Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071988.t1 | XP_003593095.1 | 96.8 | 217 | 4 | 2 | 7 | 223 | 4 | 217 | 3.70E-100 | 374.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071988.t1 | Q9LPZ4 | 45.8 | 216 | 103 | 3 | 4 | 219 | 3 | 204 | 1.1e-31 | 138.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071988.t1 | A2Q490 | 96.8 | 217 | 4 | 2 | 7 | 223 | 4 | 217 | 2.7e-100 | 374.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene071988 | 0.812779 | 3.57E-51 | -1.69E-46 |
| MS.gene049341 | MS.gene071988 | 0.804534 | 2.06E-49 | -1.69E-46 |
| MS.gene049501 | MS.gene071988 | 0.811095 | 8.31E-51 | -1.69E-46 |
| MS.gene050020 | MS.gene071988 | 0.813597 | 2.36E-51 | -1.69E-46 |
| MS.gene050438 | MS.gene071988 | 0.821198 | 4.59E-53 | -1.69E-46 |
| MS.gene050586 | MS.gene071988 | 0.80798 | 3.88E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene071988 | 0.805852 | 1.09E-49 | -1.69E-46 |
| MS.gene050721 | MS.gene071988 | 0.802334 | 5.89E-49 | -1.69E-46 |
| MS.gene050724 | MS.gene071988 | 0.810682 | 1.02E-50 | -1.69E-46 |
| MS.gene050815 | MS.gene071988 | 0.814258 | 1.69E-51 | -1.69E-46 |
| MS.gene051328 | MS.gene071988 | 0.80764 | 4.58E-50 | -1.69E-46 |
| MS.gene05157 | MS.gene071988 | 0.813077 | 3.07E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene071988 | 0.807926 | 3.98E-50 | -1.69E-46 |
| MS.gene052020 | MS.gene071988 | 0.810995 | 8.73E-51 | -1.69E-46 |
| MS.gene052611 | MS.gene071988 | 0.815522 | 8.86E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene071988 | 0.813692 | 2.25E-51 | -1.69E-46 |
| MS.gene053566 | MS.gene071988 | 0.809964 | 1.46E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene071988 | 0.81554 | 8.77E-52 | -1.69E-46 |
| MS.gene055512 | MS.gene071988 | 0.820917 | 5.32E-53 | -1.69E-46 |
| MS.gene055778 | MS.gene071988 | 0.805337 | 1.40E-49 | -1.69E-46 |
| MS.gene057314 | MS.gene071988 | 0.808381 | 3.19E-50 | -1.69E-46 |
| MS.gene057444 | MS.gene071988 | 0.808287 | 3.34E-50 | -1.69E-46 |
| MS.gene057693 | MS.gene071988 | 0.826625 | 2.45E-54 | -1.69E-46 |
| MS.gene058084 | MS.gene071988 | 0.80943 | 1.90E-50 | -1.69E-46 |
| MS.gene060429 | MS.gene071988 | 0.831774 | 1.38E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071988.t1 | MTR_2g007770 | 95.089 | 224 | 5 | 3 | 1 | 224 | 1 | 218 | 1.89e-147 | 409 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071988.t1 | AT1G11400 | 54.795 | 219 | 79 | 5 | 4 | 219 | 3 | 204 | 3.36e-67 | 206 |
| MS.gene071988.t1 | AT1G11400 | 54.795 | 219 | 79 | 5 | 4 | 219 | 3 | 204 | 3.36e-67 | 206 |
| MS.gene071988.t1 | AT1G11400 | 54.795 | 219 | 79 | 5 | 4 | 219 | 3 | 204 | 3.36e-67 | 206 |
| MS.gene071988.t1 | AT1G11400 | 54.795 | 219 | 79 | 5 | 4 | 219 | 3 | 204 | 3.36e-67 | 206 |
