AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06018


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06018.t1 MTR_8g098980 99.688 321 1 0 1 321 1 321 0.0 662
MS.gene06018.t1 MTR_1g079950 79.114 316 64 2 1 315 1 315 0.0 541
MS.gene06018.t1 MTR_1g079950 79.114 316 64 2 1 315 30 344 0.0 541
MS.gene06018.t1 MTR_1g079950 79.114 316 64 2 1 315 1 315 0.0 540
MS.gene06018.t1 MTR_1g079950 79.114 316 64 2 1 315 1 315 0.0 540
MS.gene06018.t1 MTR_7g116380 78.165 316 67 2 1 315 1 315 0.0 533
MS.gene06018.t1 MTR_7g116380 78.165 316 67 2 1 315 1 315 0.0 533
MS.gene06018.t1 MTR_5g081230 78.431 306 66 0 1 306 17 322 0.0 523
MS.gene06018.t1 MTR_1g074880 74.603 315 78 2 1 314 1 314 0.0 511
MS.gene06018.t1 MTR_1g074880 74.603 315 78 2 1 314 1 314 0.0 510
MS.gene06018.t1 MTR_1g043240 75.161 310 75 2 1 309 1 309 2.79e-180 501
MS.gene06018.t1 MTR_7g112870 72.500 320 79 3 1 318 5 317 1.14e-176 491
MS.gene06018.t1 MTR_8g005010 77.163 289 65 1 6 294 4 291 6.35e-174 484
MS.gene06018.t1 MTR_1g079950 82.422 256 44 1 61 315 34 289 1.11e-165 464
MS.gene06018.t1 MTR_1g074880 78.516 256 54 1 60 314 4 259 9.42e-158 442
MS.gene06018.t1 MTR_1g074880 78.516 256 54 1 60 314 4 259 1.03e-157 441
MS.gene06018.t1 MTR_8g085610 46.128 297 150 3 6 301 9 296 2.93e-96 287
MS.gene06018.t1 MTR_7g107310 47.826 276 142 2 27 301 27 301 1.97e-95 285
MS.gene06018.t1 MTR_8g085610 47.970 271 139 2 32 301 3 272 3.09e-94 281
MS.gene06018.t1 MTR_5g037200 48.679 265 134 2 27 290 20 283 1.56e-93 280
MS.gene06018.t1 MTR_8g062430 48.302 265 135 2 27 290 20 283 1.82e-93 280
MS.gene06018.t1 MTR_5g093990 44.948 287 154 2 27 312 17 300 5.77e-93 279
MS.gene06018.t1 MTR_1g039380 41.158 311 168 6 6 314 3 300 5.89e-90 271
MS.gene06018.t1 MTR_1g039380 41.935 279 155 4 38 314 3 276 2.18e-86 261
MS.gene06018.t1 MTR_2g087530 50.000 272 122 5 23 280 660 931 9.60e-82 267
MS.gene06018.t1 MTR_1g089370 46.875 288 135 7 9 279 528 814 1.08e-80 262
MS.gene06018.t1 MTR_2g087530 45.603 307 151 6 3 293 525 831 1.82e-80 261
MS.gene06018.t1 MTR_4g050540 45.603 307 151 6 3 293 643 949 4.27e-80 262
MS.gene06018.t1 MTR_3g452710 42.160 287 155 5 3 283 168 449 3.35e-70 226
MS.gene06018.t1 MTR_3g452710 42.160 287 155 5 3 283 235 516 1.52e-69 226
MS.gene06018.t1 MTR_2g100130 38.871 319 178 8 3 310 86 398 4.49e-68 218
MS.gene06018.t1 MTR_2g100130 40.972 288 158 6 3 283 156 438 6.27e-67 217
MS.gene06018.t1 MTR_2g100130 41.404 285 155 6 3 280 195 474 6.42e-67 218
MS.gene06018.t1 MTR_2g100130 41.404 285 155 6 3 280 185 464 9.37e-67 218
MS.gene06018.t1 MTR_2g100130 41.404 285 155 6 3 280 195 474 1.33e-66 218
MS.gene06018.t1 MTR_2g100130 40.972 288 157 7 3 283 156 437 2.53e-65 213
MS.gene06018.t1 MTR_2g100130 41.404 285 154 7 3 280 195 473 2.60e-65 214
MS.gene06018.t1 MTR_2g100130 41.818 275 148 6 3 270 195 464 4.02e-65 213
MS.gene06018.t1 MTR_2g100160 38.438 320 180 9 2 310 104 417 6.17e-61 200
MS.gene06018.t1 MTR_5g037200 50.898 167 81 1 27 192 20 186 1.12e-59 191
MS.gene06018.t1 MTR_8g072600 31.111 315 152 10 34 283 100 414 8.18e-36 134
MS.gene06018.t1 MTR_8g072600 30.677 251 130 7 34 240 100 350 9.76e-29 113
MS.gene06018.t1 MTR_2g099710 28.931 318 171 14 32 305 211 517 1.28e-21 95.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06018.t1 AT1G64040 85.266 319 47 0 1 319 1 319 0.0 589
MS.gene06018.t1 AT4G11240 83.438 320 53 0 1 320 1 320 0.0 585
MS.gene06018.t1 AT2G29400 81.457 302 53 2 1 300 15 315 0.0 526
MS.gene06018.t1 AT2G39840 79.070 301 63 0 1 301 14 314 0.0 516
MS.gene06018.t1 AT5G59160 78.146 302 65 1 1 301 9 310 0.0 509
MS.gene06018.t1 AT5G59160 78.146 302 65 1 1 301 9 310 0.0 509
MS.gene06018.t1 AT5G59160 78.146 302 65 1 1 301 9 310 0.0 509
MS.gene06018.t1 AT3G46820 77.152 302 68 1 1 301 9 310 0.0 503
MS.gene06018.t1 AT5G43380 70.717 321 93 1 1 321 1 320 9.94e-176 489
MS.gene06018.t1 AT5G43380 71.519 316 89 1 1 316 1 315 3.90e-175 488
MS.gene06018.t1 AT5G43380 70.717 321 93 1 1 321 1 320 5.29e-175 488
MS.gene06018.t1 AT5G27840 75.338 296 70 1 1 296 9 301 6.25e-174 484
MS.gene06018.t1 AT5G27840 73.786 309 73 2 1 304 9 314 7.09e-174 485
MS.gene06018.t1 AT5G27840 75.338 296 70 1 1 296 9 301 1.37e-173 484
MS.gene06018.t1 AT5G27840 75.338 296 70 1 1 296 9 301 1.37e-173 484
MS.gene06018.t1 AT3G05580 76.014 296 68 1 1 296 9 301 3.53e-173 483
MS.gene06018.t1 AT3G05580 75.304 247 58 1 1 247 9 252 8.00e-141 398
MS.gene06018.t1 AT2G42500 47.138 297 147 3 6 301 14 301 5.12e-98 292
MS.gene06018.t1 AT3G58500 46.465 297 149 3 6 301 14 301 1.00e-96 288
MS.gene06018.t1 AT5G55260 46.739 276 146 1 27 301 17 292 7.29e-95 283
MS.gene06018.t1 AT1G10430 46.503 286 143 3 6 290 7 283 1.70e-94 283
