+	33285:8525-8544	MS.gene071556:CDS	35.0%
	TGACTAAGAACATGACAACA+AGG	-	33285:8524-8543	MS.gene071556:intergenic	35.0%
	TTAGTCATTGGTGTGCTTAT+TGG	+	33285:8537-8556	MS.gene071556:CDS	35.0%
!!	CTTATGTTGTGACGGATAAA+GGG	+	33285:8574-8593	MS.gene071556:CDS	35.0%
!!	GGTTATGAATAGAGGGTATT+TGG	+	33285:8608-8627	MS.gene071556:CDS	35.0%
!!	TAAGGGATTCTAAAGCTTGT+AGG	+	33285:8712-8731	MS.gene071556:CDS	35.0%
!!	TTCTAAAGCTTGTAGGAAGT+TGG	+	33285:8719-8738	MS.gene071556:CDS	35.0%
	AAGAACATATCAGCAGTCTC+AGG	-	33285:8765-8784	MS.gene071555:intergenic	40.0%
	AGTGGCTAGTGATGAGTATT+GGG	+	33285:8671-8690	MS.gene071556:CDS	40.0%
	GGAAGAAGGGTTATGAATAG+AGG	+	33285:8600-8619	MS.gene071556:CDS	40.0%
!!	GCTTATGTTGTGACGGATAA+AGG	+	33285:8573-8592	MS.gene071556:CDS	40.0%
!!	TTTCATTAGCCGGTTTTGCA+GGG	+	33285:8463-8482	MS.gene071556:CDS	40.0%
	AAGCTTGTAGGAAGTTGGCT+AGG	+	33285:8724-8743	MS.gene071556:CDS	45.0%
	GAGTGGCTAGTGATGAGTAT+TGG	+	33285:8670-8689	MS.gene071556:CDS	45.0%
	GGATAAAGGGTCTGGAAGAA+GGG	+	33285:8587-8606	MS.gene071556:CDS	45.0%
!	GCAGGATTATTCTGGTTGGT+TGG	+	33285:8641-8660	MS.gene071556:CDS	45.0%
!	GTGGCTAGTGATGAGTATTG+GGG	+	33285:8672-8691	MS.gene071556:CDS	45.0%
!!	GTTTCATTAGCCGGTTTTGC+AGG	+	33285:8462-8481	MS.gene071556:CDS	45.0%
!!	TGGCTAGTGATGAGTATTGG+GGG	+	33285:8673-8692	MS.gene071556:CDS	45.0%
!!	TTCATTAGCCGGTTTTGCAG+GGG	+	33285:8464-8483	MS.gene071556:CDS	45.0%
	CGGATAAAGGGTCTGGAAGA+AGG	+	33285:8586-8605	MS.gene071556:CDS	50.0%
!	TGGTTGGTTGGAAGAGAGAG+TGG	+	33285:8653-8672	MS.gene071556:CDS	50.0%
!!	GTTGTGACGGATAAAGGGTC+TGG	+	33285:8579-8598	MS.gene071556:CDS	50.0%
	GTAACACGCCCCTGCAAAAC+CGG	-	33285:8475-8494	MS.gene071556:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
33285	gene	8456	8809	8456	ID=MS.gene071556
33285	mRNA	8456	8809	8456	ID=MS.gene071556.t1;Parent=MS.gene071556
33285	exon	8456	8809	8456	ID=MS.gene071556.t1.exon1;Parent=MS.gene071556.t1
33285	CDS	8456	8809	8456	ID=cds.MS.gene071556.t1;Parent=MS.gene071556.t1

Gene Sequence	>MS.gene071556 ATGGTTGTTTCATTAGCCGGTTTTGCAGGGGCGTGTTACCGTAACACTTTCTTGTTACGTTTCTACCTTGTTGTCATGTTCTTAGTCATTGGTGTGCTTATTGGATTTATAATATTTGCTTATGTTGTGACGGATAAAGGGTCTGGAAGAAGGGTTATGAATAGAGGGTATTTGGATTATTATTTGCAGGATTATTCTGGTTGGTTGGAAGAGAGAGTGGCTAGTGATGAGTATTGGGGGAAGATTAGTTCTTGTATAAGGGATTCTAAAGCTTGTAGGAAGTTGGCTAGGAATTTTAATGATGTTCCTGAGACTGCTGATATGTTCTTTCAAAGAAAACTCAATCCTATTCAG
Protein sequence	>MS.gene071556.t1 MVVSLAGFAGACYRNTFLLRFYLVVMFLVIGVLIGFIIFAYVVTDKGSGRRVMNRGYLDYYLQDYSGWLEERVASDEYWGKISSCIRDSKACRKLARNFNDVPETADMFFQRKLNPIQ