| MS.gene071988.t1 | AT1G11400 | 54.795 | 219 | 79 | 5 | 4 | 219 | 3 | 204 | 3.36e-67 | 206 |
| MS.gene071988.t1 | AT1G11400 | 54.795 | 219 | 79 | 5 | 4 | 219 | 3 | 204 | 3.36e-67 | 206 |
Find 52 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAATGAACTAGCTGTTTC+TGG | 0.224340 | 2.4:-75156889 | MS.gene071988:CDS |
| TTCATTCCTCTTAACAGCTT+TGG | 0.286325 | 2.4:+75157274 | None:intergenic |
| TACCATCGGGTCGACGGGTC+GGG | 0.304301 | 2.4:+75157547 | None:intergenic |
| AAAACAATTAGAGGATAAAA+AGG | 0.311163 | 2.4:-75155526 | MS.gene071988:CDS |
| AGGATCCGTTCACCATCTTT+TGG | 0.318683 | 2.4:+75157573 | None:intergenic |
| CTCTGAAGCTTCCACGGAAT+TGG | 0.333154 | 2.4:+75156840 | None:intergenic |
| AAACATACGAGGGCGGGTTT+AGG | 0.375038 | 2.4:+75157459 | None:intergenic |
| GTTAGAGAAGCTAGCAAAGC+TGG | 0.376043 | 2.4:-75155568 | MS.gene071988:CDS |
| CGGGTCGACGGGTCGGGGCG+AGG | 0.394869 | 2.4:+75157553 | None:intergenic |
| TCCTGGTTATGACCCTCAAT+TGG | 0.399616 | 2.4:-75157312 | MS.gene071988:CDS |
| TAAGGAGCTAAAACAATTAG+AGG | 0.420831 | 2.4:-75155535 | MS.gene071988:CDS |
| AAAGGAAAAGAAACGCCTTC+AGG | 0.428494 | 2.4:-75157246 | MS.gene071988:intron |
| GCCTCACACATTGGTCCTCC+TGG | 0.436982 | 2.4:-75157329 | MS.gene071988:CDS |
| GTGGAAGCTTCAGAGCCAAT+TGG | 0.438921 | 2.4:-75156832 | MS.gene071988:CDS |
| CTAAAACCAAAGCTGTTAAG+AGG | 0.446552 | 2.4:-75157280 | MS.gene071988:CDS |
| CTACTATCTTCAACTACAGT+TGG | 0.455472 | 2.4:+75156964 | None:intergenic |
| TATGCAGATGAGAAAGGAAA+TGG | 0.458526 | 2.4:-75157351 | MS.gene071988:intron |
| AGCTAGCAAAGCTGGAAGAT+TGG | 0.464331 | 2.4:-75155560 | MS.gene071988:CDS |
| ACCATCGGGTCGACGGGTCG+GGG | 0.470543 | 2.4:+75157548 | None:intergenic |
| ATAAATTATGCAGATGAGAA+AGG | 0.475248 | 2.4:-75157357 | MS.gene071988:intron |
| GTACCATCGGGTCGACGGGT+CGG | 0.481179 | 2.4:+75157546 | None:intergenic |
| AAATCTTGAGCCGACCCAAT+TGG | 0.483261 | 2.4:+75156817 | None:intergenic |
| TAACCAGCTCTGATGCGAAC+TGG | 0.486717 | 2.4:+75157513 | None:intergenic |
| TTAGGTTTAGAATCCAATTG+AGG | 0.488147 | 2.4:+75157299 | None:intergenic |
| GCTAGCTTCTCTAACTGCTC+CGG | 0.496763 | 2.4:+75155576 | None:intergenic |
| TAGGTTTAGAATCCAATTGA+GGG | 0.507175 | 2.4:+75157300 | None:intergenic |
| AAATAGCGACTTCATCTTGA+GGG | 0.509940 | 2.4:+75157487 | None:intergenic |
| TCGACTTACAGAAGCCCTAC+AGG | 0.511134 | 2.4:-75155625 | MS.gene071988:CDS |
| TGGAAGCTTCAGAGCCAATT+GGG | 0.512343 | 2.4:-75156831 | MS.gene071988:CDS |
| AATTGGCTCTGAAGCTTCCA+CGG | 0.517291 | 2.4:+75156834 | None:intergenic |
| TGAAGAAAACATACGAGGGC+GGG | 0.517547 | 2.4:+75157453 | None:intergenic |
| TGCAGAGCAAGATTTAAATC+CGG | 0.518446 | 2.4:-75155595 | MS.gene071988:CDS |