MS.gene06018.t1 AT1G10430 46.503 286 143 3 6 290 7 283 1.70e-94 283
MS.gene06018.t1 AT1G59830 46.853 286 142 3 6 290 7 283 4.39e-94 281
MS.gene06018.t1 AT1G69960 47.547 265 137 2 27 290 21 284 4.13e-93 279
MS.gene06018.t1 AT4G26720 43.310 284 160 1 19 301 9 292 2.02e-92 277
MS.gene06018.t1 AT1G50370 40.453 309 172 5 8 314 2 300 3.47e-90 271
MS.gene06018.t1 AT3G19980 40.453 309 172 5 8 314 2 300 5.48e-90 271
MS.gene06018.t1 AT5G55260 40.694 317 146 2 27 301 17 333 1.67e-86 264
MS.gene06018.t1 AT1G59830 48.400 250 119 3 6 254 7 247 1.88e-83 253
MS.gene06018.t1 AT2G27210 50.000 272 122 5 23 280 666 937 1.76e-82 269
MS.gene06018.t1 AT2G27210 50.000 272 122 5 23 280 671 942 1.86e-82 269
MS.gene06018.t1 AT1G08420 49.632 272 123 5 23 280 677 948 1.35e-81 266
MS.gene06018.t1 AT1G08420 49.632 272 123 5 23 280 682 953 1.42e-81 266
MS.gene06018.t1 AT4G03080 45.364 302 147 7 9 293 530 830 1.15e-80 262
MS.gene06018.t1 AT2G42500 49.327 223 111 2 80 301 33 254 1.55e-76 235
MS.gene06018.t1 AT1G03445 42.857 301 149 8 3 282 446 744 8.40e-73 239
MS.gene06018.t1 AT1G03445 42.857 301 149 8 3 282 446 744 8.94e-73 239
MS.gene06018.t1 AT2G42810 40.702 285 157 5 2 280 170 448 8.75e-67 217
MS.gene06018.t1 AT2G42810 40.702 285 157 5 2 280 170 448 8.75e-67 217
MS.gene06018.t1 AT2G42810 40.702 285 157 5 2 280 170 448 8.75e-67 217
MS.gene06018.t1 AT2G42810 40.702 285 157 5 2 280 224 502 2.40e-66 217
MS.gene06018.t1 AT2G42810 40.702 285 157 5 2 280 223 501 2.53e-66 217
MS.gene06018.t1 AT2G42500 45.238 168 80 3 6 169 14 173 1.80e-44 150
MS.gene06018.t1 AT2G42500 44.571 175 83 4 6 176 14 178 2.55e-44 150
MS.gene06018.t1 AT2G42500 46.250 160 74 3 6 161 14 165 1.05e-43 148
MS.gene06018.t1 AT5G63870 30.303 264 134 7 56 269 79 342 5.08e-31 121
MS.gene06018.t1 AT5G63870 30.303 264 134 7 56 269 79 342 5.08e-31 121
MS.gene06018.t1 AT5G63870 30.000 220 119 5 56 240 79 298 2.25e-25 103
MS.gene06018.t1 AT1G48120 28.477 302 144 8 34 269 630 925 5.70e-25 106
MS.gene06018.t1 AT5G10900 29.885 261 143 10 56 278 225 483 1.12e-20 93.2
MS.gene06018.t1 AT5G10900 29.885 261 143 10 56 278 225 483 1.36e-20 92.8
MS.gene06018.t1 AT5G10900 29.885 261 143 10 56 278 225 483 1.43e-20 92.8

Find 71 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTCCATCAATCGTATTTA+TGG 0.118761 4.1:+5209062 MS.gene06018:CDS
GAAGCAAATTACTTATTTCT+TGG 0.231778 4.1:+5208930 MS.gene06018:CDS
TCAAACTCACCACAGTAATT+TGG 0.239332 4.1:-5210026 None:intergenic
ACCTTATGAGGTGGAGTTCC+AGG 0.245870 4.1:-5210158 None:intergenic
CGAGGTGTTTCATTTACATT+TGG 0.254753 4.1:+5209341 MS.gene06018:CDS
TATCGGAAGACTTCAGTATC+TGG 0.265509 4.1:-5210097 None:intergenic
TCCAACTTTGCCCTTCTTAT+CGG 0.312310 4.1:-5210114 None:intergenic
CCATGATCTGGCACATCAAT+AGG 0.319380 4.1:-5209254 None:intergenic
AGAAATAAGTAATTTGCTTC+AGG 0.320791 4.1:-5208927 None:intergenic
GAGGTGTTTCATTTACATTT+GGG 0.340319 4.1:+5209342 MS.gene06018:CDS
TGATTGCTTTAATTGTTTAC+CGG 0.357293 4.1:+5209139 MS.gene06018:CDS
GCTTCAAGTTCAAGAAGATT+AGG 0.359782 4.1:-5207672 None:intergenic
AAGAAGGGCAAAGTTGGATT+TGG 0.364950 4.1:+5210119 MS.gene06018:CDS
CGTATTCGAACAGCCTTAAA+AGG 0.372745 4.1:-5208893 None:intergenic
AGGAGAACTTCTTTCTTCTC+AGG 0.373373 4.1:+5209024 MS.gene06018:CDS
GCCTTCTCTGCGACCTTCTG+TGG 0.394394 4.1:+5209276 MS.gene06018:CDS
GCCTTAAAAGGTCTGAAAAC+TGG 0.396799 4.1:-5208881 None:intergenic
CATCCCTCAAGATCTTTATC+AGG 0.398758 4.1:-5209305 None:intergenic
GATTGATGGAGGCGCATTCA+TGG 0.439246 4.1:-5209052 None:intergenic
GAAACCATAAATACGATTGA+TGG 0.442568 4.1:-5209066 None:intergenic
TACAGTCACCAGCTTACGTT+TGG 0.445882 4.1:-5209994 None:intergenic
ACCTGGAACTCCACCTCATA+AGG 0.452558 4.1:+5210157 MS.gene06018:CDS
CATGATCTGGCACATCAATA+GGG 0.454758 4.1:-5209253 None:intergenic
GAAGCTCCTATCAAAATTTG+TGG 0.455039 4.1:+5207690 MS.gene06018:CDS
CCTATTGATGTGCCAGATCA+TGG 0.458791 4.1:+5209254 MS.gene06018:CDS
GGAGGTATAATGTTCGTCTC+TGG 0.469205 4.1:+5209105 MS.gene06018:CDS
CCCACAGAAGGTCGCAGAGA+AGG 0.474160 4.1:-5209277 None:intergenic
ACTGAAGTCTTCCGATAAGA+AGG 0.476810 4.1:+5210103 MS.gene06018:CDS
AGAAGATCCTTTGCATGCAT+GGG 0.477596 4.1:+5209180 MS.gene06018:CDS
TCGCAGAGAAGGCCATGATC+TGG 0.483085 4.1:-5209266 None:intergenic
TCCGATAAGAAGGGCAAAGT+TGG 0.484368 4.1:+5210113 MS.gene06018:CDS
GGAGAACTTCTTTCTTCTCA+GGG 0.491751 4.1:+5209025 MS.gene06018:CDS
AATAAGTAATTTGCTTCAGG+TGG 0.494184 4.1:-5208924 None:intergenic
TGATAAAGATCTTGAGGGAT+GGG 0.495424 4.1:+5209307 MS.gene06018:CDS
GCGTCTCAGGTTGTAGAAGA+TGG 0.496210 4.1:+5209957 MS.gene06018:intron
GAGAAGATCCTTTGCATGCA+TGG 0.497979 4.1:+5209179 MS.gene06018:CDS