| TGAAGCTTCCACGGAATTGG+TGG | 0.527728 | 2.4:+75156843 | None:intergenic |
| AAAGCAAGAAAATGTAATTG+TGG | 0.532090 | 2.4:-75156941 | MS.gene071988:CDS |
| AAGTGTACCATCGGGTCGAC+GGG | 0.538749 | 2.4:+75157542 | None:intergenic |
| AAACCAGTTCGCATCAGAGC+TGG | 0.552374 | 2.4:-75157516 | MS.gene071988:CDS |
| GAAGTGTACCATCGGGTCGA+CGG | 0.553595 | 2.4:+75157541 | None:intergenic |
| TACTCCTACCACCAATTCCG+TGG | 0.556786 | 2.4:-75156851 | MS.gene071988:CDS |
| AAGCAGAAGCAACCAAAAGA+TGG | 0.558437 | 2.4:-75157585 | MS.gene071988:CDS |
| TCCAATTGAGGGTCATAACC+AGG | 0.565098 | 2.4:+75157311 | None:intergenic |
| GCCCCGACCCGTCGACCCGA+TGG | 0.585070 | 2.4:-75157549 | MS.gene071988:CDS |
| AGCTTCAGAGCCAATTGGGT+CGG | 0.591413 | 2.4:-75156827 | MS.gene071988:CDS |
| AGCAACCAAAAGATGGTGAA+CGG | 0.603941 | 2.4:-75157578 | MS.gene071988:CDS |
| AAGGAAATGGCCTCACACAT+TGG | 0.617975 | 2.4:-75157338 | MS.gene071988:CDS |
| TAAATAGCGACTTCATCTTG+AGG | 0.623261 | 2.4:+75157486 | None:intergenic |
| GCTTCCACGGAATTGGTGGT+AGG | 0.634450 | 2.4:+75156847 | None:intergenic |
| AAAGCTGGAAGATTGGCGTA+AGG | 0.636462 | 2.4:-75155553 | MS.gene071988:CDS |
| ATTGGTGGTAGGAGTAACAA+TGG | 0.641774 | 2.4:+75156858 | None:intergenic |
| ATGAAGAAAACATACGAGGG+CGG | 0.660888 | 2.4:+75157452 | None:intergenic |
| AATAGCGACTTCATCTTGAG+GGG | 0.673199 | 2.4:+75157488 | None:intergenic |
| ACCAGGAGGACCAATGTGTG+AGG | 0.678642 | 2.4:+75157328 | None:intergenic |
| AATTGAGGGTCATAACCAGG+AGG | 0.759387 | 2.4:+75157314 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATTAAAAGCCATTAA+TGG | + | chr2.4:75155752-75155771 | None:intergenic | 15.0% |
| !! | ATAAATTAAAAGCCATTAAT+GGG | + | chr2.4:75155751-75155770 | None:intergenic | 15.0% |
| !! | TAAAAATTGAAACTTTAGTT+AGG | + | chr2.4:75155712-75155731 | None:intergenic | 15.0% |
| !!! | TTTTTAACTTGTTTTGTTAT+GGG | - | chr2.4:75157374-75157393 | MS.gene071988:intron | 15.0% |
| !!! | TTTTTTAACTTGTTTTGTTA+TGG | - | chr2.4:75157373-75157392 | MS.gene071988:intron | 15.0% |
| !! | AAAACAATTAGAGGATAAAA+AGG | - | chr2.4:75157610-75157629 | MS.gene071988:CDS | 20.0% |
| !! | AAGATTCTATAAGAATTCAT+TGG | - | chr2.4:75156424-75156443 | MS.gene071988:intron | 20.0% |
| !! | AATAGAAACAATTCAAATGT+TGG | + | chr2.4:75157314-75157333 | None:intergenic | 20.0% |
| !! | ATTTCAGTATTATTATGGTT+GGG | - | chr2.4:75156901-75156920 | MS.gene071988:CDS | 20.0% |
| !! | TAAATTAAAAGCCATTAATG+GGG | + | chr2.4:75155750-75155769 | None:intergenic | 20.0% |
| !! | TAATAAAGTAATATACCTGA+AGG | + | chr2.4:75155908-75155927 | None:intergenic | 20.0% |
| !! | TATTTCAGTATTATTATGGT+TGG | - | chr2.4:75156900-75156919 | MS.gene071988:CDS | 20.0% |
| !! | TTCTAGTATAAACTCTAATT+TGG | + | chr2.4:75157204-75157223 | None:intergenic | 20.0% |