TCAGCTTTGTACTTCTGCTA+AGG 0.513143 4.1:+5207632 MS.gene06018:CDS
TCTCTTGGAGATGGATGATA+CGG 0.513600 4.1:+5207524 None:intergenic
CCTTCTCTGCGACCTTCTGT+GGG 0.527902 4.1:+5209277 MS.gene06018:CDS
TTTAAGGCTGTTCGAATACG+GGG 0.546220 4.1:+5208896 MS.gene06018:CDS
TGATCCTGATAAAGATCTTG+AGG 0.546600 4.1:+5209301 MS.gene06018:CDS
ATTTACATTTGGGGCTGACA+AGG 0.548915 4.1:+5209352 MS.gene06018:CDS
AAAGGTCTGAAAACTGGCCA+TGG 0.549539 4.1:-5208875 None:intergenic
TCTGATATGTAGAGCTCACC+AGG 0.551295 4.1:+5209406 MS.gene06018:CDS
CTGATAAAGATCTTGAGGGA+TGG 0.553149 4.1:+5209306 MS.gene06018:CDS
AGGTGTTTCATTTACATTTG+GGG 0.560742 4.1:+5209343 MS.gene06018:CDS
TTGTTTGCAGGAGATGTCCA+TGG 0.568088 4.1:+5208858 MS.gene06018:intron
TCGTCTACTAGAGCAGCAAC+CGG 0.568940 4.1:-5209158 None:intergenic
TGCATATAAAATCAAATACA+AGG 0.570871 4.1:+5209004 MS.gene06018:CDS
TGTGGTGAGTTTGATAATGC+CGG 0.578788 4.1:+5210035 MS.gene06018:CDS
GATCCTGATAAAGATCTTGA+GGG 0.581991 4.1:+5209302 MS.gene06018:CDS
CTTGGAGATTATGTTGATCG+TGG 0.584311 4.1:+5208948 MS.gene06018:CDS
ATCCACACTCATCATAGCAC+CGG 0.591401 4.1:-5210054 None:intergenic
GGCAATAACTCATCAAGACC+TGG 0.595098 4.1:+5210140 MS.gene06018:CDS
GAAGATCCTTTGCATGCATG+GGG 0.598475 4.1:+5209181 MS.gene06018:CDS
TATCAGGATCAGCCCACAGA+AGG 0.599205 4.1:-5209289 None:intergenic
CTGAAGTCTTCCGATAAGAA+GGG 0.604771 4.1:+5210104 MS.gene06018:CDS
GATAAAGATCTTGAGGGATG+GGG 0.613478 4.1:+5209308 MS.gene06018:CDS
ATAAGTAATTTGCTTCAGGT+GGG 0.616465 4.1:-5208923 None:intergenic
GGATGGGGAGAAAATGATCG+AGG 0.631648 4.1:+5209323 MS.gene06018:CDS
AAGCTTGTATCAGCGAAGAA+CGG 0.636419 4.1:+5207567 MS.gene06018:CDS
GTTTCTACGATGAGTGCAAG+AGG 0.643121 4.1:+5209084 MS.gene06018:CDS
AAGCTGACGAATATCAGCCT+CGG 0.647938 4.1:-5207616 None:intergenic
ACCATAAATACGATTGATGG+AGG 0.650130 4.1:-5209063 None:intergenic
GAGAACTTCTTTCTTCTCAG+GGG 0.674269 4.1:+5209026 MS.gene06018:CDS
TGCCGGTGCTATGATGAGTG+TGG 0.686901 4.1:+5210052 MS.gene06018:CDS
TTAAGGCTGTTCGAATACGG+GGG 0.692495 4.1:+5208897 MS.gene06018:CDS
TCTACGATGAGTGCAAGAGG+AGG 0.698302 4.1:+5209087 MS.gene06018:CDS
TTCTCTGCACCAAATTACTG+TGG 0.705308 4.1:+5210017 MS.gene06018:CDS
AAGATCCTTTGCATGCATGG+GGG 0.732102 4.1:+5209182 MS.gene06018:CDS
GAAGCAAGTTCATCTTACCG+AGG 0.743441 4.1:+5207599 MS.gene06018:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTTAATTTTTAATT+GGG + chr4.1:5207854-5207873 MS.gene06018:intron 0.0%
!!! TTTTAATTTTAATTTTTAAT+TGG + chr4.1:5207853-5207872 MS.gene06018:intron 0.0%
!! ACAAGTTTAAAAACTATTAA+TGG + chr4.1:5210831-5210850 MS.gene06018:intron 15.0%
!! TAGAATTTATGTAATTGAAT+TGG + chr4.1:5207808-5207827 MS.gene06018:intron 15.0%
!! TATATAAATCTACACAAAAT+CGG - chr4.1:5210606-5210625 None:intergenic 15.0%
!! TATTTATAATGATAATTGAG+CGG + chr4.1:5209597-5209616 MS.gene06018:intron 15.0%
!!! AACTCATAGATTTTAATTTT+AGG + chr4.1:5208463-5208482 MS.gene06018:intron 15.0%
!!! ACTCATAGATTTTAATTTTA+GGG + chr4.1:5208464-5208483 MS.gene06018:intron 15.0%
!!! ATGTTTCCTTTTAATATTTT+GGG + chr4.1:5209930-5209949 MS.gene06018:intron 15.0%
!!! CATTCATATTTTTAACAAAA+TGG - chr4.1:5208679-5208698 None:intergenic 15.0%
!! AAACTTATTGTATATACAGA+CGG - chr4.1:5209516-5209535 None:intergenic 20.0%
!! ATAAATCTATACACAAAATC+AGG - chr4.1:5210390-5210409 None:intergenic 20.0%
!! CTATTTATAAATTATAGCCA+AGG - chr4.1:5209491-5209510 None:intergenic 20.0%
!! TGCATATAAAATCAAATACA+AGG + chr4.1:5209004-5209023 MS.gene06018:CDS 20.0%
!!! CATTATATTTTTACCTTATG+AGG - chr4.1:5210173-5210192 None:intergenic 20.0%
!!! GATGTTTCCTTTTAATATTT+TGG + chr4.1:5209929-5209948 MS.gene06018:intron 20.0%
!!! TCATACACTTTTTTAATGAA+TGG + chr4.1:5207975-5207994 MS.gene06018:intron 20.0%
!!! TGTATTTGATTTTATATGCA+AGG - chr4.1:5209004-5209023 None:intergenic 20.0%
!!! TGTTTCCTTTTAATATTTTG+GGG + chr4.1:5209931-5209950 MS.gene06018:intron 20.0%
!!! TTTTAATTTTTAATTGGGGT+CGG + chr4.1:5207859-5207878 MS.gene06018:intron 20.0%
!!! TTTTTAAACTTGTCTTAACT+TGG - chr4.1:5210824-5210843 None:intergenic 20.0%
! AAAAAAAAAAAGCTTCCTGT+GGG + chr4.1:5211007-5211026 MS.gene06018:intron 25.0%
! AAAAAGAGGTAGTTAAACAA+AGG - chr4.1:5209786-5209805 None:intergenic 25.0%
! ACATAAATCTACACAAAATC+AGG - chr4.1:5210712-5210731 None:intergenic 25.0%
! GATTCTATGTATATGTGTAT+GGG + chr4.1:5210229-5210248 MS.gene06018:intron 25.0%
! TAACAAAATGGAAAAGCTTT+AGG - chr4.1:5208667-5208686 None:intergenic 25.0%
! TATGAAACTTCTGAATTCTT+TGG - chr4.1:5210513-5210532 None:intergenic 25.0%
! TGATTCTATGTATATGTGTA+TGG + chr4.1:5210228-5210247 MS.gene06018:intron 25.0%
! TGATTGCTTTAATTGTTTAC+CGG + chr4.1:5209139-5209158 MS.gene06018:CDS 25.0%
! TTAAAAACTTGGATCAGATA+CGG + chr4.1:5209219-5209238 MS.gene06018:CDS 25.0%
! TTATAAATTATAGCCAAGGA+TGG - chr4.1:5209487-5209506 None:intergenic 25.0%
! TTATGTAATTGAATTGGTAG+TGG + chr4.1:5207814-5207833 MS.gene06018:intron 25.0%
! TTGTGATATTTAATGAGTTC+TGG + chr4.1:5211183-5211202 MS.gene06018:intron 25.0%
!! GAAGCAAATTACTTATTTCT+TGG + chr4.1:5208930-5208949 MS.gene06018:CDS 25.0%
!! TTGGGTTTATCTCAAATTTT+TGG + chr4.1:5208361-5208380 MS.gene06018:intron 25.0%
!!! AAGATACCACAAATTTTGAT+AGG - chr4.1:5207699-5207718 None:intergenic 25.0%
!!! ACAGGAAGCTTTTTTTTTTT+GGG - chr4.1:5211007-5211026 None:intergenic 25.0%
!!! AGAAATAAGTAATTTGCTTC+AGG - chr4.1:5208930-5208949 None:intergenic 25.0%
!!! GTTTCCTTTTAATATTTTGG+GGG + chr4.1:5209932-5209951 MS.gene06018:intron 25.0%
!!! TATATTTTTACCTTATGAGG+TGG - chr4.1:5210170-5210189 None:intergenic 25.0%
!!! TTGAGTTGAATTTGTTTTTG+TGG + chr4.1:5208039-5208058 MS.gene06018:intron 25.0%
!!! TTGGACACTTTAATTTTGAT+GGG - chr4.1:5210861-5210880 None:intergenic 25.0%
!!! TTGTTTTTGTGGTTTTTGAT+AGG + chr4.1:5208050-5208069 MS.gene06018:intron 25.0%
!!! TTTAATTTTTAATTGGGGTC+GGG + chr4.1:5207860-5207879 MS.gene06018:intron 25.0%
!!! TTTGGACACTTTAATTTTGA+TGG - chr4.1:5210862-5210881 None:intergenic 25.0%
AAAAAGAGATTCAACGTTCA+CGG + chr4.1:5210879-5210898 MS.gene06018:intron 30.0%
AAAATGGTGAATTGTGTCTA+TGG - chr4.1:5210912-5210931 None:intergenic 30.0%
AAACATCAGATCAGATTTAC+TGG - chr4.1:5209916-5209935 None:intergenic 30.0%
AGGTGTTTCATTTACATTTG+GGG + chr4.1:5209343-5209362 MS.gene06018:CDS 30.0%
AGTAAAGGATATGACAAAGT+TGG + chr4.1:5209653-5209672 MS.gene06018:intron 30.0%
ATTCTATGTATATGTGCATG+GGG + chr4.1:5210440-5210459 MS.gene06018:intron 30.0%
ATTGAAATTAACCAAGCTAC+AGG - chr4.1:5209440-5209459 None:intergenic 30.0%
CAAAAAAAAAAAGCTTCCTG+TGG + chr4.1:5211006-5211025 MS.gene06018:intron 30.0%
CATGTTATCAACTTATCATC+AGG + chr4.1:5208633-5208652 MS.gene06018:intron 30.0%
GAAACCATAAATACGATTGA+TGG - chr4.1:5209069-5209088 None:intergenic 30.0%
GATTCTATGTATATGTGCAT+GGG + chr4.1:5210439-5210458 MS.gene06018:intron 30.0%
GTAAAGGATATGACAAAGTT+GGG + chr4.1:5209654-5209673 MS.gene06018:intron 30.0%
TGATTCTATGTATATGTGCA+TGG + chr4.1:5210438-5210457 MS.gene06018:intron 30.0%
TTATATATTTGTCTGTGTGC+TGG + chr4.1:5209842-5209861 MS.gene06018:intron 30.0%
TTATTTGTGTTTCCTCATTG+CGG + chr4.1:5208144-5208163 MS.gene06018:intron 30.0%
TTCTCCTGAACTTAAAAACT+TGG + chr4.1:5209208-5209227 MS.gene06018:CDS 30.0%
TTGAAATTAACCAAGCTACA+GGG - chr4.1:5209439-5209458 None:intergenic 30.0%
! AAGTTTCATGTCACTTAAGT+TGG + chr4.1:5210342-5210361 MS.gene06018:intron 30.0%
! GAGGTGTTTCATTTACATTT+GGG + chr4.1:5209342-5209361 MS.gene06018:CDS 30.0%
! GGTTTAAACAATTTGTTTGC+AGG + chr4.1:5208846-5208865 MS.gene06018:intron 30.0%
! GTTTTCTTCAGACAATTAAG+TGG + chr4.1:5208081-5208100 MS.gene06018:intron 30.0%
! TGGTTTTTGATAGGATTGTT+TGG + chr4.1:5208059-5208078 MS.gene06018:intron 30.0%
! TTTTGCACATACTATGGTTT+TGG + chr4.1:5208570-5208589 MS.gene06018:intron 30.0%
!! AATAAGTAATTTGCTTCAGG+TGG - chr4.1:5208927-5208946 None:intergenic 30.0%
!! ATAAGTAATTTGCTTCAGGT+GGG - chr4.1:5208926-5208945 None:intergenic 30.0%
!! ATTGCTTTAGAGAAACATCT+TGG + chr4.1:5210779-5210798 MS.gene06018:intron 30.0%
!! TTGCTTTAGAGAAACATCTT+GGG + chr4.1:5210780-5210799 MS.gene06018:intron 30.0%
!!! AAGCTTTTTTTTTTTGGGTG+GGG - chr4.1:5211002-5211021 None:intergenic 30.0%
!!! CACAGGAAGCTTTTTTTTTT+TGG - chr4.1:5211008-5211027 None:intergenic 30.0%
!!! CACTTTTTTAATGAATGGCT+AGG + chr4.1:5207980-5207999 MS.gene06018:intron 30.0%
!!! GAAGCTTTTTTTTTTTGGGT+GGG - chr4.1:5211003-5211022 None:intergenic 30.0%
!!! TGATCCAAGTTTTTAAGTTC+AGG - chr4.1:5209215-5209234 None:intergenic 30.0%
!!! TTTAGCTTTTGCACATACTA+TGG + chr4.1:5208564-5208583 MS.gene06018:intron 30.0%
!!! TTTTAATTTTAGGGATGCAG+TGG + chr4.1:5208473-5208492 MS.gene06018:intron 30.0%
AAAAGAGATTCAACGTTCAC+GGG + chr4.1:5210880-5210899 MS.gene06018:intron 35.0%
AAAAGCAAAATAGGACCTGA+AGG - chr4.1:5208798-5208817 None:intergenic 35.0%
ACACACAACATAATGAGACA+AGG - chr4.1:5208768-5208787 None:intergenic 35.0%
ACAGTGGTCAAAAGCAAAAT+AGG - chr4.1:5208807-5208826 None:intergenic 35.0%
ACCATAAATACGATTGATGG+AGG - chr4.1:5209066-5209085 None:intergenic 35.0%
ACTAAACTGATTGACAACCA+AGG - chr4.1:5208244-5208263 None:intergenic 35.0%
AGAAGTTTCACAACTTCTAC+TGG + chr4.1:5210657-5210676 MS.gene06018:intron 35.0%
CTAAACTGATTGACAACCAA+GGG - chr4.1:5208243-5208262 None:intergenic 35.0%
GAAGCTCCTATCAAAATTTG+TGG + chr4.1:5207690-5207709 MS.gene06018:CDS 35.0%
GAGAAAGACTACATGAGTAA+AGG + chr4.1:5209638-5209657 MS.gene06018:intron 35.0%
GATCCTGATAAAGATCTTGA+GGG + chr4.1:5209302-5209321 MS.gene06018:CDS 35.0%