| !!! | GAATTATATTGATTTCACAT+TGG | - | chr2.4:75156620-75156639 | MS.gene071988:intron | 20.0% |
| ! | AAAGCAAGAAAATGTAATTG+TGG | - | chr2.4:75156195-75156214 | MS.gene071988:intron | 25.0% |
| ! | ATAAATTATGCAGATGAGAA+AGG | - | chr2.4:75155779-75155798 | MS.gene071988:intron | 25.0% |
| ! | CATAAGCTGAAAATTAATGA+GGG | - | chr2.4:75155957-75155976 | MS.gene071988:intron | 25.0% |
| ! | CCAGTATTTCAGTATTATTA+TGG | - | chr2.4:75156896-75156915 | MS.gene071988:CDS | 25.0% |
| ! | CCATAATAATACTGAAATAC+TGG | + | chr2.4:75156899-75156918 | None:intergenic | 25.0% |
| ! | CTATTCACAATCAAAACAAT+GGG | + | chr2.4:75156092-75156111 | None:intergenic | 25.0% |
| ! | CTTCATATTAATCAACTTCT+TGG | - | chr2.4:75157061-75157080 | MS.gene071988:intron | 25.0% |
| ! | TAAGAGGAATGAAAGAAAAA+AGG | - | chr2.4:75155872-75155891 | MS.gene071988:intron | 25.0% |
| ! | TAGACAAGAAACAAAGAAAT+TGG | + | chr2.4:75157181-75157200 | None:intergenic | 25.0% |
| ! | TCAATAAGATCAAGACAAAT+TGG | + | chr2.4:75157037-75157056 | None:intergenic | 25.0% |
| ! | TCTATTCACAATCAAAACAA+TGG | + | chr2.4:75156093-75156112 | None:intergenic | 25.0% |
| ! | TTACTTAACATTTGACTGTT+GGG | - | chr2.4:75157481-75157500 | MS.gene071988:CDS | 25.0% |
| ! | TTTACTTAACATTTGACTGT+TGG | - | chr2.4:75157480-75157499 | MS.gene071988:CDS | 25.0% |
| !! | AGAAAGTAAAAGCATAGTAT+AGG | + | chr2.4:75156379-75156398 | None:intergenic | 25.0% |
| !! | CTCGGATTATATTTAAAATG+AGG | - | chr2.4:75156684-75156703 | MS.gene071988:intron | 25.0% |
| !! | TATGTTATGGATTATTCCAT+TGG | - | chr2.4:75156776-75156795 | MS.gene071988:intron | 25.0% |
| !! | TTTTAAATATAATCCGAGAC+TGG | + | chr2.4:75156682-75156701 | None:intergenic | 25.0% |
| !!! | TTGAATTGTTTCTATTCCAA+AGG | - | chr2.4:75157318-75157337 | MS.gene071988:CDS | 25.0% |
| AGACAAATTGGTAAAAGATC+AGG | + | chr2.4:75157025-75157044 | None:intergenic | 30.0% | |
| ATAACATAACCTATACCAGA+AGG | + | chr2.4:75156764-75156783 | None:intergenic | 30.0% | |
| CATAAAAAAGAGGATCATCA+AGG | + | chr2.4:75156525-75156544 | None:intergenic | 30.0% | |
| CTGCAAAAAGTAAATAACTC+TGG | + | chr2.4:75156128-75156147 | None:intergenic | 30.0% | |
| GAAAATTAATGAGGGTCAAA+GGG | - | chr2.4:75155965-75155984 | MS.gene071988:intron | 30.0% | |
| GAAACTGAATATGTGAATCA+AGG | + | chr2.4:75157148-75157167 | None:intergenic | 30.0% | |
| GACAAATTGGTAAAAGATCA+GGG | + | chr2.4:75157024-75157043 | None:intergenic | 30.0% | |
| GCATAAGCTGAAAATTAATG+AGG | - | chr2.4:75155956-75155975 | MS.gene071988:intron | 30.0% | |
| GGATACCTAAAAATGTAAAG+AGG | + | chr2.4:75156936-75156955 | None:intergenic | 30.0% | |
| GTTATGAAGAAAACATACGA+GGG | + | chr2.4:75155690-75155709 | None:intergenic | 30.0% | |
| TAAGGAGCTAAAACAATTAG+AGG | - | chr2.4:75157601-75157620 | MS.gene071988:CDS | 30.0% | |
| TAAGTTACTAAAACGTTGTG+TGG | + | chr2.4:75156554-75156573 | None:intergenic | 30.0% | |
| TCCATATTATTCTTGTCTAG+TGG | - | chr2.4:75157275-75157294 | MS.gene071988:CDS | 30.0% | |
| TGAAAATTAATGAGGGTCAA+AGG | - | chr2.4:75155964-75155983 | MS.gene071988:intron | 30.0% | |
| TTCTGGTATAGGTTATGTTA+TGG | - | chr2.4:75156763-75156782 | MS.gene071988:intron | 30.0% | |
| TTTAGTAACTTAATGCAGCT+AGG | - | chr2.4:75156562-75156581 | MS.gene071988:intron | 30.0% | |
| ! | CAATTTTCAAACCCCATTAA+TGG | - | chr2.4:75155736-75155755 | MS.gene071988:intron | 30.0% |
| ! | GAATAGCAATTTTGCTAATG+TGG | - | chr2.4:75156719-75156738 | MS.gene071988:intron | 30.0% |
| ! | GTACACCTCTTTACATTTTT+AGG | - | chr2.4:75156928-75156947 | MS.gene071988:CDS | 30.0% |
| ! | TAGGTTTAGAATCCAATTGA+GGG | + | chr2.4:75155839-75155858 | None:intergenic | 30.0% |
| ! | TTAGGTTTAGAATCCAATTG+AGG | + | chr2.4:75155840-75155859 | None:intergenic | 30.0% |
| !! | AATTCGAGCATTGAAAAAGA+AGG | - | chr2.4:75156351-75156370 | MS.gene071988:intron | 30.0% |
| !!! | AACTTGTTTTGTTATGGGAT+AGG | - | chr2.4:75157379-75157398 | MS.gene071988:intron | 30.0% |
| !!! | ATTTTTAGGTATCCTTGTGA+TGG | - | chr2.4:75156942-75156961 | MS.gene071988:CDS | 30.0% |
| !!! | CAGAGTTATTTACTTTTTGC+AGG | - | chr2.4:75156126-75156145 | MS.gene071988:intron | 30.0% |
| !!! | TATTTACTTTTTGCAGGCAA+AGG | - | chr2.4:75156132-75156151 | MS.gene071988:intron | 30.0% |
| AAATAGCGACTTCATCTTGA+GGG | + | chr2.4:75155652-75155671 | None:intergenic | 35.0% | |
| AATATGTGAATCAAGGAGTG+GGG | + | chr2.4:75157141-75157160 | None:intergenic | 35.0% | |
| ACTGTAGCATAGCGAAATTT+GGG | - | chr2.4:75156007-75156026 | MS.gene071988:intron | 35.0% | |
| ATATAGAGAGACAAGTAAGC+AGG | + | chr2.4:75156830-75156849 | None:intergenic | 35.0% | |
| CTAAAACCAAAGCTGTTAAG+AGG | - | chr2.4:75155856-75155875 | MS.gene071988:intron | 35.0% | |
| CTACTATCTTCAACTACAGT+TGG | + | chr2.4:75156175-75156194 | None:intergenic | 35.0% | |
| CTTGGATTCACTCGAATATT+TGG | - | chr2.4:75157079-75157098 | MS.gene071988:intron | 35.0% | |
| GAAACAATGCATAGATACCA+TGG | - | chr2.4:75157221-75157240 | MS.gene071988:intron | 35.0% | |
| GAATATGTGAATCAAGGAGT+GGG | + | chr2.4:75157142-75157161 | None:intergenic | 35.0% | |
| GCCACTAGACAAGAATAATA+TGG | + | chr2.4:75157279-75157298 | None:intergenic | 35.0% | |
| GGATAAAAAGGCTGAAACAT+TGG | - | chr2.4:75157622-75157641 | MS.gene071988:CDS | 35.0% | |
| GGTTATGAAGAAAACATACG+AGG | + | chr2.4:75155691-75155710 | None:intergenic | 35.0% | |
| GTGGAGAACACATAAAAAAG+AGG | + | chr2.4:75156535-75156554 | None:intergenic | 35.0% | |