GTCATCTGTAAGTGTTAAAC+TGG + chr4.1:5208825-5208844 MS.gene06018:intron 35.0%
TAAACTGATTGACAACCAAG+GGG - chr4.1:5208242-5208261 None:intergenic 35.0%
TCAAACTCACCACAGTAATT+TGG - chr4.1:5210029-5210048 None:intergenic 35.0%
TGATAAAGATCTTGAGGGAT+GGG + chr4.1:5209307-5209326 MS.gene06018:CDS 35.0%
TGATCCTGATAAAGATCTTG+AGG + chr4.1:5209301-5209320 MS.gene06018:CDS 35.0%
TTAACACTTACAGATGACAG+TGG - chr4.1:5208823-5208842 None:intergenic 35.0%
TTCTATGTATATGTGCATGG+GGG + chr4.1:5210441-5210460 MS.gene06018:intron 35.0%
TTCTTTCTTCTGTGAATTCC+CGG + chr4.1:5208283-5208302 MS.gene06018:intron 35.0%
! ACCATTTTCTTGTGGTTTCT+AGG + chr4.1:5210924-5210943 MS.gene06018:intron 35.0%
! ACGGGTCGACTAAAATTTTT+AGG + chr4.1:5211055-5211074 MS.gene06018:intron 35.0%
! AGGGGTATATAAGTGAGAAA+TGG + chr4.1:5210944-5210963 MS.gene06018:intron 35.0%
! CACAATTCACCATTTTCTTG+TGG + chr4.1:5210916-5210935 MS.gene06018:intron 35.0%
! CCATTTTCTTGTGGTTTCTA+GGG + chr4.1:5210925-5210944 MS.gene06018:intron 35.0%
! CGAGGTGTTTCATTTACATT+TGG + chr4.1:5209341-5209360 MS.gene06018:CDS 35.0%
! GCTTCAAGTTCAAGAAGATT+AGG - chr4.1:5207675-5207694 None:intergenic 35.0%
! GTGAACGTTGAATCTCTTTT+TGG - chr4.1:5210880-5210899 None:intergenic 35.0%
! TCTTAACTTGGTAACAGCAT+AGG - chr4.1:5210812-5210831 None:intergenic 35.0%
! TTTAATTAAAGCGGCACTGA+GGG + chr4.1:5207901-5207920 MS.gene06018:intron 35.0%
!! AGTAAGAGTGTGTTTGGTTT+TGG - chr4.1:5208607-5208626 None:intergenic 35.0%
!! CATTTTCTTGTGGTTTCTAG+GGG + chr4.1:5210926-5210945 MS.gene06018:intron 35.0%
!! CTCTAAAGTAAGAGTGTGTT+TGG - chr4.1:5208613-5208632 None:intergenic 35.0%
!! TGCATGTTTGATTTGACGTT+TGG + chr4.1:5208503-5208522 MS.gene06018:intron 35.0%
!! TTTTAATTAAAGCGGCACTG+AGG + chr4.1:5207900-5207919 MS.gene06018:intron 35.0%
!!! CTTTTAAGGCTGTTCGAATA+CGG + chr4.1:5208894-5208913 MS.gene06018:CDS 35.0%
!!! GGAAGCTTTTTTTTTTTGGG+TGG - chr4.1:5211004-5211023 None:intergenic 35.0%
!!! TTTTAAGGCTGTTCGAATAC+GGG + chr4.1:5208895-5208914 MS.gene06018:CDS 35.0%
!!! TTTTTTTTTTTGGGTGGGGA+GGG - chr4.1:5210998-5211017 None:intergenic 35.0%
AAAAGCCCACTTATCTAACG+TGG + chr4.1:5208439-5208458 MS.gene06018:intron 40.0%
AAACCCAAAAACACACCACA+AGG - chr4.1:5208349-5208368 None:intergenic 40.0%
AAAGTCCCAGATCATGGTTT+GGG + chr4.1:5208526-5208545 MS.gene06018:intron 40.0%
AAGAAGGGCAAAGTTGGATT+TGG + chr4.1:5210119-5210138 MS.gene06018:CDS 40.0%
AAGCTTGTATCAGCGAAGAA+CGG + chr4.1:5207567-5207586 MS.gene06018:CDS 40.0%
ACCCTGGAATAACAGGTATA+TGG - chr4.1:5211209-5211228 None:intergenic 40.0%
ACTGAAGTCTTCCGATAAGA+AGG + chr4.1:5210103-5210122 MS.gene06018:CDS 40.0%
AGAAATGGCTATGCTCTTTG+GGG + chr4.1:5210959-5210978 MS.gene06018:intron 40.0%
AGAAGATCCTTTGCATGCAT+GGG + chr4.1:5209180-5209199 MS.gene06018:CDS 40.0%
AGACAAGGCAATCAAACTAG+GGG - chr4.1:5208753-5208772 None:intergenic 40.0%
AGGAGAACTTCTTTCTTCTC+AGG + chr4.1:5209024-5209043 MS.gene06018:CDS 40.0%
AGTATCTCTTCCTGTTGAGA+TGG + chr4.1:5208212-5208231 MS.gene06018:intron 40.0%
AGTTGCCACGTTAGATAAGT+GGG - chr4.1:5208447-5208466 None:intergenic 40.0%
ATATACCTGTTATTCCAGGG+TGG + chr4.1:5211208-5211227 MS.gene06018:intron 40.0%
ATCTCAACAGGAAGAGATAC+TGG - chr4.1:5208213-5208232 None:intergenic 40.0%
ATGCACAACACGACTGAATA+TGG + chr4.1:5209733-5209752 MS.gene06018:intron 40.0%
ATTATAGCCAAGGATGGCAT+TGG - chr4.1:5209481-5209500 None:intergenic 40.0%
CATCCCTCAAGATCTTTATC+AGG - chr4.1:5209308-5209327 None:intergenic 40.0%
CATGATCTGGCACATCAATA+GGG - chr4.1:5209256-5209275 None:intergenic 40.0%
CCCTAGAAACCACAAGAAAA+TGG - chr4.1:5210928-5210947 None:intergenic 40.0%
CGTATTCGAACAGCCTTAAA+AGG - chr4.1:5208896-5208915 None:intergenic 40.0%
CTGAAGTCTTCCGATAAGAA+GGG + chr4.1:5210104-5210123 MS.gene06018:CDS 40.0%
CTGATAAAGATCTTGAGGGA+TGG + chr4.1:5209306-5209325 MS.gene06018:CDS 40.0%
CTTGGAGATTATGTTGATCG+TGG + chr4.1:5208948-5208967 MS.gene06018:CDS 40.0%
GAGAAATGGCTATGCTCTTT+GGG + chr4.1:5210958-5210977 MS.gene06018:intron 40.0%
GAGAACTTCTTTCTTCTCAG+GGG + chr4.1:5209026-5209045 MS.gene06018:CDS 40.0%
GAGACAAGGCAATCAAACTA+GGG - chr4.1:5208754-5208773 None:intergenic 40.0%
GATAAAGATCTTGAGGGATG+GGG + chr4.1:5209308-5209327 MS.gene06018:CDS 40.0%
GCAGCCCCCAAAATATTAAA+AGG - chr4.1:5209939-5209958 None:intergenic 40.0%
GCCATATACCTGTTATTCCA+GGG + chr4.1:5211205-5211224 MS.gene06018:intron 40.0%
GCCTCCATCAATCGTATTTA+TGG + chr4.1:5209062-5209081 MS.gene06018:CDS 40.0%
GCCTTAAAAGGTCTGAAAAC+TGG - chr4.1:5208884-5208903 None:intergenic 40.0%
GGAGAACTTCTTTCTTCTCA+GGG + chr4.1:5209025-5209044 MS.gene06018:CDS 40.0%
GTATCTCTTCCTGTTGAGAT+GGG + chr4.1:5208213-5208232 MS.gene06018:intron 40.0%
TAGTCGACCCGTATACATAA+GGG - chr4.1:5211047-5211066 None:intergenic 40.0%
TATACCTGTTATTCCAGGGT+GGG + chr4.1:5211209-5211228 MS.gene06018:intron 40.0%
TATCGGAAGACTTCAGTATC+TGG - chr4.1:5210100-5210119 None:intergenic 40.0%
TCCAACTTTGCCCTTCTTAT+CGG - chr4.1:5210117-5210136 None:intergenic 40.0%
TGAGAAATGGCTATGCTCTT+TGG + chr4.1:5210957-5210976 MS.gene06018:intron 40.0%
TGAGACAAGGCAATCAAACT+AGG - chr4.1:5208755-5208774 None:intergenic 40.0%
TGCTTCTTTCGACACTTCTT+TGG + chr4.1:5208012-5208031 MS.gene06018:intron 40.0%
TTAGTCGACCCGTATACATA+AGG - chr4.1:5211048-5211067 None:intergenic 40.0%
TTCCGTAAACCAGATACTCA+AGG - chr4.1:5208714-5208733 None:intergenic 40.0%
TTCTCTGCACCAAATTACTG+TGG + chr4.1:5210017-5210036 MS.gene06018:CDS 40.0%
TTGTGTGTGTATCTTCCTTC+AGG + chr4.1:5208780-5208799 MS.gene06018:intron 40.0%
! ATTGGGATTTTGCTTCGCTT+AGG + chr4.1:5209868-5209887 MS.gene06018:intron 40.0%
! ATTTACATTTGGGGCTGACA+AGG + chr4.1:5209352-5209371 MS.gene06018:CDS 40.0%
! CACCTTGAGTATCTGGTTTA+CGG + chr4.1:5208709-5208728 MS.gene06018:intron 40.0%
! GCCAGTTTTCAGACCTTTTA+AGG + chr4.1:5208880-5208899 MS.gene06018:CDS 40.0%
! TCAGCTTTGTACTTCTGCTA+AGG + chr4.1:5207632-5207651 MS.gene06018:CDS 40.0%
! TTGGGATTTTGCTTCGCTTA+GGG + chr4.1:5209869-5209888 MS.gene06018:intron 40.0%
! TTTAAGGCTGTTCGAATACG+GGG + chr4.1:5208896-5208915 MS.gene06018:CDS 40.0%
! TTTTGCCCAAACCATGATCT+GGG - chr4.1:5208534-5208553 None:intergenic 40.0%
!! TCAGTTTAGTTTGAAACCCC+TGG + chr4.1:5208254-5208273 MS.gene06018:intron 40.0%
!! TGTGGTGAGTTTGATAATGC+CGG + chr4.1:5210035-5210054 MS.gene06018:CDS 40.0%
!!! CTTTTTTTTTTTGGGTGGGG+AGG - chr4.1:5210999-5211018 None:intergenic 40.0%
!!! GTGTGTTTGGTTTTGGCATT+CGG - chr4.1:5208600-5208619 None:intergenic 40.0%
!!! GTTTTTTGCCAAACGTAAGC+TGG + chr4.1:5209986-5210005 MS.gene06018:CDS 40.0%
!!! TTTTTTTTTTGGGTGGGGAG+GGG - chr4.1:5210997-5211016 None:intergenic 40.0%
AAAGGTCTGAAAACTGGCCA+TGG - chr4.1:5208878-5208897 None:intergenic 45.0%
AAGATCCTTTGCATGCATGG+GGG + chr4.1:5209182-5209201 MS.gene06018:CDS 45.0%
AAGCTACAGGGTTCATTACC+TGG - chr4.1:5209427-5209446 None:intergenic 45.0%
AAGCTGACGAATATCAGCCT+CGG - chr4.1:5207619-5207638 None:intergenic 45.0%
AATTGAGCGGTGAGACTTGA+AGG + chr4.1:5209610-5209629 MS.gene06018:intron 45.0%
ACAAGGCAATCAAACTAGGG+GGG - chr4.1:5208751-5208770 None:intergenic 45.0%
AGAAGAAAGAAGCTCGACCA+GGG - chr4.1:5208274-5208293 None:intergenic 45.0%
AGGTAATGAACCCTGTAGCT+TGG + chr4.1:5209426-5209445 MS.gene06018:intron 45.0%
AGTGCTGCACAAATGTCAAC+AGG - chr4.1:5208387-5208406 None:intergenic 45.0%
ATCCACACTCATCATAGCAC+CGG - chr4.1:5210057-5210076 None:intergenic 45.0%
CAGTATGCTCCTGACATAAG+GGG - chr4.1:5208326-5208345 None:intergenic 45.0%
CCATGATCTGGCACATCAAT+AGG - chr4.1:5209257-5209276 None:intergenic 45.0%
CCTATTGATGTGCCAGATCA+TGG + chr4.1:5209254-5209273 MS.gene06018:CDS 45.0%
CTGAGGCTGTATGAGATAGA+AGG + chr4.1:5208185-5208204 MS.gene06018:intron 45.0%
CTTCTGTGAATTCCCGGTTT+AGG + chr4.1:5208289-5208308 MS.gene06018:intron 45.0%
GAAAGTCCCAGATCATGGTT+TGG + chr4.1:5208525-5208544 MS.gene06018:intron 45.0%
GAAGATCCTTTGCATGCATG+GGG + chr4.1:5209181-5209200 MS.gene06018:CDS 45.0%
GAAGCAAGTTCATCTTACCG+AGG + chr4.1:5207599-5207618 MS.gene06018:CDS 45.0%
GACAAGGCAATCAAACTAGG+GGG - chr4.1:5208752-5208771 None:intergenic 45.0%
GAGAAGATCCTTTGCATGCA+TGG + chr4.1:5209179-5209198 MS.gene06018:CDS 45.0%
GAGTTGCCACGTTAGATAAG+TGG - chr4.1:5208448-5208467 None:intergenic 45.0%
GCAGTATGCTCCTGACATAA+GGG - chr4.1:5208327-5208346 None:intergenic 45.0%
GGCAATAACTCATCAAGACC+TGG + chr4.1:5210140-5210159 MS.gene06018:CDS 45.0%
GGCCATATACCTGTTATTCC+AGG + chr4.1:5211204-5211223 MS.gene06018:intron 45.0%
GTTGACATTTGTGCAGCACT+CGG + chr4.1:5208387-5208406 MS.gene06018:intron 45.0%
GTTTCTACGATGAGTGCAAG+AGG + chr4.1:5209084-5209103 MS.gene06018:CDS 45.0%
GTTTGGAAAGTCCCAGATCA+TGG + chr4.1:5208520-5208539 MS.gene06018:intron 45.0%
TACAGTCACCAGCTTACGTT+TGG - chr4.1:5209997-5210016 None:intergenic 45.0%
TCCGATAAGAAGGGCAAAGT+TGG + chr4.1:5210113-5210132 MS.gene06018:CDS 45.0%
TCTGATATGTAGAGCTCACC+AGG + chr4.1:5209406-5209425 MS.gene06018:CDS 45.0%
TGATTGACCAATGCCATCCT+TGG + chr4.1:5209471-5209490 MS.gene06018:intron 45.0%
TGTGCAGCACTCGGTTTAAA+TGG + chr4.1:5208396-5208415 MS.gene06018:intron 45.0%
TGTGTTTCCTCATTGCGGAT+GGG + chr4.1:5208149-5208168 MS.gene06018:intron 45.0%
TTAAGGCTGTTCGAATACGG+GGG + chr4.1:5208897-5208916 MS.gene06018:CDS 45.0%
TTGTGTTTCCTCATTGCGGA+TGG + chr4.1:5208148-5208167 MS.gene06018:intron 45.0%
TTGTTTGCAGGAGATGTCCA+TGG + chr4.1:5208858-5208877 MS.gene06018:intron 45.0%
! ACCAGATACTCAAGGTGTCA+AGG - chr4.1:5208706-5208725 None:intergenic 45.0%