| GTTATGGGATAGGATTGTAT+GGG | - | chr2.4:75157389-75157408 | MS.gene071988:intron | 35.0% | |
| TAAATAGCGACTTCATCTTG+AGG | + | chr2.4:75155653-75155672 | None:intergenic | 35.0% | |
| TAATTTGGTCCTTCTGGTAT+AGG | - | chr2.4:75156752-75156771 | MS.gene071988:intron | 35.0% | |
| TATGCAGATGAGAAAGGAAA+TGG | - | chr2.4:75155785-75155804 | MS.gene071988:intron | 35.0% | |
| TCGATTAAACTTTCCAGTCT+CGG | - | chr2.4:75156666-75156685 | MS.gene071988:intron | 35.0% | |
| TGAATATGTGAATCAAGGAG+TGG | + | chr2.4:75157143-75157162 | None:intergenic | 35.0% | |
| TGACTATCATAGTCATGACA+TGG | - | chr2.4:75157414-75157433 | MS.gene071988:intron | 35.0% | |
| TGCAGAGCAAGATTTAAATC+CGG | - | chr2.4:75157541-75157560 | MS.gene071988:CDS | 35.0% | |
| TGTTATGGGATAGGATTGTA+TGG | - | chr2.4:75157388-75157407 | MS.gene071988:intron | 35.0% | |
| TTATGGGATAGGATTGTATG+GGG | - | chr2.4:75157390-75157409 | MS.gene071988:intron | 35.0% | |
| TTCATTCCTCTTAACAGCTT+TGG | + | chr2.4:75155865-75155884 | None:intergenic | 35.0% | |
| ! | AATTTTGCTAATGTGGCTCA+TGG | - | chr2.4:75156726-75156745 | MS.gene071988:intron | 35.0% |
| ! | ATCAATGAACTAGCTGTTTC+TGG | - | chr2.4:75156247-75156266 | MS.gene071988:intron | 35.0% |
| ! | ATGTTAGTTCTTCAGCAAGA+TGG | + | chr2.4:75157460-75157479 | None:intergenic | 35.0% |
| ! | GCGTTTGATGAGGTTAATTT+TGG | - | chr2.4:75156453-75156472 | MS.gene071988:intron | 35.0% |
| ! | TCACATTGGTAATTAGAGTG+AGG | - | chr2.4:75156634-75156653 | MS.gene071988:intron | 35.0% |
| ! | TGTTAGTTCTTCAGCAAGAT+GGG | + | chr2.4:75157459-75157478 | None:intergenic | 35.0% |
| !!! | CTCTTAACAGCTTTGGTTTT+AGG | + | chr2.4:75155858-75155877 | None:intergenic | 35.0% |
| AAAGGAAAAGAAACGCCTTC+AGG | - | chr2.4:75155890-75155909 | MS.gene071988:intron | 40.0% | |
| AAGCAGAAGCAACCAAAAGA+TGG | - | chr2.4:75155551-75155570 | MS.gene071988:CDS | 40.0% | |
| AATAGCGACTTCATCTTGAG+GGG | + | chr2.4:75155651-75155670 | None:intergenic | 40.0% | |
| AGCAACCAAAAGATGGTGAA+CGG | - | chr2.4:75155558-75155577 | MS.gene071988:CDS | 40.0% | |
| ATGAAGAAAACATACGAGGG+CGG | + | chr2.4:75155687-75155706 | None:intergenic | 40.0% | |
| CACTGTAGCATAGCGAAATT+TGG | - | chr2.4:75156006-75156025 | MS.gene071988:intron | 40.0% | |
| CTGTAGCATAGCGAAATTTG+GGG | - | chr2.4:75156008-75156027 | MS.gene071988:intron | 40.0% | |
| GAAGACTGCTCATAGTTTGA+TGG | - | chr2.4:75157346-75157365 | MS.gene071988:CDS | 40.0% | |
| GGTCAAAGGGTTGTCAATTA+GGG | - | chr2.4:75155978-75155997 | MS.gene071988:intron | 40.0% | |
| GTCAAAGGGTTGTCAATTAG+GGG | - | chr2.4:75155979-75155998 | MS.gene071988:intron | 40.0% | |
| ! | ATTGGTGGTAGGAGTAACAA+TGG | + | chr2.4:75156281-75156300 | None:intergenic | 40.0% |
| ! | CAAATGTTGGCTACAGCTTA+AGG | + | chr2.4:75157301-75157320 | None:intergenic | 40.0% |
| ! | GTTAGTTCTTCAGCAAGATG+GGG | + | chr2.4:75157458-75157477 | None:intergenic | 40.0% |
| ! | TGGTTTTCGAAGTGTACCAT+CGG | + | chr2.4:75155606-75155625 | None:intergenic | 40.0% |
| !!! | CTTCTTTTGAGACCATCACA+AGG | + | chr2.4:75156957-75156976 | None:intergenic | 40.0% |
| !!! | TTGGTTTTGAGCGTTTGATG+AGG | - | chr2.4:75156443-75156462 | MS.gene071988:intron | 40.0% |
| AAAGCTGGAAGATTGGCGTA+AGG | - | chr2.4:75157583-75157602 | MS.gene071988:CDS | 45.0% | |
| AAATCTTGAGCCGACCCAAT+TGG | + | chr2.4:75156322-75156341 | None:intergenic | 45.0% | |
| AAGGAAATGGCCTCACACAT+TGG | - | chr2.4:75155798-75155817 | MS.gene071988:intron | 45.0% | |
| AATTGAGGGTCATAACCAGG+AGG | + | chr2.4:75155825-75155844 | None:intergenic | 45.0% | |
| AGCTAGCAAAGCTGGAAGAT+TGG | - | chr2.4:75157576-75157595 | MS.gene071988:CDS | 45.0% | |
| GAGCAGTCTTCTAAGTCCTT+TGG | + | chr2.4:75157337-75157356 | None:intergenic | 45.0% | |
| GGGTCAAAGGGTTGTCAATT+AGG | - | chr2.4:75155977-75155996 | MS.gene071988:intron | 45.0% | |
| GTTAGAGAAGCTAGCAAAGC+TGG | - | chr2.4:75157568-75157587 | MS.gene071988:CDS | 45.0% | |
| TCCAATTGAGGGTCATAACC+AGG | + | chr2.4:75155828-75155847 | None:intergenic | 45.0% | |
| TCCTGGTTATGACCCTCAAT+TGG | - | chr2.4:75155824-75155843 | MS.gene071988:intron | 45.0% | |
| TGAAGAAAACATACGAGGGC+GGG | + | chr2.4:75155686-75155705 | None:intergenic | 45.0% | |
| TGGAAGCTTCAGAGCCAATT+GGG | - | chr2.4:75156305-75156324 | MS.gene071988:intron | 45.0% | |
| TGGACGTAATTTGGTCCTTC+TGG | - | chr2.4:75156746-75156765 | MS.gene071988:intron | 45.0% | |
| TGTGGCTCATGGACGTAATT+TGG | - | chr2.4:75156737-75156756 | MS.gene071988:intron | 45.0% | |
| ! | AGGATCCGTTCACCATCTTT+TGG | + | chr2.4:75155566-75155585 | None:intergenic | 45.0% |
| ! | CTCTGCAGTTTTCTCCTGTA+GGG | + | chr2.4:75157528-75157547 | None:intergenic | 45.0% |
| ! | GGTTTTCGAAGTGTACCATC+GGG | + | chr2.4:75155605-75155624 | None:intergenic | 45.0% |
| !! | AATTGGCTCTGAAGCTTCCA+CGG | + | chr2.4:75156305-75156324 | None:intergenic | 45.0% |
| AAACCAGTTCGCATCAGAGC+TGG | - | chr2.4:75155620-75155639 | MS.gene071988:CDS | 50.0% | |
| AGCTTCAGAGCCAATTGGGT+CGG | - | chr2.4:75156309-75156328 | MS.gene071988:intron | 50.0% | |
| ATTTGAGCTTCCAGCTGCCA+TGG | + | chr2.4:75157241-75157260 | None:intergenic | 50.0% | |
| GTGGAAGCTTCAGAGCCAAT+TGG | - | chr2.4:75156304-75156323 | MS.gene071988:intron | 50.0% | |
| TACTCCTACCACCAATTCCG+TGG | - | chr2.4:75156285-75156304 | MS.gene071988:intron | 50.0% | |
| TCGACTTACAGAAGCCCTAC+AGG | - | chr2.4:75157511-75157530 | MS.gene071988:CDS | 50.0% | |
| TCGTTGAGATTGAGCCGACA+AGG | - | chr2.4:75157113-75157132 | MS.gene071988:intron | 50.0% | |