! ACTGCCTTGTGGTGTGTTTT+TGG + chr4.1:5208342-5208361 MS.gene06018:intron 45.0%
! CCAGATACTCAAGGTGTCAA+GGG - chr4.1:5208705-5208724 None:intergenic 45.0%
! CTGCCTTGTGGTGTGTTTTT+GGG + chr4.1:5208343-5208362 MS.gene06018:intron 45.0%
! CTTTTGCCCAAACCATGATC+TGG - chr4.1:5208535-5208554 None:intergenic 45.0%
! GGAGGTATAATGTTCGTCTC+TGG + chr4.1:5209105-5209124 MS.gene06018:CDS 45.0%
! TAAGCACATGCTTTGAGCAG+AGG + chr4.1:5209574-5209593 MS.gene06018:intron 45.0%
! TGGGATTTTGCTTCGCTTAG+GGG + chr4.1:5209870-5209889 MS.gene06018:intron 45.0%
! TGTCTGTGTGCTGGTGTATT+GGG + chr4.1:5209851-5209870 MS.gene06018:intron 45.0%
! TTGTCTGTGTGCTGGTGTAT+TGG + chr4.1:5209850-5209869 MS.gene06018:intron 45.0%
!!! TTTTTTTTTGGGTGGGGAGG+GGG - chr4.1:5210996-5211015 None:intergenic 45.0%
!! AATTAAAAAAAAAAAAAAAG+AGG - chr4.1:5209800-5209819 None:intergenic 5.0%
!!! TTAATTTTAATTTTTAATTG+GGG + chr4.1:5207855-5207874 MS.gene06018:intron 5.0%
!!! TTTTTTTTTTTTAATTAAAG+CGG + chr4.1:5207892-5207911 MS.gene06018:intron 5.0%
!!! TTTTTTTTTTTTTTTAATTG+CGG + chr4.1:5209801-5209820 MS.gene06018:intron 5.0%
AAAGTCCCCCATGCATGCAA+AGG - chr4.1:5209190-5209209 None:intergenic 50.0%
AAGGGGTTTCCCATCTCAAC+AGG - chr4.1:5208225-5208244 None:intergenic 50.0%
ACCTGGAACTCCACCTCATA+AGG + chr4.1:5210157-5210176 MS.gene06018:CDS 50.0%
ACCTTATGAGGTGGAGTTCC+AGG - chr4.1:5210161-5210180 None:intergenic 50.0%
CAGAAGAAAGAAGCTCGACC+AGG - chr4.1:5208275-5208294 None:intergenic 50.0%
CCCTTGACACCTTGAGTATC+TGG + chr4.1:5208702-5208721 MS.gene06018:intron 50.0%
CTGTGAATTCCCGGTTTAGG+TGG + chr4.1:5208292-5208311 MS.gene06018:intron 50.0%
GAAGAAAGAAGCTCGACCAG+GGG - chr4.1:5208273-5208292 None:intergenic 50.0%
GCAATCAAACTAGGGGGGAA+GGG - chr4.1:5208746-5208765 None:intergenic 50.0%
GGATGGGGAGAAAATGATCG+AGG + chr4.1:5209323-5209342 MS.gene06018:CDS 50.0%
GGCAGTATGCTCCTGACATA+AGG - chr4.1:5208328-5208347 None:intergenic 50.0%
GTGTTTCCTCATTGCGGATG+GGG + chr4.1:5208150-5208169 MS.gene06018:intron 50.0%
TATCAGGATCAGCCCACAGA+AGG - chr4.1:5209292-5209311 None:intergenic 50.0%
TCCCGGTTTAGGTGGTATCT+GGG + chr4.1:5208300-5208319 MS.gene06018:intron 50.0%
TCGTCTACTAGAGCAGCAAC+CGG - chr4.1:5209161-5209180 None:intergenic 50.0%
TCTACGATGAGTGCAAGAGG+AGG + chr4.1:5209087-5209106 MS.gene06018:CDS 50.0%
TCTTCCCACCCTGGAATAAC+AGG - chr4.1:5211216-5211235 None:intergenic 50.0%
TGGGGGGTTATAATGCACTG+AGG + chr4.1:5208168-5208187 MS.gene06018:intron 50.0%
TGTTGAGATGGGAAACCCCT+TGG + chr4.1:5208224-5208243 MS.gene06018:intron 50.0%
TGTTTCCTCATTGCGGATGG+GGG + chr4.1:5208151-5208170 MS.gene06018:intron 50.0%
TTCCCGGTTTAGGTGGTATC+TGG + chr4.1:5208299-5208318 MS.gene06018:intron 50.0%
! GATTGATGGAGGCGCATTCA+TGG - chr4.1:5209055-5209074 None:intergenic 50.0%
! GCGTCTCAGGTTGTAGAAGA+TGG + chr4.1:5209957-5209976 MS.gene06018:intron 50.0%
ACCCCGGCCCTTATGTATAC+GGG + chr4.1:5211037-5211056 MS.gene06018:intron 55.0%
ACCCGTATACATAAGGGCCG+GGG - chr4.1:5211041-5211060 None:intergenic 55.0%
ATAACCCCCCATCCGCAATG+AGG - chr4.1:5208159-5208178 None:intergenic 55.0%
CCTTCTCTGCGACCTTCTGT+GGG + chr4.1:5209277-5209296 MS.gene06018:CDS 55.0%
CGACCCGTATACATAAGGGC+CGG - chr4.1:5211043-5211062 None:intergenic 55.0%
GACCCCGGCCCTTATGTATA+CGG + chr4.1:5211036-5211055 MS.gene06018:intron 55.0%
GACCCGTATACATAAGGGCC+GGG - chr4.1:5211042-5211061 None:intergenic 55.0%
GCCCAGATACCACCTAAACC+GGG - chr4.1:5208304-5208323 None:intergenic 55.0%
GGCAATCAAACTAGGGGGGA+AGG - chr4.1:5208747-5208766 None:intergenic 55.0%
GGCCCAGATACCACCTAAAC+CGG - chr4.1:5208305-5208324 None:intergenic 55.0%
GTATCTGGGCCCCTTATGTC+AGG + chr4.1:5208314-5208333 MS.gene06018:intron 55.0%
GTTTCCTCATTGCGGATGGG+GGG + chr4.1:5208152-5208171 MS.gene06018:intron 55.0%
TCGCAGAGAAGGCCATGATC+TGG - chr4.1:5209269-5209288 None:intergenic 55.0%
! GTCAGGAGCATACTGCCTTG+TGG + chr4.1:5208331-5208350 MS.gene06018:intron 55.0%
!! TATTTTGGGGGCTGCGTCTC+AGG + chr4.1:5209944-5209963 MS.gene06018:intron 55.0%
!! TGCCGGTGCTATGATGAGTG+TGG + chr4.1:5210052-5210071 MS.gene06018:CDS 55.0%
CCCACAGAAGGTCGCAGAGA+AGG - chr4.1:5209280-5209299 None:intergenic 60.0%
GCCTTCTCTGCGACCTTCTG+TGG + chr4.1:5209276-5209295 MS.gene06018:CDS 60.0%
TCCTGTGGGAGAAGTGACCC+CGG + chr4.1:5211021-5211040 MS.gene06018:intron 60.0%
GCCGGGGTCACTTCTCCCAC+AGG - chr4.1:5211025-5211044 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 5207534 5211240 5207534 ID=MS.gene06018
chr4.1 mRNA 5207534 5211240 5207534 ID=MS.gene06018.t1;Parent=MS.gene06018
chr4.1 exon 5207534 5207711 5207534 ID=MS.gene06018.t1.exon1;Parent=MS.gene06018.t1
chr4.1 CDS 5207534 5207711 5207534 ID=cds.MS.gene06018.t1;Parent=MS.gene06018.t1