| TGAAGCTTCCACGGAATTGG+TGG | + | chr2.4:75156296-75156315 | None:intergenic | 50.0% | |
| TGCATAGATACCATGGCAGC+TGG | - | chr2.4:75157228-75157247 | MS.gene071988:intron | 50.0% | |
| ! | AAACATACGAGGGCGGGTTT+AGG | + | chr2.4:75155680-75155699 | None:intergenic | 50.0% |
| ! | GCTAGCTTCTCTAACTGCTC+CGG | + | chr2.4:75157563-75157582 | None:intergenic | 50.0% |
| ! | GCTCTGCAGTTTTCTCCTGT+AGG | + | chr2.4:75157529-75157548 | None:intergenic | 50.0% |
| ! | TAACCAGCTCTGATGCGAAC+TGG | + | chr2.4:75155626-75155645 | None:intergenic | 50.0% |
| !! | CTCTGAAGCTTCCACGGAAT+TGG | + | chr2.4:75156299-75156318 | None:intergenic | 50.0% |
| AAGTGTACCATCGGGTCGAC+GGG | + | chr2.4:75155597-75155616 | None:intergenic | 55.0% | |
| ACCAGGAGGACCAATGTGTG+AGG | + | chr2.4:75155811-75155830 | None:intergenic | 55.0% | |
| CAAGGAGTGGGGATCCTTGT+CGG | + | chr2.4:75157130-75157149 | None:intergenic | 55.0% | |
| GAAGTGTACCATCGGGTCGA+CGG | + | chr2.4:75155598-75155617 | None:intergenic | 55.0% | |
| ! | GCTTCCACGGAATTGGTGGT+AGG | + | chr2.4:75156292-75156311 | None:intergenic | 55.0% |
| CTGTGCGTCTGTGCGACCAA+TGG | + | chr2.4:75156795-75156814 | None:intergenic | 60.0% | |
| GCCTCACACATTGGTCCTCC+TGG | - | chr2.4:75155807-75155826 | MS.gene071988:intron | 60.0% | |
| GTACCATCGGGTCGACGGGT+CGG | + | chr2.4:75155593-75155612 | None:intergenic | 65.0% | |
| TACCATCGGGTCGACGGGTC+GGG | + | chr2.4:75155592-75155611 | None:intergenic | 65.0% | |
| ACCATCGGGTCGACGGGTCG+GGG | + | chr2.4:75155591-75155610 | None:intergenic | 70.0% | |
| ! | GCCCCGACCCGTCGACCCGA+TGG | - | chr2.4:75155587-75155606 | MS.gene071988:CDS | 80.0% |
| ! | CGGGTCGACGGGTCGGGGCG+AGG | + | chr2.4:75155586-75155605 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 75155506 | 75157652 | 75155506 | ID=MS.gene071988 |
| chr2.4 | mRNA | 75155506 | 75157652 | 75155506 | ID=MS.gene071988.t1;Parent=MS.gene071988 |
| chr2.4 | exon | 75157467 | 75157652 | 75157467 | ID=MS.gene071988.t1.exon1;Parent=MS.gene071988.t1 |
| chr2.4 | CDS | 75157467 | 75157652 | 75157467 | ID=cds.MS.gene071988.t1;Parent=MS.gene071988.t1 |
| chr2.4 | exon | 75157247 | 75157366 | 75157247 | ID=MS.gene071988.t1.exon2;Parent=MS.gene071988.t1 |
| chr2.4 | CDS | 75157247 | 75157366 | 75157247 | ID=cds.MS.gene071988.t1;Parent=MS.gene071988.t1 |
| chr2.4 | exon | 75156786 | 75157010 | 75156786 | ID=MS.gene071988.t1.exon3;Parent=MS.gene071988.t1 |
| chr2.4 | CDS | 75156786 | 75157010 | 75156786 | ID=cds.MS.gene071988.t1;Parent=MS.gene071988.t1 |
| chr2.4 | exon | 75155506 | 75155649 | 75155506 | ID=MS.gene071988.t1.exon4;Parent=MS.gene071988.t1 |
| chr2.4 | CDS | 75155506 | 75155649 | 75155506 | ID=cds.MS.gene071988.t1;Parent=MS.gene071988.t1 |
| Gene Sequence |
| Protein sequence |