chr4.1 exon 5208868 5209427 5208868 ID=MS.gene06018.t1.exon2;Parent=MS.gene06018.t1
chr4.1 CDS 5208868 5209427 5208868 ID=cds.MS.gene06018.t1;Parent=MS.gene06018.t1
chr4.1 exon 5209966 5210178 5209966 ID=MS.gene06018.t1.exon3;Parent=MS.gene06018.t1
chr4.1 CDS 5209966 5210178 5209966 ID=cds.MS.gene06018.t1;Parent=MS.gene06018.t1
chr4.1 exon 5211226 5211240 5211226 ID=MS.gene06018.t1.exon4;Parent=MS.gene06018.t1
chr4.1 CDS 5211226 5211240 5211226 ID=cds.MS.gene06018.t1;Parent=MS.gene06018.t1
Gene Sequence

>MS.gene06018

ATGGATGATACGGTGCTTGATGATATCATAAAGAAGCTTGTATCAGCGAAGAACGGAAGAACAACGAAGCAAGTTCATCTTACCGAGGCTGATATTCGTCAGCTTTGTACTTCTGCTAAGGAGATCTTTCTCAGTCAACCTAATCTTCTTGAACTTGAAGCTCCTATCAAAATTTGTGGTATCTTTCTTTTTTCTTTTCAATTAGCAATTATTATAATCTTGTTTCTTTGTGCTGATTATTATAATTCATTTTTACTCGTAATCTTCATTTTGTTAGAATTTATGTAATTGAATTGGTAGTGGCACGCAGTTCTGTTAATTTTAATTTTAATTTTTAATTGGGGTCGGGTGATTTATTTTTTTTTTTTTTAATTAAAGCGGCACTGAGGGTAGTTGAACTCGTGAGCTCTTACTTCTGAACGCATAATTTCTGTTAATAGATCATACACTTTTTTAATGAATGGCTAGGTTTTTGTTATGCTTCTTTCGACACTTCTTTGGTAGCTTGAGTTGAATTTGTTTTTGTGGTTTTTGATAGGATTGTTTGGTTTTCTTCAGACAATTAAGTGGTTTTCTGCACGACATCATTTCAAATAAGTTTCTTGTTTAATTATTTGTGTTTCCTCATTGCGGATGGGGGGTTATAATGCACTGAGGCTGTATGAGATAGAAGGAGCCAGTATCTCTTCCTGTTGAGATGGGAAACCCCTTGGTTGTCAATCAGTTTAGTTTGAAACCCCTGGTCGAGCTTCTTTCTTCTGTGAATTCCCGGTTTAGGTGGTATCTGGGCCCCTTATGTCAGGAGCATACTGCCTTGTGGTGTGTTTTTGGGTTTATCTCAAATTTTTGGCCTGTTGACATTTGTGCAGCACTCGGTTTAAATGGTCGATACTTGTAAACATTTTAAAAGCCCACTTATCTAACGTGGCAACTCATAGATTTTAATTTTAGGGATGCAGTGGTATTTAGTGCATGTTTGATTTGACGTTTGGAAAGTCCCAGATCATGGTTTGGGCAAAAGCTTGTCTCTTTTAGCTTTTGCACATACTATGGTTTTGGAGTTCCGAATGCCAAAACCAAACACACTCTTACTTTAGAGCATGTTATCAACTTATCATCAGGTTTTCTTACCTAAAGCTTTTCCATTTTGTTAAAAATATGAATGTTACCCTTGACACCTTGAGTATCTGGTTTACGGAATTAAATATTCCCTTCCCCCCTAGTTTGATTGCCTTGTCTCATTATGTTGTGTGTGTATCTTCCTTCAGGTCCTATTTTGCTTTTGACCACTGTCATCTGTAAGTGTTAAACTGGTTTAAACAATTTGTTTGCAGGAGATGTCCATGGCCAGTTTTCAGACCTTTTAAGGCTGTTCGAATACGGGGGATACCCACCTGAAGCAAATTACTTATTTCTTGGAGATTATGTTGATCGTGGTAAGCAGAGCATAGAGACAATATGCTTGCTCCTTGCATATAAAATCAAATACAAGGAGAACTTCTTTCTTCTCAGGGGCAACCATGAATGCGCCTCCATCAATCGTATTTATGGTTTCTACGATGAGTGCAAGAGGAGGTATAATGTTCGTCTCTGGAAGACGTTTACTGATTGCTTTAATTGTTTACCGGTTGCTGCTCTAGTAGACGAGAAGATCCTTTGCATGCATGGGGGACTTTCTCCTGAACTTAAAAACTTGGATCAGATACGGAATATTGCGCGCCCTATTGATGTGCCAGATCATGGCCTTCTCTGCGACCTTCTGTGGGCTGATCCTGATAAAGATCTTGAGGGATGGGGAGAAAATGATCGAGGTGTTTCATTTACATTTGGGGCTGACAAGGTTGTTGAGTTTCTTGAGCATCATGATCTTGATCTGATATGTAGAGCTCACCAGGTAATGAACCCTGTAGCTTGGTTAATTTCAATGATTTTACTCTTGATTGACCAATGCCATCCTTGGCTATAATTTATAAATAGTACCGTCTGTATATACAATAAGTTTGAAATTTACTGATTATTGCTCAAATTGTTTTAAAAAAATAAGCACATGCTTTGAGCAGAGGTATTTATAATGATAATTGAGCGGTGAGACTTGAAGGAATAAGAGAAAGACTACATGAGTAAAGGATATGACAAAGTTGGGTTTTAAGACAGACAAATTAGTTACTATTGTAAAGTCTTGTTAATTTATGATTTTTAATGCACAACACGACTGAATATGGTTTTCTTATTTATGTTCAATTGACGATCCTTTGTTTAACTACCTCTTTTTTTTTTTTTTTAATTGCGGATGTCTTTGTATACTGTATTATATATTTGTCTGTGTGCTGGTGTATTGGGATTTTGCTTCGCTTAGGGGTCTTAATTCTTTTTAATAAACCAGTAAATCTGATCTGATGTTTCCTTTTAATATTTTGGGGGCTGCGTCTCAGGTTGTAGAAGATGGATATGAGTTTTTTGCCAAACGTAAGCTGGTGACTGTATTCTCTGCACCAAATTACTGTGGTGAGTTTGATAATGCCGGTGCTATGATGAGTGTGGATGACTCATTGACATGCTCTTTCCAGATACTGAAGTCTTCCGATAAGAAGGGCAAAGTTGGATTTGGCAATAACTCATCAAGACCTGGAACTCCACCTCATAAGGTAAAAATATAATGATTGTTATGCATGTACTTGTTTGTTAAAACACACGTGATTCTATGTATATGTGTATGGGTGTCTATGTATTGCATGTTTAAATGCATGTCATAAACTTGAATTATAATTAAAGAAGTCAAAAGTTTCATAACTTCAACTAGCAAATATGAAGTTTCATGTCACTTAAGTTGGTTATTGAACATATGATGATATGCCTGATTTTGTGTATAGATTTATATATCATTTTAAGCACTAAGACATTATTTGATTCTATGTATATGTGCATGGGGGTCTATGTATTGCATGTTTAAATGCATAATATAAACTTGAGTTATAACCAAAGAATTCAGAAGTTTCATAACTTCAACTAGTATTAGCAAATATGAAGTTTCATGTCACTTAAGTTGGTTATTGAACACATGATGATATGCCGATTTTGTGTAGATTTATATATCATATTAAGCATCAAGACATCAAAGAAGTCAGAAGTTTCACAACTTCTACTGGTATTGTCGTATTGAACATATGACGATATACCTGATTTTGTGTAGATTTATGTATCATTTTAAGTACTAAGACATGATACAGATAATTCGTTCGAAGTGCATTGCTTTAGAGAAACATCTTGGGTGAAATCCTATGCTGTTACCAAGTTAAGACAAGTTTAAAAACTATTAATGGTTTTCCCATCAAAATTAAAGTGTCCAAAAAGAGATTCAACGTTCACGGGCATTAGCCATAGACACAATTCACCATTTTCTTGTGGTTTCTAGGGGTATATAAGTGAGAAATGGCTATGCTCTTTGGGGCAATTCTATCTCCCCCTCCCCACCCAAAAAAAAAAAGCTTCCTGTGGGAGAAGTGACCCCGGCCCTTATGTATACGGGTCGACTAAAATTTTTAGGACTTCATTTATTTACTTTGTAAAATTACTTTAACTGTTTGTTTATAAAAGCATGAGAAAATTGACTTGCTACTTTCTTTTGATTGAATCACATGCTGCATATCTTTTGTGATATTTAATGAGTTCTGGCCATATACCTGTTATTCCAGGGTGGGAAGAATTAA

Protein sequence

>MS.gene06018.t1

MDDTVLDDIIKKLVSAKNGRTTKQVHLTEADIRQLCTSAKEIFLSQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKIKYKENFFLLRGNHECASINRIYGFYDECKRRYNVRLWKTFTDCFNCLPVAALVDEKILCMHGGLSPELKNLDQIRNIARPIDVPDHGLLCDLLWADPDKDLEGWGENDRGVSFTFGADKVVEFLEHHDLDLICRAHQVVEDGYEFFAKRKLVTVFSAPNYCGEFDNAGAMMSVDDSLTCSFQILKSSDKKGKVGFGNNSSRPGTPPHKGGKN